RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NVL (Mus musculus)

Ensembl gene IDs: ENSMUSG00000026516

Ensembl transcript IDs: ENSMUST00000027797.9

Found 279 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ACAGACTCACTGGTGGGCAGCCGGCCACTGGGACAGAGGAGACCCTaGAAGGGCTGGCCAGAGCTGGAGCTGCAAGTGAGGCATCCTCCC +
Preference number: 1 (lower is better)
Translates to: TDSLVGSRPLGQRRP*KGWPELELQVRHPP
Trigger: GGGAGGATGCCTCACTTGCAGCTCCAGCTCTGGCCAGCCCTTCCAGGGTCTCCTCTGTCCCAGTGGCCGGCTGCCCACCAGTGAGTCTGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 90 bp AATAAGATCATCTGTGTCGCGGTTCACTCTAGTGGGCGGTGGGGGTaGGGGACAGACAGACTCACTGGTGGGCAGCCGGCCACTGGGACA +
Preference number: 1 (lower is better)
Translates to: NKIICVAVHSSGRWG*GTDRLTGGQPATGT
Trigger: TGTCCCAGTGGCCGGCTGCCCACCAGTGAGTCTGTCTGTCCCCCACCCCCACCGCCCACTAGAGTGAACCGCGACACAGATGATCTTATT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR TCA 90 bp GCCAGTAGGAGCAGGTGGCCTTTGGCAGTGAGGACACCGTGGAGCTaGCATGTAGAGGTGCCCCCACAAGTCCCACAGTCTGGGCTAAGA +
Preference number: 1 (lower is better)
Translates to: ASRSRWPLAVRTPWS*HVEVPPQVPQSGLR
Trigger: TCTTAGCCCAGACTGTGGGACTTGTGGGGGCACCTCTACATGTCAGCTCCACGGTGTCCTCACTGCCAAAGGCCACCTGCTCCTACTGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 90 bp GCCACTGCATGGACAAGCCCCACAACTGCACACGTGGCCTGTACATaGTCACGTGGGGATATTGGCATGCAGTGTCTTCAGAGGCCCACC +
Preference number: 1 (lower is better)
Translates to: ATAWTSPTTAHVACT*SRGDIGMQCLQRPT
Trigger: GGTGGGCCTCTGAAGACACTGCATGCCAATATCCCCACGTGACCATGTACAGGCCACGTGTGCAGTTGTGGGGCTTGTCCATGCAGTGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR GCA 90 bp GCCCACCCTGTGCAACCCTGGGGTTCTGGCCCTCTCATTTCTCACTaGTACCTTACAGGGACCATTGTAGAGAGTGGGCCTTGGCCTCTT +
Preference number: 1 (lower is better)
Translates to: AHPVQPWGSGPLISH*YLTGTIVESGPWPL
Trigger: AAGAGGCCAAGGCCCACTCTCTACAATGGTCCCTGTAAGGTAGCAGTGAGAAATGAGAGGGCCAGAACCCCAGGGTTGCACAGGGTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR TCA 90 bp AATCTCAGCACCCAGGAAGCAGAGGCACACAGAACACTGGGAGTCTaGGGCCAGCCTACTCTATACAGTAGGTTGCAGGCCAGTCAGGGG +
Preference number: 1 (lower is better)
Translates to: NLSTQEAEAHRTLGV*GQPTLYSRLQASQG
Trigger: CCCCTGACTGGCCTGCAACCTACTGTATAGAGTAGGCTGGCCTCAGACTCCCAGTGTTCTGTGTGCCTCTGCTTCCTGGGTGCTGAGATT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 90 bp GCTTGCAGGGAGGCTCTGCTCTGTGTGGCAAGCCTCTCTCCTACATaGCACCTTATATCTAGGGGGTGTCATAGCTCGACATCTCCAGGC +
Preference number: 1 (lower is better)
Translates to: ACREALLCVASLSPT*HLISRGCHSSTSPG
Trigger: GCCTGGAGATGTCGAGCTATGACACCCCCTAGATATAAGGTGCCATGTAGGAGAGAGGCTTGCCACACAGAGCAGAGCCTCCCTGCAAGC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 90 bp TCTTTGGTGCCCCAAGCTGAGCTTGCAGGGAGGCTCTGCTCTGTGTaGCAAGCCTCTCTCCTACATGGCACCTTATATCTAGGGGGTGTC +
Preference number: 1 (lower is better)
Translates to: SLVPQAELAGRLCSV*QASLLHGTLYLGGV
Trigger: GACACCCCCTAGATATAAGGTGCCATGTAGGAGAGAGGCTTGCCACACAGAGCAGAGCCTCCCTGCAAGCTCAGCTTGGGGCACCAAAGA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR GCA 90 bp GAAGATGGGAAGGACCTAACTGAAGACACAGCTGAGGAGCATGTGTaGGGGTGTCCTCAGCGACTACGGGGTGGGCTTCTTCCTCTTCAT +
Preference number: 1 (lower is better)
Translates to: EDGKDLTEDTAEEHV*GCPQRLRGGLLPLH
Trigger: ATGAAGAGGAAGAAGCCCACCCCGTAGTCGCTGAGGACACCCGCACACATGCTCCTCAGCTGTGTCTTCAGTTAGGTCCTTCCCATCTTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR GCA 90 bp GTCTCTTGTGAGGCTATGCCGGGGCCTAGCAAACACAGAAGTGGATaGTCACAGTCAGCTATTGGATGGATCACAGGGCCCCCAATGGAG +
Preference number: 1 (lower is better)
Translates to: VSCEAMPGPSKHRSG*SQSAIGWITGPPME
Trigger: CTCCATTGGGGGCCCTGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGCCTCACAAGAGAC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR GCA 90 bp GTGAAGATGCTGTTGGACCTGGTATCTGAGATGGAGATGATGATCTaGTGGGCCTGCACTGGGTGGGCTCTGTATGTGCTGGTGGAGTAT +
Preference number: 1 (lower is better)
Translates to: VKMLLDLVSEMEMMI*WACTGWALYVLVEY
Trigger: ATACTCCACCAGCACATACAGAGCCCACCCAGTGCAGGCCCAGCAGATCATCATCTCCATCTCAGATACCAGGTCCAACAGCATCTTCAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR GCA 90 bp GTGTTGCTGTCTTCAGACACACCAGAAGAGGGCAACAGATCCCATTaGAGAAGGTTGGGAGCCACCATGTGGTTGCTGGGAACTGAACTC +
Preference number: 1 (lower is better)
Translates to: VLLSSDTPEEGNRSH*RRLGATMWLLGTEL
Trigger: GAGTTCAGTTCCCAGCAACCACATGGTGGCTCCCAACCTTCTGCAATGGGATCTGTTGCCCTCTTCTGGTGTGTCTGAAGACAGCAACAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 90 bp AAGATGCTGTTGGACCTGGTATCTGAGATGGAGATGATGATCTGCTaGGCCTGCACTGGGTGGGCTCTGTATGTGCTGGTGGAGTATGCA +
Preference number: 1 (lower is better)
Translates to: KMLLDLVSEMEMMIC*ACTGWALYVLVEYA
Trigger: TGCATACTCCACCAGCACATACAGAGCCCACCCAGTGCAGGCCCAGCAGATCATCATCTCCATCTCAGATACCAGGTCCAACAGCATCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR TCA 90 bp TGTCATGGCAGAAGATACTGTGAAGATGCTGTTGGACCTGGTATCTaGGATGGAGATGATGATCTGCTGGGCCTGCACTGGGTGGGCTCT +
Preference number: 1 (lower is better)
Translates to: CHGRRYCEDAVGPGI*DGDDDLLGLHWVGS
Trigger: AGAGCCCACCCAGTGCAGGCCCAGCAGATCATCATCTCCATCTCAGATACCAGGTCCAACAGCATCTTCACAGTATCTTCTGCCATGACA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR GCA 90 bp AGGGCAACAGATCCCATTGCAGAAGGTTGGGAGCCACCATGTGGTTaGTGGGAACTGAACTCAACCCTTGAGTCATCCCTCCAAACCTTA +
Preference number: 1 (lower is better)
Translates to: RATDPIAEGWEPPCG*WELNSTLESSLQTL
Trigger: TAAGGTTTGGAGGGATGACTCAAGGGTTGAGTTCAGTTCCCAGCAACCACATGGTGGCTCCCAACCTTCTGCAATGGGATCTGTTGCCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 90 bp GGGTCAACAATAGACAAGACTTCCTGCATGTTTATCCTTAGCTCCTaGGTGCAGAGGCCCCTGCCCCTTGGGAACATGCACTGCTGTATA +
Preference number: 1 (lower is better)
Translates to: GSTIDKTSCMFILSS*VQRPLPLGNMHCCI
Trigger: TATACAGCAGTGCATGTTCCCAAGGGGCAGGGGCCTCTGCACCCAGGAGCTAAGGATAAACATGCAGGAAGTCTTGTCTATTGTTGACCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 90 bp TGTCTGGTTCTTTGGTGTCCTCCGCTAGGACATCTCACCGTATCCTaGCATCCCAGTGGAAGAGCTTTTCAAGCTACTTACAGAGGGCCA +
Preference number: 1 (lower is better)
Translates to: CLVLWCPPLGHLTVS*HPSGRAFQATYRGP
Trigger: TGGCCCTCTGTAAGTAGCTTGAAAAGCTCTTCCACTGGGATGCCAGGATACGGTGAGATGTCCTAGCGGAGGACACCAAAGAACCAGACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 90 bp CTGGTATCTGAGATGGAGATGATGATCTGCTGGGCCTGCACTGGGTaGGCTCTGTATGTGCTGGTGGAGTATGCAGACAAGGCAATTTTC +
Preference number: 1 (lower is better)
Translates to: LVSEMEMMICWACTG*ALYVLVEYADKAIF
Trigger: GAAAATTGCCTTGTCTGCATACTCCACCAGCACATACAGAGCCCACCCAGTGCAGGCCCAGCAGATCATCATCTCCATCTCAGATACCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 90 bp TCTGGGCTAAGAATGGTACAGAACTGGTGGTTTCCCACTGCATCCTaGTGGGCTCTCAGAGGCTTCAGTATGCATGTGACAGATGCTCCA +
Preference number: 1 (lower is better)
Translates to: SGLRMVQNWWFPTAS*WALRGFSMHVTDAP
Trigger: TGGAGCATCTGTCACATGCATACTGAAGCCTCTGAGAGCCCACCAGGATGCAGTGGGAAACCACCAGTTCTGTACCATTCTTAGCCCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 90 bp GCAACAGATCCCATTGCAGAAGGTTGGGAGCCACCATGTGGTTGCTaGGAACTGAACTCAACCCTTGAGTCATCCCTCCAAACCTTAGGT +
Preference number: 1 (lower is better)
Translates to: ATDPIAEGWEPPCGC*ELNSTLESSLQTLG
Trigger: ACCTAAGGTTTGGAGGGATGACTCAAGGGTTGAGTTCAGTTCCCAGCAACCACATGGTGGCTCCCAACCTTCTGCAATGGGATCTGTTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR TCA 90 bp GTGGTGACGGTCTGCCCAGTCCCCCAAGGCACTTCCCCGCTTAACTaGCAGGTGTCCTTGGAATCTAATTCCTCTATGAACTTCAAATGT +
Preference number: 1 (lower is better)
Translates to: VVTVCPVPQGTSPLN*QVSLESNSSMNFKC
Trigger: ACATTTGAAGTTCATAGAGGAATTAGATTCCAAGGACACCTGTCAGTTAAGCGGGGAAGTGCCTTGGGGGACTGGGCAGACCGTCACCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR GCA 90 bp CAGGCTGCCAGGAGAACAGCTTACCTGCAAGGATCTAGTGTTCTGTaGCTACCAGGTAACATGGAGCACAGAATACTTGGCTTCCCAGAA +
Preference number: 1 (lower is better)
Translates to: QAARRTAYLQGSSVL*LPGNMEHRILGFPE
Trigger: TTCTGGGAAGCCAAGTATTCTGTGCTCCATGTTACCTGGTAGGCACAGAACACTAGATCCTTGCAGGTAAGCTGTTCTCCTGGCAGCCTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR GCA 90 bp GGCCATTATTGGAAAGAGAGGCCCATTGGTCTTGCAAACTTTTTATaGCTCAGTACAGGGGAATGCCAGGGCCAAGAAGTGGGAGTGGGT +
Preference number: 1 (lower is better)
Translates to: GHYWKERPIGLANFL*LSTGECQGQEVGVG
Trigger: ACCCACTCCCACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATAAAAAGTTTGCAAGACCAATGGGCCTCTCTTTCCAATAATGGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 90 bp GCCCTTATCCGGATTGCTTGGTGTCTTCAGGAGAAGGTCCTATTATaGCCAATGTTTCTGAACTTGAGCTGCCTGCTGACCCCAAGTAGG +
Preference number: 1 (lower is better)
Translates to: ALIRIAWCLQEKVLL*PMFLNLSCLLTPSR
Trigger: CCTACTTGGGGTCAGCAGGCAGCTCAAGTTCAGAAACATTGGCCATAATAGGACCTTCTCCTGAAGACACCAAGCAATCCGGATAAGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 90 bp TCCAGGACCCAACTGACACTTGGTAAGACTGGGAGAAGGCTGCTTTaGACAGACTGTCATGGCAGAAGATACTGTGAAGATGCTGTTGGA +
Preference number: 1 (lower is better)
Translates to: SRTQLTLGKTGRRLL*TDCHGRRYCEDAVG
Trigger: TCCAACAGCATCTTCACAGTATCTTCTGCCATGACAGTCTGTCCAAAGCAGCCTTCTCCCAGTCTTACCAAGTGTCAGTTGGGTCCTGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR GCA 90 bp AGATCATTGGCAGGACAGCAAAGCAAACTGAAATTGAGTCCAACGTaGCACTTTCCCACATCTGGGTACTACTTCTGGGCACTCCCACAT +
Preference number: 1 (lower is better)
Translates to: RSLAGQQSKLKLSPT*HFPTSGYYFWALPH
Trigger: ATGTGGGAGTGCCCAGAAGTAGTACCCAGATGTGGGAAAGTGGCACGTTGGACTCAATTTCAGTTTGCTTTGCTGTCCTGCCAATGATCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR TCA 90 bp TGCCAAATGAAAACACTATCTGCCATATCAGCTCTTCTTGACAACTaGATGCTGGGTCTAAGTGCGTTTATTTCTGGTGGCCTGGACATA +
Preference number: 1 (lower is better)
Translates to: CQMKTLSAISALLDN*MLGLSAFISGGLDI
Trigger: TATGTCCAGGCCACCAGAAATAAACGCACTTAGACCCAGCATTCAGTTGTCAAGAAGAGCTGATATGGCAGATAGTGTTTTCATTTGGCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR TCA 90 bp TGTAATATGCCAAATGAAAACACTATCTGCCATATCAGCTCTTCTTaGCAACTGAATGCTGGGTCTAAGTGCGTTTATTTCTGGTGGCCT +
Preference number: 1 (lower is better)
Translates to: CNMPNENTICHISSS*QLNAGSKCVYFWWP
Trigger: AGGCCACCAGAAATAAACGCACTTAGACCCAGCATTCAGTTGTCAAGAAGAGCTGATATGGCAGATAGTGTTTTCATTTGGCATATTACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 90 bp GTAAACTGGCAAGAACAGGCTGAGAAGCAAGGGACTTTTCTGGCATaGCAGTTTTGTTTGTACTGGACCTGTATATTTGTAAAGCTATAT +
Preference number: 1 (lower is better)
Translates to: VNWQEQAEKQGTFLA*QFCLYWTCIFVKLY
Trigger: ATATAGCTTTACAAATATACAGGTCCAGTACAAACAAAACTGCCATGCCAGAAAAGTCCCTTGCTTCTCAGCCTGTTCTTGCCAGTTTAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CAA 90 bp CTGCTACCTTACAGGGACCATTGTAGAGAGTGGGCCTTGGCCTCTTaGGTGCCCCAAGCTGAGCTTGCAGGGAGGCTCTGCTCTGTGTGG +
Preference number: 2 (lower is better)
Translates to: LLPYRDHCREWALAS*VPQAELAGRLCSVW
Trigger: CCACACAGAGCAGAGCCTCCCTGCAAGCTCAGCTTGGGGCACCAAAGAGGCCAAGGCCCACTCTCTACAATGGTCCCTGTAAGGTAGCAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR CCA 90 bp AGAGGGCAACAGATCCCATTGCAGAAGGTTGGGAGCCACCATGTGGTTGCTGGGCTCAGGCTCCAGGTGTaGATTGCAGCATGCCCGTGC +
Preference number: 2 (lower is better)
Translates to: RGQQIPLQKVGSHHVVAGLRLQV*IAACPC
Trigger: GCACGGGCATGCTGCAATCCACACCTGGAGCCTGAG...CCCAGCAACCACATGGTGGCTCCCAACCTTCTGCAATGGGATCTGTTGCCCTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CAA 90 bp ATTGTAGAGAGTGGGCCTTGGCCTCTTTGGTGCCCCAAGCTGAGCTaGCAGGGAGGCTCTGCTCTGTGTGGCAAGCCTCTCTCCTACATG +
Preference number: 2 (lower is better)
Translates to: IVESGPWPLWCPKLS*QGGSALCGKPLSYM
Trigger: CATGTAGGAGAGAGGCTTGCCACACAGAGCAGAGCCTCCCTGCAAGCTCAGCTTGGGGCACCAAAGAGGCCAAGGCCCACTCTCTACAAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR TCA 90 bp TCTGTGGACCCTAACCCGCCCTGCTACTGCTGGTGTGCAGTGGACCCTAGCCAGCTGGCAAGAACAGGCTaGGAAGCAAGGGACTTTTCT +
Preference number: 2 (lower is better)
Translates to: SVDPNPPCYCWCAVDPSQLARTG*EARDFS
Trigger: AGAAAAGTCCCTTGCTTCTCAGCCTGTTCTTGCCAG...CTGGCTAGGGTCCACTGCACACCAGCAGTAGCAGGGCGGGTTAGGGTCCACAGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR GCA 90 bp CCCACAAGTCCCACAGTCTGGGCTAAGAATGGTACAGAACTGGTGGTTTCCCACCGTGAGTCTGGCCTCTaGCAGGCTGGACATAGCCCC +
Preference number: 2 (lower is better)
Translates to: PTSPTVWAKNGTELVVSHRESGL*QAGHSP
Trigger: GGGGCTATGTCCAGCCTGGCAGAGGCCAGACTCACG...GTGGGAAACCACCAGTTCTGTACCATTCTTAGCCCAGACTGTGGGACTTGTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR CCA 90 bp TCTGTGGACCCTAACCCGCCCTGCTACTGCTGGTGTGCAGTGGACCCTAGCCAGAGCCTCTCTCCTACATaGCACCTTATATCTAGGGGG +
Preference number: 2 (lower is better)
Translates to: SVDPNPPCYCWCAVDPSQSLSPT*HLISRG
Trigger: CCCCCTAGATATAAGGTGCCATGTAGGAGAGAGGCT...CTGGCTAGGGTCCACTGCACACCAGCAGTAGCAGGGCGGGTTAGGGTCCACAGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR CCA 90 bp TTGGTGTCCTCCGCTAGGACATCTCACCGTATCCTGGCATCCCAGTGGAAGAGCCACCCTGTGCAACCCTaGGGTTCTGGCCCTCTCATT +
Preference number: 2 (lower is better)
Translates to: LVSSARTSHRILASQWKSHPVQP*GSGPLI
Trigger: AATGAGAGGGCCAGAACCCCAGGGTTGCACAGGGTG...GCTCTTCCACTGGGATGCCAGGATACGGTGAGATGTCCTAGCGGAGGACACCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR CCA 90 bp TTCCAGGGCCTGAACCTAGCCAGTAGGAGCAGGTGGCCTTTGGCAGTGAGGACATCAGCGACTACGGGGTaGGCTTCTTCCTCTTCATCC +
Preference number: 2 (lower is better)
Translates to: FQGLNLASRSRWPLAVRTSATTG*ASSSSS
Trigger: GGATGAAGAGGAAGAAGCCCACCCCGTAGTCGCTGA...TGTCCTCACTGCCAAAGGCCACCTGCTCCTACTGGCTAGGTTCAGGCCCTGGAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR GCA 90 bp AGAGAGCGGCAGAGGTTCCAGGGCCTGAACCTAGCCAGTAGGAGCAGGTGGCCTTGTTCACCCATGAGTTaGTACCCCCACCCAATAATG +
Preference number: 2 (lower is better)
Translates to: RERQRFQGLNLASRSRWPCSPMS*YPHPIM
Trigger: CATTATTGGGTGGGGGTAGCAACTCATGGGTGAACA...AGGCCACCTGCTCCTACTGGCTAGGTTCAGGCCCTGGAACCTCTGCCGCTCTCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR GCA 90 bp CCCACAAGTCCCACAGTCTGGGCTAAGAATGGTACAGAACTGGTGGTTTCCCACCCTCCAGGCATGGACTaGAGGCTGCCAGGAGAACAG +
Preference number: 2 (lower is better)
Translates to: PTSPTVWAKNGTELVVSHPPGMD*RLPGEQ
Trigger: CTGTTCTCCTGGCAGCCTGCAGTCCATGCCTGGAGG...GTGGGAAACCACCAGTTCTGTACCATTCTTAGCCCAGACTGTGGGACTTGTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR CCA 90 bp TTGGTGTCCTCCGCTAGGACATCTCACCGTATCCTGGCATCCCAGTGGAAGAGCTCCTCTTATTGGGCTTaGGTGGCTGTCCCTTGCCTG +
Preference number: 2 (lower is better)
Translates to: LVSSARTSHRILASQWKSSSYWA*VAVPCL
Trigger: CAGGCAAGGGACAGCCACCCAAGCCCAATAAGAGGA...GCTCTTCCACTGGGATGCCAGGATACGGTGAGATGTCCTAGCGGAGGACACCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR CCA 90 bp CCCACAAGTCCCACAGTCTGGGCTAAGAATGGTACAGAACTGGTGGTTTCCCACGGGCCTTGGCCTCTTTaGTGCCCCAAGCTGAGCTTG +
Preference number: 2 (lower is better)
Translates to: PTSPTVWAKNGTELVVSHGPWPL*CPKLSL
Trigger: CAAGCTCAGCTTGGGGCACCAAAGAGGCCAAGGCCC...GTGGGAAACCACCAGTTCTGTACCATTCTTAGCCCAGACTGTGGGACTTGTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR CCA 90 bp AGAGAGCGGCAGAGGTTCCAGGGCCTGAACCTAGCCAGTAGGAGCAGGTGGCCTGTGTATTCAGAGACTTaGCTGCCAGAAATGTCCTGG +
Preference number: 2 (lower is better)
Translates to: RERQRFQGLNLASRSRWPVYSET*LPEMSW
Trigger: CCAGGACATTTCTGGCAGCCAAGTCTCTGAATACAC...AGGCCACCTGCTCCTACTGGCTAGGTTCAGGCCCTGGAACCTCTGCCGCTCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR CCA 90 bp GCAGGGAGGCTCTGCTCTGTGTGGCAAGCCTCTCTCCTACATGGCACCTTATATCTTATTGGGCTTGGGTaGCTGTCCCTTGCCTGTCAG +
Preference number: 2 (lower is better)
Translates to: AGRLCSVWQASLLHGTLYLIGLG*LSLACQ
Trigger: CTGACAGGCAAGGGACAGCCACCCAAGCCCAATAAG...ATATAAGGTGCCATGTAGGAGAGAGGCTTGCCACACAGAGCAGAGCCTCCCTGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR CCA 90 bp GCTACTGCTGGTGTGCAGTGGACCCTAGCCAGCCCAGTGCAATGGGTCAACAATAGGCTCTGCTCTGTGTaGCAAGCCTCTCTCCTACAT +
Preference number: 2 (lower is better)
Translates to: ATAGVQWTLASPVQWVNNRLCSV*QASLLH
Trigger: ATGTAGGAGAGAGGCTTGCCACACAGAGCAGAGCCT...ATTGTTGACCCATTGCACTGGGCTGGCTAGGGTCCACTGCACACCAGCAGTAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR TCA 90 bp CCCACAAGTCCCACAGTCTGGGCTAAGAATGGTACAGAACTGGTGGTTTCCCACTGCCCAGGGAGGGACTaGTCCTGTAAGAAGGTTCAG +
Preference number: 2 (lower is better)
Translates to: PTSPTVWAKNGTELVVSHCPGRD*SCKKVQ
Trigger: CTGAACCTTCTTACAGGATCAGTCCCTCCCTGGGCA...GTGGGAAACCACCAGTTCTGTACCATTCTTAGCCCAGACTGTGGGACTTGTGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR GCA 90 bp TTCCAGGGCCTGAACCTAGCCAGTAGGAGCAGGTGGCCTTTGGCAGTGAGGACAAGCCCTTATCCGGATTaGTTGGTGTCTTCAGGAGAA +
Preference number: 2 (lower is better)
Translates to: FQGLNLASRSRWPLAVRTSPYPD*LVSSGE
Trigger: TTCTCCTGAAGACACCAAGCAATCCGGATAAGGGCT...TGTCCTCACTGCCAAAGGCCACCTGCTCCTACTGGCTAGGTTCAGGCCCTGGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR GCA 90 bp AGAGAGCGGCAGAGGTTCCAGGGCCTGAACCTAGCCAGTAGGAGCAGGTGGCCTATAGACAAGACTTCCTaGATGTTTATCCTTAGCTCC +
Preference number: 2 (lower is better)
Translates to: RERQRFQGLNLASRSRWPIDKTS*MFILSS
Trigger: GGAGCTAAGGATAAACATGCAGGAAGTCTTGTCTAT...AGGCCACCTGCTCCTACTGGCTAGGTTCAGGCCCTGGAACCTCTGCCGCTCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR GCA 90 bp TTCCAGGGCCTGAACCTAGCCAGTAGGAGCAGGTGGCCTTTGGCAGTGAGGACAATTCAGAGACTTGGCTaGCAGAAATGTCCTGGTTAC +
Preference number: 2 (lower is better)
Translates to: FQGLNLASRSRWPLAVRTIQRLG*QKCPGY
Trigger: GTAACCAGGACATTTCTGGCAGCCAAGTCTCTGAAT...TGTCCTCACTGCCAAAGGCCACCTGCTCCTACTGGCTAGGTTCAGGCCCTGGAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR CCA 90 bp AGAGGGCAACAGATCCCATTGCAGAAGGTTGGGAGCCACCATGTGGTTGCTGGGCAACTGACAAGTACTTaGACCTCTCCGTGCCATTTG +
Preference number: 2 (lower is better)
Translates to: RGQQIPLQKVGSHHVVAGQLTST*TSPCHL
Trigger: CAAATGGCACGGAGAGGTCCAAGTACTTGTCAGTTG...CCCAGCAACCACATGGTGGCTCCCAACCTTCTGCAATGGGATCTGTTGCCCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR TCA 90 bp AGAGGGCAACAGATCCCATTGCAGAAGGTTGGGAGCCACCATGTGGTTGCTGGGCCTGGGAGACAGTGGTaGATGCAATTTTGCTACTTT +
Preference number: 2 (lower is better)
Translates to: RGQQIPLQKVGSHHVVAGPGRQW*MQFCYF
Trigger: AAAGTAGCAAAATTGCATTCACCACTGTCTCCCAGG...CCCAGCAACCACATGGTGGCTCCCAACCTTCTGCAATGGGATCTGTTGCCCTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR TCA 90 bp AGAGGGCAACAGATCCCATTGCAGAAGGTTGGGAGCCACCATGTGGTTGCTGGGCATATCAGCTCTTCTTaGCAACTGAATGCTGGGTCT +
Preference number: 2 (lower is better)
Translates to: RGQQIPLQKVGSHHVVAGHISSS*QLNAGS
Trigger: AGACCCAGCATTCAGTTGTCAAGAAGAGCTGATATG...CCCAGCAACCACATGGTGGCTCCCAACCTTCTGCAATGGGATCTGTTGCCCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR GCA 90 bp ATTTCTGGTGGCCTGGACATAAAATACAAGCTGTGTCTGCTGTGGTACAAGTTGTCCTTAGCTCCTGGGTaGAGAGGCCCCTGCCCCTTG +
Preference number: 2 (lower is better)
Translates to: ISGGLDIKYKLCLLWYKLSLAPG*RGPCPL
Trigger: CAAGGGGCAGGGGCCTCTGCACCCAGGAGCTAAGGA...CAACTTGTACCACAGCAGACACAGCTTGTATTTTATGTCCAGGCCACCAGAAAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR CCA 90 bp TTGGTGTCCTCCGCTAGGACATCTCACCGTATCCTGGCATCCCAGTGGAAGAGCAGCAAGGGACTTTTCTaGCATGGCAGTTTTGTTTGT +
Preference number: 2 (lower is better)
Translates to: LVSSARTSHRILASQWKSSKGLF*HGSFVC
Trigger: ACAAACAAAACTGCCATGCCAGAAAAGTCCCTTGCT...GCTCTTCCACTGGGATGCCAGGATACGGTGAGATGTCCTAGCGGAGGACACCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CAA 90 bp TGCTTTGGACAGACTGTCATGGCAGAAGATACTGTGAAGATGCTGTaGGACCTGGTATCTGAGATGGAGATGATGATCTGCTGGGCCTGC +
Preference number: 2 (lower is better)
Translates to: CFGQTVMAEDTVKML*DLVSEMEMMICWAC
Trigger: GCAGGCCCAGCAGATCATCATCTCCATCTCAGATACCAGGTCCAACAGCATCTTCACAGTATCTTCTGCCATGACAGTCTGTCCAAAGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CAA 90 bp TGGTGTCTTCAGGAGAAGGTCCTATTATGGCCAATGTTTCTGAACTaGAGCTGCCTGCTGACCCCAAGTAGGAACTATCCAGGACCCAAC +
Preference number: 2 (lower is better)
Translates to: WCLQEKVLLWPMFLN*SCLLTPSRNYPGPN
Trigger: GTTGGGTCCTGGATAGTTCCTACTTGGGGTCAGCAGGCAGCTCAAGTTCAGAAACATTGGCCATAATAGGACCTTCTCCTGAAGACACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR GCA 90 bp ATTTCTGGTGGCCTGGACATAAAATACAAGCTGTGTCTGCTGTGGTACAAGTTGGCTGAGGAGCATGTGTaGGGGTGTCCTCAGCGACTA +
Preference number: 2 (lower is better)
Translates to: ISGGLDIKYKLCLLWYKLAEEHV*GCPQRL
Trigger: TAGTCGCTGAGGACACCCGCACACATGCTCCTCAGC...CAACTTGTACCACAGCAGACACAGCTTGTATTTTATGTCCAGGCCACCAGAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR CCA 90 bp ATTTCTGGTGGCCTGGACATAAAATACAAGCTGTGTCTGCTGTGGTACAAGTTGGAGGCCCCTGCCCCTTaGGAACATGCACTGCTGTAT +
Preference number: 2 (lower is better)
Translates to: ISGGLDIKYKLCLLWYKLEAPAP*EHALLY
Trigger: ATACAGCAGTGCATGTTCCCAAGGGGCAGGGGCCTC...CAACTTGTACCACAGCAGACACAGCTTGTATTTTATGTCCAGGCCACCAGAAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR GCA 90 bp CCCACAAGTCCCACAGTCTGGGCTAAGAATGGTACAGAACTGGTGGTTTCCCACTTTTATAGCCTAGACTaGTACCTTTCAAAGCCTGGG +
Preference number: 2 (lower is better)
Translates to: PTSPTVWAKNGTELVVSHFYSLD*YLSKPG
Trigger: CCCAGGCTTTGAAAGGTAGCAGTCTAGGCTATAAAA...GTGGGAAACCACCAGTTCTGTACCATTCTTAGCCCAGACTGTGGGACTTGTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR GCA 90 bp AGGCATTACCACCTGAGAGGATGCAGAGAACAGCTTTACGACTATATCTTTAAATCGACATCTCCAGGCTaGCTGCTTCCCACCCTGCCT +
Preference number: 2 (lower is better)
Translates to: RHYHLRGCREQLYDYIFKSTSPG*LLPTLP
Trigger: AGGCAGGGTGGGAAGCAGGCAGCCTGGAGATGTCGA...TTTAAAGATATAGTCGTAAAGCTGTTCTCTGCATCCTCTCAGGTGGTAATGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR CCA 90 bp CCCACAAGTCCCACAGTCTGGGCTAAGAATGGTACAGAACTGGTGGTTTCCCACAAGACGTGCACAACCTaGATTACTACAAGAAGACCA +
Preference number: 2 (lower is better)
Translates to: PTSPTVWAKNGTELVVSHKTCTT*ITTRRP
Trigger: TGGTCTTCTTGTAGTAATCCAGGTTGTGCACGTCTT...GTGGGAAACCACCAGTTCTGTACCATTCTTAGCCCAGACTGTGGGACTTGTGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR CCA 90 bp AGGCATTACCACCTGAGAGGATGCAGAGAACAGCTTTACGACTATATCTTTAAAAATGGCCTCCAGGCATaGACTGCAGGCTGCCAGGAG +
Preference number: 2 (lower is better)
Translates to: RHYHLRGCREQLYDYIFKNGLQA*TAGCQE
Trigger: CTCCTGGCAGCCTGCAGTCCATGCCTGGAGGCCATT...TTTAAAGATATAGTCGTAAAGCTGTTCTCTGCATCCTCTCAGGTGGTAATGCCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR CCA 90 bp AGAGGGCAACAGATCCCATTGCAGAAGGTTGGGAGCCACCATGTGGTTGCTGGGGATGATGAGCGTGACTaGAGAATTAGAAGTAAATGT +
Preference number: 2 (lower is better)
Translates to: RGQQIPLQKVGSHHVVAGDDERD*RIRSKC
Trigger: ACATTTACTTCTAATTCTCCAGTCACGCTCATCATC...CCCAGCAACCACATGGTGGCTCCCAACCTTCTGCAATGGGATCTGTTGCCCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR GCA 90 bp GACTTTTCTGGCATGGCAGTTTTGTTTGTACTGGACCTGTATATTTGTAAAGCTTGGGTGGCTGTCCCTTaGCTGTCAGTCAGCAGGGTC +
Preference number: 2 (lower is better)
Translates to: DFSGMAVLFVLDLYICKAWVAVP*LSVSRV
Trigger: GACCCTGCTGACTGACAGGCAAGGGACAGCCACCCA...AGCTTTACAAATATACAGGTCCAGTACAAACAAAACTGCCATGCCAGAAAAGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR CCA 90 bp AGGCATTACCACCTGAGAGGATGCAGAGAACAGCTTTACGACTATATCTTTAAAGAGATGATGATCTGCTaGGCCTGCACTGGGTGGGCT +
Preference number: 2 (lower is better)
Translates to: RHYHLRGCREQLYDYIFKEMMIC*ACTGWA
Trigger: AGCCCACCCAGTGCAGGCCCAGCAGATCATCATCTC...TTTAAAGATATAGTCGTAAAGCTGTTCTCTGCATCCTCTCAGGTGGTAATGCCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR TCA 90 bp AGGCATTACCACCTGAGAGGATGCAGAGAACAGCTTTACGACTATATCTTTAAAGTGGCCTGCTACCTGTaGAGTGGATGGAATCAGAGG +
Preference number: 2 (lower is better)
Translates to: RHYHLRGCREQLYDYIFKVACYL*SGWNQR
Trigger: CCTCTGATTCCATCCACTTCACAGGTAGCAGGCCAC...TTTAAAGATATAGTCGTAAAGCTGTTCTCTGCATCCTCTCAGGTGGTAATGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR GCA 90 bp GACTGGAGAATTAGAAGTAAATGTCAGAAAGTCTTAAATAGTGAATCTGAGCAGGGGTGCAGAGGCCCCTaGCCCTTGGGAACATGCACT +
Preference number: 2 (lower is better)
Translates to: DWRIRSKCQKVLNSESEQGCRGP*PLGTCT
Trigger: AGTGCATGTTCCCAAGGGGCAGGGGCCTCTGCACCC...CTGCTCAGATTCACTATTTAAGACTTTCTGACATTTACTTCTAATTCTCCAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR GCA 90 bp CCAGAGCTTGTGTCTCTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATGGAGAACAGCTTACCTaGAAGGATCTAGTGTTCTGT +
Preference number: 2 (lower is better)
Translates to: PELVSLAAYVSEDGLVGHGEQLT*KDLVFC
Trigger: ACAGAACACTAGATCCTTGCAGGTAAGCTGTTCTCC...ATGGCCAACTAGGCCATCTTCTGATACATATGCAGCTAGAGACACAAGCTCTGG
47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR GCA 90 bp GACTGGAGAATTAGAAGTAAATGTCAGAAAGTCTTAAATAGTGAATCTGAGCAGAACCCGCCCTGCTACTaGTGGTGTGCAGTGGACCCT +
Preference number: 2 (lower is better)
Translates to: DWRIRSKCQKVLNSESEQNPPCY*WCAVDP
Trigger: AGGGTCCACTGCACACCAGCAGTAGCAGGGCGGGTT...CTGCTCAGATTCACTATTTAAGACTTTCTGACATTTACTTCTAATTCTCCAGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CAA 90 bp CAAAATAGAGTAAGATCATTGGCAGGACAGCAAAGCAAACTGAAATaGAGTCCAACGTGCCACTTTCCCACATCTGGGTACTACTTCTGG +
Preference number: 2 (lower is better)
Translates to: QNRVRSLAGQQSKLK*SPTCHFPTSGYYFW
Trigger: CCAGAAGTAGTACCCAGATGTGGGAAAGTGGCACGTTGGACTCAATTTCAGTTTGCTTTGCTGTCCTGCCAATGATCTTACTCTATTTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR GCA 90 bp GACTGGAGAATTAGAAGTAAATGTCAGAAAGTCTTAAATAGTGAATCTGAGCAGCCTTGGCCTCTTTGGTaGCCCAAGCTGAGCTTGCAG +
Preference number: 2 (lower is better)
Translates to: DWRIRSKCQKVLNSESEQPWPLW*PKLSLQ
Trigger: CTGCAAGCTCAGCTTGGGGCACCAAAGAGGCCAAGG...CTGCTCAGATTCACTATTTAAGACTTTCTGACATTTACTTCTAATTCTCCAGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR TCA 90 bp GACTGGAGAATTAGAAGTAAATGTCAGAAAGTCTTAAATAGTGAATCTGAGCAGTGTATAGTGATCTCCTaGGTGGCCAGGGCCAGGAAG +
Preference number: 2 (lower is better)
Translates to: DWRIRSKCQKVLNSESEQCIVIS*VARARK
Trigger: CTTCCTGGCCCTGGCCACTCAGGAGATCACTATACA...CTGCTCAGATTCACTATTTAAGACTTTCTGACATTTACTTCTAATTCTCCAGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR GCA 90 bp GACTGGAGAATTAGAAGTAAATGTCAGAAAGTCTTAAATAGTGAATCTGAGCAGCTTACAGAGGGCCACTaGATGGACAAGCCCCACAAC +
Preference number: 2 (lower is better)
Translates to: DWRIRSKCQKVLNSESEQLTEGH*MDKPHN
Trigger: GTTGTGGGGCTTGTCCATGCAGTGGCCCTCTGTAAG...CTGCTCAGATTCACTATTTAAGACTTTCTGACATTTACTTCTAATTCTCCAGTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR GCA 90 bp ATTTCTGGTGGCCTGGACATAAAATACAAGCTGTGTCTGCTGTGGTACAAGTTGTGTGCTGGTGGAGTATaGAGACAAGGCAATTTTCAA +
Preference number: 2 (lower is better)
Translates to: ISGGLDIKYKLCLLWYKLCAGGV*RQGNFQ
Trigger: TTGAAAATTGCCTTGTCTGCATACTCCACCAGCACA...CAACTTGTACCACAGCAGACACAGCTTGTATTTTATGTCCAGGCCACCAGAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR CCA 90 bp GACTGGAGAATTAGAAGTAAATGTCAGAAAGTCTTAAATAGTGAATCTGAGCAGTTTCCCACTGCATCCTaGTGGGCTCTCAGAGGCTTC +
Preference number: 2 (lower is better)
Translates to: DWRIRSKCQKVLNSESEQFPTAS*WALRGF
Trigger: GAAGCCTCTGAGAGCCCACCAGGATGCAGTGGGAAA...CTGCTCAGATTCACTATTTAAGACTTTCTGACATTTACTTCTAATTCTCCAGTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR GCA 90 bp ATTTCTGGTGGCCTGGACATAAAATACAAGCTGTGTCTGCTGTGGTACAAGTTGTTTTACAAGTTGTTTTaGTGCAGGCTTAACACTCCC +
Preference number: 2 (lower is better)
Translates to: ISGGLDIKYKLCLLWYKLFYKLF*CRLNTP
Trigger: GGGAGTGTTAAGCCTGCAGCAAAACAACTTGTAAAA...CAACTTGTACCACAGCAGACACAGCTTGTATTTTATGTCCAGGCCACCAGAAAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR CCA 90 bp GACTGGAGAATTAGAAGTAAATGTCAGAAAGTCTTAAATAGTGAATCTGAGCAGTTACAGACTTTGGCCTaGCCCAAGACGTGCACAACC +
Preference number: 2 (lower is better)
Translates to: DWRIRSKCQKVLNSESEQLQTLA*PKTCTT
Trigger: GGTTGTGCACGTCTTGGGCCAGGCCAAAGTCTGTAA...CTGCTCAGATTCACTATTTAAGACTTTCTGACATTTACTTCTAATTCTCCAGTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR CCA 90 bp AGGCATTACCACCTGAGAGGATGCAGAGAACAGCTTTACGACTATATCTTTAAACTAGTTGGCCATTATTaGAAAGAGAGGCCCATTGGT +
Preference number: 2 (lower is better)
Translates to: RHYHLRGCREQLYDYIFKLVGHY*KERPIG
Trigger: ACCAATGGGCCTCTCTTTCCAATAATGGCCAACTAG...TTTAAAGATATAGTCGTAAAGCTGTTCTCTGCATCCTCTCAGGTGGTAATGCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CAA 90 bp GAACAGGCTGAGAAGCAAGGGACTTTTCTGGCATGGCAGTTTTGTTaGTACTGGACCTGTATATTTGTAAAGCTATATTTATCAACTCCC +
Preference number: 2 (lower is better)
Translates to: EQAEKQGTFLAWQFC*YWTCIFVKLYLSTP
Trigger: GGGAGTTGATAAATATAGCTTTACAAATATACAGGTCCAGTACAAACAAAACTGCCATGCCAGAAAAGTCCCTTGCTTCTCAGCCTGTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CAA 90 bp TCTAATTCCTCTATGAACTTCAAATGTAGCCCTTATCCGGATTGCTaGGTGTCTTCAGGAGAAGGTCCTATTATGGCCAATGTTTCTGAA +
Preference number: 2 (lower is better)
Translates to: SNSSMNFKCSPYPDC*VSSGEGPIMANVSE
Trigger: TTCAGAAACATTGGCCATAATAGGACCTTCTCCTGAAGACACCAAGCAATCCGGATAAGGGCTACATTTGAAGTTCATAGAGGAATTAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR TCA 90 bp GACTGGAGAATTAGAAGTAAATGTCAGAAAGTCTTAAATAGTGAATCTGAGCAGGCTTCAGTATGCATGTaGCAGATGCTCCATCCTCAG +
Preference number: 2 (lower is better)
Translates to: DWRIRSKCQKVLNSESEQASVCM*QMLHPQ
Trigger: CTGAGGATGGAGCATCTGTCACATGCATACTGAAGC...CTGCTCAGATTCACTATTTAAGACTTTCTGACATTTACTTCTAATTCTCCAGTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR CCA 90 bp GACTGGAGAATTAGAAGTAAATGTCAGAAAGTCTTAAATAGTGAATCTGAGCAGGCCAGCCCAGTGCAATaGGTCAACAATAGACAAGAC +
Preference number: 2 (lower is better)
Translates to: DWRIRSKCQKVLNSESEQASPVQ*VNNRQD
Trigger: GTCTTGTCTATTGTTGACCCATTGCACTGGGCTGGC...CTGCTCAGATTCACTATTTAAGACTTTCTGACATTTACTTCTAATTCTCCAGTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR CCA 90 bp GACTGGAGAATTAGAAGTAAATGTCAGAAAGTCTTAAATAGTGAATCTGAGCAGAGAAGATGGCCTAGTTaGCCATTATTGGAAAGAGAG +
Preference number: 2 (lower is better)
Translates to: DWRIRSKCQKVLNSESEQRRWPS*PLLERE
Trigger: CTCTCTTTCCAATAATGGCCAACTAGGCCATCTTCT...CTGCTCAGATTCACTATTTAAGACTTTCTGACATTTACTTCTAATTCTCCAGTC
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR CCA 90 bp GACTGGAGAATTAGAAGTAAATGTCAGAAAGTCTTAAATAGTGAATCTGAGCAGGAAAGAGAGGCCCATTaGTCTTGCAAACTTTTTATG +
Preference number: 2 (lower is better)
Translates to: DWRIRSKCQKVLNSESEQEREAH*SCKLFM
Trigger: CATAAAAAGTTTGCAAGACCAATGGGCCTCTCTTTC...CTGCTCAGATTCACTATTTAAGACTTTCTGACATTTACTTCTAATTCTCCAGTC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR GCA 90 bp GACTGGAGAATTAGAAGTAAATGTCAGAAAGTCTTAAATAGTGAATCTGAGCAGACAGATTATTCTAATTaGTATGTATTCCAGGCAGGA +
Preference number: 2 (lower is better)
Translates to: DWRIRSKCQKVLNSESEQTDYSN*YVFQAG
Trigger: TCCTGCCTGGAATACATAGCAATTAGAATAATCTGT...CTGCTCAGATTCACTATTTAAGACTTTCTGACATTTACTTCTAATTCTCCAGTC
34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 72 bp ATCTGTGTCGCGGTTCACTCTAGTGGGCGGTGGGGGTaGGGGACAGACAGACTCACTGGTGGGCAGCCGGCC +
Preference number: 3 (lower is better)
Translates to: ICVAVHSSGRWG*GTDRLTGGQPA
Trigger: GGCCGGCTGCCCACCAGTGAGTCTGTCTGTCCCCCACCCCCACCGCCCACTAGAGTGAACCGCGACACAGAT
67% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR GCA 72 bp GCCCCAGCCAATGTTTCTGTGGACCCTAACCCGCCCTaGTACTGCTGGTGTGCAGTGGACCCTAGCCAGCCC +
Preference number: 3 (lower is better)
Translates to: APANVSVDPNPP*YCWCAVDPSQP
Trigger: GGGCTGGCTAGGGTCCACTGCACACCAGCAGTAGCAGGGCGGGTTAGGGTCCACAGAAACATTGGCTGGGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR CAA 90 bp TCTGTGGACCCTAACCCGCCCTGCTACTGCTGGTGTGCAGTGGACCCTAGCCAGTGGGCCTTGGCCTCTTaGGTGCCCCAAGCTGAGCTT +
Preference number: 3 (lower is better)
Translates to: SVDPNPPCYCWCAVDPSQWALAS*VPQAEL
Trigger: AAGCTCAGCTTGGGGCACCAAAGAGGCCAAGGCCCA...CTGGCTAGGGTCCACTGCACACCAGCAGTAGCAGGGCGGGTTAGGGTCCACAGA
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 72 bp GCAGTCCCACAGACCAAGCCCCAGCCAATGTTTCTGTaGACCCTAACCCGCCCTGCTACTGCTGGTGTGCAG +
Preference number: 3 (lower is better)
Translates to: AVPQTKPQPMFL*TLTRPATAGVQ
Trigger: CTGCACACCAGCAGTAGCAGGGCGGGTTAGGGTCCACAGAAACATTGGCTGGGGCTTGGTCTGTGGGACTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR CAA 90 bp AGAGAGCGGCAGAGGTTCCAGGGCCTGAACCTAGCCAGTAGGAGCAGGTGGCCTTGGGAGAAGGCTGCTTaGGACAGACTGTCATGGCAG +
Preference number: 3 (lower is better)
Translates to: RERQRFQGLNLASRSRWPWEKAA*DRLSWQ
Trigger: CTGCCATGACAGTCTGTCCAAAGCAGCCTTCTCCCA...AGGCCACCTGCTCCTACTGGCTAGGTTCAGGCCCTGGAACCTCTGCCGCTCTCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR TCA 72 bp AGCAGGTGGCCTTTGGCAGTGAGGACACCGTGGAGCTaGCATGTAGAGGTGCCCCCACAAGTCCCACAGTCT +
Preference number: 3 (lower is better)
Translates to: SRWPLAVRTPWS*HVEVPPQVPQS
Trigger: AGACTGTGGGACTTGTGGGGGCACCTCTACATGTCAGCTCCACGGTGTCCTCACTGCCAAAGGCCACCTGCT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR GCA 72 bp TCTTTGGTGCCCCAAGCTGAGCTTGCAGGGAGGCTCTaGTCTGTGTGGCAAGCCTCTCTCCTACATGGCACC +
Preference number: 3 (lower is better)
Translates to: SLVPQAELAGRL*SVWQASLLHGT
Trigger: GGTGCCATGTAGGAGAGAGGCTTGCCACACAGAGCAGAGCCTCCCTGCAAGCTCAGCTTGGGGCACCAAAGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 72 bp ACAGGGACCATTGTAGAGAGTGGGCCTTGGCCTCTTTaGTGCCCCAAGCTGAGCTTGCAGGGAGGCTCTGCT +
Preference number: 3 (lower is better)
Translates to: TGTIVESGPWPL*CPKLSLQGGSA
Trigger: AGCAGAGCCTCCCTGCAAGCTCAGCTTGGGGCACCAAAGAGGCCAAGGCCCACTCTCTACAATGGTCCCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 72 bp CTCTCCGTGCCATTTGAGCAGTCCTCTCCAGGTGGTTaGGACACTCCTAGCTCCAGCCTGTCCAGGGATGAC +
Preference number: 3 (lower is better)
Translates to: LSVPFEQSSPGG*DTPSSSLSRDD
Trigger: GTCATCCCTGGACAGGCTGGAGCTAGGAGTGTCCCAACCACCTGGAGAGGACTGCTCAAATGGCACGGAGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR CAA 90 bp AGAGGGCAACAGATCCCATTGCAGAAGGTTGGGAGCCACCATGTGGTTGCTGGGAGAGGCCCCTGCCCCTaGGGAACATGCACTGCTGTA +
Preference number: 3 (lower is better)
Translates to: RGQQIPLQKVGSHHVVAGRGPCP*GTCTAV
Trigger: TACAGCAGTGCATGTTCCCAAGGGGCAGGGGCCTCT...CCCAGCAACCACATGGTGGCTCCCAACCTTCTGCAATGGGATCTGTTGCCCTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR CAA 90 bp CCCACAAGTCCCACAGTCTGGGCTAAGAATGGTACAGAACTGGTGGTTTCCCACTGCCCCAAGCTGAGCTaGCAGGGAGGCTCTGCTCTG +
Preference number: 3 (lower is better)
Translates to: PTSPTVWAKNGTELVVSHCPKLS*QGGSAL
Trigger: CAGAGCAGAGCCTCCCTGCAAGCTCAGCTTGGGGCA...GTGGGAAACCACCAGTTCTGTACCATTCTTAGCCCAGACTGTGGGACTTGTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 72 bp AATGTTTCTGTGGACCCTAACCCGCCCTGCTACTGCTaGTGTGCAGTGGACCCTAGCCAGCCCAGTGCAATG +
Preference number: 3 (lower is better)
Translates to: NVSVDPNPPCYC*CAVDPSQPSAM
Trigger: CATTGCACTGGGCTGGCTAGGGTCCACTGCACACCAGCAGTAGCAGGGCGGGTTAGGGTCCACAGAAACATT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR CAA 90 bp CCCACAAGTCCCACAGTCTGGGCTAAGAATGGTACAGAACTGGTGGTTTCCCACTTGGGTGGCTGTCCCTaGCCTGTCAGTCAGCAGGGT +
Preference number: 3 (lower is better)
Translates to: PTSPTVWAKNGTELVVSHLGGCP*PVSQQG
Trigger: ACCCTGCTGACTGACAGGCAAGGGACAGCCACCCAA...GTGGGAAACCACCAGTTCTGTACCATTCTTAGCCCAGACTGTGGGACTTGTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR GCA 72 bp CTTACAGAGGGCCACTGCATGGACAAGCCCCACAACTaGACACGTGGCCTGTACATGGTCACGTGGGGATAT +
Preference number: 3 (lower is better)
Translates to: LTEGHCMDKPHN*TRGLYMVTWGY
Trigger: ATATCCCCACGTGACCATGTACAGGCCACGTGTGCAGTTGTGGGGCTTGTCCATGCAGTGGCCCTCTGTAAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR GCA 72 bp GAGGCTATGCCGGGGCCTAGCAAACACAGAAGTGGATaGTCACAGTCAGCTATTGGATGGATCACAGGGCCC +
Preference number: 3 (lower is better)
Translates to: EAMPGPSKHRSG*SQSAIGWITGP
Trigger: GGGCCCTGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCATAGCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 72 bp TCAGTCAGCAGGGTCAGGACAGTGGCTCAGGGTTCTTaGGGCCTAGCACATGGTTTATCAGCCCACACTAGC +
Preference number: 3 (lower is better)
Translates to: SVSRVRTVAQGS*GLAHGLSAHTS
Trigger: GCTAGTGTGGGCTGATAAACCATGTGCTAGGCCCCAAGAACCCTGAGCCACTGTCCTGACCCTGCTGACTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 72 bp TGCTACCTTACAGGGACCATTGTAGAGAGTGGGCCTTaGCCTCTTTGGTGCCCCAAGCTGAGCTTGCAGGGA +
Preference number: 3 (lower is better)
Translates to: CYLTGTIVESGP*PLWCPKLSLQG
Trigger: TCCCTGCAAGCTCAGCTTGGGGCACCAAAGAGGCCAAGGCCCACTCTCTACAATGGTCCCTGTAAGGTAGCA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 72 bp ACGTTAAGAGGCCCACCCTGTGCAACCCTGGGGTTCTaGCCCTCTCATTTCTCACTGCTACCTTACAGGGAC +
Preference number: 3 (lower is better)
Translates to: TLRGPPCATLGF*PSHFSLLPYRD
Trigger: GTCCCTGTAAGGTAGCAGTGAGAAATGAGAGGGCCAGAACCCCAGGGTTGCACAGGGTGGGCCTCTTAACGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR GCA 72 bp TTTTACTCCTCTTATTGGGCTTGGGTGGCTGTCCCTTaGCTGTCAGTCAGCAGGGTCAGGACAGTGGCTCAG +
Preference number: 3 (lower is better)
Translates to: FYSSYWAWVAVP*LSVSRVRTVAQ
Trigger: CTGAGCCACTGTCCTGACCCTGCTGACTGACAGGCAAGGGACAGCCACCCAAGCCCAATAAGAGGAGTAAAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 72 bp CCCCAAGCTGAGCTTGCAGGGAGGCTCTGCTCTGTGTaGCAAGCCTCTCTCCTACATGGCACCTTATATCTA +
Preference number: 3 (lower is better)
Translates to: PQAELAGRLCSV*QASLLHGTLYL
Trigger: TAGATATAAGGTGCCATGTAGGAGAGAGGCTTGCCACACAGAGCAGAGCCTCCCTGCAAGCTCAGCTTGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 72 bp TGGACAAGCCCCACAACTGCACACGTGGCCTGTACATaGTCACGTGGGGATATTGGCATGCAGTGTCTTCAG +
Preference number: 3 (lower is better)
Translates to: WTSPTTAHVACT*SRGDIGMQCLQ
Trigger: CTGAAGACACTGCATGCCAATATCCCCACGTGACCATGTACAGGCCACGTGTGCAGTTGTGGGGCTTGTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 72 bp GAGATGGAGATGATGATCTGCTGGGCCTGCACTGGGTaGGCTCTGTATGTGCTGGTGGAGTATGCAGACAAG +
Preference number: 3 (lower is better)
Translates to: EMEMMICWACTG*ALYVLVEYADK
Trigger: CTTGTCTGCATACTCCACCAGCACATACAGAGCCCACCCAGTGCAGGCCCAGCAGATCATCATCTCCATCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR GCA 72 bp GGAAGACCAAATGAGAACGTTAAGAGGCCCACCCTGTaGAACCCTGGGGTTCTGGCCCTCTCATTTCTCACT +
Preference number: 3 (lower is better)
Translates to: GRPNENVKRPTL*NPGVLALSFLT
Trigger: AGTGAGAAATGAGAGGGCCAGAACCCCAGGGTTGCACAGGGTGGGCCTCTTAACGTTCTCATTTGGTCTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR GCA 72 bp CTGGTATCTGAGATGGAGATGATGATCTGCTGGGCCTaGACTGGGTGGGCTCTGTATGTGCTGGTGGAGTAT +
Preference number: 3 (lower is better)
Translates to: LVSEMEMMICWA*TGWALYVLVEY
Trigger: ATACTCCACCAGCACATACAGAGCCCACCCAGTGCAGGCCCAGCAGATCATCATCTCCATCTCAGATACCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR GCA 72 bp GATCCCATTGCAGAAGGTTGGGAGCCACCATGTGGTTaGTGGGAACTGAACTCAACCCTTGAGTCATCCCTC +
Preference number: 3 (lower is better)
Translates to: DPIAEGWEPPCG*WELNSTLESSL
Trigger: GAGGGATGACTCAAGGGTTGAGTTCAGTTCCCAGCAACCACATGGTGGCTCCCAACCTTCTGCAATGGGATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR GCA 72 bp TCTTCAGACACACCAGAAGAGGGCAACAGATCCCATTaGAGAAGGTTGGGAGCCACCATGTGGTTGCTGGGA +
Preference number: 3 (lower is better)
Translates to: SSDTPEEGNRSH*RRLGATMWLLG
Trigger: TCCCAGCAACCACATGGTGGCTCCCAACCTTCTGCAATGGGATCTGTTGCCCTCTTCTGGTGTGTCTGAAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 72 bp ATAGACAAGACTTCCTGCATGTTTATCCTTAGCTCCTaGGTGCAGAGGCCCCTGCCCCTTGGGAACATGCAC +
Preference number: 3 (lower is better)
Translates to: IDKTSCMFILSS*VQRPLPLGNMH
Trigger: GTGCATGTTCCCAAGGGGCAGGGGCCTCTGCACCCAGGAGCTAAGGATAAACATGCAGGAAGTCTTGTCTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 72 bp TTCAAGAGTTCCTTCTGGCATAATGGCCTCCAGGCATaGACTGCAGGCTGCCAGGAGAACAGCTTACCTGCA +
Preference number: 3 (lower is better)
Translates to: FKSSFWHNGLQA*TAGCQENSLPA
Trigger: TGCAGGTAAGCTGTTCTCCTGGCAGCCTGCAGTCCATGCCTGGAGGCCATTATGCCAGAAGGAACTCTTGAA
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 72 bp GCTGGGCCTGCACTGGGTGGGCTCTGTATGTGCTGGTaGAGTATGCAGACAAGGCAATTTTCAAGAGTTCCT +
Preference number: 3 (lower is better)
Translates to: AGPALGGLCMCW*SMQTRQFSRVP
Trigger: AGGAACTCTTGAAAATTGCCTTGTCTGCATACTCCACCAGCACATACAGAGCCCACCCAGTGCAGGCCCAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 72 bp CCCATTGCAGAAGGTTGGGAGCCACCATGTGGTTGCTaGGAACTGAACTCAACCCTTGAGTCATCCCTCCAA +
Preference number: 3 (lower is better)
Translates to: PIAEGWEPPCGC*ELNSTLESSLQ
Trigger: TTGGAGGGATGACTCAAGGGTTGAGTTCAGTTCCCAGCAACCACATGGTGGCTCCCAACCTTCTGCAATGGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR CAA 90 bp GCAGGGAGGCTCTGCTCTGTGTGGCAAGCCTCTCTCCTACATGGCACCTTATATTTTTTACTCCTCTTATaGGGCTTGGGTGGCTGTCCC +
Preference number: 3 (lower is better)
Translates to: AGRLCSVWQASLLHGTLYFLLLL*GLGGCP
Trigger: GGGACAGCCACCCAAGCCCAATAAGAGGAGTAAAAA...ATATAAGGTGCCATGTAGGAGAGAGGCTTGCCACACAGAGCAGAGCCTCCCTGC
53% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR CAA 90 bp TCTGTGGACCCTAACCCGCCCTGCTACTGCTGGTGTGCAGTGGACCCTAGCCAGGCATGGCAGTTTTGTTaGTACTGGACCTGTATATTT +
Preference number: 3 (lower is better)
Translates to: SVDPNPPCYCWCAVDPSQAWQFC*YWTCIF
Trigger: AAATATACAGGTCCAGTACAAACAAAACTGCCATGC...CTGGCTAGGGTCCACTGCACACCAGCAGTAGCAGGGCGGGTTAGGGTCCACAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR TCA 72 bp GTCTGCCCAGTCCCCCAAGGCACTTCCCCGCTTAACTaGCAGGTGTCCTTGGAATCTAATTCCTCTATGAAC +
Preference number: 3 (lower is better)
Translates to: VCPVPQGTSPLN*QVSLESNSSMN
Trigger: GTTCATAGAGGAATTAGATTCCAAGGACACCTGTCAGTTAAGCGGGGAAGTGCCTTGGGGGACTGGGCAGAC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR GCA 72 bp GCCCAGTGCAATGGGTCAACAATAGACAAGACTTCCTaGATGTTTATCCTTAGCTCCTGGGTGCAGAGGCCC +
Preference number: 3 (lower is better)
Translates to: AQCNGSTIDKTS*MFILSSWVQRP
Trigger: GGGCCTCTGCACCCAGGAGCTAAGGATAAACATGCAGGAAGTCTTGTCTATTGTTGACCCATTGCACTGGGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR GCA 72 bp TGGGCTAAGAATGGTACAGAACTGGTGGTTTCCCACTaGATCCTGGTGGGCTCTCAGAGGCTTCAGTATGCA +
Preference number: 3 (lower is better)
Translates to: WAKNGTELVVSH*ILVGSQRLQYA
Trigger: TGCATACTGAAGCCTCTGAGAGCCCACCAGGATGCAGTGGGAAACCACCAGTTCTGTACCATTCTTAGCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 72 bp TCTGCTGGGCCTGCACTGGGTGGGCTCTGTATGTGCTaGTGGAGTATGCAGACAAGGCAATTTTCAAGAGTT +
Preference number: 3 (lower is better)
Translates to: SAGPALGGLCMC*WSMQTRQFSRV
Trigger: AACTCTTGAAAATTGCCTTGTCTGCATACTCCACCAGCACATACAGAGCCCACCCAGTGCAGGCCCAGCAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR CAA 90 bp CCAGAGCTTGTGTCTCTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATTGTAGAGAGTGGGCCTaGGCCTCTTTGGTGCCCCAA +
Preference number: 3 (lower is better)
Translates to: PELVSLAAYVSEDGLVGHCREWA*ASLVPQ
Trigger: TTGGGGCACCAAAGAGGCCAAGGCCCACTCTCTACA...ATGGCCAACTAGGCCATCTTCTGATACATATGCAGCTAGAGACACAAGCTCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR CAA 90 bp CCCACAAGTCCCACAGTCTGGGCTAAGAATGGTACAGAACTGGTGGTTTCCCACTCAACTGACAAGTACTaGGACCTCTCCGTGCCATTT +
Preference number: 3 (lower is better)
Translates to: PTSPTVWAKNGTELVVSHSTDKY*DLSVPF
Trigger: AAATGGCACGGAGAGGTCCAAGTACTTGTCAGTTGA...GTGGGAAACCACCAGTTCTGTACCATTCTTAGCCCAGACTGTGGGACTTGTGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR GCA 72 bp ATAGCTCGACATCTCCAGGCTGCCTGCTTCCCACCCTaGCTCTCAGACACAAATTACAGGTACCTGAAAAAG +
Preference number: 3 (lower is better)
Translates to: IARHLQAACFPP*LSDTNYRYLKK
Trigger: CTTTTTCAGGTACCTGTAATTTGTGTCTGAGAGGCAGGGTGGGAAGCAGGCAGCCTGGAGATGTCGAGCTAT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 72 bp GCTGGTGTGCAGTGGACCCTAGCCAGCCCAGTGCAATaGGTCAACAATAGACAAGACTTCCTGCATGTTTAT +
Preference number: 3 (lower is better)
Translates to: AGVQWTLASPVQ*VNNRQDFLHVY
Trigger: ATAAACATGCAGGAAGTCTTGTCTATTGTTGACCCATTGCACTGGGCTGGCTAGGGTCCACTGCACACCAGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 72 bp CTTTGGTGTCCTCCGCTAGGACATCTCACCGTATCCTaGCATCCCAGTGGAAGAGCTTTTCAAGCTACTTAC +
Preference number: 3 (lower is better)
Translates to: LWCPPLGHLTVS*HPSGRAFQATY
Trigger: GTAAGTAGCTTGAAAAGCTCTTCCACTGGGATGCCAGGATACGGTGAGATGTCCTAGCGGAGGACACCAAAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 72 bp CGTGCACAACCTGGATTACTACAAGAAGACCACAAGTaGCCTGCTACCTGTGAAGTGGATGGAATCAGAGGC +
Preference number: 3 (lower is better)
Translates to: RAQPGLLQEDHK*PATCEVDGIRG
Trigger: GCCTCTGATTCCATCCACTTCACAGGTAGCAGGCCACTTGTGGTCTTCTTGTAGTAATCCAGGTTGTGCACG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 72 bp AGAATGGTACAGAACTGGTGGTTTCCCACTGCATCCTaGTGGGCTCTCAGAGGCTTCAGTATGCATGTGACA +
Preference number: 3 (lower is better)
Translates to: RMVQNWWFPTAS*WALRGFSMHVT
Trigger: TGTCACATGCATACTGAAGCCTCTGAGAGCCCACCAGGATGCAGTGGGAAACCACCAGTTCTGTACCATTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 72 bp GTAGCTAGGAGCATCGGCAGTTTTGAGCTACCTATGTaGGTGCTGGGAATCAAACGTGGTCCTCTGAAAGAG +
Preference number: 3 (lower is better)
Translates to: VARSIGSFELPM*VLGIKRGPLKE
Trigger: CTCTTTCAGAGGACCACGTTTGATTCCCAGCACCCACATAGGTAGCTCAAAACTGCCGATGCTCCTAGCTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR CAA 90 bp TTCCAGGGCCTGAACCTAGCCAGTAGGAGCAGGTGGCCTTTGGCAGTGAGGACATTGAGTTTTTACAAGTaGTTTTGCTGCAGGCTTAAC +
Preference number: 3 (lower is better)
Translates to: FQGLNLASRSRWPLAVRTLSFYK*FCCRLN
Trigger: GTTAAGCCTGCAGCAAAACAACTTGTAAAAACTCAA...TGTCCTCACTGCCAAAGGCCACCTGCTCCTACTGGCTAGGTTCAGGCCCTGGAA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR GCA 72 bp AAGGTCCTATTATGGCCAATGTTTCTGAACTTGAGCTaGCTGCTGACCCCAAGTAGGAACTATCCAGGACCC +
Preference number: 3 (lower is better)
Translates to: KVLLWPMFLNLS*LLTPSRNYPGP
Trigger: GGGTCCTGGATAGTTCCTACTTGGGGTCAGCAGGCAGCTCAAGTTCAGAAACATTGGCCATAATAGGACCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR GCA 72 bp TGGAAAGAGAGGCCCATTGGTCTTGCAAACTTTTTATaGCTCAGTACAGGGGAATGCCAGGGCCAAGAAGTG +
Preference number: 3 (lower is better)
Translates to: WKERPIGLANFL*LSTGECQGQEV
Trigger: CACTTCTTGGCCCTGGCATTCCCCTGTACTGAGGCATAAAAAGTTTGCAAGACCAATGGGCCTCTCTTTCCA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR GCA 72 bp GCAGGACAGCAAAGCAAACTGAAATTGAGTCCAACGTaGCACTTTCCCACATCTGGGTACTACTTCTGGGCA +
Preference number: 3 (lower is better)
Translates to: AGQQSKLKLSPT*HFPTSGYYFWA
Trigger: TGCCCAGAAGTAGTACCCAGATGTGGGAAAGTGGCACGTTGGACTCAATTTCAGTTTGCTTTGCTGTCCTGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 72 bp AGGGAGCAAGATACTCCATGGGGCTCACTAGTAAACTaGCAAGAACAGGCTGAGAAGCAAGGGACTTTTCTG +
Preference number: 3 (lower is better)
Translates to: REQDTPWGSLVN*QEQAEKQGTFL
Trigger: CAGAAAAGTCCCTTGCTTCTCAGCCTGTTCTTGCCAGTTTACTAGTGAGCCCCATGGAGTATCTTGCTCCCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 72 bp CGGATTGCTTGGTGTCTTCAGGAGAAGGTCCTATTATaGCCAATGTTTCTGAACTTGAGCTGCCTGCTGACC +
Preference number: 3 (lower is better)
Translates to: RIAWCLQEKVLL*PMFLNLSCLLT
Trigger: GGTCAGCAGGCAGCTCAAGTTCAGAAACATTGGCCATAATAGGACCTTCTCCTGAAGACACCAAGCAATCCG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR TCA 72 bp GCTGCTTTGGACAGACTGTCATGGCAGAAGATACTGTaGAGATGCTGTTGGACCTGGTATCTGAGATGGAGA +
Preference number: 3 (lower is better)
Translates to: AALDRLSWQKIL*RCCWTWYLRWR
Trigger: TCTCCATCTCAGATACCAGGTCCAACAGCATCTTCACAGTATCTTCTGCCATGACAGTCTGTCCAAAGCAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR GCA 72 bp GATCCCATTACAGATGGTTGTGAGCCACCATGTAGTTaGTGGGAATTGAACTCAGGACCTCAAGAAGAGTCT +
Preference number: 3 (lower is better)
Translates to: DPITDGCEPPCS*WELNSGPQEES
Trigger: AGACTCTTCTTGAGGTCCTGAGTTCAATTCCCAGCAACTACATGGTGGCTCACAACCATCTGTAATGGGATC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 72 bp CAACTGACACTTGGTAAGACTGGGAGAAGGCTGCTTTaGACAGACTGTCATGGCAGAAGATACTGTGAAGAT +
Preference number: 3 (lower is better)
Translates to: QLTLGKTGRRLL*TDCHGRRYCED
Trigger: ATCTTCACAGTATCTTCTGCCATGACAGTCTGTCCAAAGCAGCCTTCTCCCAGTCTTACCAAGTGTCAGTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 72 bp GGTGGCCTGGACATAAAATACAAGCTGTGTCTGCTGTaGTACAAGTTGAACAGAAGACAGTTACTGGGTGGA +
Preference number: 3 (lower is better)
Translates to: GGLDIKYKLCLL*YKLNRRQLLGG
Trigger: TCCACCCAGTAACTGTCTTCTGTTCAACTTGTACCACAGCAGACACAGCTTGTATTTTATGTCCAGGCCACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR-3UTR CAA 90 bp AGGCATTACCACCTGAGAGGATGCAGAGAACAGCTTTACGACTATATCTTTAAACCAATGTTTCTGAACTaGAGCTGCCTGCTGACCCCA +
Preference number: 3 (lower is better)
Translates to: RHYHLRGCREQLYDYIFKPMFLN*SCLLTP
Trigger: TGGGGTCAGCAGGCAGCTCAAGTTCAGAAACATTGG...TTTAAAGATATAGTCGTAAAGCTGTTCTCTGCATCCTCTCAGGTGGTAATGCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR GCA 72 bp TCCTCTATGAACTTCAAATGTAGCCCTTATCCGGATTaGTTGGTGTCTTCAGGAGAAGGTCCTATTATGGCC +
Preference number: 3 (lower is better)
Translates to: SSMNFKCSPYPD*LVSSGEGPIMA
Trigger: GGCCATAATAGGACCTTCTCCTGAAGACACCAAGCAATCCGGATAAGGGCTACATTTGAAGTTCATAGAGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 72 bp ACTGGCAAGAACAGGCTGAGAAGCAAGGGACTTTTCTaGCATGGCAGTTTTGTTTGTACTGGACCTGTATAT +
Preference number: 3 (lower is better)
Translates to: TGKNRLRSKGLF*HGSFVCTGPVY
Trigger: ATATACAGGTCCAGTACAAACAAAACTGCCATGCCAGAAAAGTCCCTTGCTTCTCAGCCTGTTCTTGCCAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 72 bp AGAGCTTGTGTCTCTAGCTGCATATGTATCAGAAGATaGCCTAGTTGGCCATTATTGGAAAGAGAGGCCCAT +
Preference number: 3 (lower is better)
Translates to: RACVSSCICIRR*PSWPLLEREAH
Trigger: ATGGGCCTCTCTTTCCAATAATGGCCAACTAGGCCATCTTCTGATACATATGCAGCTAGAGACACAAGCTCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 72 bp CAACTGAATGCTGGGTCTAAGTGCGTTTATTTCTGGTaGCCTGGACATAAAATACAAGCTGTGTCTGCTGTG +
Preference number: 3 (lower is better)
Translates to: QLNAGSKCVYFW*PGHKIQAVSAV
Trigger: CACAGCAGACACAGCTTGTATTTTATGTCCAGGCCACCAGAAATAAACGCACTTAGACCCAGCATTCAGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR TCA 72 bp ACGATGACACCATTGCATACACTAGCAAGATTTTGCTaGAAGGACCCAGATATAGCTGTCTCTTGTGAGGCT +
Preference number: 3 (lower is better)
Translates to: TMTPLHTLARFC*KDPDIAVSCEA
Trigger: AGCCTCACAAGAGACAGCTATATCTGGGTCCTTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTCATCGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 72 bp GCATATGTATCAGAAGATGGCCTAGTTGGCCATTATTaGAAAGAGAGGCCCATTGGTCTTGCAAACTTTTTA +
Preference number: 3 (lower is better)
Translates to: AYVSEDGLVGHY*KERPIGLANFL
Trigger: TAAAAAGTTTGCAAGACCAATGGGCCTCTCTTTCCAATAATGGCCAACTAGGCCATCTTCTGATACATATGC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR TCA 72 bp CCAAATGAAAACACTATCTGCCATATCAGCTCTTCTTaGCAACTGAATGCTGGGTCTAAGTGCGTTTATTTC +
Preference number: 3 (lower is better)
Translates to: PNENTICHISSS*QLNAGSKCVYF
Trigger: GAAATAAACGCACTTAGACCCAGCATTCAGTTGTCAAGAAGAGCTGATATGGCAGATAGTGTTTTCATTTGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR TCA 72 bp ACACACACACACCACACAGAGTTGGAAGAATACAACTaGATAAAATCGGGATTACAGTTACAAAGTCAGCAT +
Preference number: 3 (lower is better)
Translates to: THTHHTELEEYN*IKSGLQLQSQH
Trigger: ATGCTGACTTTGTAACTGTAATCCCGATTTTATTCAGTTGTATTCTTCCAACTCTGTGTGGTGTGTGTGTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CCA 72 bp CAAACCGGATCAGTAGAGGTAGATGATGAGCGTGACTaGAGAATTAGAAGTAAATGTCAGAAAGTCTTAAAT +
Preference number: 3 (lower is better)
Translates to: QTGSVEVDDERD*RIRSKCQKVLN
Trigger: ATTTAAGACTTTCTGACATTTACTTCTAATTCTCCAGTCACGCTCATCATCTACCTCTACTGATCCGGTTTG
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CCA 90 bp AGAGAGCGGCAGAGGTTCCAGGGCCTGAACCTAGCCAGTAGGAGCAGGTGGCCTATGGCGTGGAAGTGGTaGCTTCTCTCTGTCCCCACT +
Preference number: 4 (lower is better)
Translates to: RERQRFQGLNLASRSRWPMAWKW*LLSVPT
Trigger: AGTGGGGACAGAGAGAAGCCACCACTTCCACGCCAT...AGGCCACCTGCTCCTACTGGCTAGGTTCAGGCCCTGGAACCTCTGCCGCTCTCT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CCA 90 bp TTGGTGTCCTCCGCTAGGACATCTCACCGTATCCTGGCATCCCAGTGGAAGAGCTTTGTCCAGGCGGCCTaGGCGCAGAATGGCAGGGTC +
Preference number: 4 (lower is better)
Translates to: LVSSARTSHRILASQWKSFVQAA*AQNGRV
Trigger: GACCCTGCCATTCTGCGCCCAGGCCGCCTGGACAAA...GCTCTTCCACTGGGATGCCAGGATACGGTGAGATGTCCTAGCGGAGGACACCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CAA 72 bp TACAGGGACCATTGTAGAGAGTGGGCCTTGGCCTCTTaGGTGCCCCAAGCTGAGCTTGCAGGGAGGCTCTGC +
Preference number: 4 (lower is better)
Translates to: YRDHCREWALAS*VPQAELAGRLC
Trigger: GCAGAGCCTCCCTGCAAGCTCAGCTTGGGGCACCAAAGAGGCCAAGGCCCACTCTCTACAATGGTCCCTGTA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR GCA 90 bp TCTGTGGACCCTAACCCGCCCTGCTACTGCTGGTGTGCAGTGGACCCTAGCCAGGACCCGAGCTGTAGCTaGCACGTTATTCAGATCATC +
Preference number: 4 (lower is better)
Translates to: SVDPNPPCYCWCAVDPSQDPSCS*HVIQII
Trigger: GATGATCTGAATAACGTGGCAGCTACAGCTCGGGTC...CTGGCTAGGGTCCACTGCACACCAGCAGTAGCAGGGCGGGTTAGGGTCCACAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR GCA 90 bp AGAGAGCGGCAGAGGTTCCAGGGCCTGAACCTAGCCAGTAGGAGCAGGTGGCCTTCAATGCACAGTCCTTaGATCTGTTCCTCTGAGAGG +
Preference number: 4 (lower is better)
Translates to: RERQRFQGLNLASRSRWPSMHSP*ICSSER
Trigger: CCTCTCAGAGGAACAGATGCAAGGACTGTGCATTGA...AGGCCACCTGCTCCTACTGGCTAGGTTCAGGCCCTGGAACCTCTGCCGCTCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR GCA 90 bp TTTACTCCTCTTATTGGGCTTGGGTGGCTGTCCCTTGCCTGTCAGTCAGCAGGGTATGGCAACACGGTCTaGTGGGGGAGGCAAACCCAC +
Preference number: 4 (lower is better)
Translates to: FTPLIGLGWLSLACQSAGYGNTV*WGRQTH
Trigger: GTGGGTTTGCCTCCCCCAGCAGACCGTGTTGCCATA...CCCTGCTGACTGACAGGCAAGGGACAGCCACCCAAGCCCAATAAGAGGAGTAAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CCA 90 bp TTTACTCCTCTTATTGGGCTTGGGTGGCTGTCCCTTGCCTGTCAGTCAGCAGGGGCAATGGCGTGGAAGTaGTGGCTTCTCTCTGTCCCC +
Preference number: 4 (lower is better)
Translates to: FTPLIGLGWLSLACQSAGAMAWK*WLLSVP
Trigger: GGGGACAGAGAGAAGCCACCACTTCCACGCCATTGC...CCCTGCTGACTGACAGGCAAGGGACAGCCACCCAAGCCCAATAAGAGGAGTAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CCA 90 bp AGAGAGCGGCAGAGGTTCCAGGGCCTGAACCTAGCCAGTAGGAGCAGGTGGCCTTCCGGACACAATCTCTaGAGCAGCCACTTTCAGAAT +
Preference number: 4 (lower is better)
Translates to: RERQRFQGLNLASRSRWPSGHNL*SSHFQN
Trigger: ATTCTGAAAGTGGCTGCTCCAGAGATTGTGTCCGGA...AGGCCACCTGCTCCTACTGGCTAGGTTCAGGCCCTGGAACCTCTGCCGCTCTCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CAA 72 bp CGTGAGTCTGGCCTCTGCCAGGCTGGACATAGCCCCTaGGCGCATGAGCAGCTAGCTCTCCTAGTTAGTAAT +
Preference number: 4 (lower is better)
Translates to: RESGLCQAGHSP*AHEQLALLVSN
Trigger: ATTACTAACTAGGAGAGCTAGCTGCTCATGCGCCAAGGGGCTATGTCCAGCCTGGCAGAGGCCAGACTCACG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CCA 90 bp TTTACTCCTCTTATTGGGCTTGGGTGGCTGTCCCTTGCCTGTCAGTCAGCAGGGCCCAGCCTTTCCTCCTaGTCTCCTTCAGAGGGCAAA +
Preference number: 4 (lower is better)
Translates to: FTPLIGLGWLSLACQSAGPSLSS*SPSEGK
Trigger: TTTGCCCTCTGAAGGAGACCAGGAGGAAAGGCTGGG...CCCTGCTGACTGACAGGCAAGGGACAGCCACCCAAGCCCAATAAGAGGAGTAAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CCA 90 bp TTCCAGGGCCTGAACCTAGCCAGTAGGAGCAGGTGGCCTTTGGCAGTGAGGACACAAAGCCTTCCCTTTTaGCAGAAGGCTGGACTTCTG +
Preference number: 4 (lower is better)
Translates to: FQGLNLASRSRWPLAVRTQSLPF*QKAGLL
Trigger: CAGAAGTCCAGCCTTCTGCCAAAAGGGAAGGCTTTG...TGTCCTCACTGCCAAAGGCCACCTGCTCCTACTGGCTAGGTTCAGGCCCTGGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CAA 72 bp GTCTTCAGACACACCAGAAGAGGGCAACAGATCCCATaGCAGAAGGTTGGGAGCCACCATGTGGTTGCTGGG +
Preference number: 4 (lower is better)
Translates to: VFRHTRRGQQIP*QKVGSHHVVAG
Trigger: CCCAGCAACCACATGGTGGCTCCCAACCTTCTGCAATGGGATCTGTTGCCCTCTTCTGGTGTGTCTGAAGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR TCA 90 bp TTGGTGTCCTCCGCTAGGACATCTCACCGTATCCTGGCATCCCAGTGGAAGAGCTTGCATCTGTTCCTCTaGGAGGGGATCTTGGTCTCT +
Preference number: 4 (lower is better)
Translates to: LVSSARTSHRILASQWKSLHLFL*EGILVS
Trigger: AGAGACCAAGATCCCCTCTCAGAGGAACAGATGCAA...GCTCTTCCACTGGGATGCCAGGATACGGTGAGATGTCCTAGCGGAGGACACCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR GCA 90 bp GCTACTGCTGGTGTGCAGTGGACCCTAGCCAGCCCAGTGCAATGGGTCAACAATTCGGTCAAACCTTCCTaGACGTCTCAAAGCAGGATC +
Preference number: 4 (lower is better)
Translates to: ATAGVQWTLASPVQWVNNSVKPS*TSQSRI
Trigger: GATCCTGCTTTGAGACGTGCAGGAAGGTTTGACCGA...ATTGTTGACCCATTGCACTGGGCTGGCTAGGGTCCACTGCACACCAGCAGTAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR GCA 90 bp AGAGAGCGGCAGAGGTTCCAGGGCCTGAACCTAGCCAGTAGGAGCAGGTGGCCTAACCCCAACAGCCTTTaGAATTCATCCTGTGTTTCA +
Preference number: 4 (lower is better)
Translates to: RERQRFQGLNLASRSRWPNPNSL*NSSCVS
Trigger: TGAAACACAGGATGAATTGCAAAGGCTGTTGGGGTT...AGGCCACCTGCTCCTACTGGCTAGGTTCAGGCCCTGGAACCTCTGCCGCTCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CCA 90 bp GCTACTGCTGGTGTGCAGTGGACCCTAGCCAGCCCAGTGCAATGGGTCAACAATGCAGGGAGCTGTTCATaGGATTTGCTGACTGTGGAT +
Preference number: 4 (lower is better)
Translates to: ATAGVQWTLASPVQWVNNAGSCS*DLLTVD
Trigger: ATCCACAGTCAGCAAATCCCATGAACAGCTCCCTGC...ATTGTTGACCCATTGCACTGGGCTGGCTAGGGTCCACTGCACACCAGCAGTAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CCA 90 bp CCCACAAGTCCCACAGTCTGGGCTAAGAATGGTACAGAACTGGTGGTTTCCCACGGCAGGGGTCTTCAATaGCACGGAGCCCGTTTTAGA +
Preference number: 4 (lower is better)
Translates to: PTSPTVWAKNGTELVVSHGRGLQ*HGARFR
Trigger: TCTAAAACGGGCTCCGTGCCATTGAAGACCCCTGCC...GTGGGAAACCACCAGTTCTGTACCATTCTTAGCCCAGACTGTGGGACTTGTGGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CCA 90 bp TCTGTGGACCCTAACCCGCCCTGCTACTGCTGGTGTGCAGTGGACCCTAGCCAGTTTCGGCACAACGTTTaGAGAATTCTTTCTCTGGCT +
Preference number: 4 (lower is better)
Translates to: SVDPNPPCYCWCAVDPSQFRHNV*RILSLA
Trigger: AGCCAGAGAAAGAATTCTCCAAACGTTGTGCCGAAA...CTGGCTAGGGTCCACTGCACACCAGCAGTAGCAGGGCGGGTTAGGGTCCACAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CCA 90 bp TTGGTGTCCTCCGCTAGGACATCTCACCGTATCCTGGCATCCCAGTGGAAGAGCTCTGAGAGGGGATCTTaGTCTCTTAGCAACCCCAAC +
Preference number: 4 (lower is better)
Translates to: LVSSARTSHRILASQWKSSERGS*SLSNPN
Trigger: GTTGGGGTTGCTAAGAGACCAAGATCCCCTCTCAGA...GCTCTTCCACTGGGATGCCAGGATACGGTGAGATGTCCTAGCGGAGGACACCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CCA 90 bp GCTACTGCTGGTGTGCAGTGGACCCTAGCCAGCCCAGTGCAATGGGTCAACAATAGTTCTGAACTGGTCTaGGTTGCGAACAGGTGCCAA +
Preference number: 4 (lower is better)
Translates to: ATAGVQWTLASPVQWVNNSSELV*VANRCQ
Trigger: TTGGCACCTGTTCGCAACCCAGACCAGTTCAGAACT...ATTGTTGACCCATTGCACTGGGCTGGCTAGGGTCCACTGCACACCAGCAGTAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CAA 72 bp TTTTTACTCCTCTTATTGGGCTTGGGTGGCTGTCCCTaGCCTGTCAGTCAGCAGGGTCAGGACAGTGGCTCA +
Preference number: 4 (lower is better)
Translates to: FLLLLLGLGGCP*PVSQQGQDSGS
Trigger: TGAGCCACTGTCCTGACCCTGCTGACTGACAGGCAAGGGACAGCCACCCAAGCCCAATAAGAGGAGTAAAAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CAA 72 bp CTAGCAAACACAGAAGTGGATGCTCACAGTCAGCTATaGGATGGATCACAGGGCCCCCAATGGAGGAGCCAG +
Preference number: 4 (lower is better)
Translates to: LANTEVDAHSQL*DGSQGPQWRSQ
Trigger: CTGGCTCCTCCATTGGGGGCCCTGTGATCCATCCAATAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR TCA 90 bp GCAGGGAGGCTCTGCTCTGTGTGGCAAGCCTCTCTCCTACATGGCACCTTATATCCAAACCAAGAGTTCTaGACTGGTCTGGGTTGCGAA +
Preference number: 4 (lower is better)
Translates to: AGRLCSVWQASLLHGTLYPNQEF*TGLGCE
Trigger: TTCGCAACCCAGACCAGTTCAGAACTCTTGGTTTGG...ATATAAGGTGCCATGTAGGAGAGAGGCTTGCCACACAGAGCAGAGCCTCCCTGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR GCA 90 bp TTCCAGGGCCTGAACCTAGCCAGTAGGAGCAGGTGGCCTTTGGCAGTGAGGACAGGCTTTTTCTTCTGCTaGGCCTGTTGTTTCATCAAG +
Preference number: 4 (lower is better)
Translates to: FQGLNLASRSRWPLAVRTGFFFC*ACCFIK
Trigger: CTTGATGAAACAACAGGCGCAGCAGAAGAAAAAGCC...TGTCCTCACTGCCAAAGGCCACCTGCTCCTACTGGCTAGGTTCAGGCCCTGGAA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CCA 90 bp TTGGTGTCCTCCGCTAGGACATCTCACCGTATCCTGGCATCCCAGTGGAAGAGCGCATTTGACACAGCCTaGTCAAATAACTCACGGAGC +
Preference number: 4 (lower is better)
Translates to: LVSSARTSHRILASQWKSAFDTA*SNNSRS
Trigger: GCTCCGTGAGTTATTTGACCAGGCTGTGTCAAATGC...GCTCTTCCACTGGGATGCCAGGATACGGTGAGATGTCCTAGCGGAGGACACCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CCA 90 bp GCAGGGAGGCTCTGCTCTGTGTGGCAAGCCTCTCTCCTACATGGCACCTTATATAGGGGGCTGAGTTCTTaGCTCGCTGAAAAACTTGTC +
Preference number: 4 (lower is better)
Translates to: AGRLCSVWQASLLHGTLYRGLSS*LAEKLV
Trigger: GACAAGTTTTTCAGCGAGCCAAGAACTCAGCCCCCT...ATATAAGGTGCCATGTAGGAGAGAGGCTTGCCACACAGAGCAGAGCCTCCCTGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CAA 72 bp CATCAACTGACAAGTACTTGGACCTCTCCGTGCCATTaGAGCAGTCCTCTCCAGGTGGTTGGGACACTCCTA +
Preference number: 4 (lower is better)
Translates to: HQLTSTWTSPCH*SSPLQVVGTLL
Trigger: TAGGAGTGTCCCAACCACCTGGAGAGGACTGCTCAAATGGCACGGAGAGGTCCAAGTACTTGTCAGTTGATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CAA 72 bp GACCGCATCCTCACTGTGACATCAACTGACAAGTACTaGGACCTCTCCGTGCCATTTGAGCAGTCCTCTCCA +
Preference number: 4 (lower is better)
Translates to: DRILTVTSTDKY*DLSVPFEQSSP
Trigger: TGGAGAGGACTGCTCAAATGGCACGGAGAGGTCCAAGTACTTGTCAGTTGATGTCACAGTGAGGATGCGGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CAA 72 bp ACAGAGTCTTCACCCACCAGAGTGATGTCTGGTTCTTaGGTGTCCTCCGCTAGGACATCTCACCGTATCCTG +
Preference number: 4 (lower is better)
Translates to: TESSPTRVMSGS*VSSARTSHRIL
Trigger: CAGGATACGGTGAGATGTCCTAGCGGAGGACACCAAAGAACCAGACATCACTCTGGTGGGTGAAGACTCTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR GCA 90 bp CCAGAGCTTGTGTCTCTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATGACCAGCTAGGAGGATaGCAGCTGGAGTCCCCAAAC +
Preference number: 4 (lower is better)
Translates to: PELVSLAAYVSEDGLVGHDQLGG*QLESPN
Trigger: GTTTGGGGACTCCAGCTGGCATCCTCCTAGCTGGTC...ATGGCCAACTAGGCCATCTTCTGATACATATGCAGCTAGAGACACAAGCTCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CCA 90 bp AGAGGGCAACAGATCCCATTGCAGAAGGTTGGGAGCCACCATGTGGTTGCTGGGATGCAGGTTAGAAGCTaGGCTACAATTCTTCGTTCC +
Preference number: 4 (lower is better)
Translates to: RGQQIPLQKVGSHHVVAGMQVRS*ATILRS
Trigger: GGAACGAAGAATTGTAGCCCAGCTTCTAACCTGCAT...CCCAGCAACCACATGGTGGCTCCCAACCTTCTGCAATGGGATCTGTTGCCCTCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CCA 90 bp TTTACTCCTCTTATTGGGCTTGGGTGGCTGTCCCTTGCCTGTCAGTCAGCAGGGGGAGAATTCTTTCTCTaGCTGCCTCATCTGGGATAC +
Preference number: 4 (lower is better)
Translates to: FTPLIGLGWLSLACQSAGGEFFL*LPHLGY
Trigger: GTATCCCAGATGAGGCAGCCAGAGAAAGAATTCTCC...CCCTGCTGACTGACAGGCAAGGGACAGCCACCCAAGCCCAATAAGAGGAGTAAA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR TCA 90 bp GCAGGGAGGCTCTGCTCTGTGTGGCAAGCCTCTCTCCTACATGGCACCTTATATATCTCTGTAAGCAGCTaGTTCACCACACGAACACTA +
Preference number: 4 (lower is better)
Translates to: AGRLCSVWQASLLHGTLYISVSS*FTTRTL
Trigger: TAGTGTTCGTGTGGTGAATCAGCTGCTTACAGAGAT...ATATAAGGTGCCATGTAGGAGAGAGGCTTGCCACACAGAGCAGAGCCTCCCTGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR TCA 90 bp TTGGTGTCCTCCGCTAGGACATCTCACCGTATCCTGGCATCCCAGTGGAAGAGCTCTTCAAAGTGCTTATaGCTGACCTTAAGCTCACCT +
Preference number: 4 (lower is better)
Translates to: LVSSARTSHRILASQWKSSSKCL*LTLSSP
Trigger: AGGTGAGCTTAAGGTCAGTCATAAGCACTTTGAAGA...GCTCTTCCACTGGGATGCCAGGATACGGTGAGATGTCCTAGCGGAGGACACCAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR TCA 90 bp GGCCTAGCACATGGTTTATCAGCCCACACTAGCAGATGTGGTTTTACTAACACATATCACGCAGGGGGCTaGGTTCTTGGCTCGCTGAAA +
Preference number: 4 (lower is better)
Translates to: GLAHGLSAHTSRCGFTNTYHAGG*VLGSLK
Trigger: TTTCAGCGAGCCAAGAACTCAGCCCCCTGCGTGATA...TGTGTTAGTAAAACCACATCTGCTAGTGTGGGCTGATAAACCATGTGCTAGGCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CCA 90 bp TTCCAGGGCCTGAACCTAGCCAGTAGGAGCAGGTGGCCTTTGGCAGTGAGGACACTTCAAACTTCACATTaGAAATCTGCAACTCTGTAC +
Preference number: 4 (lower is better)
Translates to: FQGLNLASRSRWPLAVRTLQTSH*KSATLY
Trigger: GTACAGAGTTGCAGATTTCCAATGTGAAGTTTGAAG...TGTCCTCACTGCCAAAGGCCACCTGCTCCTACTGGCTAGGTTCAGGCCCTGGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CCA 90 bp CCCACAAGTCCCACAGTCTGGGCTAAGAATGGTACAGAACTGGTGGTTTCCCACTGGTATACCTCTGGATaGCGCATGTGTATGAGCATT +
Preference number: 4 (lower is better)
Translates to: PTSPTVWAKNGTELVVSHWYTSG*RMCMSI
Trigger: AATGCTCATACACATGCGCCATCCAGAGGTATACCA...GTGGGAAACCACCAGTTCTGTACCATTCTTAGCCCAGACTGTGGGACTTGTGGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR GCA 90 bp AGAGGGCAACAGATCCCATTGCAGAAGGTTGGGAGCCACCATGTGGTTGCTGGGAACAGGTGCCAATATTaGCATTATAAGCTCATCTCT +
Preference number: 4 (lower is better)
Translates to: RGQQIPLQKVGSHHVVAGNRCQY*HYKLIS
Trigger: AGAGATGAGCTTATAATGGCAATATTGGCACCTGTT...CCCAGCAACCACATGGTGGCTCCCAACCTTCTGCAATGGGATCTGTTGCCCTCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CCA 90 bp GGCCTAGCACATGGTTTATCAGCCCACACTAGCAGATGTGGTTTTACTAACACAACGTCAGCAATGGCGTaGAAGTGGTGGCTTCTCTCT +
Preference number: 4 (lower is better)
Translates to: GLAHGLSAHTSRCGFTNTTSAMA*KWWLLS
Trigger: AGAGAGAAGCCACCACTTCCACGCCATTGCTGACGT...TGTGTTAGTAAAACCACATCTGCTAGTGTGGGCTGATAAACCATGTGCTAGGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CCA 90 bp CCCACAAGTCCCACAGTCTGGGCTAAGAATGGTACAGAACTGGTGGTTTCCCACCTGTACTCCTTGCTTTaGCTTTCTTTTGCAGAAGAG +
Preference number: 4 (lower is better)
Translates to: PTSPTVWAKNGTELVVSHLYSLL*LSFAEE
Trigger: CTCTTCTGCAAAAGAAAGCCAAAGCAAGGAGTACAG...GTGGGAAACCACCAGTTCTGTACCATTCTTAGCCCAGACTGTGGGACTTGTGGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CCA 90 bp CCAGAGCTTGTGTCTCTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCCAAGAGTTCTGAACTaGTCTGGGTTGCGAACAGGT +
Preference number: 4 (lower is better)
Translates to: PELVSLAAYVSEDGLVGHPRVLN*SGLRTG
Trigger: ACCTGTTCGCAACCCAGACCAGTTCAGAACTCTTGG...ATGGCCAACTAGGCCATCTTCTGATACATATGCAGCTAGAGACACAAGCTCTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CCA 90 bp TTTACTCCTCTTATTGGGCTTGGGTGGCTGTCCCTTGCCTGTCAGTCAGCAGGGTACATCTTCATCCAGTaGAGGTTTGGTGCCATTTTT +
Preference number: 4 (lower is better)
Translates to: FTPLIGLGWLSLACQSAGYIFIQ*RFGAIF
Trigger: AAAAATGGCACCAAACCTCCACTGGATGAAGATGTA...CCCTGCTGACTGACAGGCAAGGGACAGCCACCCAAGCCCAATAAGAGGAGTAAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CAA 72 bp TTCTGTGCCTACCAGGTAACATGGAGCACAGAATACTaGGCTTCCCAGAAGTGTATTCAGAGACTTGGCTGC +
Preference number: 4 (lower is better)
Translates to: FCAYQVTWSTEY*ASQKCIQRLGC
Trigger: GCAGCCAAGTCTCTGAATACACTTCTGGGAAGCCAAGTATTCTGTGCTCCATGTTACCTGGTAGGCACAGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CAA 72 bp CAGGAGAAGGTCCTATTATGGCCAATGTTTCTGAACTaGAGCTGCCTGCTGACCCCAAGTAGGAACTATCCA +
Preference number: 4 (lower is better)
Translates to: QEKVLLWPMFLN*SCLLTPSRNYP
Trigger: TGGATAGTTCCTACTTGGGGTCAGCAGGCAGCTCAAGTTCAGAAACATTGGCCATAATAGGACCTTCTCCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR TCA 90 bp TTTACTCCTCTTATTGGGCTTGGGTGGCTGTCCCTTGCCTGTCAGTCAGCAGGGATGGTTTTACTTTCTTaGAAGCGTCTTCAAAGTGCT +
Preference number: 4 (lower is better)
Translates to: FTPLIGLGWLSLACQSAGMVLLS*KRLQSA
Trigger: AGCACTTTGAAGACGCTTTCAAGAAAGTAAAACCAT...CCCTGCTGACTGACAGGCAAGGGACAGCCACCCAAGCCCAATAAGAGGAGTAAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR TCA 90 bp GGCCTAGCACATGGTTTATCAGCCCACACTAGCAGATGTGGTTTTACTAACACAGAGTTCTTGGCTCGCTaGAAAACTTGTCGAACAGCA +
Preference number: 4 (lower is better)
Translates to: GLAHGLSAHTSRCGFTNTEFLAR*KTCRTA
Trigger: TGCTGTTCGACAAGTTTTTCAGCGAGCCAAGAACTC...TGTGTTAGTAAAACCACATCTGCTAGTGTGGGCTGATAAACCATGTGCTAGGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR GCA 90 bp GGCCTAGCACATGGTTTATCAGCCCACACTAGCAGATGTGGTTTTACTAACACAGACCTTAAGCTCACCTaGTCCAACACCATTCTTCTG +
Preference number: 4 (lower is better)
Translates to: GLAHGLSAHTSRCGFTNTDLKLT*SNTILL
Trigger: CAGAAGAATGGTGTTGGAGCAGGTGAGCTTAAGGTC...TGTGTTAGTAAAACCACATCTGCTAGTGTGGGCTGATAAACCATGTGCTAGGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CCA 90 bp ATTTCTGGTGGCCTGGACATAAAATACAAGCTGTGTCTGCTGTGGTACAAGTTGGTGCTGGTATACCTCTaGATGGCGCATGTGTATGAG +
Preference number: 4 (lower is better)
Translates to: ISGGLDIKYKLCLLWYKLVLVYL*MAHVYE
Trigger: CTCATACACATGCGCCATCCAGAGGTATACCAGCAC...CAACTTGTACCACAGCAGACACAGCTTGTATTTTATGTCCAGGCCACCAGAAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CAA 72 bp CTTGTGAAGGGCACAGGTGAGCCAGTCATGAAAACCTaGGTTAAGAAACATTCCCAACCAAGATGCCAACAG +
Preference number: 4 (lower is better)
Translates to: LVKGTGEPVMKT*VKKHSQPRCQQ
Trigger: CTGTTGGCATCTTGGTTGGGAATGTTTCTTAACCAAGGTTTTCATGACTGGCTCACCTGTGCCCTTCACAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CAA 72 bp GTAAGATCATTGGCAGGACAGCAAAGCAAACTGAAATaGAGTCCAACGTGCCACTTTCCCACATCTGGGTAC +
Preference number: 4 (lower is better)
Translates to: VRSLAGQQSKLK*SPTCHFPTSGY
Trigger: GTACCCAGATGTGGGAAAGTGGCACGTTGGACTCAATTTCAGTTTGCTTTGCTGTCCTGCCAATGATCTTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR GCA 90 bp CCAGAGCTTGTGTCTCTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATCAACTCTGTACTCCTTaGTTTGGCTTTCTTTTGCAG +
Preference number: 4 (lower is better)
Translates to: PELVSLAAYVSEDGLVGHQLCTP*FGFLLQ
Trigger: CTGCAAAAGAAAGCCAAAGCAAGGAGTACAGAGTTG...ATGGCCAACTAGGCCATCTTCTGATACATATGCAGCTAGAGACACAAGCTCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CCA 90 bp GACTGGAGAATTAGAAGTAAATGTCAGAAAGTCTTAAATAGTGAATCTGAGCAGCTTCCCACAGCCTGGTaGTCCATGCAGGAGAACTCC +
Preference number: 4 (lower is better)
Translates to: DWRIRSKCQKVLNSESEQLPTAW*SMQENS
Trigger: GGAGTTCTCCTGCATGGACCACCAGGCTGTGGGAAG...CTGCTCAGATTCACTATTTAAGACTTTCTGACATTTACTTCTAATTCTCCAGTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CCA 90 bp GACTTTTCTGGCATGGCAGTTTTGTTTGTACTGGACCTGTATATTTGTAAAGCTCCTGTGTTTCAGAAGTaGGCTCAGCTCCCAGCCTTT +
Preference number: 4 (lower is better)
Translates to: DFSGMAVLFVLDLYICKAPVFQK*AQLPAF
Trigger: AAAGGCTGGGAGCTGAGCCCACTTCTGAAACACAGG...AGCTTTACAAATATACAGGTCCAGTACAAACAAAACTGCCATGCCAGAAAAGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR GCA 90 bp ATTTCTGGTGGCCTGGACATAAAATACAAGCTGTGTCTGCTGTGGTACAAGTTGCTCTTCATCTTGTCTTaGTCTTTTTGCCAGATGTCC +
Preference number: 4 (lower is better)
Translates to: ISGGLDIKYKLCLLWYKLLFILS*SFCQMS
Trigger: GGACATCTGGCAAAAAGAGCAAGACAAGATGAAGAG...CAACTTGTACCACAGCAGACACAGCTTGTATTTTATGTCCAGGCCACCAGAAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR GCA 90 bp ATTTCTGGTGGCCTGGACATAAAATACAAGCTGTGTCTGCTGTGGTACAAGTTGTATTCAGATCATCCATaGAGGTTAGAAGCTGGGCTA +
Preference number: 4 (lower is better)
Translates to: ISGGLDIKYKLCLLWYKLYSDHP*RLEAGL
Trigger: TAGCCCAGCTTCTAACCTGCATGGATGATCTGAATA...CAACTTGTACCACAGCAGACACAGCTTGTATTTTATGTCCAGGCCACCAGAAAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CAA 72 bp TCTATGAACTTCAAATGTAGCCCTTATCCGGATTGCTaGGTGTCTTCAGGAGAAGGTCCTATTATGGCCAAT +
Preference number: 4 (lower is better)
Translates to: SMNFKCSPYPDC*VSSGEGPIMAN
Trigger: ATTGGCCATAATAGGACCTTCTCCTGAAGACACCAAGCAATCCGGATAAGGGCTACATTTGAAGTTCATAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR GCA 90 bp CCAGAGCTTGTGTCTCTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATTTAATGTTGCATCATTaGCTCCAACATCTTCAAACT +
Preference number: 4 (lower is better)
Translates to: PELVSLAAYVSEDGLVGHLMLHH*LQHLQT
Trigger: AGTTTGAAGATGTTGGAGGCAATGATGCAACATTAA...ATGGCCAACTAGGCCATCTTCTGATACATATGCAGCTAGAGACACAAGCTCTGG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR GCA 90 bp GACTTTTCTGGCATGGCAGTTTTGTTTGTACTGGACCTGTATATTTGTAAAGCTAACTCACGGAGCTTCTaGTCAGACTCTCCAGAAACT +
Preference number: 4 (lower is better)
Translates to: DFSGMAVLFVLDLYICKANSRSF*SDSPET
Trigger: AGTTTCTGGAGAGTCTGAGCAGAAGCTCCGTGAGTT...AGCTTTACAAATATACAGGTCCAGTACAAACAAAACTGCCATGCCAGAAAAGTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR GCA 90 bp GGCCTAGCACATGGTTTATCAGCCCACACTAGCAGATGTGGTTTTACTAACACAAATCGTTCAATTCAATaGACAGTCCTTGCATCTGTT +
Preference number: 4 (lower is better)
Translates to: GLAHGLSAHTSRCGFTNTNRSIQ*TVLASV
Trigger: AACAGATGCAAGGACTGTGCATTGAATTGAACGATT...TGTGTTAGTAAAACCACATCTGCTAGTGTGGGCTGATAAACCATGTGCTAGGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CAA 72 bp TGCATATGTATCAGAAGATGGCCTAGTTGGCCATTATaGGAAAGAGAGGCCCATTGGTCTTGCAAACTTTTT +
Preference number: 4 (lower is better)
Translates to: CICIRRWPSWPL*EREAHWSCKLF
Trigger: AAAAAGTTTGCAAGACCAATGGGCCTCTCTTTCCAATAATGGCCAACTAGGCCATCTTCTGATACATATGCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CAA 72 bp AGTGCTAATCTAGGAGCTTCCCAGCCTCTGCTCCTCTaGTTAGTATTAGCAAACTCGCAATCTATATTTCTA +
Preference number: 4 (lower is better)
Translates to: SANLGASQPLLL*LVLANSQSIFL
Trigger: TAGAAATATAGATTGCGAGTTTGCTAATACTAACAAGAGGAGCAGAGGCTGGGAAGCTCCTAGATTAGCACT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR GCA 90 bp AGGCATTACCACCTGAGAGGATGCAGAGAACAGCTTTACGACTATATCTTTAAAGTTTCCTTTGCCCTTTaGCCTACCTTTCCTTTTCTT +
Preference number: 4 (lower is better)
Translates to: RHYHLRGCREQLYDYIFKVSFAL*PTFPFL
Trigger: AAGAAAAGGAAAGGTAGGGCAAAGGGCAAAGGAAAC...TTTAAAGATATAGTCGTAAAGCTGTTCTCTGCATCCTCTCAGGTGGTAATGCCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CCA 90 bp ATTTCTGGTGGCCTGGACATAAAATACAAGCTGTGTCTGCTGTGGTACAAGTTGAAAATAAAAACTTGCTaGCGTGTTTCTAAGCCATCC +
Preference number: 4 (lower is better)
Translates to: ISGGLDIKYKLCLLWYKLKIKTC*RVSKPS
Trigger: GGATGGCTTAGAAACACGCCAGCAAGTTTTTATTTT...CAACTTGTACCACAGCAGACACAGCTTGTATTTTATGTCCAGGCCACCAGAAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR GCA 90 bp GACTGGAGAATTAGAAGTAAATGTCAGAAAGTCTTAAATAGTGAATCTGAGCAGAATTCTTTCTCTGGCTaGCTCATCTGGGATACCCAA +
Preference number: 4 (lower is better)
Translates to: DWRIRSKCQKVLNSESEQNSFSG*LIWDTQ
Trigger: TTGGGTATCCCAGATGAGGCAGCCAGAGAAAGAATT...CTGCTCAGATTCACTATTTAAGACTTTCTGACATTTACTTCTAATTCTCCAGTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CCA 90 bp GACTGGAGAATTAGAAGTAAATGTCAGAAAGTCTTAAATAGTGAATCTGAGCAGAGGGTCAATGATATCTaGTCTATTGGTGGCAGCCAA +
Preference number: 4 (lower is better)
Translates to: DWRIRSKCQKVLNSESEQRVNDI*SIGGSQ
Trigger: TTGGCTGCCACCAATAGACCAGATATCATTGACCCT...CTGCTCAGATTCACTATTTAAGACTTTCTGACATTTACTTCTAATTCTCCAGTC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
3UTR CAA 72 bp GAGAAGCAAGGGACTTTTCTGGCATGGCAGTTTTGTTaGTACTGGACCTGTATATTTGTAAAGCTATATTTA +
Preference number: 4 (lower is better)
Translates to: EKQGTFLAWQFC*YWTCIFVKLYL
Trigger: TAAATATAGCTTTACAAATATACAGGTCCAGTACAAACAAAACTGCCATGCCAGAAAAGTCCCTTGCTTCTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS GCA 90 bp GGTGGTCCATGCAGGAGAACTCCACGAGGGGGCACGACACCAAGGTaGTGGTATACCTCTGGATGGCGCATGTGTATGAGCATTTTGCAG +
Preference number: 5 (lower is better)
Translates to: GGPCRRTPRGGTTPR*WYTSGWRMCMSILQ
Trigger: CTGCAAAATGCTCATACACATGCGCCATCCAGAGGTATACCAGCACCTTGGTGTCGTGCCCCCTCGTGGAGTTCTCCTGCATGGACCACC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS CCA 90 bp GGTCCATGCAGGAGAACTCCACGAGGGGGCACGACACCAAGGTGCTaGTATACCTCTGGATGGCGCATGTGTATGAGCATTTTGCAGACT +
Preference number: 5 (lower is better)
Translates to: GPCRRTPRGGTTPRC*YTSGWRMCMSILQT
Trigger: AGTCTGCAAAATGCTCATACACATGCGCCATCCAGAGGTATACCAGCACCTTGGTGTCGTGCCCCCTCGTGGAGTTCTCCTGCATGGACC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CAA 90 bp TTCCAGGGCCTGAACCTAGCCAGTAGGAGCAGGTGGCCTTTGGCAGTGAGGACAAGCTGTTCATGGGATTaGCTGACTGTGGATCTGGGT +
Preference number: 5 (lower is better)
Translates to: FQGLNLASRSRWPLAVRTSCSWD*LTVDLG
Trigger: ACCCAGATCCACAGTCAGCAAATCCCATGAACAGCT...TGTCCTCACTGCCAAAGGCCACCTGCTCCTACTGGCTAGGTTCAGGCCCTGGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CAA 90 bp AGAGAGCGGCAGAGGTTCCAGGGCCTGAACCTAGCCAGTAGGAGCAGGTGGCCTTGTTTCCTTTGCCCTTaGCCCTACCTTTCCTTTTCT +
Preference number: 5 (lower is better)
Translates to: RERQRFQGLNLASRSRWPCFLCP*PYLSFS
Trigger: AGAAAAGGAAAGGTAGGGCAAAGGGCAAAGGAAACA...AGGCCACCTGCTCCTACTGGCTAGGTTCAGGCCCTGGAACCTCTGCCGCTCTCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CAA 90 bp AGAGGGCAACAGATCCCATTGCAGAAGGTTGGGAGCCACCATGTGGTTGCTGGGCAAGTTCCCCTGCTATaGCGTGTGCAAGTAATGTCT +
Preference number: 5 (lower is better)
Translates to: RGQQIPLQKVGSHHVVAGQVPLL*RVQVMS
Trigger: AGACATTACTTGCACACGCAATAGCAGGGGAACTTG...CCCAGCAACCACATGGTGGCTCCCAACCTTCTGCAATGGGATCTGTTGCCCTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CAA 90 bp TTGGTGTCCTCCGCTAGGACATCTCACCGTATCCTGGCATCCCAGTGGAAGAGCTTAGTCCAGACTCATTaGCCACAGCCTTTGCTAGCA +
Preference number: 5 (lower is better)
Translates to: LVSSARTSHRILASQWKSLVQTH*PQPLLA
Trigger: TGCTAGCAAAGGCTGTGGCAAATGAGTCTGGACTAA...GCTCTTCCACTGGGATGCCAGGATACGGTGAGATGTCCTAGCGGAGGACACCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS CCA 90 bp ACGGAGCTTCTGCTCAGACTCTCCAGAAACTCCGGACACAATCTCTaGAGCAGCCACTTTCAGAATCGGCAAGTCAAGTTCCCCTGCTAT +
Preference number: 5 (lower is better)
Translates to: TELLLRLSRNSGHNL*SSHFQNRQVKFPCY
Trigger: ATAGCAGGGGAACTTGACTTGCCGATTCTGAAAGTGGCTGCTCCAGAGATTGTGTCCGGAGTTTCTGGAGAGTCTGAGCAGAAGCTCCGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CAA 90 bp GCAGGGAGGCTCTGCTCTGTGTGGCAAGCCTCTCTCCTACATGGCACCTTATATCAACCCCAACAGCCTTaGCAATTCATCCTGTGTTTC +
Preference number: 5 (lower is better)
Translates to: AGRLCSVWQASLLHGTLYQPQQP*QFILCF
Trigger: GAAACACAGGATGAATTGCAAAGGCTGTTGGGGTTG...ATATAAGGTGCCATGTAGGAGAGAGGCTTGCCACACAGAGCAGAGCCTCCCTGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CAA 90 bp GCAGGGAGGCTCTGCTCTGTGTGGCAAGCCTCTCTCCTACATGGCACCTTATATCTGAGCTGTTATTTCTaGTCTCAGGGCACAGAGAGA +
Preference number: 5 (lower is better)
Translates to: AGRLCSVWQASLLHGTLYLSCYF*SQGTER
Trigger: TCTCTCTGTGCCCTGAGACAAGAAATAACAGCTCAG...ATATAAGGTGCCATGTAGGAGAGAGGCTTGCCACACAGAGCAGAGCCTCCCTGC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS CCA 90 bp GCTAGGAGGATGCCAGCTGGAGTCCCCAAACCAAGAGTTCTGAACTaGTCTGGGTTGCGAACAGGTGCCAATATTGCCATTATAAGCTCA +
Preference number: 5 (lower is better)
Translates to: ARRMPAGVPKPRVLN*SGLRTGANIAIISS
Trigger: TGAGCTTATAATGGCAATATTGGCACCTGTTCGCAACCCAGACCAGTTCAGAACTCTTGGTTTGGGGACTCCAGCTGGCATCCTCCTAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CAA 90 bp TTCCAGGGCCTGAACCTAGCCAGTAGGAGCAGGTGGCCTTTGGCAGTGAGGACATGCTTTGGCTTTCTTTaGCAGAAGAGCTTCTATTTC +
Preference number: 5 (lower is better)
Translates to: FQGLNLASRSRWPLAVRTCFGFL*QKSFYF
Trigger: GAAATAGAAGCTCTTCTGCAAAAGAAAGCCAAAGCA...TGTCCTCACTGCCAAAGGCCACCTGCTCCTACTGGCTAGGTTCAGGCCCTGGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CAA 90 bp TTGGTGTCCTCCGCTAGGACATCTCACCGTATCCTGGCATCCCAGTGGAAGAGCTCTGTACTCCTTGCTTaGGCTTTCTTTTGCAGAAGA +
Preference number: 5 (lower is better)
Translates to: LVSSARTSHRILASQWKSSVLLA*AFFCRR
Trigger: TCTTCTGCAAAAGAAAGCCAAAGCAAGGAGTACAGA...GCTCTTCCACTGGGATGCCAGGATACGGTGAGATGTCCTAGCGGAGGACACCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS CCA 90 bp GAGGATGCCAGCTGGAGTCCCCAAACCAAGAGTTCTGAACTGGTCTaGGTTGCGAACAGGTGCCAATATTGCCATTATAAGCTCATCTCT +
Preference number: 5 (lower is better)
Translates to: EDASWSPQTKSSELV*VANRCQYCHYKLIS
Trigger: AGAGATGAGCTTATAATGGCAATATTGGCACCTGTTCGCAACCCAGACCAGTTCAGAACTCTTGGTTTGGGGACTCCAGCTGGCATCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CAA 90 bp GCAGGGAGGCTCTGCTCTGTGTGGCAAGCCTCTCTCCTACATGGCACCTTATATTTTCTTTTGTTTCCTTaGCCCTTTGCCCTACCTTTC +
Preference number: 5 (lower is better)
Translates to: AGRLCSVWQASLLHGTLYFLLFP*PFALPF
Trigger: GAAAGGTAGGGCAAAGGGCAAAGGAAACAAAAGAAA...ATATAAGGTGCCATGTAGGAGAGAGGCTTGCCACACAGAGCAGAGCCTCCCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS GCA 90 bp TGGTCTCCTTCAGAGGGCAAACCTTCAATCTCAGGCTTTTTCTTCTaGTGCGCCTGTTGTTTCATCAAGACCCTATTGACCGCACACATG +
Preference number: 5 (lower is better)
Translates to: WSPSEGKPSISGFFF*CACCFIKTLLTAHM
Trigger: CATGTGTGCGGTCAATAGGGTCTTGATGAAACAACAGGCGCAGCAGAAGAAAAAGCCTGAGATTGAAGGTTTGCCCTCTGAAGGAGACCA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CAA 90 bp CCCACAAGTCCCACAGTCTGGGCTAAGAATGGTACAGAACTGGTGGTTTCCCACTCCTGCTTTTTAGAGTaGCTTTGGTCATCTGATAGG +
Preference number: 5 (lower is better)
Translates to: PTSPTVWAKNGTELVVSHSCFLE*LWSSDR
Trigger: CCTATCAGATGACCAAAGCAACTCTAAAAAGCAGGA...GTGGGAAACCACCAGTTCTGTACCATTCTTAGCCCAGACTGTGGGACTTGTGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CAA 90 bp GCTACTGCTGGTGTGCAGTGGACCCTAGCCAGCCCAGTGCAATGGGTCAACAATTTTAATGTTGCATCATaGCCTCCAACATCTTCAAAC +
Preference number: 5 (lower is better)
Translates to: ATAGVQWTLASPVQWVNNFNVAS*PPTSSN
Trigger: GTTTGAAGATGTTGGAGGCAATGATGCAACATTAAA...ATTGTTGACCCATTGCACTGGGCTGGCTAGGGTCCACTGCACACCAGCAGTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CAA 90 bp CCAGAGCTTGTGTCTCTAGCTGCATATGTATCAGAAGATGGCCTAGTTGGCCATGGCTCGCTGAAAAACTaGTCGAACAGCACGTTCACT +
Preference number: 5 (lower is better)
Translates to: PELVSLAAYVSEDGLVGHGSLKN*SNSTFT
Trigger: AGTGAACGTGCTGTTCGACAAGTTTTTCAGCGAGCC...ATGGCCAACTAGGCCATCTTCTGATACATATGCAGCTAGAGACACAAGCTCTGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS TCA 90 bp ATTCCAGTGTCCACATATTTGCCACATCTGTTACTACTGAGGTACTaGATGACCCGCTGCTTCAGTTTCCTGTCTACGAAAACCCCGGGT +
Preference number: 5 (lower is better)
Translates to: IPVSTYLPHLLLLRY*MTRCFSFLSTKTPG
Trigger: ACCCGGGGTTTTCGTAGACAGGAAACTGAAGCAGCGGGTCATTCAGTACCTCAGTAGTAACAGATGTGGCAAATATGTGGACACTGGAAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS TCA 90 bp AAAACTTGCTGGCGTGTTTCTAAGCCATCCATCTCTGTAAGCAGCTaGTTCACCACACGAACACTAGCACCTGTTTCTCGGTCTGATCTC +
Preference number: 5 (lower is better)
Translates to: KTCWRVSKPSISVSS*FTTRTLAPVSRSDL
Trigger: GAGATCAGACCGAGAAACAGGTGCTAGTGTTCGTGTGGTGAATCAGCTGCTTACAGAGATGGATGGCTTAGAAACACGCCAGCAAGTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CAA 90 bp GGCCTAGCACATGGTTTATCAGCCCACACTAGCAGATGTGGTTTTACTAACACACTGAACTGGTCTGGGTaGCGAACAGGTGCCAATATT +
Preference number: 5 (lower is better)
Translates to: GLAHGLSAHTSRCGFTNTLNWSG*RTGANI
Trigger: AATATTGGCACCTGTTCGCAACCCAGACCAGTTCAG...TGTGTTAGTAAAACCACATCTGCTAGTGTGGGCTGATAAACCATGTGCTAGGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CAA 90 bp GACTGGAGAATTAGAAGTAAATGTCAGAAAGTCTTAAATAGTGAATCTGAGCAGCCCACAAAGAGCGTTTaGTCCAGGCGGCCTGGGCGC +
Preference number: 5 (lower is better)
Translates to: DWRIRSKCQKVLNSESEQPTKSV*SRRPGR
Trigger: GCGCCCAGGCCGCCTGGACAAAACGCTCTTTGTGGG...CTGCTCAGATTCACTATTTAAGACTTTCTGACATTTACTTCTAATTCTCCAGTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS TCA 90 bp TCCTCTCCGATACAAAGAGAGCAGGGAGCTGTTCATGGGATTTGCTaGCTGTGGATCTGGGTAATCTTCCATGTTCGAATCATCATCAGA +
Preference number: 5 (lower is better)
Translates to: SSPIQREQGAVHGIC*LWIWVIFHVRIIIR
Trigger: TCTGATGATGATTCGAACATGGAAGATTACCCAGATCCACAGTCAGCAAATCCCATGAACAGCTCCCTGCTCTCTTTGTATCGGAGAGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS GCA 90 bp TCTGCTAGAGCAACAATGAAATCGTTCAATTCAATGCACAGTCCTTaGATCTGTTCCTCTGAGAGGGGATCTTGGTCTCTTAGCAACCCC +
Preference number: 5 (lower is better)
Translates to: SARATMKSFNSMHSP*ICSSERGSWSLSNP
Trigger: GGGGTTGCTAAGAGACCAAGATCCCCTCTCAGAGGAACAGATGCAAGGACTGTGCATTGAATTGAACGATTTCATTGTTGCTCTAGCAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS GCA 90 bp CTTGAAAGCGTCTTCAAAGTGCTTATGACTGACCTTAAGCTCACCTaGTCCAACACCATTCTTCTGAGCTGTTATTTCTTGTCTCAGGGC +
Preference number: 5 (lower is better)
Translates to: LESVFKVLMTDLKLT*SNTILLSCYFLSQG
Trigger: GCCCTGAGACAAGAAATAACAGCTCAGAAGAATGGTGTTGGAGCAGGTGAGCTTAAGGTCAGTCATAAGCACTTTGAAGACGCTTTCAAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS CCA 90 bp GTCACATTAGGGACAGTTACAAAGCCTTCCCTTTTGGCAGAAGGCTaGACTTCTGCTAGAGCAACAATGAAATCGTTCAATTCAATGCAC +
Preference number: 5 (lower is better)
Translates to: VTLGTVTKPSLLAEG*TSARATMKSFNSMH
Trigger: GTGCATTGAATTGAACGATTTCATTGTTGCTCTAGCAGAAGTCCAGCCTTCTGCCAAAAGGGAAGGCTTTGTAACTGTCCCTAATGTGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS CCA 90 bp GCTGTAGCTGCCACGTTATTCAGATCATCCATGCAGGTTAGAAGCTaGGCTACAATTCTTCGTTCCATATCTTTTGAAGCAACTTCTCTT +
Preference number: 5 (lower is better)
Translates to: AVAATLFRSSMQVRS*ATILRSISFEATSL
Trigger: AAGAGAAGTTGCTTCAAAAGATATGGAACGAAGAATTGTAGCCCAGCTTCTAACCTGCATGGATGATCTGAATAACGTGGCAGCTACAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CAA 90 bp AGGCATTACCACCTGAGAGGATGCAGAGAACAGCTTTACGACTATATCTTTAAATTTCCACCGGGAGTTTaGTCAATAAACCATCCTCCC +
Preference number: 5 (lower is better)
Translates to: RHYHLRGCREQLYDYIFKFPPGV*SINHPP
Trigger: GGGAGGATGGTTTATTGACAAAACTCCCGGTGGAAA...TTTAAAGATATAGTCGTAAAGCTGTTCTCTGCATCCTCTCAGGTGGTAATGCCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CAA 90 bp GACTTTTCTGGCATGGCAGTTTTGTTTGTACTGGACCTGTATATTTGTAAAGCTCCTCTTCATCTTGTCTaGCTCTTTTTGCCAGATGTC +
Preference number: 5 (lower is better)
Translates to: DFSGMAVLFVLDLYICKAPLHLV*LFLPDV
Trigger: GACATCTGGCAAAAAGAGCAAGACAAGATGAAGAGG...AGCTTTACAAATATACAGGTCCAGTACAAACAAAACTGCCATGCCAGAAAAGTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CAA 90 bp GACTTTTCTGGCATGGCAGTTTTGTTTGTACTGGACCTGTATATTTGTAAAGCTCTCATCCTCTTCATCTaGTCTTGCTCTTTTTGCCAG +
Preference number: 5 (lower is better)
Translates to: DFSGMAVLFVLDLYICKALILFI*SCSFCQ
Trigger: CTGGCAAAAAGAGCAAGACAAGATGAAGAGGATGAG...AGCTTTACAAATATACAGGTCCAGTACAAACAAAACTGCCATGCCAGAAAAGTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CAA 90 bp GACTTTTCTGGCATGGCAGTTTTGTTTGTACTGGACCTGTATATTTGTAAAGCTTTTTCGGCACAACGTTaGGAGAATTCTTTCTCTGGC +
Preference number: 5 (lower is better)
Translates to: DFSGMAVLFVLDLYICKAFSAQR*ENSFSG
Trigger: GCCAGAGAAAGAATTCTCCAAACGTTGTGCCGAAAA...AGCTTTACAAATATACAGGTCCAGTACAAACAAAACTGCCATGCCAGAAAAGTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS-3UTR CAA 90 bp ATTTCTGGTGGCCTGGACATAAAATACAAGCTGTGTCTGCTGTGGTACAAGTTGATGATATCTGGTCTATaGGTGGCAGCCAAAATAAAA +
Preference number: 5 (lower is better)
Translates to: ISGGLDIKYKLCLLWYKLMISGL*VAAKIK
Trigger: TTTTATTTTGGCTGCCACCAATAGACCAGATATCAT...CAACTTGTACCACAGCAGACACAGCTTGTATTTTATGTCCAGGCCACCAGAAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS TCA 90 bp ACTGAGGGACCTCTGCAGAGCTTCATACATCACTTGATCCTTTATTaGTATGGATGGTTTTACTTTCTTGAAAGCGTCTTCAAAGTGCTT +
Preference number: 5 (lower is better)
Translates to: TEGPLQSFIHHLILY*YGWFYFLESVFKVL
Trigger: AAGCACTTTGAAGACGCTTTCAAGAAAGTAAAACCATCCATATCAATAAAGGATCAAGTGATGTATGAAGCTCTGCAGAGGTCCCTCAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS CAA 72 bp CGGTCTGCTGGGGGAGGCAAACCCACAAAGAGCGTTTaGTCCAGGCGGCCTGGGCGCAGAATGGCAGGGTCA +
Preference number: 6 (lower is better)
Translates to: RSAGGGKPTKSV*SRRPGRRMAGS
Trigger: TGACCCTGCCATTCTGCGCCCAGGCCGCCTGGACAAAACGCTCTTTGTGGGTTTGCCTCCCCCAGCAGACCG
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS CAA 90 bp ATGGCAACACGGTCTGCTGGGGGAGGCAAACCCACAAAGAGCGTTTaGTCCAGGCGGCCTGGGCGCAGAATGGCAGGGTCAATGATATCT +
Preference number: 6 (lower is better)
Translates to: MATRSAGGGKPTKSV*SRRPGRRMAGSMIS
Trigger: AGATATCATTGACCCTGCCATTCTGCGCCCAGGCCGCCTGGACAAAACGCTCTTTGTGGGTTTGCCTCCCCCAGCAGACCGTGTTGCCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS GCA 72 bp TGCAGGAGAACTCCACGAGGGGGCACGACACCAAGGTaGTGGTATACCTCTGGATGGCGCATGTGTATGAGC +
Preference number: 6 (lower is better)
Translates to: CRRTPRGGTTPR*WYTSGWRMCMS
Trigger: GCTCATACACATGCGCCATCCAGAGGTATACCAGCACCTTGGTGTCGTGCCCCCTCGTGGAGTTCTCCTGCA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS CCA 72 bp CTTCAATGGCACGGAGCCCGTTTTAGACGTCAGCAATaGCGTGGAAGTGGTGGCTTCTCTCTGTCCCCACTT +
Preference number: 6 (lower is better)
Translates to: LQWHGARFRRQQ*RGSGGFSLSPL
Trigger: AAGTGGGGACAGAGAGAAGCCACCACTTCCACGCCATTGCTGACGTCTAAAACGGGCTCCGTGCCATTGAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS CCA 72 bp AGGAGAACTCCACGAGGGGGCACGACACCAAGGTGCTaGTATACCTCTGGATGGCGCATGTGTATGAGCATT +
Preference number: 6 (lower is better)
Translates to: RRTPRGGTTPRC*YTSGWRMCMSI
Trigger: AATGCTCATACACATGCGCCATCCAGAGGTATACCAGCACCTTGGTGTCGTGCCCCCTCGTGGAGTTCTCCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS TCA 72 bp GGAGGATGCCAGCTGGAGTCCCCAAACCAAGAGTTCTaGACTGGTCTGGGTTGCGAACAGGTGCCAATATTG +
Preference number: 6 (lower is better)
Translates to: GGCQLESPNQEF*TGLGCEQVPIL
Trigger: CAATATTGGCACCTGTTCGCAACCCAGACCAGTTCAGAACTCTTGGTTTGGGGACTCCAGCTGGCATCCTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS TCA 72 bp TCAGGGCACAGAGAGAAGCTTCCCGTACCAGAGCAGTaGGGTCCGCACCCGTATAGCAATTACAACGAAGGT +
Preference number: 6 (lower is better)
Translates to: SGHREKLPVPEQ*GPHPYSNYNEG
Trigger: ACCTTCGTTGTAATTGCTATACGGGTGCGGACCTCACTGCTCTGGTACGGGAAGCTTCTCTCTGTGCCCTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS CCA 72 bp ACGAGGGGGCACGACACCAAGGTGCTGGTATACCTCTaGATGGCGCATGTGTATGAGCATTTTGCAGACTTC +
Preference number: 6 (lower is better)
Translates to: TRGHDTKVLVYL*MAHVYEHFADF
Trigger: GAAGTCTGCAAAATGCTCATACACATGCGCCATCCAGAGGTATACCAGCACCTTGGTGTCGTGCCCCCTCGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS CCA 72 bp TGGAAGTGGTGGCTTCTCTCTGTCCCCACTTCGGAGTaGTTGAAACAGACTCTGAGTTTCCTCTCCGATACA +
Preference number: 6 (lower is better)
Translates to: WKWWLLSVPTSE*LKQTLSFLSDT
Trigger: TGTATCGGAGAGGAAACTCAGAGTCTGTTTCAACCACTCCGAAGTGGGGACAGAGAGAAGCCACCACTTCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS CCA 72 bp CTGCTCAGACTCTCCAGAAACTCCGGACACAATCTCTaGAGCAGCCACTTTCAGAATCGGCAAGTCAAGTTC +
Preference number: 6 (lower is better)
Translates to: LLRLSRNSGHNL*SSHFQNRQVKF
Trigger: GAACTTGACTTGCCGATTCTGAAAGTGGCTGCTCCAGAGATTGTGTCCGGAGTTTCTGGAGAGTCTGAGCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS CCA 72 bp ATGCCAGCTGGAGTCCCCAAACCAAGAGTTCTGAACTaGTCTGGGTTGCGAACAGGTGCCAATATTGCCATT +
Preference number: 6 (lower is better)
Translates to: MPAGVPKPRVLN*SGLRTGANIAI
Trigger: AATGGCAATATTGGCACCTGTTCGCAACCCAGACCAGTTCAGAACTCTTGGTTTGGGGACTCCAGCTGGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS CAA 90 bp CTTAAGCTCACCTGCTCCAACACCATTCTTCTGAGCTGTTATTTCTaGTCTCAGGGCACAGAGAGAAGCTTCCCGTACCAGAGCAGTGAG +
Preference number: 6 (lower is better)
Translates to: LKLTCSNTILLSCYF*SQGTERSFPYQSSE
Trigger: CTCACTGCTCTGGTACGGGAAGCTTCTCTCTGTGCCCTGAGACAAGAAATAACAGCTCAGAAGAATGGTGTTGGAGCAGGTGAGCTTAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS TCA 72 bp TGGCGTGTTTCTAAGCCATCCATCTCTGTAAGCAGCTaGTTCACCACACGAACACTAGCACCTGTTTCTCGG +
Preference number: 6 (lower is better)
Translates to: WRVSKPSISVSS*FTTRTLAPVSR
Trigger: CCGAGAAACAGGTGCTAGTGTTCGTGTGGTGAATCAGCTGCTTACAGAGATGGATGGCTTAGAAACACGCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS CCA 72 bp CAACGTTTGGAGAATTCTTTCTCTGGCTGCCTCATCTaGGATACCCAAGCAGACTTCTCGGTCAAACCTTCC +
Preference number: 6 (lower is better)
Translates to: QRLENSFSGCLI*DTQADFSVKPS
Trigger: GGAAGGTTTGACCGAGAAGTCTGCTTGGGTATCCCAGATGAGGCAGCCAGAGAAAGAATTCTCCAAACGTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS CCA 72 bp TTCCTCTCCGATACAAAGAGAGCAGGGAGCTGTTCATaGGATTTGCTGACTGTGGATCTGGGTAATCTTCCA +
Preference number: 6 (lower is better)
Translates to: FLSDTKRAGSCS*DLLTVDLGNLP
Trigger: TGGAAGATTACCCAGATCCACAGTCAGCAAATCCCATGAACAGCTCCCTGCTCTCTTTGTATCGGAGAGGAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS CCA 72 bp AGCTGGAGTCCCCAAACCAAGAGTTCTGAACTGGTCTaGGTTGCGAACAGGTGCCAATATTGCCATTATAAG +
Preference number: 6 (lower is better)
Translates to: SWSPQTKSSELV*VANRCQYCHYK
Trigger: CTTATAATGGCAATATTGGCACCTGTTCGCAACCCAGACCAGTTCAGAACTCTTGGTTTGGGGACTCCAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS CAA 72 bp TCCGATACAAAGAGAGCAGGGAGCTGTTCATGGGATTaGCTGACTGTGGATCTGGGTAATCTTCCATGTTCG +
Preference number: 6 (lower is better)
Translates to: SDTKRAGSCSWD*LTVDLGNLPCS
Trigger: CGAACATGGAAGATTACCCAGATCCACAGTCAGCAAATCCCATGAACAGCTCCCTGCTCTCTTTGTATCGGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS CAA 72 bp GGAGTCCCCAAACCAAGAGTTCTGAACTGGTCTGGGTaGCGAACAGGTGCCAATATTGCCATTATAAGCTCA +
Preference number: 6 (lower is better)
Translates to: GVPKPRVLNWSG*RTGANIAIISS
Trigger: TGAGCTTATAATGGCAATATTGGCACCTGTTCGCAACCCAGACCAGTTCAGAACTCTTGGTTTGGGGACTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS TCA 72 bp CTGACCTTAAGCTCACCTGCTCCAACACCATTCTTCTaGGCTGTTATTTCTTGTCTCAGGGCACAGAGAGAA +
Preference number: 6 (lower is better)
Translates to: LTLSSPAPTPFF*AVISCLRAQRE
Trigger: TTCTCTCTGTGCCCTGAGACAAGAAATAACAGCTCAGAAGAATGGTGTTGGAGCAGGTGAGCTTAAGGTCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS GCA 72 bp TCAGAGGGCAAACCTTCAATCTCAGGCTTTTTCTTCTaGTGCGCCTGTTGTTTCATCAAGACCCTATTGACC +
Preference number: 6 (lower is better)
Translates to: SEGKPSISGFFF*CACCFIKTLLT
Trigger: GGTCAATAGGGTCTTGATGAAACAACAGGCGCAGCAGAAGAAAAAGCCTGAGATTGAAGGTTTGCCCTCTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS CAA 72 bp TCCAAGGGAAGACTTTCTTTCTTTCCACCGGGAGTTTaGTCAATAAACCATCCTCCCTCAGATTCTCGGGCA +
Preference number: 6 (lower is better)
Translates to: SKGRLSFFPPGV*SINHPPSDSRA
Trigger: TGCCCGAGAATCTGAGGGAGGATGGTTTATTGACAAAACTCCCGGTGGAAAGAAAGAAAGTCTTCCCTTGGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS CAA 90 bp AGTTTCCTCTCCGATACAAAGAGAGCAGGGAGCTGTTCATGGGATTaGCTGACTGTGGATCTGGGTAATCTTCCATGTTCGAATCATCAT +
Preference number: 6 (lower is better)
Translates to: SFLSDTKRAGSCSWD*LTVDLGNLPCSNHH
Trigger: ATGATGATTCGAACATGGAAGATTACCCAGATCCACAGTCAGCAAATCCCATGAACAGCTCCCTGCTCTCTTTGTATCGGAGAGGAAACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS TCA 72 bp ATACAAAGAGAGCAGGGAGCTGTTCATGGGATTTGCTaGCTGTGGATCTGGGTAATCTTCCATGTTCGAATC +
Preference number: 6 (lower is better)
Translates to: IQREQGAVHGIC*LWIWVIFHVRI
Trigger: GATTCGAACATGGAAGATTACCCAGATCCACAGTCAGCAAATCCCATGAACAGCTCCCTGCTCTCTTTGTAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS CCA 72 bp GGGACAGTTACAAAGCCTTCCCTTTTGGCAGAAGGCTaGACTTCTGCTAGAGCAACAATGAAATCGTTCAAT +
Preference number: 6 (lower is better)
Translates to: GTVTKPSLLAEG*TSARATMKSFN
Trigger: ATTGAACGATTTCATTGTTGCTCTAGCAGAAGTCCAGCCTTCTGCCAAAAGGGAAGGCTTTGTAACTGTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS CCA 72 bp TCTGGTCTATTGGTGGCAGCCAAAATAAAAACTTGCTaGCGTGTTTCTAAGCCATCCATCTCTGTAAGCAGC +
Preference number: 6 (lower is better)
Translates to: SGLLVAAKIKTC*RVSKPSISVSS
Trigger: GCTGCTTACAGAGATGGATGGCTTAGAAACACGCCAGCAAGTTTTTATTTTGGCTGCCACCAATAGACCAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS GCA 72 bp GCAACAATGAAATCGTTCAATTCAATGCACAGTCCTTaGATCTGTTCCTCTGAGAGGGGATCTTGGTCTCTT +
Preference number: 6 (lower is better)
Translates to: ATMKSFNSMHSP*ICSSERGSWSL
Trigger: AAGAGACCAAGATCCCCTCTCAGAGGAACAGATGCAAGGACTGTGCATTGAATTGAACGATTTCATTGTTGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS GCA 72 bp ATATCTGGTCTATTGGTGGCAGCCAAAATAAAAACTTaGTGGCGTGTTTCTAAGCCATCCATCTCTGTAAGC +
Preference number: 6 (lower is better)
Translates to: ISGLLVAAKIKT*WRVSKPSISVS
Trigger: GCTTACAGAGATGGATGGCTTAGAAACACGCCAGCAAGTTTTTATTTTGGCTGCCACCAATAGACCAGATAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS GCA 72 bp GTCTTCAAAGTGCTTATGACTGACCTTAAGCTCACCTaGTCCAACACCATTCTTCTGAGCTGTTATTTCTTG +
Preference number: 6 (lower is better)
Translates to: VFKVLMTDLKLT*SNTILLSCYFL
Trigger: CAAGAAATAACAGCTCAGAAGAATGGTGTTGGAGCAGGTGAGCTTAAGGTCAGTCATAAGCACTTTGAAGAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS CCA 72 bp GCCACGTTATTCAGATCATCCATGCAGGTTAGAAGCTaGGCTACAATTCTTCGTTCCATATCTTTTGAAGCA +
Preference number: 6 (lower is better)
Translates to: ATLFRSSMQVRS*ATILRSISFEA
Trigger: TGCTTCAAAAGATATGGAACGAAGAATTGTAGCCCAGCTTCTAACCTGCATGGATGATCTGAATAACGTGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS CAA 72 bp TGGTATACCTCTGGATGGCGCATGTGTATGAGCATTTaGCAGACTTCTTTTAATGTTGCATCATTGCCTCCA +
Preference number: 6 (lower is better)
Translates to: WYTSGWRMCMSI*QTSFNVASLPP
Trigger: TGGAGGCAATGATGCAACATTAAAAGAAGTCTGCAAAATGCTCATACACATGCGCCATCCAGAGGTATACCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS CAA 90 bp TCTTTTAATGTTGCATCATTGCCTCCAACATCTTCAAACTTCACATaGGAAATCTGCAACTCTGTACTCCTTGCTTTGGCTTTCTTTTGC +
Preference number: 6 (lower is better)
Translates to: SFNVASLPPTSSNFT*EICNSVLLALAFFC
Trigger: GCAAAAGAAAGCCAAAGCAAGGAGTACAGAGTTGCAGATTTCCAATGTGAAGTTTGAAGATGTTGGAGGCAATGATGCAACATTAAAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9
CDS CAA 72 bp CAAACTTCACATTGGAAATCTGCAACTCTGTACTCCTaGCTTTGGCTTTCTTTTGCAGAAGAGCTTCTATTT +
Preference number: 6 (lower is better)
Translates to: QTSHWKSATLYS*LWLSFAEELLF
Trigger: AAATAGAAGCTCTTCTGCAAAAGAAAGCCAAAGCAAGGAGTACAGAGTTGCAGATTTCCAATGTGAAGTTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000027797.9