Pregenerated sensors for NUS1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000023068Ensembl transcript IDs: ENSMUST00000023830.16
Found 59 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCTCTATCTGGAATCTCAGTTCCTAAGACACACACTGCTGTTACTTaGTTGAACTCCAGTCTATATACTCCATTCTCCAATGTGCCCCCA | + |
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Preference number: 1 (lower is better) Translates to: SLSGISVPKTHTAVT*LNSSLYTPFSNVPP Trigger: TGGGGGCACATTGGAGAATGGAGTATATAGACTGGAGTTCAAGCAAGTAACAGCAGTGTGTGTCTTAGGAACTGAGATTCCAGATAGAGA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR CCA 90 bp | GGCAGATTTTATTACTTTACAGATAATCTTGGGCACTGCTATCAGTaGCCCTGGGTTTTCGTTCAAACCATCCTACAGTCACTCTTGGGA | + |
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Preference number: 1 (lower is better) Translates to: GRFYYFTDNLGHCYQ*PWVFVQTILQSLLG Trigger: TCCCAAGAGTGACTGTAGGATGGTTTGAACGAAAACCCAGGGCCACTGATAGCAGTGCCCAAGATTATCTGTAAAGTAATAAAATCTGCC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR GCA 90 bp | ATTCTCCTCGGCAGATTTTATTACTTTACAGATAATCTTGGGCACTaGTATCAGTGGCCCTGGGTTTTCGTTCAAACCATCCTACAGTCA | + |
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Preference number: 1 (lower is better) Translates to: ILLGRFYYFTDNLGH*YQWPWVFVQTILQS Trigger: TGACTGTAGGATGGTTTGAACGAAAACCCAGGGCCACTGATAGCAGTGCCCAAGATTATCTGTAAAGTAATAAAATCTGCCGAGGAGAAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR TCA 90 bp | TATCTGGAATCTCAGTTCCTAAGACACACACTGCTGTTACTTGCTTaGACTCCAGTCTATATACTCCATTCTCCAATGTGCCCCCATTTA | + |
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Preference number: 1 (lower is better) Translates to: YLESQFLRHTLLLLA*TPVYILHSPMCPHL Trigger: TAAATGGGGGCACATTGGAGAATGGAGTATATAGACTGGAGTTCAAGCAAGTAACAGCAGTGTGTGTCTTAGGAACTGAGATTCCAGATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR TCA 90 bp | AATGGGGTTTGTAATCCCAAGCTGAAACACATCTTCTTCAGAGTCTaGCAAGCAATTCCAAACCATACGTTCCAAACCCACTTTCTTTGC | + |
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Preference number: 1 (lower is better) Translates to: NGVCNPKLKHIFFRV*QAIPNHTFQTHFLC Trigger: GCAAAGAAAGTGGGTTTGGAACGTATGGTTTGGAATTGCTTGTCAGACTCTGAAGAAGATGTGTTTCAGCTTGGGATTACAAACCCCATT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR CCA 90 bp | AAGCAATTGTTCCTAAGGCCACAAACAGTCTTGGGTCATAGGCTATaGACTTGTTTTGTTGTATGGAAGGAAGGAAGAATAAAAACTCAA | + |
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Preference number: 1 (lower is better) Translates to: KQLFLRPQTVLGHRL*TCFVVWKEGRIKTQ Trigger: TTGAGTTTTTATTCTTCCTTCCTTCCATACAACAAAACAAGTCCATAGCCTATGACCCAAGACTGTTTGTGGCCTTAGGAACAATTGCTT 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR TCA 90 bp | ATTCCTATGTTCAGTAAAAAGTCAGCTTGTAATTACTGTGGAACCTaGGAATCCCAGAAAGACAAAGCTAAACCTCACTCTGGTATTAAA | + |
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Preference number: 1 (lower is better) Translates to: IPMFSKKSACNYCGT*ESQKDKAKPHSGIK Trigger: TTTAATACCAGAGTGAGGTTTAGCTTTGTCTTTCTGGGATTCTCAGGTTCCACAGTAATTACAAGCTGACTTTTTACTGAACATAGGAAT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR-3UTR TCA 90 bp | ACAACTCCGCCCCTCCCCCACCGCCAGAGGGAATCAAACCAGAGGAACACAGACGAAACAGGTTTTAAGTaGTTTGGGTACTATCCAGCA | + |
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Preference number: 2 (lower is better) Translates to: TTPPLPHRQRESNQRNTDETGFK*FGYYPA Trigger: TGCTGGATAGTACCCAAATCACTTAAAACCTGTTTC...GTCTGTGTTCCTCTGGTTTGATTCCCTCTGGCGGTGGGGGAGGGGCGGAGTTGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR-3UTR TCA 90 bp | ATCAAGAATTCACTTGTCAGAGCAGTGCTGTTCTCTAGAACACAGAAGACCAAGGGAGCAGGTTCCTTCTaGGGACAAGAGCTGCCTTGG | + |
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Preference number: 2 (lower is better) Translates to: IKNSLVRAVLFSRTQKTKGAGSF*GQELPW Trigger: CCAAGGCAGCTCTTGTCCTCAGAAGGAACCTGCTCC...CTTGGTCTTCTGTGTTCTAGAGAACAGCACTGCTCTGACAAGTGAATTCTTGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR-3UTR TCA 90 bp | GTCCCATGCCATCTGTTGAGTAGGTATGACTTGGTATCTTTGCCATTGTGGAGCGATTGCATTAGCAGTTaGCCTCATGTGAGAAGATCC | + |
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Preference number: 2 (lower is better) Translates to: VPCHLLSRYDLVSLPLWSDCISS*PHVRRS Trigger: GGATCTTCTCACATGAGGTCAACTGCTAATGCAATC...GCTCCACAATGGCAAAGATACCAAGTCATACCTACTCAACAGATGGCATGGGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR-3UTR CCA 90 bp | CATCACCAAAAATGTAACCTAGGGCCCTTCCTGTCTGTTCCCAGAATCCTTTGTGGCCACAAACAGTCTTaGGTCATAGGCTATGGACTT | + |
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Preference number: 2 (lower is better) Translates to: HHQKCNLGPFLSVPRILCGHKQS*VIGYGL Trigger: AAGTCCATAGCCTATGACCCAAGACTGTTTGTGGCC...ACAAAGGATTCTGGGAACAGACAGGAAGGGCCCTAGGTTACATTTTTGGTGATG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR-3UTR CCA 90 bp | GTCCCATGCCATCTGTTGAGTAGGTATGACTTGGTATCTTTGCCATTGTGGAGCATCACTGAGATTTACTaGGAGGAGAAAATCCCAGGT | + |
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Preference number: 2 (lower is better) Translates to: VPCHLLSRYDLVSLPLWSITEIY*EEKIPG Trigger: ACCTGGGATTTTCTCCTCCCAGTAAATCTCAGTGAT...GCTCCACAATGGCAAAGATACCAAGTCATACCTACTCAACAGATGGCATGGGAC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR-3UTR TCA 90 bp | GTTTTCAGACACACCAGAAGAGGGCACCAAATCCCATTACAGATGGCTATGAGCTTTGTAATCCCAAGCTaGAACACATCTTCTTCAGAG | + |
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Preference number: 2 (lower is better) Translates to: VFRHTRRGHQIPLQMAMSFVIPS*NTSSSE Trigger: CTCTGAAGAAGATGTGTTTCAGCTTGGGATTACAAA...GCTCATAGCCATCTGTAATGGGATTTGGTGCCCTCTTCTGGTGTGTCTGAAAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR-3UTR TCA 90 bp | AGCACTATGCACATAAAGCTGTCTTACAATGAGGTCTTCAGAAAGGGAACACTACATTACAGATGGCTATaGGCCACCATGTGGTTGCTG | + |
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Preference number: 2 (lower is better) Translates to: STMHIKLSYNEVFRKGTLHYRWL*ATMWLL Trigger: CAGCAACCACATGGTGGCTCATAGCCATCTGTAATG...TAGTGTTCCCTTTCTGAAGACCTCATTGTAAGACAGCTTTATGTGCATAGTGCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR-3UTR GCA 90 bp | GCTGTAGCTGTTTTCAGACACACCAGAAGAGGGCACCAAATCCCATTACAGATGCACACTGCTGTTACTTaGTTGAACTCCAGTCTATAT | + |
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Preference number: 2 (lower is better) Translates to: AVAVFRHTRRGHQIPLQMHTAVT*LNSSLY Trigger: ATATAGACTGGAGTTCAAGCAAGTAACAGCAGTGTG...CATCTGTAATGGGATTTGGTGCCCTCTTCTGGTGTGTCTGAAAACAGCTACAGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR-3UTR CCA 90 bp | GTTTTCAGACACACCAGAAGAGGGCACCAAATCCCATTACAGATGGCTATGAGCAACATCAGTGTCACTTaGGTCCTTTTTCTCCAAAAG | + |
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Preference number: 2 (lower is better) Translates to: VFRHTRRGHQIPLQMAMSNISVT*VLFLQK Trigger: CTTTTGGAGAAAAAGGACCCAAGTGACACTGATGTT...GCTCATAGCCATCTGTAATGGGATTTGGTGCCCTCTTCTGGTGTGTCTGAAAAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR CAA 90 bp | ATGCTTGACCTGCTTAAGCAATTGTTCCTAAGGCCACAAACAGTCTaGGGTCATAGGCTATGGACTTGTTTTGTTGTATGGAAGGAAGGA | + |
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Preference number: 2 (lower is better) Translates to: MLDLLKQLFLRPQTV*GHRLWTCFVVWKEG Trigger: TCCTTCCTTCCATACAACAAAACAAGTCCATAGCCTATGACCCAAGACTGTTTGTGGCCTTAGGAACAATTGCTTAAGCAGGTCAAGCAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR CAA 90 bp | TCATATGTCCCATGCCATCTGTTGAGTAGGTATGACTTGGTATCTTaGCCATTGTGGAGCGTGTCAAGGAGAAACAACTTAAAGGGATAC | + |
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Preference number: 2 (lower is better) Translates to: SYVPCHLLSRYDLVS*PLWSVSRRNNLKGY Trigger: GTATCCCTTTAAGTTGTTTCTCCTTGACACGCTCCACAATGGCAAAGATACCAAGTCATACCTACTCAACAGATGGCATGGGACATATGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR-3UTR TCA 90 bp | GTTTTCAGACACACCAGAAGAGGGCACCAAATCCCATTACAGATGGCTATGAGCACTCTAATGAAGAAATaGAATGGACGGAAATCTGAG | + |
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Preference number: 2 (lower is better) Translates to: VFRHTRRGHQIPLQMAMSTLMKK*NGRKSE Trigger: CTCAGATTTCCGTCCATTTCATTTCTTCATTAGAGT...GCTCATAGCCATCTGTAATGGGATTTGGTGCCCTCTTCTGGTGTGTCTGAAAAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR CAA 90 bp | TCCATTTCTTCATATGTCCCATGCCATCTGTTGAGTAGGTATGACTaGGTATCTTTGCCATTGTGGAGCGTGTCAAGGAGAAACAACTTA | + |
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Preference number: 2 (lower is better) Translates to: SISSYVPCHLLSRYD*VSLPLWSVSRRNNL Trigger: TAAGTTGTTTCTCCTTGACACGCTCCACAATGGCAAAGATACCAAGTCATACCTACTCAACAGATGGCATGGGACATATGAAGAAATGGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR-3UTR GCA 90 bp | TTATTTATATGGGTATGCTGTAGCTGTTTTCAGACACACCAGAAGAGGGCACCAATGACTTGGTATCTTTaGCATTGTGGAGCGTGTCAA | + |
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Preference number: 2 (lower is better) Translates to: LFIWVCCSCFQTHQKRAPMTWYL*HCGACQ Trigger: TTGACACGCTCCACAATGGCAAAGATACCAAGTCAT...TGGTGCCCTCTTCTGGTGTGTCTGAAAACAGCTACAGCATACCCATATAAATAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR-3UTR TCA 90 bp | TCATATGTCCCATGCCATCTGTTGAGTAGGTATGACTTGGTATCTTTGCCATTGGAATGTCACTCAAAATaGGAATACTTCCCCTTAGTA | + |
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Preference number: 2 (lower is better) Translates to: SYVPCHLLSRYDLVSLPLECHSK*EYFPLV Trigger: TACTAAGGGGAAGTATTCTCATTTTGAGTGACATTC...CAATGGCAAAGATACCAAGTCATACCTACTCAACAGATGGCATGGGACATATGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR-3UTR TCA 90 bp | AAAGCTGTGCATACCCCAGAAGATCTAAAAAGGACATTTATAACTATCGTGTTTCAAAGATTAGCAGTGTaGGAGAAAAGCATTAGCCAT | + |
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Preference number: 2 (lower is better) Translates to: KAVHTPEDLKRTFITIVFQRLAV*EKSISH Trigger: ATGGCTAATGCTTTTCTCTCACACTGCTAATCTTTG...AAACACGATAGTTATAAATGTCCTTTTTAGATCTTCTGGGGTATGCACAGCTTT 37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR-3UTR CAA 90 bp | TGTCTTAAATTACACACAACTCCGCCCCTCCCCCACCGCCAGAGGGAATCAAACCTGAGGACGTTCCCTTaGCTCGGCAGAGAAGCAAAC | + |
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Preference number: 3 (lower is better) Translates to: CLKLHTTPPLPHRQRESNLRTFP*LGREAN Trigger: GTTTGCTTCTCTGCCGAGCAAAGGGAACGTCCTCAG...GTTTGATTCCCTCTGGCGGTGGGGGAGGGGCGGAGTTGTGTGTAATTTAAGACA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR-3UTR CAA 90 bp | ACAACTCCGCCCCTCCCCCACCGCCAGAGGGAATCAAACCAGAGGAACACAGACAGAAGGAAATCAAAGTaGTCCTTTAAGAGGTTCCAT | + |
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Preference number: 3 (lower is better) Translates to: TTPPLPHRQRESNQRNTDRRKSK*SFKRFH Trigger: ATGGAACCTCTTAAAGGACAACTTTGATTTCCTTCT...GTCTGTGTTCCTCTGGTTTGATTCCCTCTGGCGGTGGGGGAGGGGCGGAGTTGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR-3UTR CAA 90 bp | TGTCTTAAATTACACACAACTCCGCCCCTCCCCCACCGCCAGAGGGAATCAAACAAACATCAGTGTCACTaGGGTCCTTTTTCTCCAAAA | + |
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Preference number: 3 (lower is better) Translates to: CLKLHTTPPLPHRQRESNKHQCH*GPFSPK Trigger: TTTTGGAGAAAAAGGACCCAAGTGACACTGATGTTT...GTTTGATTCCCTCTGGCGGTGGGGGAGGGGCGGAGTTGTGTGTAATTTAAGACA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR-3UTR CAA 90 bp | GTCCCATGCCATCTGTTGAGTAGGTATGACTTGGTATCTTTGCCATTGTGGAGCGACCTGCTTAAGCAATaGTTCCTAAGGCCACAAACA | + |
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Preference number: 3 (lower is better) Translates to: VPCHLLSRYDLVSLPLWSDLLKQ*FLRPQT Trigger: TGTTTGTGGCCTTAGGAACAATTGCTTAAGCAGGTC...GCTCCACAATGGCAAAGATACCAAGTCATACCTACTCAACAGATGGCATGGGAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR-3UTR CAA 90 bp | GTTTTCAGACACACCAGAAGAGGGCACCAAATCCCATTACAGATGGCTATGAGCTATGACTTGGTATCTTaGCCATTGTGGAGCGTGTCA | + |
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Preference number: 3 (lower is better) Translates to: VFRHTRRGHQIPLQMAMSYDLVS*PLWSVS Trigger: TGACACGCTCCACAATGGCAAAGATACCAAGTCATA...GCTCATAGCCATCTGTAATGGGATTTGGTGCCCTCTTCTGGTGTGTCTGAAAAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR CCA 72 bp | CTACTCAATCACCATGACATCATCACTGAGATTTACTaGGAGGAGAAAATCCCAGGTGCCACTCAAGAGGAG | + |
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Preference number: 3 (lower is better) Translates to: LLNHHDIITEIY*EEKIPGATQEE Trigger: CTCCTCTTGAGTGGCACCTGGGATTTTCTCCTCCCAGTAAATCTCAGTGATGATGTCATGGTGATTGAGTAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR-3UTR CAA 90 bp | GTCCCATGCCATCTGTTGAGTAGGTATGACTTGGTATCTTTGCCATTGTGGAGCCTCAACTCTAGGATTTaGGCTCAATTCCAAAGAGTA | + |
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Preference number: 3 (lower is better) Translates to: VPCHLLSRYDLVSLPLWSLNSRI*AQFQRV Trigger: TACTCTTTGGAATTGAGCCAAAATCCTAGAGTTGAG...GCTCCACAATGGCAAAGATACCAAGTCATACCTACTCAACAGATGGCATGGGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR TCA 72 bp | GTTTACTCTAATGAAGAAATGAAATGGACGGAAATCTaGGGACGTTCCCTTTGCTCGGCAGAGAAGCAAACG | + |
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Preference number: 3 (lower is better) Translates to: VYSNEEMKWTEI*GRSLCSAEKQT Trigger: CGTTTGCTTCTCTGCCGAGCAAAGGGAACGTCCTCAGATTTCCGTCCATTTCATTTCTTCATTAGAGTAAAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR TCA 72 bp | TGTAATCCCAAGCTGAAACACATCTTCTTCAGAGTCTaGCAAGCAATTCCAAACCATACGTTCCAAACCCAC | + |
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Preference number: 3 (lower is better) Translates to: CNPKLKHIFFRV*QAIPNHTFQTH Trigger: GTGGGTTTGGAACGTATGGTTTGGAATTGCTTGTCAGACTCTGAAGAAGATGTGTTTCAGCTTGGGATTACA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR TCA 72 bp | GATCTTGGCAAGAACTGGAGAACGATCAGTGCTTTTTaGAGTGTAGAGATTGCATTAGCAGTTGACCTCATG | + |
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Preference number: 3 (lower is better) Translates to: DLGKNWRTISAF*SVEIALAVDLM Trigger: CATGAGGTCAACTGCTAATGCAATCTCTACACTTCAAAAAGCACTGATCGTTCTCCAGTTCTTGCCAAGATC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR GCA 72 bp | GGCAGATTTTATTACTTTACAGATAATCTTGGGCACTaGTATCAGTGGCCCTGGGTTTTCGTTCAAACCATC | + |
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Preference number: 3 (lower is better) Translates to: GRFYYFTDNLGH*YQWPWVFVQTI Trigger: GATGGTTTGAACGAAAACCCAGGGCCACTGATAGCAGTGCCCAAGATTATCTGTAAAGTAATAAAATCTGCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR CCA 72 bp | TATTACTTTACAGATAATCTTGGGCACTGCTATCAGTaGCCCTGGGTTTTCGTTCAAACCATCCTACAGTCA | + |
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Preference number: 3 (lower is better) Translates to: YYFTDNLGHCYQ*PWVFVQTILQS Trigger: TGACTGTAGGATGGTTTGAACGAAAACCCAGGGCCACTGATAGCAGTGCCCAAGATTATCTGTAAAGTAATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR TCA 72 bp | ACAGATGAGCACTATGCACATAAAGCTGTCTTACAATaGGGTCTTCAGAAAGGGAACACTACACTGCATAAG | + |
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Preference number: 3 (lower is better) Translates to: TDEHYAHKAVLQ*GLQKGNTTLHK Trigger: CTTATGCAGTGTAGTGTTCCCTTTCTGAAGACCTCATTGTAAGACAGCTTTATGTGCATAGTGCTCATCTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR GCA 72 bp | GGAATCTCAGTTCCTAAGACACACACTGCTGTTACTTaGTTGAACTCCAGTCTATATACTCCATTCTCCAAT | + |
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Preference number: 3 (lower is better) Translates to: GISVPKTHTAVT*LNSSLYTPFSN Trigger: ATTGGAGAATGGAGTATATAGACTGGAGTTCAAGCAAGTAACAGCAGTGTGTGTCTTAGGAACTGAGATTCC 42% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR GCA 72 bp | AAACCATCCTACAGTCACTCTTGGGAGTCACAATACTaGACAAGAAAGTCACCTACAGTCACTTGTGTTAAA | + |
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Preference number: 3 (lower is better) Translates to: KPSYSHSWESQY*TRKSPTVTCVK Trigger: TTTAACACAAGTGACTGTAGGTGACTTTCTTGTGCAGTATTGTGACTCCCAAGAGTGACTGTAGGATGGTTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR-3UTR CAA 90 bp | TTATTTATATGGGTATGCTGTAGCTGTTTTCAGACACACCAGAAGAGGGCACCATTATCAAGAATTCACTaGTCAGAGCAGTGCTGTTCT | + |
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Preference number: 3 (lower is better) Translates to: LFIWVCCSCFQTHQKRAPLSRIH*SEQCCS Trigger: AGAACAGCACTGCTCTGACAAGTGAATTCTTGATAA...TGGTGCCCTCTTCTGGTGTGTCTGAAAACAGCTACAGCATACCCATATAAATAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR TCA 72 bp | AGCGTGTCAAGGAGAAACAACTTAAAGGGATACACATaGACACCAAGTTTTGGGAGCACAAAGATAGTTTTG | + |
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Preference number: 3 (lower is better) Translates to: SVSRRNNLKGYT*TPSFGSTKIVL Trigger: CAAAACTATCTTTGTGCTCCCAAAACTTGGTGTTCATGTGTATCCCTTTAAGTTGTTTCTCCTTGACACGCT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR-3UTR CAA 90 bp | AGCACTATGCACATAAAGCTGTCTTACAATGAGGTCTTCAGAAAGGGAACACTAAGCACAAAGATAGTTTaGATGATATCCAACTTGGGA | + |
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Preference number: 3 (lower is better) Translates to: STMHIKLSYNEVFRKGTLSTKIV*MISNLG Trigger: TCCCAAGTTGGATATCATCAAAACTATCTTTGTGCT...TAGTGTTCCCTTTCTGAAGACCTCATTGTAAGACAGCTTTATGTGCATAGTGCT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR GCA 72 bp | AACGAAGTTAATGTCTCCATTTCTTCATATGTCCCATaGCATCTGTTGAGTAGGTATGACTTGGTATCTTTG | + |
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Preference number: 3 (lower is better) Translates to: NEVNVSISSYVP*HLLSRYDLVSL Trigger: CAAAGATACCAAGTCATACCTACTCAACAGATGGCATGGGACATATGAAGAAATGGAGACATTAACTTCGTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR CCA 72 bp | AAAGGCATTTCCTATAAAGAGTTAAAATATGACCTTTaGTGTGCCCTAGCTACAGATGAGCACTATGCACAT | + |
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Preference number: 3 (lower is better) Translates to: KGISYKELKYDL*CALATDEHYAH Trigger: ATGTGCATAGTGCTCATCTGTAGCTAGGGCACACCAAAGGTCATATTTTAACTCTTTATAGGAAATGCCTTT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR GCA 72 bp | ATTAGCCATTTATCAAGAATTCACTTGTCAGAGCAGTaGTGTTCTCTAGAACACAGAAGACCAAGTTCAATT | + |
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Preference number: 3 (lower is better) Translates to: ISHLSRIHLSEQ*CSLEHRRPSSI Trigger: AATTGAACTTGGTCTTCTGTGTTCTAGAGAACAGCACTGCTCTGACAAGTGAATTCTTGATAAATGGCTAAT 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR TCA 72 bp | AACTCTAGGATTTTGGCTCAATTCCAAAGAGTAATTTaGCAAACTTCATTAGAACAAACCTTGAGTCCTCTT | + |
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Preference number: 3 (lower is better) Translates to: NSRILAQFQRVI*QTSLEQTLSPL Trigger: AAGAGGACTCAAGGTTTGTTCTAATGAAGTTTGTCAAATTACTCTTTGGAATTGAGCCAAAATCCTAGAGTT 35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| CDS-3UTR GCA 90 bp | GCTGTAGCTGTTTTCAGACACACCAGAAGAGGGCACCAAATCCCATTACAGATGGATGACGCCGGTTCCTaGCGACGGCCCGGGGCTTGC | + |
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Preference number: 4 (lower is better) Translates to: AVAVFRHTRRGHQIPLQMDDAGS*RRPGAC Trigger: GCAAGCCCCGGGCCGTCGGCAGGAACCGGCGTCATC...CATCTGTAATGGGATTTGGTGCCCTCTTCTGGTGTGTCTGAAAACAGCTACAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| CDS-3UTR GCA 90 bp | CACCGCCAGAGGGAATCAAACCAGAGGAACACAGACCATACACAGCACAGGGGAGTGGGCTTCCTCTGCTaGTGGGCTACTAACTGGCAA | + |
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Preference number: 4 (lower is better) Translates to: HRQRESNQRNTDHTQHRGVGFLC*WATNWQ Trigger: TTGCCAGTTAGTAGCCCAGCAGCAGAGGAAGCCCAC...TCCCCTGTGCTGTGTATGGTCTGTGTTCCTCTGGTTTGATTCCCTCTGGCGGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| CDS-3UTR CCA 90 bp | TGTCTTAAATTACACACAACTCCGCCCCTCCCCCACCGCCAGAGGGAATCAAACGGCTTCCTCTGCTGCTaGGCTACTAACTGGCAAAAA | + |
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Preference number: 4 (lower is better) Translates to: CLKLHTTPPLPHRQRESNGFLCC*ATNWQK Trigger: TTTTTGCCAGTTAGTAGCCCAGCAGCAGAGGAAGCC...GTTTGATTCCCTCTGGCGGTGGGGGAGGGGCGGAGTTGTGTGTAATTTAAGACA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| CDS-3UTR CCA 90 bp | TTATTTATATGGGTATGCTGTAGCTGTTTTCAGACACACCAGAAGAGGGCACCACGATGTCTGAGAAGCTaGGCTCCTGCACTTCCTCCG | + |
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Preference number: 4 (lower is better) Translates to: LFIWVCCSCFQTHQKRAPRCLRS*APALPP Trigger: CGGAGGAAGTGCAGGAGCCCAGCTTCTCAGACATCG...TGGTGCCCTCTTCTGGTGTGTCTGAAAACAGCTACAGCATACCCATATAAATAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| CDS-3UTR CCA 90 bp | GCCAGAGGGAATCAAACCAGAGGAACACAGACCATACACAGCACAGGGGAACAGTATTTGGAACAATCTTaGCCCAAAAGTTCCTGTTGC | + |
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Preference number: 4 (lower is better) Translates to: ARGNQTRGTQTIHSTGEQYLEQS*PKSSCC Trigger: GCAACAGGAACTTTTGGGCCAAGATTGTTCCAAATA...CTGTTCCCCTGTGCTGTGTATGGTCTGTGTTCCTCTGGTTTGATTCCCTCTGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| CDS-3UTR CCA 90 bp | GCCAGAGGGAATCAAACCAGAGGAACACAGACCATACACAGCACAGGGGAACAGACTCTGCTGAGTATTTaGAACAATCTTGGCCCAAAA | + |
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Preference number: 4 (lower is better) Translates to: ARGNQTRGTQTIHSTGEQTLLSI*NNLGPK Trigger: TTTTGGGCCAAGATTGTTCCAAATACTCAGCAGAGT...CTGTTCCCCTGTGCTGTGTATGGTCTGTGTTCCTCTGGTTTGATTCCCTCTGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR CAA 72 bp | CCCTGGGTTTTCGTTCAAACCATCCTACAGTCACTCTaGGGAGTCACAATACTGCACAAGAAAGTCACCTAC | + |
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Preference number: 4 (lower is better) Translates to: PWVFVQTILQSL*GVTILHKKVTY Trigger: GTAGGTGACTTTCTTGTGCAGTATTGTGACTCCCAAGAGTGACTGTAGGATGGTTTGAACGAAAACCCAGGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR CAA 72 bp | CCATGCCATCTGTTGAGTAGGTATGACTTGGTATCTTaGCCATTGTGGAGCGTGTCAAGGAGAAACAACTTA | + |
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Preference number: 4 (lower is better) Translates to: PCHLLSRYDLVS*PLWSVSRRNNL Trigger: TAAGTTGTTTCTCCTTGACACGCTCCACAATGGCAAAGATACCAAGTCATACCTACTCAACAGATGGCATGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR CAA 72 bp | CTGCTTAAGCAATTGTTCCTAAGGCCACAAACAGTCTaGGGTCATAGGCTATGGACTTGTTTTGTTGTATGG | + |
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Preference number: 4 (lower is better) Translates to: LLKQLFLRPQTV*GHRLWTCFVVW Trigger: CCATACAACAAAACAAGTCCATAGCCTATGACCCAAGACTGTTTGTGGCCTTAGGAACAATTGCTTAAGCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR CAA 72 bp | CATCTGTTGAGTAGGTATGACTTGGTATCTTTGCCATaGTGGAGCGTGTCAAGGAGAAACAACTTAAAGGGA | + |
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Preference number: 4 (lower is better) Translates to: HLLSRYDLVSLP*WSVSRRNNLKG Trigger: TCCCTTTAAGTTGTTTCTCCTTGACACGCTCCACAATGGCAAAGATACCAAGTCATACCTACTCAACAGATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR CAA 72 bp | AATGTCTCCATTTCTTCATATGTCCCATGCCATCTGTaGAGTAGGTATGACTTGGTATCTTTGCCATTGTGG | + |
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Preference number: 4 (lower is better) Translates to: NVSISSYVPCHL*SRYDLVSLPLW Trigger: CCACAATGGCAAAGATACCAAGTCATACCTACTCAACAGATGGCATGGGACATATGAAGAAATGGAGACATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR CAA 72 bp | ACATTGAAATTCAAAATGCTTGACCTGCTTAAGCAATaGTTCCTAAGGCCACAAACAGTCTTGGGTCATAGG | + |
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Preference number: 4 (lower is better) Translates to: TLKFKMLDLLKQ*FLRPQTVLGHR Trigger: CCTATGACCCAAGACTGTTTGTGGCCTTAGGAACAATTGCTTAAGCAGGTCAAGCATTTTGAATTTCAATGT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| 3UTR CAA 72 bp | TTAACCACTAAGCCATTTCTCCAGCCACCTACACATTaGTTTTTAACATTCCTATGTTCAGTAAAAAGTCAG | + |
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Preference number: 4 (lower is better) Translates to: LTTKPFLQPPTH*FLTFLCSVKSQ Trigger: CTGACTTTTTACTGAACATAGGAATGTTAAAAACAAATGTGTAGGTGGCTGGAGAAATGGCTTAGTGGTTAA 36% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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| CDS-3UTR CAA 90 bp | CATCACCAAAAATGTAACCTAGGGCCCTTCCTGTCTGTTCCCAGAATCCTTTGTAACTCTGCTGAGTATTaGGAACAATCTTGGCCCAAA | + |
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Preference number: 5 (lower is better) Translates to: HHQKCNLGPFLSVPRILCNSAEY*EQSWPK Trigger: TTTGGGCCAAGATTGTTCCAAATACTCAGCAGAGTT...ACAAAGGATTCTGGGAACAGACAGGAAGGGCCCTAGGTTACATTTTTGGTGATG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023830.16 |
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