Pregenerated sensors for NUPR1L (Mus musculus)
Ensembl gene IDs: ENSMUSG00000095789Ensembl transcript IDs: ENSMUST00000178355.3, ENSMUST00000194521.2, ENSMUST00000195766.6
Found 56 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTCTGTGTAGCCCTGGATGTTTTGGAGCCCTTCAGTAGACCAGGCTaGCCTCAAACTCAGAAATCTGCCTGCCCCTGCCTCCCAAGTGCT | + |
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Preference number: 1 (lower is better) Translates to: LCVALDVLEPFSRPG*PQTQKSACPCLPSA Trigger: AGCACTTGGGAGGCAGGGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTACTGAAGGGCTCCAAAACATCCAGGGCTACACAGAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| 3UTR TCA 90 bp | TCCAGCGGTCTCCTGAGCACAGAGGCTGGAGATGGATTACAGGTGTaGGCCACCCTGCCAAGATGGATTTCCTCGGACATTTCCCTATAT | + |
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Preference number: 1 (lower is better) Translates to: SSGLLSTEAGDGLQV*ATLPRWISSDISLY Trigger: ATATAGGGAAATGTCCGAGGAAATCCATCTTGGCAGGGTGGCTCACACCTGTAATCCATCTCCAGCCTCTGTGCTCAGGAGACCGCTGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| 3UTR CCA 90 bp | GACATTGTGGCTCATGTCTTAGCATCCCAGCCCATCCATGGAAGCTaGATGCAGGACAATCTGGAGTCCAAGGTAATCCTCTGCTACACA | + |
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Preference number: 1 (lower is better) Translates to: DIVAHVLASQPIHGS*MQDNLESKVILCYT Trigger: TGTGTAGCAGAGGATTACCTTGGACTCCAGATTGTCCTGCATCCAGCTTCCATGGATGGGCTGGGATGCTAAGACATGAGCCACAATGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| 3UTR GCA 90 bp | TATGGTGGCCAGACCTGTCATCTCAGGACTAGAGAAGCTGAGGCTTaGTACACACCATGGAATCCTGGGCTACGGGCATCATCAATAAAA | + |
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Preference number: 1 (lower is better) Translates to: YGGQTCHLRTREAEA*YTPWNPGLRASSIK Trigger: TTTTATTGATGATGCCCGTAGCCCAGGATTCCATGGTGTGTAGCAAGCCTCAGCTTCTCTAGTCCTGAGATGACAGGTCTGGCCACCATA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| 3UTR CCA 90 bp | AGAATTGGACATTGTGGCTCATGTCTTAGCATCCCAGCCCATCCATaGAAGCTGGATGCAGGACAATCTGGAGTCCAAGGTAATCCTCTG | + |
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Preference number: 1 (lower is better) Translates to: RIGHCGSCLSIPAHP*KLDAGQSGVQGNPL Trigger: CAGAGGATTACCTTGGACTCCAGATTGTCCTGCATCCAGCTTCCATGGATGGGCTGGGATGCTAAGACATGAGCCACAATGTCCAATTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| 3UTR CCA 90 bp | ATAGAGGTGGGCACTATCATGCCCAGTTTCTGTCTGCTGGCTTGCTaGGTTTTGGTTCTGTCAACTCGACATAAACTAGAGTCATCTGGA | + |
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Preference number: 1 (lower is better) Translates to: IEVGTIMPSFCLLAC*VLVLSTRHKLESSG Trigger: TCCAGATGACTCTAGTTTATGTCGAGTTGACAGAACCAAAACCCAGCAAGCCAGCAGACAGAAACTGGGCATGATAGTGCCCACCTCTAT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| 3UTR GCA 90 bp | TCGGACATTTCCCTATATTTCCAATGTAGACTTTTCTCACACAATTaGAAACTTCCAAACGGTGGAGACTTTCACCAGCAGCCGGGAAAC | + |
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Preference number: 1 (lower is better) Translates to: SDISLYFQCRLFSHN*KLPNGGDFHQQPGN Trigger: GTTTCCCGGCTGCTGGTGAAAGTCTCCACCGTTTGGAAGTTTGCAATTGTGTGAGAAAAGTCTACATTGGAAATATAGGGAAATGTCCGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| 3UTR GCA 90 bp | AGGGCTGTAAGCTTTAAGGTGAAACAACCCCTTTCCTGCCCAAGTTaGAAGCAAAAGTTCACGGTGTTTATTACAGCAATTGGAAGCAAA | + |
|
Preference number: 1 (lower is better) Translates to: RAVSFKVKQPLSCPS*KQKFTVFITAIGSK Trigger: TTTGCTTCCAATTGCTGTAATAAACACCGTGAACTTTTGCTTGCAACTTGGGCAGGAAAGGGGTTGTTTCACCTTAAAGCTTACAGCCCT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| 3UTR GCA 90 bp | ACTTCAGGAAGGGCTGTAAGCTTTAAGGTGAAACAACCCCTTTCCTaGCCAAGTTGCAAGCAAAAGTTCACGGTGTTTATTACAGCAATT | + |
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Preference number: 1 (lower is better) Translates to: TSGRAVSFKVKQPLS*PSCKQKFTVFITAI Trigger: AATTGCTGTAATAAACACCGTGAACTTTTGCTTGCAACTTGGGCAGGAAAGGGGTTGTTTCACCTTAAAGCTTACAGCCCTTCCTGAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| 3UTR TCA 90 bp | CACCGTGTTTGTTCTAGTTTCCTTTCTGTTGTGAAAATAATCTCCTaGGCTTGTGATCGCCTCTTTATATGTCAGAGCCCAGAGAGTTGT | + |
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Preference number: 1 (lower is better) Translates to: HRVCSSFLSVVKIIS*ACDRLFICQSPESC Trigger: ACAACTCTCTGGGCTCTGACATATAAAGAGGCGATCACAAGCTCAGGAGATTATTTTCACAACAGAAAGGAAACTAGAACAAACACGGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194521.2 |
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| 3UTR-3UTR CCA 90 bp | GTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCCCTGCCTCCCAAGTGCACAGCAGGGAATCATaGCCCATGCTTGAAACTTTA | + |
|
Preference number: 2 (lower is better) Translates to: VDQAGLKLRNLPAPASQVHSRES*PMLETL Trigger: TAAAGTTTCAAGCATGGGCCATGATTCCCTGCTGTG...CACTTGGGAGGCAGGGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| 3UTR-3UTR CCA 90 bp | GGTGATGAGTTCGAGGTCAGTTTAGGAGACAGTGTCAGAAATGAGAAGAAAAGGCCTACCCAACACCAATaGGCTCCGCCTGCCCATACC | + |
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Preference number: 2 (lower is better) Translates to: GDEFEVSLGDSVRNEKKRPTQHQ*APPAHT Trigger: GGTATGGGCAGGCGGAGCCCATTGGTGTTGGGTAGG...CCTTTTCTTCTCATTTCTGACACTGTCTCCTAAACTGACCTCGAACTCATCACC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| 3UTR-3UTR CCA 90 bp | GTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCCCTGCCTCCCAAGTGGTTTATTACAGCAATTaGAAGCAAACAAGGAGGAGG | + |
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Preference number: 2 (lower is better) Translates to: VDQAGLKLRNLPAPASQVVYYSN*KQTRRR Trigger: CCTCCTCCTTGTTTGCTTCCAATTGCTGTAATAAAC...CACTTGGGAGGCAGGGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| 3UTR-3UTR CCA 90 bp | CTTCTGACCCACTCTTTCACTTTGCTAGTTCAAAGAGGCATAGAGGTGGGCACTCACAGAGGCTGGAGATaGATTACAGGTGTGAGCCAC | + |
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Preference number: 2 (lower is better) Translates to: LLTHSFTLLVQRGIEVGTHRGWR*ITGVSH Trigger: GTGGCTCACACCTGTAATCCATCTCCAGCCTCTGTG...AGTGCCCACCTCTATGCCTCTTTGAACTAGCAAAGTGAAAGAGTGGGTCAGAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| 3UTR-3UTR CCA 90 bp | CCAGGTCACTTGGTTTACTCCTGGGTGATCTCTGCGTGTTACTCACACCGTGTTCAGAGAGTTGTGAACTaGAGACCAGTTACCTCCACA | + |
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Preference number: 2 (lower is better) Translates to: PGHLVYSWVISACYSHRVQRVVN*RPVTST Trigger: TGTGGAGGTAACTGGTCTCCAGTTCACAACTCTCTG...AACACGGTGTGAGTAACACGCAGAGATCACCCAGGAGTAAACCAAGTGACCTGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194521.2 |
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| 3UTR-3UTR CCA 90 bp | CTTCTGACCCACTCTTTCACTTTGCTAGTTCAAAGAGGCATAGAGGTGGGCACTCACACCATGGAATCCTaGGCTACGGGCATCATCAAT | + |
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Preference number: 2 (lower is better) Translates to: LLTHSFTLLVQRGIEVGTHTMES*ATGIIN Trigger: ATTGATGATGCCCGTAGCCCAGGATTCCATGGTGTG...AGTGCCCACCTCTATGCCTCTTTGAACTAGCAAAGTGAAAGAGTGGGTCAGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| 3UTR CAA 90 bp | TATTACAGCAATTGGAAGCAAACAAGGAGGAGGGGCAGTTTTGTTTaGGGACAGTGCCTCAAAGAGTGTTCCTGGTTGGCCTCCAATTCC | + |
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Preference number: 2 (lower is better) Translates to: YYSNWKQTRRRGSFV*GQCLKECSWLASNS Trigger: GGAATTGGAGGCCAACCAGGAACACTCTTTGAGGCACTGTCCCAAAACAAAACTGCCCCTCCTCCTTGTTTGCTTCCAATTGCTGTAATA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| 3UTR-3UTR GCA 90 bp | AGGTGTGCGCCACCACCGCCCAGCAATCTTGAACTTTTAAATGTCTTGTTCATTAGAGAAGCTGAGGCTTaGTACACACCATGGAATCCT | + |
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Preference number: 2 (lower is better) Translates to: RCAPPPPSNLELLNVLFIREAEA*YTPWNP Trigger: AGGATTCCATGGTGTGTAGCAAGCCTCAGCTTCTCT...AATGAACAAGACATTTAAAAGTTCAAGATTGCTGGGCGGTGGTGGCGCACACCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| 3UTR-3UTR CCA 90 bp | TGCCCAAGTTGCAAGCAAAAGTTCACGGTGTTTATTACAGCAATTGGAAGCAAAGCTTGCTACACACCATaGAATCCTGGGCTACGGGCA | + |
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Preference number: 2 (lower is better) Translates to: CPSCKQKFTVFITAIGSKACYTP*NPGLRA Trigger: TGCCCGTAGCCCAGGATTCCATGGTGTGTAGCAAGC...TTTGCTTCCAATTGCTGTAATAAACACCGTGAACTTTTGCTTGCAACTTGGGCA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| 3UTR-3UTR CCA 90 bp | TGCCCAAGTTGCAAGCAAAAGTTCACGGTGTTTATTACAGCAATTGGAAGCAAACTCAAAGAGTGTTCCTaGTTGGCCTCCAATTCCAGC | + |
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Preference number: 2 (lower is better) Translates to: CPSCKQKFTVFITAIGSKLKECS*LASNSS Trigger: GCTGGAATTGGAGGCCAACCAGGAACACTCTTTGAG...TTTGCTTCCAATTGCTGTAATAAACACCGTGAACTTTTGCTTGCAACTTGGGCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| 3UTR-3UTR CAA 90 bp | GTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCCCTGCCTCCCAAGTGGGAGGAGGGGCAGTTTaGTTTTGGGACAGTGCCTCA | + |
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Preference number: 3 (lower is better) Translates to: VDQAGLKLRNLPAPASQVGGGAV*FWDSAS Trigger: TGAGGCACTGTCCCAAAACAAAACTGCCCCTCCTCC...CACTTGGGAGGCAGGGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| 3UTR CCA 72 bp | CCTGAGATATACATTCTACTCCCTACCCAACACCAATaGGCTCCGCCTGCCCATACCCGCTCAAGCGTGGCG | + |
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Preference number: 3 (lower is better) Translates to: PEIYILLPTQHQ*APPAHTRSSVA Trigger: CGCCACGCTTGAGCGGGTATGGGCAGGCGGAGCCCATTGGTGTTGGGTAGGGAGTAGAATGTATATCTCAGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| 3UTR CCA 72 bp | GCCCTGGATGTTTTGGAGCCCTTCAGTAGACCAGGCTaGCCTCAAACTCAGAAATCTGCCTGCCCCTGCCTC | + |
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Preference number: 3 (lower is better) Translates to: ALDVLEPFSRPG*PQTQKSACPCL Trigger: GAGGCAGGGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTACTGAAGGGCTCCAAAACATCCAGGGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| 3UTR GCA 72 bp | AGTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTaGCCCTGCCTCCCAAGTGCTGGGATTAAAGGTGTG | + |
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Preference number: 3 (lower is better) Translates to: SRPGWPQTQKSA*PCLPSAGIKGV Trigger: CACACCTTTAATCCCAGCACTTGGGAGGCAGGGGCAGGCAGATTTCTGAGTTTGAGGCCAGCCTGGTCTACT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| 3UTR GCA 72 bp | CAGACCTGTCATCTCAGGACTAGAGAAGCTGAGGCTTaGTACACACCATGGAATCCTGGGCTACGGGCATCA | + |
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Preference number: 3 (lower is better) Translates to: QTCHLRTREAEA*YTPWNPGLRAS Trigger: TGATGCCCGTAGCCCAGGATTCCATGGTGTGTAGCAAGCCTCAGCTTCTCTAGTCCTGAGATGACAGGTCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| 3UTR CCA 72 bp | CATTGTGGCTCATGTCTTAGCATCCCAGCCCATCCATaGAAGCTGGATGCAGGACAATCTGGAGTCCAAGGT | + |
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Preference number: 3 (lower is better) Translates to: HCGSCLSIPAHP*KLDAGQSGVQG Trigger: ACCTTGGACTCCAGATTGTCCTGCATCCAGCTTCCATGGATGGGCTGGGATGCTAAGACATGAGCCACAATG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| 3UTR CCA 72 bp | AGTTTTGTTTTGGGACAGTGCCTCAAAGAGTGTTCCTaGTTGGCCTCCAATTCCAGCGGTCTCCTGAGCACA | + |
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Preference number: 3 (lower is better) Translates to: SFVLGQCLKECS*LASNSSGLLST Trigger: TGTGCTCAGGAGACCGCTGGAATTGGAGGCCAACCAGGAACACTCTTTGAGGCACTGTCCCAAAACAAAACT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| 3UTR-3UTR CAA 90 bp | CACTTGGTTTACTCCTGGGTGATCTCTGCGTGTTACTCACACCGTGTTTGTTCTCCAGCACGGAGGATCTaGGTTACAGCTGGAAAAGAG | + |
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Preference number: 3 (lower is better) Translates to: HLVYSWVISACYSHRVCSPARRI*VTAGKE Trigger: CTCTTTTCCAGCTGTAACCAAGATCCTCCGTGCTGG...AGAACAAACACGGTGTGAGTAACACGCAGAGATCACCCAGGAGTAAACCAAGTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194521.2 |
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| 3UTR CCA 72 bp | GGCACTATCATGCCCAGTTTCTGTCTGCTGGCTTGCTaGGTTTTGGTTCTGTCAACTCGACATAAACTAGAG | + |
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Preference number: 3 (lower is better) Translates to: GTIMPSFCLLAC*VLVLSTRHKLE Trigger: CTCTAGTTTATGTCGAGTTGACAGAACCAAAACCCAGCAAGCCAGCAGACAGAAACTGGGCATGATAGTGCC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| 3UTR GCA 72 bp | AGGGCTGTAAGCTTTAAGGTGAAACAACCCCTTTCCTaGCCAAGTTGCAAGCAAAAGTTCACGGTGTTTATT | + |
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Preference number: 3 (lower is better) Translates to: RAVSFKVKQPLS*PSCKQKFTVFI Trigger: AATAAACACCGTGAACTTTTGCTTGCAACTTGGGCAGGAAAGGGGTTGTTTCACCTTAAAGCTTACAGCCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| 3UTR TCA 72 bp | TTCATTTTTATGTGTTTAAGTGCGCGTATGTCTGTGTaGTATACATGCAGCGTCCTCACAGGGCAGAATAGG | + |
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Preference number: 3 (lower is better) Translates to: FIFMCLSARMSV*YTCSVLTGQNR Trigger: CCTATTCTGCCCTGTGAGGACGCTGCATGTATATCACACAGACATACGCGCACTTAAACACATAAAAATGAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| 3UTR TCA 72 bp | TTTCCTTTCTGTTGTGAAAATAATCTCCTGAGCTTGTaGTCGCCTCTTTATATGTCAGAGCCCAGAGAGTTG | + |
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Preference number: 3 (lower is better) Translates to: FPFCCENNLLSL*SPLYMSEPREL Trigger: CAACTCTCTGGGCTCTGACATATAAAGAGGCGATCACAAGCTCAGGAGATTATTTTCACAACAGAAAGGAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194521.2 |
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| 3UTR GCA 72 bp | AGCTTTAAGGTGAAACAACCCCTTTCCTGCCCAAGTTaGAAGCAAAAGTTCACGGTGTTTATTACAGCAATT | + |
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Preference number: 3 (lower is better) Translates to: SFKVKQPLSCPS*KQKFTVFITAI Trigger: AATTGCTGTAATAAACACCGTGAACTTTTGCTTGCAACTTGGGCAGGAAAGGGGTTGTTTCACCTTAAAGCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| 3UTR TCA 72 bp | TGTTCTAGTTTCCTTTCTGTTGTGAAAATAATCTCCTaGGCTTGTGATCGCCTCTTTATATGTCAGAGCCCA | + |
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Preference number: 3 (lower is better) Translates to: CSSFLSVVKIIS*ACDRLFICQSP Trigger: TGGGCTCTGACATATAAAGAGGCGATCACAAGCTCAGGAGATTATTTTCACAACAGAAAGGAAACTAGAACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000194521.2 |
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| CDS-3UTR TCA 90 bp | GAGACTTTCACCAGCAGCCGGGAAACCCCTGGGTCGGGGATCGGGAGCCAGCACGCTTGCGCTGCCCGTTaGGCAGTATCTGCGCCACCT | + |
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Preference number: 4 (lower is better) Translates to: ETFTSSRETPGSGIGSQHACAAR*AVSAPP Trigger: AGGTGGCGCAGATACTGCTCAACGGGCAGCGCAAGC...GTGCTGGCTCCCGATCCCCGACCCAGGGGTTTCCCGGCTGCTGGTGAAAGTCTC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| CDS-3UTR GCA 90 bp | GCAGGACTCCAACTCAAGATCCTCCTGTCTCAGGTTCCCGCTCAAGCGTGGCGTGCGTCCGGCCCTTGCTaGGTCCAGCCCCAGAGGCCG | + |
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Preference number: 4 (lower is better) Translates to: AGLQLKILLSQVPAQAWRASGPC*VQPQRP Trigger: CGGCCTCTGGGGCTGGACGCAGCAAGGGCCGGACGC...ACGCCACGCTTGAGCGGGAACCTGAGACAGGAGGATCTTGAGTTGGAGTCCTGC 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000194521.2 ENSMUST00000195766.6 |
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| CDS-3UTR CCA 90 bp | GGACATTGTGGCTCATGTCTTAGCATCCCAGCCCATCCATGGAAGCTGGATGCAGGTTGCAGCTGGCGCTaGCGCCGCTTGCGCTGCCCG | + |
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Preference number: 4 (lower is better) Translates to: GHCGSCLSIPAHPWKLDAGCSWR*RRLRCP Trigger: CGGGCAGCGCAAGCGGCGCCAGCGCCAGCTGCAACC...TGCATCCAGCTTCCATGGATGGGCTGGGATGCTAAGACATGAGCCACAATGTCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| CDS-3UTR GCA 90 bp | AAAACCCTGTCAAAAAGTCCAGGTGACCAGCACGGAGGATCTTGGTTACAGCTGGCGTCCGGCCCTTGCTaGGTCCAGCCCCAGAGGCCG | + |
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Preference number: 4 (lower is better) Translates to: KTLSKSPGDQHGGSWLQLASGPC*VQPQRP Trigger: CGGCCTCTGGGGCTGGACGCAGCAAGGGCCGGACGC...CAGCTGTAACCAAGATCCTCCGTGCTGGTCACCTGGACTTTTTGACAGGGTTTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000194521.2 ENSMUST00000195766.6 |
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| CDS-3UTR CCA 90 bp | AGGACCAGGTCACTTGGTTTACTCCTGGGTGATCTCTGCGTGTTACTCACACCGGCGGGCTCGAGTCCTTaGGCCGGAGACAGAAGGACG | + |
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Preference number: 4 (lower is better) Translates to: RTRSLGLLLGDLCVLLTPAGSSP*AGDRRT Trigger: CGTCCTTCTGTCTCCGGCCCAAGGACTCGAGCCCGC...CGGTGTGAGTAACACGCAGAGATCACCCAGGAGTAAACCAAGTGACCTGGTCCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194521.2 |
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| CDS-3UTR CCA 90 bp | CACTTGGTTTACTCCTGGGTGATCTCTGCGTGTTACTCACACCGTGTTTGTTCTGGTTGCAGCTGGCGCTaGCGCCGCTTGCGCTGCCCG | + |
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Preference number: 4 (lower is better) Translates to: HLVYSWVISACYSHRVCSGCSWR*RRLRCP Trigger: CGGGCAGCGCAAGCGGCGCCAGCGCCAGCTGCAACC...AGAACAAACACGGTGTGAGTAACACGCAGAGATCACCCAGGAGTAAACCAAGTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000194521.2 |
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| CDS-3UTR GCA 90 bp | ATAGTCCTGGGAGGTACAAGAAAGGTAACTGAACATGAACCTCTGGGAACTGTGGCGTCCGGCCCTTGCTaGGTCCAGCCCCAGAGGCCG | + |
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Preference number: 4 (lower is better) Translates to: IVLGGTRKVTEHEPLGTVASGPC*VQPQRP Trigger: CGGCCTCTGGGGCTGGACGCAGCAAGGGCCGGACGC...CACAGTTCCCAGAGGTTCATGTTCAGTTACCTTTCTTGTACCTCCCAGGACTAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| CDS-3UTR GCA 90 bp | AGCTGGATGCAGGACAATCTGGAGTCCAAGGTAATCCTCTGCTACACACTGAGTGTATCTGCGCCACCTTaGGCTCGTGGCCGCCGGGCA | + |
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Preference number: 4 (lower is better) Translates to: SWMQDNLESKVILCYTLSVSAPP*ARGRRA Trigger: TGCCCGGCGGCCACGAGCGCAAGGTGGCGCAGATAC...ACTCAGTGTGTAGCAGAGGATTACCTTGGACTCCAGATTGTCCTGCATCCAGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| CDS-3UTR GCA 90 bp | AAAACCCTGTCAAAAAGTCCAGGTGACCAGCACGGAGGATCTTGGTTACAGCTGGTATCTGCGCCACCTTaGGCTCGTGGCCGCCGGGCA | + |
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Preference number: 4 (lower is better) Translates to: KTLSKSPGDQHGGSWLQLVSAPP*ARGRRA Trigger: TGCCCGGCGGCCACGAGCGCAAGGTGGCGCAGATAC...CAGCTGTAACCAAGATCCTCCGTGCTGGTCACCTGGACTTTTTGACAGGGTTTT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000194521.2 ENSMUST00000195766.6 |
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| CDS-3UTR TCA 90 bp | CTTAAAACCCTGTCAAAAAGTCCAGGTGACCAGCACGGAGGATCTTGGTTACAGGCTTGCGCTGCCCGTTaGGCAGTATCTGCGCCACCT | + |
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Preference number: 4 (lower is better) Translates to: LKTLSKSPGDQHGGSWLQACAAR*AVSAPP Trigger: AGGTGGCGCAGATACTGCTCAACGGGCAGCGCAAGC...CTGTAACCAAGATCCTCCGTGCTGGTCACCTGGACTTTTTGACAGGGTTTTAAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000194521.2 ENSMUST00000195766.6 |
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| CDS-3UTR CCA 90 bp | GCCACCCTGCCAAGATGGATTTCCTCGGACATTTCCCTATATTTCCAATGTAGAGCGGGCTCGAGTCCTTaGGCCGGAGACAGAAGGACG | + |
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Preference number: 4 (lower is better) Translates to: ATLPRWISSDISLYFQCRAGSSP*AGDRRT Trigger: CGTCCTTCTGTCTCCGGCCCAAGGACTCGAGCCCGC...TCTACATTGGAAATATAGGGAAATGTCCGAGGAAATCCATCTTGGCAGGGTGGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| 3UTR CAA 72 bp | TTTGTTTTGGGACAGTGCCTCAAAGAGTGTTCCTGGTaGGCCTCCAATTCCAGCGGTCTCCTGAGCACAGAG | + |
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Preference number: 4 (lower is better) Translates to: FVLGQCLKECSW*ASNSSGLLSTE Trigger: CTCTGTGCTCAGGAGACCGCTGGAATTGGAGGCCAACCAGGAACACTCTTTGAGGCACTGTCCCAAAACAAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| CDS-3UTR TCA 90 bp | GAGTTTTTAACAGGTCTTTCAGGTTTCAATAATGCCCAGGCAGGACTCCAACTCGCTTGCGCTGCCCGTTaGGCAGTATCTGCGCCACCT | + |
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Preference number: 4 (lower is better) Translates to: EFLTGLSGFNNAQAGLQLACAAR*AVSAPP Trigger: AGGTGGCGCAGATACTGCTCAACGGGCAGCGCAAGC...GAGTTGGAGTCCTGCCTGGGCATTATTGAAACCTGAAAGACCTGTTAAAAACTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000194521.2 ENSMUST00000195766.6 |
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| CDS-3UTR CCA 90 bp | GCTGGAAAAGAGTTTTTAACAGGTCTTTCAGGTTTCAATAATGCCCAGGCAGGAGCGGGCTCGAGTCCTTaGGCCGGAGACAGAAGGACG | + |
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Preference number: 4 (lower is better) Translates to: AGKEFLTGLSGFNNAQAGAGSSP*AGDRRT Trigger: CGTCCTTCTGTCTCCGGCCCAAGGACTCGAGCCCGC...TCCTGCCTGGGCATTATTGAAACCTGAAAGACCTGTTAAAAACTCTTTTCCAGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000194521.2 ENSMUST00000195766.6 |
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| 3UTR CAA 72 bp | GCCTCTGACCTTGAACTTCTGACCCACTCTTTCACTTaGCTAGTTCAAAGAGGCATAGAGGTGGGCACTATC | + |
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Preference number: 4 (lower is better) Translates to: ASDLELLTHSFT*LVQRGIEVGTI Trigger: GATAGTGCCCACCTCTATGCCTCTTTGAACTAGCAAAGTGAAAGAGTGGGTCAGAAGTTCAAGGTCAGAGGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| CDS-3UTR CAA 90 bp | GGACTCCAACTCAAGATCCTCCTGTCTCAGGTTCCCGCTCAAGCGTGGCGTGTGAGTATCTGCGCCACCTaGCGCTCGTGGCCGCCGGGC | + |
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Preference number: 5 (lower is better) Translates to: GLQLKILLSQVPAQAWRVSICAT*RSWPPG Trigger: GCCCGGCGGCCACGAGCGCAAGGTGGCGCAGATACT...CACACGCCACGCTTGAGCGGGAACCTGAGACAGGAGGATCTTGAGTTGGAGTCC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000194521.2 ENSMUST00000195766.6 |
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| CDS-3UTR CAA 90 bp | GAGATATACATTCTACTCCCTACCCAACACCAATGGGCTCCGCCTGCCCATACCAGTATCTGCGCCACCTaGCGCTCGTGGCCGCCGGGC | + |
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Preference number: 5 (lower is better) Translates to: EIYILLPTQHQWAPPAHTSICAT*RSWPPG Trigger: GCCCGGCGGCCACGAGCGCAAGGTGGCGCAGATACT...GGTATGGGCAGGCGGAGCCCATTGGTGTTGGGTAGGGAGTAGAATGTATATCTC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| CDS-3UTR CAA 90 bp | ACCCTGTCAAAAAGTCCAGGTGACCAGCACGGAGGATCTTGGTTACAGCTGGAATGGCGCTGGCGCCGCTaGCGCTGCCCGTTGAGCAGT | + |
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Preference number: 5 (lower is better) Translates to: TLSKSPGDQHGGSWLQLEWRWRR*RCPLSS Trigger: ACTGCTCAACGGGCAGCGCAAGCGGCGCCAGCGCCA...TTCCAGCTGTAACCAAGATCCTCCGTGCTGGTCACCTGGACTTTTTGACAGGGT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000194521.2 ENSMUST00000195766.6 |
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| CDS-3UTR CAA 90 bp | AAAACCCTGTCAAAAAGTCCAGGTGACCAGCACGGAGGATCTTGGTTACAGCTGAGTATCTGCGCCACCTaGCGCTCGTGGCCGCCGGGC | + |
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Preference number: 5 (lower is better) Translates to: KTLSKSPGDQHGGSWLQLSICAT*RSWPPG Trigger: GCCCGGCGGCCACGAGCGCAAGGTGGCGCAGATACT...CAGCTGTAACCAAGATCCTCCGTGCTGGTCACCTGGACTTTTTGACAGGGTTTT 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000194521.2 ENSMUST00000195766.6 |
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| CDS-3UTR CAA 90 bp | CCAGTTTCTGTCTGCTGGCTTGCTGGGTTTTGGTTCTGTCAACTCGACATAAACTGGCGCTGGCGCCGCTaGCGCTGCCCGTTGAGCAGT | + |
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Preference number: 5 (lower is better) Translates to: PVSVCWLAGFWFCQLDINWRWRR*RCPLSS Trigger: ACTGCTCAACGGGCAGCGCAAGCGGCGCCAGCGCCA...GTTTATGTCGAGTTGACAGAACCAAAACCCAGCAAGCCAGCAGACAGAAACTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000178355.3 |
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| CDS GCA 72 bp | CGCTGGCGCCGCTTGCGCTGCCCGTTGAGCAGTATCTaGGCCACCTTGCGCTCGTGGCCGCCGGGCACCGGG | + |
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Preference number: 6 (lower is better) Translates to: RWRRLRCPLSSI*ATLRSWPPGTG Trigger: CCCGGTGCCCGGCGGCCACGAGCGCAAGGTGGCGCAGATACTGCTCAACGGGCAGCGCAAGCGGCGCCAGCG 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000178355.3 ENSMUST00000194521.2 ENSMUST00000195766.6 |
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| CDS CCA 72 bp | CAGCGCCTCCGGCGGCGGCGGGCGGGCTCGAGTCCTTaGGCCGGAGACAGAAGGACGAGTTGGAGGGTCCAT | + |
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Preference number: 6 (lower is better) Translates to: QRLRRRRAGSSP*AGDRRTSWRVH Trigger: ATGGACCCTCCAACTCGTCCTTCTGTCTCCGGCCCAAGGACTCGAGCCCGCCCGCCGCCGCCGGAGGCGCTG 72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000178355.3 ENSMUST00000194521.2 ENSMUST00000195766.6 |
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