Pregenerated sensors for NUPR1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030717Ensembl transcript IDs: ENSMUST00000032961.4, ENSMUST00000187609.2, ENSMUST00000191192.2
Found 62 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCTCTGCCCGTCTACCCTCTGCTTCTTGCTCCCATCTTGCCCTTTTaGTGGGTCTGGAAGGGTGGAAGGGCTCCCTCTCCAGAACCTCAC | + |
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Preference number: 1 (lower is better) Translates to: ALPVYPLLLAPILPF*WVWKGGRAPSPEPH Trigger: GTGAGGTTCTGGAGAGGGAGCCCTTCCACCCTTCCAGACCCAGCAAAAGGGCAAGATGGGAGCAAGAAGCAGAGGGTAGACGGGCAGAGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032961.4 ENSMUST00000191192.2 |
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| 3UTR CCA 90 bp | GTCTACCCTCTGCTTCTTGCTCCCATCTTGCCCTTTTGCTGGGTCTaGAAGGGTGGAAGGGCTCCCTCTCCAGAACCTCACTTAGGTGGG | + |
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Preference number: 1 (lower is better) Translates to: VYPLLLAPILPFCWV*KGGRAPSPEPHLGG Trigger: CCCACCTAAGTGAGGTTCTGGAGAGGGAGCCCTTCCACCCTTCCAGACCCAGCAAAAGGGCAAGATGGGAGCAAGAAGCAGAGGGTAGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032961.4 ENSMUST00000191192.2 |
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| 3UTR GCA 90 bp | TGTGATGTCCTGTATCCATTGCTGGGTGTGATGTCCTGTATCCATTaGTGGGTGTGGTGTCTGTGGTCTGGCCTTATCTCCAGCTCCGTC | + |
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Preference number: 1 (lower is better) Translates to: CDVLYPLLGVMSCIH*WVWCLWSGLISSSV Trigger: GACGGAGCTGGAGATAAGGCCAGACCACAGACACCACACCCAGCAATGGATACAGGACATCACACCCAGCAATGGATACAGGACATCACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032961.4 ENSMUST00000187609.2 ENSMUST00000191192.2 |
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| 3UTR CCA 90 bp | GATGTCCTGTATCCATTGCTGGGTGTGATGTCCTGTATCCATTGCTaGGTGTGGTGTCTGTGGTCTGGCCTTATCTCCAGCTCCGTCTCA | + |
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Preference number: 1 (lower is better) Translates to: DVLYPLLGVMSCIHC*VWCLWSGLISSSVS Trigger: TGAGACGGAGCTGGAGATAAGGCCAGACCACAGACACCACACCCAGCAATGGATACAGGACATCACACCCAGCAATGGATACAGGACATC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000187609.2 ENSMUST00000191192.2 |
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| 3UTR TCA 90 bp | TTACAACTCCTAATTTCTCCAAGGTCCTGTATCCATTGCTGGGTGTaGTGTCCTGTATCCATTGCTGGGTGTGATGTCCTGTATCCATTG | + |
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Preference number: 1 (lower is better) Translates to: LQLLISPRSCIHCWV*CPVSIAGCDVLYPL Trigger: CAATGGATACAGGACATCACACCCAGCAATGGATACAGGACATCACACCCAGCAATGGATACAGGACCTTGGAGAAATTAGGAGTTGTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032961.4 ENSMUST00000187609.2 ENSMUST00000191192.2 |
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| 3UTR CAA 90 bp | GTCAGCAGCTTCCTCTCATGCCCGCCAGGGCTAGGGCGGTTGGTATaGGCAGCAGCTTCTCTCTTGGTCCGACCTTTCCGACCTCCCCCG | + |
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Preference number: 2 (lower is better) Translates to: VSSFLSCPPGLGRLV*AAASLLVRPFRPPP Trigger: CGGGGGAGGTCGGAAAGGTCGGACCAAGAGAGAAGCTGCTGCCAATACCAACCGCCCTAGCCCTGGCGGGCATGAGAGGAAGCTGCTGAC 63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000187609.2 ENSMUST00000191192.2 |
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| 3UTR-3UTR CCA 90 bp | CCCGCCAGGGCTAGGGCGGTTGGTATTGGCAGCAGCTTCTCTCTTGGTCCGACCATCCATTGCTGGGTGTaGTGTCTGTGGTCTGGCCTT | + |
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Preference number: 2 (lower is better) Translates to: PARARAVGIGSSFSLGPTIHCWV*CLWSGL Trigger: AAGGCCAGACCACAGACACCACACCCAGCAATGGAT...GGTCGGACCAAGAGAGAAGCTGCTGCCAATACCAACCGCCCTAGCCCTGGCGGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000187609.2 ENSMUST00000191192.2 |
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| 3UTR CAA 90 bp | GTCTTCCTAGCTCTGCCCGTCTACCCTCTGCTTCTTGCTCCCATCTaGCCCTTTTGCTGGGTCTGGAAGGGTGGAAGGGCTCCCTCTCCA | + |
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Preference number: 2 (lower is better) Translates to: VFLALPVYPLLLAPI*PFCWVWKGGRAPSP Trigger: TGGAGAGGGAGCCCTTCCACCCTTCCAGACCCAGCAAAAGGGCAAGATGGGAGCAAGAAGCAGAGGGTAGACGGGCAGAGCTAGGAAGAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032961.4 ENSMUST00000191192.2 |
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| 3UTR CAA 90 bp | AACTTGGTCAGCAGCTTCCTCTCATGCCCGCCAGGGCTAGGGCGGTaGGTATTGGCAGCAGCTTCTCTCTTGGTCCGACCTTTCCGACCT | + |
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Preference number: 2 (lower is better) Translates to: NLVSSFLSCPPGLGR*VLAAASLLVRPFRP Trigger: AGGTCGGAAAGGTCGGACCAAGAGAGAAGCTGCTGCCAATACCAACCGCCCTAGCCCTGGCGGGCATGAGAGGAAGCTGCTGACCAAGTT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000187609.2 ENSMUST00000191192.2 |
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| 3UTR-3UTR CCA 90 bp | AGTTCTTTTGGGGGCTGTCTTCCTAGCTCTGCCCGTCTACCCTCTGCTTCTTGCCCCTTTTGCTGGGTCTaGAAGGGTGGAAGGGCTCCC | + |
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Preference number: 2 (lower is better) Translates to: SSFGGCLPSSARLPSASCPFCWV*KGGRAP Trigger: GGGAGCCCTTCCACCCTTCCAGACCCAGCAAAAGGG...GCAAGAAGCAGAGGGTAGACGGGCAGAGCTAGGAAGACAGCCCCCAAAAGAACT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 2 transcripts: ENSMUST00000032961.4 ENSMUST00000191192.2 |
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| 3UTR-3UTR CCA 90 bp | GCTGTCTTCCTAGCTCTGCCCGTCTACCCTCTGCTTCTTGCTCCCATCTTGCCCCAGCAGCTTCTCTCTTaGTCCGACCTTTCCGACCTC | + |
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Preference number: 2 (lower is better) Translates to: AVFLALPVYPLLLAPILPQQLLS*SDLSDL Trigger: GAGGTCGGAAAGGTCGGACCAAGAGAGAAGCTGCTG...GGGCAAGATGGGAGCAAGAAGCAGAGGGTAGACGGGCAGAGCTAGGAAGACAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000191192.2 |
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| 3UTR-3UTR TCA 90 bp | GTCAGCAGCTTCCTCTCATGCCCGCCAGGGCTAGGGCGGTTGGTATTGGCAGCAATCCATTGCTGGGTGTaGTGTCCTGTATCCATTGCT | + |
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Preference number: 2 (lower is better) Translates to: VSSFLSCPPGLGRLVLAAIHCWV*CPVSIA Trigger: AGCAATGGATACAGGACATCACACCCAGCAATGGAT...TGCTGCCAATACCAACCGCCCTAGCCCTGGCGGGCATGAGAGGAAGCTGCTGAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000187609.2 ENSMUST00000191192.2 |
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| 3UTR-3UTR CCA 90 bp | GGGGCTGTCTTCCTAGCTCTGCCCGTCTACCCTCTGCTTCTTGCTCCCATCTTGATCCATTGCTGGGTGTaGTGTCTGTGGTCTGGCCTT | + |
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Preference number: 2 (lower is better) Translates to: GAVFLALPVYPLLLAPILIHCWV*CLWSGL Trigger: AAGGCCAGACCACAGACACCACACCCAGCAATGGAT...CAAGATGGGAGCAAGAAGCAGAGGGTAGACGGGCAGAGCTAGGAAGACAGCCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032961.4 ENSMUST00000191192.2 |
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| 3UTR-3UTR CCA 90 bp | GATGTCCTGTATCCATTGCTGGGTGTGGTGTCTGTGGTCTGGCCTTATCTCCAGCTGGGTCTGGAAGGGTaGAAGGGCTCCCTCTCCAGA | + |
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Preference number: 2 (lower is better) Translates to: DVLYPLLGVVSVVWPYLQLGLEG*KGSLSR Trigger: TCTGGAGAGGGAGCCCTTCCACCCTTCCAGACCCAG...CTGGAGATAAGGCCAGACCACAGACACCACACCCAGCAATGGATACAGGACATC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032961.4 ENSMUST00000191192.2 |
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| 3UTR CAA 90 bp | TTGCTGCCACCCAAGGGCATCCGATTTATTTCCCCCACAGTTCTTTaGGGGGCTGTCTTCCTAGCTCTGCCCGTCTACCCTCTGCTTCTT | + |
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Preference number: 2 (lower is better) Translates to: LLPPKGIRFISPTVL*GAVFLALPVYPLLL Trigger: AAGAAGCAGAGGGTAGACGGGCAGAGCTAGGAAGACAGCCCCCAAAAGAACTGTGGGGGAAATAAATCGGATGCCCTTGGGTGGCAGCAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000032961.4 |
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| 3UTR-3UTR GCA 90 bp | TGTTGCTGCCACCCAAGGGCATCCGATTTATTTCCCCCACAGTTCTTTTGGGGGCCCATCTTGCCCTTTTaGTGGGTCTGGAAGGGTGGA | + |
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Preference number: 2 (lower is better) Translates to: CCCHPRASDLFPPQFFWGPILPF*WVWKGG Trigger: TCCACCCTTCCAGACCCAGCAAAAGGGCAAGATGGG...CCCCCAAAAGAACTGTGGGGGAAATAAATCGGATGCCCTTGGGTGGCAGCAACA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000032961.4 |
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| 3UTR-3UTR CCA 90 bp | ATGTCCTGTATCCATTGCTGGGTGTGGTGTCTGTGGTCTGGCCTTATCTCCAGCTGGGTGTGGTGTCTGTaGTCTGGCCTTATCTCCAGC | + |
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Preference number: 2 (lower is better) Translates to: MSCIHCWVWCLWSGLISSWVWCL*SGLISS Trigger: GCTGGAGATAAGGCCAGACCACAGACACCACACCCA...GCTGGAGATAAGGCCAGACCACAGACACCACACCCAGCAATGGATACAGGACAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032961.4 ENSMUST00000187609.2 ENSMUST00000191192.2 |
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| 3UTR-3UTR CCA 90 bp | CCCACAGTTCTTTTGGGGGCTGTCTTCCTAGCTCTGCCCGTCTACCCTCTGCTTTCCTGTATCCATTGCTaGGTGTGGTGTCTGTGGTCT | + |
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Preference number: 2 (lower is better) Translates to: PTVLLGAVFLALPVYPLLSCIHC*VWCLWS Trigger: AGACCACAGACACCACACCCAGCAATGGATACAGGA...AAGCAGAGGGTAGACGGGCAGAGCTAGGAAGACAGCCCCCAAAAGAACTGTGGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032961.4 ENSMUST00000191192.2 |
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| 3UTR-3UTR GCA 90 bp | GCTGTCTTCCTAGCTCTGCCCGTCTACCCTCTGCTTCTTGCTCCCATCTTGCCCAGCAGGCCTAGGTCCTaGTTACAACTCCTAATTTCT | + |
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Preference number: 2 (lower is better) Translates to: AVFLALPVYPLLLAPILPSRPRS*LQLLIS Trigger: AGAAATTAGGAGTTGTAAGCAGGACCTAGGCCTGCT...GGGCAAGATGGGAGCAAGAAGCAGAGGGTAGACGGGCAGAGCTAGGAAGACAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032961.4 ENSMUST00000191192.2 |
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| 3UTR-3UTR GCA 90 bp | TGTGATGTCCTGTATCCATTGCTGGGTGTGGTGTCTGTGGTCTGGCCTTATCTCTTCTTGCTCCCATCTTaGCCTTTTGCTGGGTCTGGA | + |
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Preference number: 2 (lower is better) Translates to: CDVLYPLLGVVSVVWPYLFLLPS*PFAGSG Trigger: TCCAGACCCAGCAAAAGGGCAAGATGGGAGCAAGAA...GAGATAAGGCCAGACCACAGACACCACACCCAGCAATGGATACAGGACATCACA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032961.4 ENSMUST00000191192.2 |
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| 3UTR-3UTR CCA 90 bp | ACGATTTATTGTTGCTGCCACCCAAGGGCATCCGATTTATTTCCCCCACAGTTCTGGGTGTGGTGTCTGTaGTCTGGCCTTATCTCCAGC | + |
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Preference number: 2 (lower is better) Translates to: TIYCCCHPRASDLFPPQFWVWCL*SGLISS Trigger: GCTGGAGATAAGGCCAGACCACAGACACCACACCCA...GAACTGTGGGGGAAATAAATCGGATGCCCTTGGGTGGCAGCAACAATAAATCGT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032961.4 |
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| 3UTR-3UTR CCA 90 bp | TGTGATGTCCTGTATCCATTGCTGGGTGTGGTGTCTGTGGTCTGGCCTTATCTCTCCTGTATCCATTGCTaGGTGTGGTGTCTGTGGTCT | + |
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Preference number: 2 (lower is better) Translates to: CDVLYPLLGVVSVVWPYLSCIHC*VWCLWS Trigger: AGACCACAGACACCACACCCAGCAATGGATACAGGA...GAGATAAGGCCAGACCACAGACACCACACCCAGCAATGGATACAGGACATCACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032961.4 ENSMUST00000187609.2 ENSMUST00000191192.2 |
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| 3UTR-3UTR CCA 90 bp | CTTACAACTCCTAATTTCTCCAAGGTCCTGTATCCATTGCTGGGTGTGATGTCCTGGGTGTGGTGTCTGTaGTCTGGCCTTATCTCCAGC | + |
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Preference number: 2 (lower is better) Translates to: LTTPNFSKVLYPLLGVMSWVWCL*SGLISS Trigger: GCTGGAGATAAGGCCAGACCACAGACACCACACCCA...GGACATCACACCCAGCAATGGATACAGGACCTTGGAGAAATTAGGAGTTGTAAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032961.4 ENSMUST00000187609.2 ENSMUST00000191192.2 |
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| 3UTR-3UTR TCA 90 bp | TGTGATGTCCTGTATCCATTGCTGGGTGTGATGTCCTGTATCCATTGCTGGGTGATCCATTGCTGGGTGTaGTGTCCTGTATCCATTGCT | + |
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Preference number: 2 (lower is better) Translates to: CDVLYPLLGVMSCIHCWVIHCWV*CPVSIA Trigger: AGCAATGGATACAGGACATCACACCCAGCAATGGAT...CACCCAGCAATGGATACAGGACATCACACCCAGCAATGGATACAGGACATCACA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032961.4 ENSMUST00000187609.2 ENSMUST00000191192.2 |
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| 3UTR-3UTR GCA 90 bp | TGTGTGAGGTTAGGACAGGCATATAAATGGCCAGAGTGGGGCGGTCACGTCTTCGAAGCACTCTATCCTTaGTGTTTACTCAAGTATAGA | + |
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Preference number: 2 (lower is better) Translates to: CVRLGQAYKWPEWGGHVFEALYP*CLLKYR Trigger: TCTATACTTGAGTAAACAGCAAGGATAGAGTGCTTC...GAAGACGTGACCGCCCCACTCTGGCCATTTATATGCCTGTCCTAACCTCACACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000187609.2 |
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| 3UTR-3UTR GCA 90 bp | ACTCCTAATTTCTCCAAGGTCCTGTATCCATTGCTGGGTGTGATGTCCTGTATCAGCAGGCCTAGGTCCTaGTTACAACTCCTAATTTCT | + |
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Preference number: 2 (lower is better) Translates to: TPNFSKVLYPLLGVMSCISRPRS*LQLLIS Trigger: AGAAATTAGGAGTTGTAAGCAGGACCTAGGCCTGCT...GATACAGGACATCACACCCAGCAATGGATACAGGACCTTGGAGAAATTAGGAGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032961.4 ENSMUST00000187609.2 ENSMUST00000191192.2 |
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| 3UTR-3UTR CAA 90 bp | CTCCCCCGACTGGTGGAGCAGGAGGTAGAGGAGGTGTGTGAGGTTAGGACAGGCGATGTCCTGTATCCATaGCTGGGTGTGGTGTCTGTG | + |
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Preference number: 3 (lower is better) Translates to: LPRLVEQEVEEVCEVRTGDVLYP*LGVVSV Trigger: CACAGACACCACACCCAGCAATGGATACAGGACATC...GCCTGTCCTAACCTCACACACCTCCTCTACCTCCTGCTCCACCAGTCGGGGGAG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000187609.2 |
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| 3UTR CCA 72 bp | CTGCTTCTTGCTCCCATCTTGCCCTTTTGCTGGGTCTaGAAGGGTGGAAGGGCTCCCTCTCCAGAACCTCAC | + |
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Preference number: 3 (lower is better) Translates to: LLLAPILPFCWV*KGGRAPSPEPH Trigger: GTGAGGTTCTGGAGAGGGAGCCCTTCCACCCTTCCAGACCCAGCAAAAGGGCAAGATGGGAGCAAGAAGCAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032961.4 ENSMUST00000191192.2 |
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| 3UTR-3UTR CAA 90 bp | GGGGCTGTCTTCCTAGCTCTGCCCGTCTACCCTCTGCTTCTTGCTCCCATCTTGGATGTCCTGTATCCATaGCTGGGTGTGGTGTCTGTG | + |
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Preference number: 3 (lower is better) Translates to: GAVFLALPVYPLLLAPILDVLYP*LGVVSV Trigger: CACAGACACCACACCCAGCAATGGATACAGGACATC...CAAGATGGGAGCAAGAAGCAGAGGGTAGACGGGCAGAGCTAGGAAGACAGCCCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032961.4 ENSMUST00000191192.2 |
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| 3UTR CCA 72 bp | TTGCTGGGTGTGATGTCCTGTATCCATTGCTGGGTGTaGTGTCTGTGGTCTGGCCTTATCTCCAGCTCCGTC | + |
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Preference number: 3 (lower is better) Translates to: LLGVMSCIHCWV*CLWSGLISSSV Trigger: GACGGAGCTGGAGATAAGGCCAGACCACAGACACCACACCCAGCAATGGATACAGGACATCACACCCAGCAA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032961.4 ENSMUST00000187609.2 ENSMUST00000191192.2 |
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| 3UTR-3UTR CAA 90 bp | GCTGGGTGTGATGTCCTGTATCCATTGCTGGGTGTGGTGTCTGTGGTCTGGCCTAAGGTCCTGTATCCATaGCTGGGTGTGATGTCCTGT | + |
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Preference number: 3 (lower is better) Translates to: AGCDVLYPLLGVVSVVWPKVLYP*LGVMSC Trigger: ACAGGACATCACACCCAGCAATGGATACAGGACCTT...AGGCCAGACCACAGACACCACACCCAGCAATGGATACAGGACATCACACCCAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032961.4 ENSMUST00000187609.2 ENSMUST00000191192.2 |
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| 3UTR-3UTR CAA 90 bp | TGGAAGGGCTCCCTCTCCAGAACCTCACTTAGGTGGGAAAGAATCAAGCAGGCCGATGTCCTGTATCCATaGCTGGGTGTGATGTCCTGT | + |
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Preference number: 3 (lower is better) Translates to: WKGSLSRTSLRWERIKQADVLYP*LGVMSC Trigger: ACAGGACATCACACCCAGCAATGGATACAGGACATC...GGCCTGCTTGATTCTTTCCCACCTAAGTGAGGTTCTGGAGAGGGAGCCCTTCCA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032961.4 ENSMUST00000191192.2 |
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| 3UTR GCA 72 bp | CTGTATCCATTGCTGGGTGTGATGTCCTGTATCCATTaGTGGGTGTGGTGTCTGTGGTCTGGCCTTATCTCC | + |
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Preference number: 3 (lower is better) Translates to: LYPLLGVMSCIH*WVWCLWSGLIS Trigger: GGAGATAAGGCCAGACCACAGACACCACACCCAGCAATGGATACAGGACATCACACCCAGCAATGGATACAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032961.4 ENSMUST00000187609.2 ENSMUST00000191192.2 |
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| 3UTR CCA 72 bp | TATCCATTGCTGGGTGTGATGTCCTGTATCCATTGCTaGGTGTGGTGTCTGTGGTCTGGCCTTATCTCCAGC | + |
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Preference number: 3 (lower is better) Translates to: YPLLGVMSCIHC*VWCLWSGLISS Trigger: GCTGGAGATAAGGCCAGACCACAGACACCACACCCAGCAATGGATACAGGACATCACACCCAGCAATGGATA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032961.4 ENSMUST00000187609.2 ENSMUST00000191192.2 |
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| 3UTR-3UTR CAA 90 bp | AAGGGTGGAAGGGCTCCCTCTCCAGAACCTCACTTAGGTGGGAAAGAATCAAGCGATGTCCTGTATCCATaGCTGGGTGTGATGTCCTGT | + |
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Preference number: 3 (lower is better) Translates to: KGGRAPSPEPHLGGKESSDVLYP*LGVMSC Trigger: ACAGGACATCACACCCAGCAATGGATACAGGACATC...GCTTGATTCTTTCCCACCTAAGTGAGGTTCTGGAGAGGGAGCCCTTCCACCCTT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032961.4 ENSMUST00000191192.2 |
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| 3UTR TCA 72 bp | TTGCTGGGTGTGATGTCCTGTATCCATTGCTGGGTGTaGTGTCCTGTATCCATTGCTGGGTGTGGTGTCTGT | + |
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Preference number: 3 (lower is better) Translates to: LLGVMSCIHCWV*CPVSIAGCGVC Trigger: ACAGACACCACACCCAGCAATGGATACAGGACATCACACCCAGCAATGGATACAGGACATCACACCCAGCAA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032961.4 ENSMUST00000187609.2 ENSMUST00000191192.2 |
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| 3UTR CCA 72 bp | TGTGTGAGGTTAGGACAGGCATATAAATGGCCAGAGTaGGGCGGTCACGTCTTCACGTCTGAAGCACTCTAT | + |
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Preference number: 3 (lower is better) Translates to: CVRLGQAYKWPE*GGHVFTSEALY Trigger: ATAGAGTGCTTCAGACGTGAAGACGTGACCGCCCCACTCTGGCCATTTATATGCCTGTCCTAACCTCACACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000187609.2 |
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| 3UTR-3UTR CAA 90 bp | ATTTATTGTTGCTGCCACCCAAGGGCATCCGATTTATTTCCCCCACAGTTCTTTGATGTCCTGTATCCATaGCTGGGTGTGGTGTCTGTG | + |
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Preference number: 3 (lower is better) Translates to: IYCCCHPRASDLFPPQFFDVLYP*LGVVSV Trigger: CACAGACACCACACCCAGCAATGGATACAGGACATC...AAAGAACTGTGGGGGAAATAAATCGGATGCCCTTGGGTGGCAGCAACAATAAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032961.4 |
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| 3UTR-3UTR CAA 90 bp | ACTCCTAATTTCTCCAAGGTCCTGTATCCATTGCTGGGTGTGATGTCCTGTATCAAGGTCCTGTATCCATaGCTGGGTGTGATGTCCTGT | + |
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Preference number: 3 (lower is better) Translates to: TPNFSKVLYPLLGVMSCIKVLYP*LGVMSC Trigger: ACAGGACATCACACCCAGCAATGGATACAGGACCTT...GATACAGGACATCACACCCAGCAATGGATACAGGACCTTGGAGAAATTAGGAGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032961.4 ENSMUST00000187609.2 ENSMUST00000191192.2 |
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| 3UTR CAA 72 bp | GGGCTAGGGCGGTTGGTATTGGCAGCAGCTTCTCTCTaGGTCCGACCTTTCCGACCTCCCCCGACTGGTGGA | + |
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Preference number: 4 (lower is better) Translates to: GLGRLVLAAASL*VRPFRPPPTGG Trigger: TCCACCAGTCGGGGGAGGTCGGAAAGGTCGGACCAAGAGAGAAGCTGCTGCCAATACCAACCGCCCTAGCCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000187609.2 ENSMUST00000191192.2 |
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| 3UTR CAA 72 bp | AGCAGCTTCCTCTCATGCCCGCCAGGGCTAGGGCGGTaGGTATTGGCAGCAGCTTCTCTCTTGGTCCGACCT | + |
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Preference number: 4 (lower is better) Translates to: SSFLSCPPGLGR*VLAAASLLVRP Trigger: AGGTCGGACCAAGAGAGAAGCTGCTGCCAATACCAACCGCCCTAGCCCTGGCGGGCATGAGAGGAAGCTGCT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000187609.2 ENSMUST00000191192.2 |
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| 3UTR CAA 72 bp | TTCCTCTCATGCCCGCCAGGGCTAGGGCGGTTGGTATaGGCAGCAGCTTCTCTCTTGGTCCGACCTTTCCGA | + |
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Preference number: 4 (lower is better) Translates to: FLSCPPGLGRLV*AAASLLVRPFR Trigger: TCGGAAAGGTCGGACCAAGAGAGAAGCTGCTGCCAATACCAACCGCCCTAGCCCTGGCGGGCATGAGAGGAA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000187609.2 ENSMUST00000191192.2 |
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| CDS-3UTR CCA 90 bp | TGTTGCTGCCACCCAAGGGCATCCGATTTATTTCCCCCACAGTTCTTTTGGGGGGTTGCTGGGAAGGGTTaGCTGTTGGTGGCAAGGTGG | + |
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Preference number: 4 (lower is better) Translates to: CCCHPRASDLFPPQFFWGVAGKG*LLVARW Trigger: CCACCTTGCCACCAACAGCCAACCCTTCCCAGCAAC...CCCCCAAAAGAACTGTGGGGGAAATAAATCGGATGCCCTTGGGTGGCAGCAACA 56% GC, longest homopolymer 6 nt, total homopolymer stretches 15 nt. Matches the following 1 transcripts: ENSMUST00000032961.4 |
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| CDS-3UTR CCA 90 bp | GATGTCCTGTATCCATTGCTGGGTGTGGTGTCTGTGGTCTGGCCTTATCTCCAGGTTGCTGGGAAGGGTTaGCTGTTGGTGGCAAGGTGG | + |
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Preference number: 4 (lower is better) Translates to: DVLYPLLGVVSVVWPYLQVAGKG*LLVARW Trigger: CCACCTTGCCACCAACAGCCAACCCTTCCCAGCAAC...CTGGAGATAAGGCCAGACCACAGACACCACACCCAGCAATGGATACAGGACATC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032961.4 ENSMUST00000187609.2 |
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| 3UTR CAA 72 bp | CCCAAGGGCATCCGATTTATTTCCCCCACAGTTCTTTaGGGGGCTGTCTTCCTAGCTCTGCCCGTCTACCCT | + |
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Preference number: 4 (lower is better) Translates to: PKGIRFISPTVL*GAVFLALPVYP Trigger: AGGGTAGACGGGCAGAGCTAGGAAGACAGCCCCCAAAAGAACTGTGGGGGAAATAAATCGGATGCCCTTGGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000032961.4 ENSMUST00000191192.2 |
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| CDS-3UTR CCA 90 bp | TGTTGCTGCCACCCAAGGGCATCCGATTTATTTCCCCCACAGTTCTTTTGGGGGCAGCAGCTTCTCTCTTaGTCCGACCTTTCCGACCTC | + |
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Preference number: 4 (lower is better) Translates to: CCCHPRASDLFPPQFFWGQQLLS*SDLSDL Trigger: GAGGTCGGAAAGGTCGGACCAAGAGAGAAGCTGCTG...CCCCCAAAAGAACTGTGGGGGAAATAAATCGGATGCCCTTGGGTGGCAGCAACA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000032961.4 |
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| 3UTR CAA 72 bp | CCTGTATCCATTGCTGGGTGTGATGTCCTGTATCCATaGCTGGGTGTGGTGTCTGTGGTCTGGCCTTATCTC | + |
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Preference number: 4 (lower is better) Translates to: PVSIAGCDVLYP*LGVVSVVWPYL Trigger: GAGATAAGGCCAGACCACAGACACCACACCCAGCAATGGATACAGGACATCACACCCAGCAATGGATACAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032961.4 ENSMUST00000187609.2 ENSMUST00000191192.2 |
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| CDS-3UTR CCA 90 bp | CCCACAGTTCTTTTGGGGGCTGTCTTCCTAGCTCTGCCCGTCTACCCTCTGCTTTTCCTTTCAGAGTTCTaGAACTTGGTCAGCAGCTTC | + |
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Preference number: 4 (lower is better) Translates to: PTVLLGAVFLALPVYPLLFLSEF*NLVSSF Trigger: GAAGCTGCTGACCAAGTTCCAGAACTCTGAAAGGAA...AAGCAGAGGGTAGACGGGCAGAGCTAGGAAGACAGCCCCCAAAAGAACTGTGGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032961.4 |
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| CDS-3UTR TCA 90 bp | TCCATTGCTGGGTGTGATGTCCTGTATCCATTGCTGGGTGTGGTGTCTGTGGTCTGGGCCAGGCTGTACTaGTCATATTCATCCAGGATT | + |
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Preference number: 4 (lower is better) Translates to: SIAGCDVLYPLLGVVSVVWARLY*SYSSRI Trigger: AATCCTGGATGAATATGATCAGTACAGCCTGGCCCA...GACCACAGACACCACACCCAGCAATGGATACAGGACATCACACCCAGCAATGGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032961.4 ENSMUST00000187609.2 |
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| 3UTR CAA 72 bp | CCTGTATCCATTGCTGGGTGTGATGTCCTGTATCCATaGCTGGGTGTGATGTCCTGTATCCATTGCTGGGTG | + |
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Preference number: 4 (lower is better) Translates to: PVSIAGCDVLYP*LGVMSCIHCWV Trigger: CACCCAGCAATGGATACAGGACATCACACCCAGCAATGGATACAGGACATCACACCCAGCAATGGATACAGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032961.4 ENSMUST00000187609.2 ENSMUST00000191192.2 |
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| CDS-3UTR TCA 90 bp | ACGATTTATTGTTGCTGCCACCCAAGGGCATCCGATTTATTTCCCCCACAGTTCTGGGCCAGGCTGTACTaGTCATATTCATCCAGGATT | + |
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Preference number: 4 (lower is better) Translates to: TIYCCCHPRASDLFPPQFWARLY*SYSSRI Trigger: AATCCTGGATGAATATGATCAGTACAGCCTGGCCCA...GAACTGTGGGGGAAATAAATCGGATGCCCTTGGGTGGCAGCAACAATAAATCGT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032961.4 |
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| 3UTR CAA 72 bp | CTTACAACTCCTAATTTCTCCAAGGTCCTGTATCCATaGCTGGGTGTGATGTCCTGTATCCATTGCTGGGTG | + |
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Preference number: 4 (lower is better) Translates to: LTTPNFSKVLYP*LGVMSCIHCWV Trigger: CACCCAGCAATGGATACAGGACATCACACCCAGCAATGGATACAGGACCTTGGAGAAATTAGGAGTTGTAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000032961.4 ENSMUST00000187609.2 ENSMUST00000191192.2 |
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| CDS-3UTR CAA 90 bp | TGCTGGGTCTGGAAGGGTGGAAGGGCTCCCTCTCCAGAACCTCACTTAGGTGGGGGTTGCTGGGAAGGGTaGGCTGTTGGTGGCAAGGTG | + |
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Preference number: 5 (lower is better) Translates to: CWVWKGGRAPSPEPHLGGGCWEG*AVGGKV Trigger: CACCTTGCCACCAACAGCCAACCCTTCCCAGCAACC...CCCACCTAAGTGAGGTTCTGGAGAGGGAGCCCTTCCACCCTTCCAGACCCAGCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032961.4 |
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| CDS-3UTR CAA 90 bp | GGTGTGGTGTCTGTGGTCTGGCCTTATCTCCAGCTCCGTCTCAGCGCCAGGCTTGGTTGCTGGGAAGGGTaGGCTGTTGGTGGCAAGGTG | + |
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Preference number: 5 (lower is better) Translates to: GVVSVVWPYLQLRLSARLGCWEG*AVGGKV Trigger: CACCTTGCCACCAACAGCCAACCCTTCCCAGCAACC...AAGCCTGGCGCTGAGACGGAGCTGGAGATAAGGCCAGACCACAGACACCACACC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000187609.2 |
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| CDS-3UTR CAA 90 bp | GATGTCCTGTATCCATTGCTGGGTGTGGTGTCTGTGGTCTGGCCTTATCTCCAGCCAGGGCTAGGGCGGTaGGTATTGGCAGCAGCTTCT | + |
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Preference number: 5 (lower is better) Translates to: DVLYPLLGVVSVVWPYLQPGLGR*VLAAAS Trigger: AGAAGCTGCTGCCAATACCAACCGCCCTAGCCCTGG...CTGGAGATAAGGCCAGACCACAGACACCACACCCAGCAATGGATACAGGACATC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032961.4 |
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| CDS-3UTR CAA 90 bp | TGGAAGGGTGGAAGGGCTCCCTCTCCAGAACCTCACTTAGGTGGGAAAGAATCAGCAGCAGCTTCTCTCTaGGTCCGACCTTTCCGACCT | + |
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Preference number: 5 (lower is better) Translates to: WKGGRAPSPEPHLGGKESAAASL*VRPFRP Trigger: AGGTCGGAAAGGTCGGACCAAGAGAGAAGCTGCTGC...TGATTCTTTCCCACCTAAGTGAGGTTCTGGAGAGGGAGCCCTTCCACCCTTCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032961.4 |
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| CDS-3UTR CAA 90 bp | ATGTCCTGTATCCATTGCTGGGTGTGGTGTCTGTGGTCTGGCCTTATCTCCAGCCTAGGGCGGTTGGTATaGGCAGCAGCTTCTCTCTTG | + |
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Preference number: 5 (lower is better) Translates to: MSCIHCWVWCLWSGLISSLGRLV*AAASLL Trigger: CAAGAGAGAAGCTGCTGCCAATACCAACCGCCCTAG...GCTGGAGATAAGGCCAGACCACAGACACCACACCCAGCAATGGATACAGGACAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032961.4 |
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| CDS TCA 90 bp | CCTTTCCGACCTCCCCCGACGACACAGGGATGGGCCAGGCTGTACTaGTCATATTCATCCAGGATTCCATCTTCATCCTCTAGGTTTAGA | + |
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Preference number: 5 (lower is better) Translates to: PFRPPPTTQGWARLY*SYSSRIPSSSSRFR Trigger: TCTAAACCTAGAGGATGAAGATGGAATCCTGGATGAATATGATCAGTACAGCCTGGCCCATCCCTGTGTCGTCGGGGGAGGTCGGAAAGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032961.4 |
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| CDS CAA 90 bp | TGCCCGCCAGGGCTAGGGCGGTTGGTATTGGCAGCAGCTTCTCTCTaGGTCCGACCTTTCCGACCTCCCCCGACGACACAGGGATGGGCC | + |
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Preference number: 6 (lower is better) Translates to: CPPGLGRLVLAAASL*VRPFRPPPTTQGWA Trigger: GGCCCATCCCTGTGTCGTCGGGGGAGGTCGGAAAGGTCGGACCAAGAGAGAAGCTGCTGCCAATACCAACCGCCCTAGCCCTGGCGGGCA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032961.4 |
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| CDS CAA 72 bp | GGGCTAGGGCGGTTGGTATTGGCAGCAGCTTCTCTCTaGGTCCGACCTTTCCGACCTCCCCCGACGACACAG | + |
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Preference number: 6 (lower is better) Translates to: GLGRLVLAAASL*VRPFRPPPTTQ Trigger: CTGTGTCGTCGGGGGAGGTCGGAAAGGTCGGACCAAGAGAGAAGCTGCTGCCAATACCAACCGCCCTAGCCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032961.4 |
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| CDS TCA 72 bp | CCTCCCCCGACGACACAGGGATGGGCCAGGCTGTACTaGTCATATTCATCCAGGATTCCATCTTCATCCTCT | + |
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Preference number: 6 (lower is better) Translates to: PPPTTQGWARLY*SYSSRIPSSSS Trigger: AGAGGATGAAGATGGAATCCTGGATGAATATGATCAGTACAGCCTGGCCCATCCCTGTGTCGTCGGGGGAGG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032961.4 |
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| CDS GCA 72 bp | TCCAGGATTCCATCTTCATCCTCTAGGTTTAGAGGTTaGTGGGAAGGGTTGGCTGTTGGTGGCAAGGTGGCC | + |
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Preference number: 6 (lower is better) Translates to: SRIPSSSSRFRG*WEGLAVGGKVA Trigger: GGCCACCTTGCCACCAACAGCCAACCCTTCCCAGCAACCTCTAAACCTAGAGGATGAAGATGGAATCCTGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000032961.4 ENSMUST00000187609.2 |
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