RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NUP93 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000032939

Ensembl transcript IDs: ENSMUST00000079961.14, ENSMUST00000109547.2, ENSMUST00000211822.2, ENSMUST00000212824.2

Found 347 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CAAGAACCAACACACCTTTGTTTTGTTATTGAAATCAGGCAATACTaGGTTAAGGTGGGAAGACCCACAATTCTTTGCTTAAAATATCCC +
Preference number: 1 (lower is better)
Translates to: QEPTHLCFVIEIRQY*VKVGRPTILCLKYP
Trigger: GGGATATTTTAAGCAAAGAATTGTGGGTCTTCCCACCTTAACCCAGTATTGCCTGATTTCAATAACAAAACAAAGGTGTGTTGGTTCTTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
3UTR-3UTR CCA 90 bp GATTTACACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACACAACAGAAACAAAACTaGAAACCCACCCCAGCTGGC +
Preference number: 2 (lower is better)
Translates to: DLHTYVASHSLAPKQLWTQQKQN*KPTPAG
Trigger: GCCAGCTGGGGTGGGTTTCCAGTTTTGTTTCTGTTG...TGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTGTAAATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
3UTR-3UTR CCA 90 bp CACAATTCTTTGCTTAAAATATCCCAAAGCATCACAGCAGTAACCACGGAACTCCAGTCTGAGTTTACATaGTGCAGGAGTGGGGTCTGC +
Preference number: 2 (lower is better)
Translates to: HNSLLKISQSITAVTTELQSEFT*CRSGVC
Trigger: GCAGACCCCACTCCTGCACCATGTAAACTCAGACTG...GAGTTCCGTGGTTACTGCTGTGATGCTTTGGGATATTTTAAGCAAAGAATTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
3UTR-3UTR CCA 90 bp TTTAAAGTCACATTGTCCAGATTTACACACCTATGTAGCCTCTCATTCTCTGGCCAACAGAAACAAAACTaGAAACCCACCCCAGCTGGC +
Preference number: 2 (lower is better)
Translates to: FKVTLSRFTHLCSLSFSGQQKQN*KPTPAG
Trigger: GCCAGCTGGGGTGGGTTTCCAGTTTTGTTTCTGTTG...GCCAGAGAATGAGAGGCTACATAGGTGTGTAAATCTGGACAATGTGACTTTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
3UTR CAA 90 bp ACAGTCAGTTCTGAAATCCAAAGCAAGAACCAACACACCTTTGTTTaGTTATTGAAATCAGGCAATACTGGGTTAAGGTGGGAAGACCCA +
Preference number: 2 (lower is better)
Translates to: TVSSEIQSKNQHTFV*LLKSGNTGLRWEDP
Trigger: TGGGTCTTCCCACCTTAACCCAGTATTGCCTGATTTCAATAACAAAACAAAGGTGTGTTGGTTCTTGCTTTGGATTTCAGAACTGACTGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
3UTR CAA 90 bp AGTTCTGAAATCCAAAGCAAGAACCAACACACCTTTGTTTTGTTATaGAAATCAGGCAATACTGGGTTAAGGTGGGAAGACCCACAATTC +
Preference number: 2 (lower is better)
Translates to: SSEIQSKNQHTFVLL*KSGNTGLRWEDPQF
Trigger: GAATTGTGGGTCTTCCCACCTTAACCCAGTATTGCCTGATTTCAATAACAAAACAAAGGTGTGTTGGTTCTTGCTTTGGATTTCAGAACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
3UTR TCA 72 bp GAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTaGCAGTGTGCAGTCCCAGACCCCATCAAACACAGC +
Preference number: 3 (lower is better)
Translates to: ETHPSWPTCLIY*QCAVPDPIKHS
Trigger: GCTGTGTTTGATGGGGTCTGGGACTGCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
3UTR CCA 72 bp ACACACCTTTGTTTTGTTATTGAAATCAGGCAATACTaGGTTAAGGTGGGAAGACCCACAATTCTTTGCTTA +
Preference number: 3 (lower is better)
Translates to: THLCFVIEIRQY*VKVGRPTILCL
Trigger: TAAGCAAAGAATTGTGGGTCTTCCCACCTTAACCCAGTATTGCCTGATTTCAATAACAAAACAAAGGTGTGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR TCA 90 bp GGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCCCTGGGATGTGCGTGTaGGGGTACGGGAACGCAGGC +
Preference number: 4 (lower is better)
Translates to: GNPPQLAHVPNILTVCSPPGMCV*GYGNAG
Trigger: GCCTGCGTTCCCGTACCCTCACACGCACATCCCAGG...GGGACTGCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp GGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCGGTGCTGGGCTCGACTaGCGACTTGTGATGCGGCAA +
Preference number: 4 (lower is better)
Translates to: GNPPQLAHVPNILTVCSPGAGLD*RLVMRQ
Trigger: TTGCCGCATCACAAGTCGTCAGTCGAGCCCAGCACC...GGGACTGCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp CGGAACTCCTCTGGGCTCCAGTCTGAGTTTACATGGTGCAGGAGTGGGGTCTGCGGTGCTGGGCTCGACTaGCGACTTGTGATGCGGCAA +
Preference number: 4 (lower is better)
Translates to: RNSSGLQSEFTWCRSGVCGAGLD*RLVMRQ
Trigger: TTGCCGCATCACAAGTCGTCAGTCGAGCCCAGCACC...GCAGACCCCACTCCTGCACCATGTAAACTCAGACTGGAGCCCAGAGGAGTTCCG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR GCA 90 bp GGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCTACGCACTTCCACACTaGTCCGGCTCTTCAGGGCGT +
Preference number: 4 (lower is better)
Translates to: GNPPQLAHVPNILTVCSPYALPH*SGSSGR
Trigger: ACGCCCTGAAGAGCCGGAGCAGTGTGGAAGTGCGTA...GGGACTGCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp CATGGTGCAGGAGTGGGGTCTGCTTTCTGCCTCCAGTGTGAAGAAGCTTCCAGCCCGCCCAGCTGTGCCTaGTGCAGATTTCCGAAGACA +
Preference number: 4 (lower is better)
Translates to: HGAGVGSAFCLQCEEASSPPSCA*CRFPKT
Trigger: TGTCTTCGGAAATCTGCATCAGGCACAGCTGGGCGG...GCTGGAAGCTTCTTCACACTGGAGGCAGAAAGCAGACCCCACTCCTGCACCATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR CCA 90 bp GCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCAGACCCCATCAAACACAGGCCACATGGACAGCATaGCAGCGCAGCCGCTCCATG +
Preference number: 4 (lower is better)
Translates to: AHVPNILTVCSPRPHQTQATWTA*QRSRSM
Trigger: CATGGAGCGGCTGCGCTGCCATGCTGTCCATGTGGC...CTGTGTTTGATGGGGTCTGGGACTGCACACTGTCAGTATATTAGGCACGTGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp GGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCCTGCTTCTGGAACTGTaGGAGAGTGAGCCTGTCTTG +
Preference number: 4 (lower is better)
Translates to: GNPPQLAHVPNILTVCSPLLLEL*ESEPVL
Trigger: CAAGACAGGCTCACTCTCTCACAGTTCCAGAAGCAG...GGGACTGCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp GGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCCTGGGGCCTGGTTGCTaGAGATGGACTTGTTCCTTT +
Preference number: 4 (lower is better)
Translates to: GNPPQLAHVPNILTVCSPLGPGC*RWTCSF
Trigger: AAAGGAACAAGTCCATCTTCAGCAACCAGGCCCCAG...GGGACTGCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp CGGAACTCCTCTGGGCTCCAGTCTGAGTTTACATGGTGCAGGAGTGGGGTCTGCCTGGGGCCTGGTTGCTaGAGATGGACTTGTTCCTTT +
Preference number: 4 (lower is better)
Translates to: RNSSGLQSEFTWCRSGVCLGPGC*RWTCSF
Trigger: AAAGGAACAAGTCCATCTTCAGCAACCAGGCCCCAG...GCAGACCCCACTCCTGCACCATGTAAACTCAGACTGGAGCCCAGAGGAGTTCCG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR CCA 90 bp GGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCGAGGTTCAAAAGTGGTaGCTGCGCTCAGACTCTCCA +
Preference number: 4 (lower is better)
Translates to: GNPPQLAHVPNILTVCSPEVQKW*LRSDSP
Trigger: TGGAGAGTCTGAGCGCAGCCACCACTTTTGAACCTC...GGGACTGCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp GGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCAATGCCCAGACAGGATaGCCTTCTACCTCTCCATCC +
Preference number: 4 (lower is better)
Translates to: GNPPQLAHVPNILTVCSPNAQTG*PSTSPS
Trigger: GGATGGAGAGGTAGAAGGCCATCCTGTCTGGGCATT...GGGACTGCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp CCAAAGCATCACAGCAGTAACCACGGAACTCCTCTGGGCTCCAGTCTGAGTTTAGCCACATGGACAGCATaGCAGCGCAGCCGCTCCATG +
Preference number: 4 (lower is better)
Translates to: PKHHSSNHGTPLGSSLSLATWTA*QRSRSM
Trigger: CATGGAGCGGCTGCGCTGCCATGCTGTCCATGTGGC...TAAACTCAGACTGGAGCCCAGAGGAGTTCCGTGGTTACTGCTGTGATGCTTTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR CCA 90 bp GGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCCTTCTCTTGGGTCCGTaGACTCAAACTTGCGGGTGT +
Preference number: 4 (lower is better)
Translates to: GNPPQLAHVPNILTVCSPLLLGP*TQTCGC
Trigger: ACACCCGCAAGTTTGAGTCCACGGACCCAAGAGAAG...GGGACTGCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp AAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCGAGCCTGTCTTGTGGTaGGCTGGTGCCGTCATCATC +
Preference number: 4 (lower is better)
Translates to: KTGNPPQLAHVPNILTVCEPVLW*AGAVII
Trigger: GATGATGACGGCACCAGCTCACCACAAGACAGGCTC...GCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp CATGGTGCAGGAGTGGGGTCTGCTTTCTGCCTCCAGTGTGAAGAAGCTTCCAGCCTGCTTCTGGAACTGTaGGAGAGTGAGCCTGTCTTG +
Preference number: 4 (lower is better)
Translates to: HGAGVGSAFCLQCEEASSLLLEL*ESEPVL
Trigger: CAAGACAGGCTCACTCTCTCACAGTTCCAGAAGCAG...GCTGGAAGCTTCTTCACACTGGAGGCAGAAAGCAGACCCCACTCCTGCACCATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR TCA 90 bp GCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCAGACCCCATCAAACACAGGCTGCTGGTTCACCGTaGAGTGGGACTCGCCATAGT +
Preference number: 4 (lower is better)
Translates to: AHVPNILTVCSPRPHQTQAAGSP*SGTRHS
Trigger: ACTATGGCGAGTCCCACTTCACGGTGAACCAGCAGC...CTGTGTTTGATGGGGTCTGGGACTGCACACTGTCAGTATATTAGGCACGTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp GCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCAGACCCCATCAAACACAGTCGTGGCTGAGGAGTTaGGCACTCTGTCCAGAGGAC +
Preference number: 4 (lower is better)
Translates to: AHVPNILTVCSPRPHQTQSWLRS*ALCPED
Trigger: GTCCTCTGGACAGAGTGCTCAACTCCTCAGCCACGA...CTGTGTTTGATGGGGTCTGGGACTGCACACTGTCAGTATATTAGGCACGTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp AAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCAGTCACGGTCTTCAATaGCTCGCTGGGGCCTGGTTG +
Preference number: 4 (lower is better)
Translates to: KTGNPPQLAHVPNILTVCSHGLQ*LAGAWL
Trigger: CAACCAGGCCCCAGCGAGTCATTGAAGACCGTGACT...GCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp GGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCGTGGAAGCTCAGAGATaGCTTCAGTCTCAGCAGCAA +
Preference number: 4 (lower is better)
Translates to: GNPPQLAHVPNILTVCSPVEAQR*LQSQQQ
Trigger: TTGCTGCTGAGACTGAAGGCATCTCTGAGCTTCCAC...GGGACTGCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp GGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCCATAGGCCATCTCAATaGTATCCAGAGAGCTTCGCC +
Preference number: 4 (lower is better)
Translates to: GNPPQLAHVPNILTVCSPHRPSQ*YPESFA
Trigger: GGCGAAGCTCTCTGGATAGCATTGAGATGGCCTATG...GGGACTGCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp GGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCTTCTTTGTTAGACTGTaGGGCGCTGATCTGTGGGAC +
Preference number: 4 (lower is better)
Translates to: GNPPQLAHVPNILTVCSPFFVRL*GADLWD
Trigger: GTCCCACAGATCAGCGCCCCACAGTCTAACAAAGAA...GGGACTGCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp AAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCAGCTGTTCAGCTTGCTaGAGGAGCTCACCAAACCCC +
Preference number: 4 (lower is better)
Translates to: KTGNPPQLAHVPNILTVCSCSAC*RSSPNP
Trigger: GGGGTTTGGTGAGCTCCTTCAGCAAGCTGAACAGCT...GCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp CACAACAGAAACAAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATAGGTGCTGGGCTCGACTaGCGACTTGTGATGCGGCAA +
Preference number: 4 (lower is better)
Translates to: HNRNKTGNPPQLAHVPNIGAGLD*RLVMRQ
Trigger: TTGCCGCATCACAAGTCGTCAGTCGAGCCCAGCACC...TATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTTGTTTCTGTTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp CGGAACTCCTCTGGGCTCCAGTCTGAGTTTACATGGTGCAGGAGTGGGGTCTGCTCGGCTACTTCACTCTaGTTGTCGGTGATATCGCAT +
Preference number: 4 (lower is better)
Translates to: RNSSGLQSEFTWCRSGVCSATSL*LSVISH
Trigger: ATGCGATATCACCGACAATCAGAGTGAAGTAGCCGA...GCAGACCCCACTCCTGCACCATGTAAACTCAGACTGGAGCCCAGAGGAGTTCCG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR TCA 90 bp CCAAAGCATCACAGCAGTAACCACGGAACTCCTCTGGGCTCCAGTCTGAGTTTAGAGCCTGTCTTGTGGTaGGCTGGTGCCGTCATCATC +
Preference number: 4 (lower is better)
Translates to: PKHHSSNHGTPLGSSLSLEPVLW*AGAVII
Trigger: GATGATGACGGCACCAGCTCACCACAAGACAGGCTC...TAAACTCAGACTGGAGCCCAGAGGAGTTCCGTGGTTACTGCTGTGATGCTTTGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR TCA 90 bp GCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCAGACCCCATCAAACACAGGGAACTGTGAGAGAGTaGGCCTGTCTTGTGGTGAGC +
Preference number: 4 (lower is better)
Translates to: AHVPNILTVCSPRPHQTQGTVRE*ACLVVS
Trigger: GCTCACCACAAGACAGGCTCACTCTCTCACAGTTCC...CTGTGTTTGATGGGGTCTGGGACTGCACACTGTCAGTATATTAGGCACGTGGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp GTTTACATGGTGCAGGAGTGGGGTCTGCTTTCTGCCTCCAGTGTGAAGAAGCTTGCTGCTGGTTCACCGTaGAGTGGGACTCGCCATAGT +
Preference number: 4 (lower is better)
Translates to: VYMVQEWGLLSASSVKKLAAGSP*SGTRHS
Trigger: ACTATGGCGAGTCCCACTTCACGGTGAACCAGCAGC...AAGCTTCTTCACACTGGAGGCAGAAAGCAGACCCCACTCCTGCACCATGTAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR TCA 90 bp GTTTACATGGTGCAGGAGTGGGGTCTGCTTTCTGCCTCCAGTGTGAAGAAGCTTTCGTGGCTGAGGAGTTaGGCACTCTGTCCAGAGGAC +
Preference number: 4 (lower is better)
Translates to: VYMVQEWGLLSASSVKKLSWLRS*ALCPED
Trigger: GTCCTCTGGACAGAGTGCTCAACTCCTCAGCCACGA...AAGCTTCTTCACACTGGAGGCAGAAAGCAGACCCCACTCCTGCACCATGTAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR GCA 90 bp GGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCGACGCCAGCAGTGTGTaGAGAATCCTTTGTTTCACT +
Preference number: 4 (lower is better)
Translates to: GNPPQLAHVPNILTVCSPDASSV*RILCFT
Trigger: AGTGAAACAAAGGATTCTGCACACACTGCTGGCGTC...GGGACTGCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp AAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCCTTGTCATCCAGCTCTaGGACAGAGGCACACAGGTC +
Preference number: 4 (lower is better)
Translates to: KTGNPPQLAHVPNILTVCLVIQL*DRGTQV
Trigger: GACCTGTGTGCCTCTGTCGCAGAGCTGGATGACAAG...GCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp CACAACAGAAACAAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATAAGCGCAGCCGCTCCATaGGGAAGAGGAAGGCAATGG +
Preference number: 4 (lower is better)
Translates to: HNRNKTGNPPQLAHVPNISAAAP*GRGRQW
Trigger: CCATTGCCTTCCTCTTCCGCATGGAGCGGCTGCGCT...TATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTTGTTTCTGTTGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp AGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGTAAATCCTGGGATGTGCGTGTaGGGGTACGGGAACGCAGGC +
Preference number: 4 (lower is better)
Translates to: SLSFSGPKTTVDNISQVNPGMCV*GYGNAG
Trigger: GCCTGCGTTCCCGTACCCTCACACGCACATCCCAGG...ATTTACTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp GCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCAGACCCCATCAAACACAGGAAGAACTGATGCCTTaGCATCTGCTGTCTCCTGGG +
Preference number: 4 (lower is better)
Translates to: AHVPNILTVCSPRPHQTQEELMP*HLLSPG
Trigger: CCCAGGAGACAGCAGATGTCAAGGCATCAGTTCTTC...CTGTGTTTGATGGGGTCTGGGACTGCACACTGTCAGTATATTAGGCACGTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp CACAACAGAAACAAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACCGCCCAGCTGTGCCTaGTGCAGATTTCCGAAGACA +
Preference number: 4 (lower is better)
Translates to: HNRNKTGNPPQLAHVPNIPPSCA*CRFPKT
Trigger: TGTCTTCGGAAATCTGCATCAGGCACAGCTGGGCGG...TATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTTGTTTCTGTTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp CATGGTGCAGGAGTGGGGTCTGCTTTCTGCCTCCAGTGTGAAGAAGCTTCCAGCATCCTGAAGTCCTGGTaGAGGAGCTGGCAGTTTAAT +
Preference number: 4 (lower is better)
Translates to: HGAGVGSAFCLQCEEASSILKSW*RSWQFN
Trigger: ATTAAACTGCCAGCTCCTTCACCAGGACTTCAGGAT...GCTGGAAGCTTCTTCACACTGGAGGCAGAAAGCAGACCCCACTCCTGCACCATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR TCA 90 bp CACAACAGAAACAAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATAGCTGCTGGTTCACCGTaGAGTGGGACTCGCCATAGT +
Preference number: 4 (lower is better)
Translates to: HNRNKTGNPPQLAHVPNIAAGSP*SGTRHS
Trigger: ACTATGGCGAGTCCCACTTCACGGTGAACCAGCAGC...TATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTTGTTTCTGTTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp GCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCAGACCCCATCAAACACAGTGCGGGTGTAGAGCATaGGCAGACGCACAAAGTTCA +
Preference number: 4 (lower is better)
Translates to: AHVPNILTVCSPRPHQTQCGCRA*ADAQSS
Trigger: TGAACTTTGTGCGTCTGCTCATGCTCTACACCCGCA...CTGTGTTTGATGGGGTCTGGGACTGCACACTGTCAGTATATTAGGCACGTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp AAGCATCACAGCAGTAACCACGGAACTCCTCTGGGCTCCAGTCTGAGTTTACATTACGCACTTCCACACTaGTCCGGCTCTTCAGGGCGT +
Preference number: 4 (lower is better)
Translates to: KHHSSNHGTPLGSSLSLHYALPH*SGSSGR
Trigger: ACGCCCTGAAGAGCCGGAGCAGTGTGGAAGTGCGTA...ATGTAAACTCAGACTGGAGCCCAGAGGAGTTCCGTGGTTACTGCTGTGATGCTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR GCA 90 bp TCCCAAGTAAATACACACACACACACACACACACACACACACACACACACCCCAAGCGCAGCCGCTCCATaGGGAAGAGGAAGGCAATGG +
Preference number: 4 (lower is better)
Translates to: SQVNTHTHTHTHTHTHTPSAAAP*GRGRQW
Trigger: CCATTGCCTTCCTCTTCCGCATGGAGCGGCTGCGCT...TGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTACTTGGGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp AAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCATGAGGACCTCCATCTaGACCAGCCTGGCATTAGTG +
Preference number: 4 (lower is better)
Translates to: KTGNPPQLAHVPNILTVCMRTSI*TSLALV
Trigger: CACTAATGCCAGGCTGGTGCAGATGGAGGTCCTCAT...GCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp AAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCACATCTGCTGTCTCCTaGGATGTGCGTGTGAGGGTA +
Preference number: 4 (lower is better)
Translates to: KTGNPPQLAHVPNILTVCTSAVS*DVRVRV
Trigger: TACCCTCACACGCACATCCCAGGAGACAGCAGATGT...GCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp GGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCAGACTCTCCAGTCTCTaGGAGATATGGGATATGTCA +
Preference number: 4 (lower is better)
Translates to: GNPPQLAHVPNILTVCSPRLSSL*EIWDMS
Trigger: TGACATATCCCATATCTCCCAGAGACTGGAGAGTCT...GGGACTGCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp GCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCAGACCCCATCAAACACAGCGAGAGGTTCAAAAGTaGTGGCTGCGCTCAGACTCT +
Preference number: 4 (lower is better)
Translates to: AHVPNILTVCSPRPHQTQREVQK*WLRSDS
Trigger: AGAGTCTGAGCGCAGCCACCACTTTTGAACCTCTCG...CTGTGTTTGATGGGGTCTGGGACTGCACACTGTCAGTATATTAGGCACGTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp GCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCAGACCCCATCAAACACAGCTCGGCTCACTTTCTTaGGTGAAGTCAAGGGCATCC +
Preference number: 4 (lower is better)
Translates to: AHVPNILTVCSPRPHQTQLGSLS*VKSRAS
Trigger: GGATGCCCTTGACTTCACCCAAGAAAGTGAGCCGAG...CTGTGTTTGATGGGGTCTGGGACTGCACACTGTCAGTATATTAGGCACGTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp GCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCAGACCCCATCAAACACAGTTAAATTCCCCAAGCTaGTGCTGGGCTCGACTGACG +
Preference number: 4 (lower is better)
Translates to: AHVPNILTVCSPRPHQTQLNSPS*CWARLT
Trigger: CGTCAGTCGAGCCCAGCACCAGCTTGGGGAATTTAA...CTGTGTTTGATGGGGTCTGGGACTGCACACTGTCAGTATATTAGGCACGTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp TTACACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACAGCCACATGGACAGCATaGCAGCGCAGCCGCTCCATG +
Preference number: 4 (lower is better)
Translates to: LHTYVASHSLAPKQLWTTATWTA*QRSRSM
Trigger: CATGGAGCGGCTGCGCTGCCATGCTGTCCATGTGGC...TGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTGTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp GCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCAGACCCCATCAAACACAGCTGGAGGGCTTCTCTTaGGTCCGTGGACTCAAACTT +
Preference number: 4 (lower is better)
Translates to: AHVPNILTVCSPRPHQTQLEGFS*VRGLKL
Trigger: AAGTTTGAGTCCACGGACCCAAGAGAAGCCCTCCAG...CTGTGTTTGATGGGGTCTGGGACTGCACACTGTCAGTATATTAGGCACGTGGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp GTTTACATGGTGCAGGAGTGGGGTCTGCTTTCTGCCTCCAGTGTGAAGAAGCTTTCTACCTCTCCATCCTaGAGTCCTGGTGAAGGAGCT +
Preference number: 4 (lower is better)
Translates to: VYMVQEWGLLSASSVKKLSTSPS*SPGEGA
Trigger: AGCTCCTTCACCAGGACTTCAGGATGGAGAGGTAGA...AAGCTTCTTCACACTGGAGGCAGAAAGCAGACCCCACTCCTGCACCATGTAAAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR TCA 90 bp AAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCTTTGCACTTATTCCCTaGGCTCTGTACCTCTCCGCA +
Preference number: 4 (lower is better)
Translates to: KTGNPPQLAHVPNILTVCFALIP*ALYLSA
Trigger: TGCGGAGAGGTACAGAGCTCAGGGAATAAGTGCAAA...GCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp AAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCGTGGAAGCTCAGAGATaGCTTCAGTCTCAGCAGCAA +
Preference number: 4 (lower is better)
Translates to: KTGNPPQLAHVPNILTVCVEAQR*LQSQQQ
Trigger: TTGCTGCTGAGACTGAAGGCATCTCTGAGCTTCCAC...GCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp AAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCTTCAAAAGTGGTGGCTaGGCTCAGACTCTCCAGTCT +
Preference number: 4 (lower is better)
Translates to: KTGNPPQLAHVPNILTVCFKSGG*AQTLQS
Trigger: AGACTGGAGAGTCTGAGCGCAGCCACCACTTTTGAA...GCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp GCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCAGACCCCATCAAACACAGTTCAAAAGTGGTGGCTaGGCTCAGACTCTCCAGTCT +
Preference number: 4 (lower is better)
Translates to: AHVPNILTVCSPRPHQTQFKSGG*AQTLQS
Trigger: AGACTGGAGAGTCTGAGCGCAGCCACCACTTTTGAA...CTGTGTTTGATGGGGTCTGGGACTGCACACTGTCAGTATATTAGGCACGTGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp CCAGATTTACACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGTACGCACTTCCACACTaGTCCGGCTCTTCAGGGCGT +
Preference number: 4 (lower is better)
Translates to: PDLHTYVASHSLAPKQLWYALPH*SGSSGR
Trigger: ACGCCCTGAAGAGCCGGAGCAGTGTGGAAGTGCGTA...CCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTGTAAATCTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp GCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCAGACCCCATCAAACACAGGGCAGCTTCAAACTGTaGAGTCAGGAACAGCACTTG +
Preference number: 4 (lower is better)
Translates to: AHVPNILTVCSPRPHQTQGSFKL*SQEQHL
Trigger: CAAGTGCTGTTCCTGACTGCACAGTTTGAAGCTGCC...CTGTGTTTGATGGGGTCTGGGACTGCACACTGTCAGTATATTAGGCACGTGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp CACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTAGCGCAGCCGCTCCATaGGGAAGAGGAAGGCAATGG +
Preference number: 4 (lower is better)
Translates to: HTYVASHSLAPKQLWTTFSAAAP*GRGRQW
Trigger: CCATTGCCTTCCTCTTCCGCATGGAGCGGCTGCGCT...AAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp GGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCGTCATAAAGCTTCGCTaGCTCTTCAAACAGTCCTTT +
Preference number: 4 (lower is better)
Translates to: GNPPQLAHVPNILTVCSPVIKLR*LFKQSF
Trigger: AAAGGACTGTTTGAAGAGGCAGCGAAGCTTTATGAC...GGGACTGCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp AAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCGGAAGAGGAAGGCAATaGCAGCTTCAAACTGTGCAG +
Preference number: 4 (lower is better)
Translates to: KTGNPPQLAHVPNILTVCGRGRQ*QLQTVQ
Trigger: CTGCACAGTTTGAAGCTGCCATTGCCTTCCTCTTCC...GCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp AAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCTGTACCTCTCCGCAATaGAGAGGGCCATGTTCTTCA +
Preference number: 4 (lower is better)
Translates to: KTGNPPQLAHVPNILTVCCTSPQ*RGPCSS
Trigger: TGAAGAACATGGCCCTCTCCATTGCGGAGAGGTACA...GCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp AAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCATCCCAAGGCTTGCTTaGCAAAGTCCATACGCACTT +
Preference number: 4 (lower is better)
Translates to: KTGNPPQLAHVPNILTVCIPRLA*QSPYAL
Trigger: AAGTGCGTATGGACTTTGTCAAGCAAGCCTTGGGAT...GCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp GCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCAGACCCCATCAAACACAGATCCTGAAGTCCTGGTaGAGGAGCTGGCAGTTTAAT +
Preference number: 4 (lower is better)
Translates to: AHVPNILTVCSPRPHQTQILKSW*RSWQFN
Trigger: ATTAAACTGCCAGCTCCTTCACCAGGACTTCAGGAT...CTGTGTTTGATGGGGTCTGGGACTGCACACTGTCAGTATATTAGGCACGTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp CACAACAGAAACAAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATATCTACCTCTCCATCCTaGAGTCCTGGTGAAGGAGCT +
Preference number: 4 (lower is better)
Translates to: HNRNKTGNPPQLAHVPNISTSPS*SPGEGA
Trigger: AGCTCCTTCACCAGGACTTCAGGATGGAGAGGTAGA...TATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTTGTTTCTGTTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp CACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTTCGTGGCTGAGGAGTTaGGCACTCTGTCCAGAGGAC +
Preference number: 4 (lower is better)
Translates to: HTYVASHSLAPKQLWTTFSWLRS*ALCPED
Trigger: GTCCTCTGGACAGAGTGCTCAACTCCTCAGCCACGA...AAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp GCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCAGACCCCATCAAACACAGGGCGAGAAGAACTTCTaGGAGGTTGTGTCTGATTTC +
Preference number: 4 (lower is better)
Translates to: AHVPNILTVCSPRPHQTQGEKNF*EVVSDF
Trigger: GAAATCAGACACAACCTCTCAGAAGTTCTTCTCGCC...CTGTGTTTGATGGGGTCTGGGACTGCACACTGTCAGTATATTAGGCACGTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp AAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCGGCGAGAAGAACTTCTaGGAGGTTGTGTCTGATTTC +
Preference number: 4 (lower is better)
Translates to: KTGNPPQLAHVPNILTVCGEKNF*EVVSDF
Trigger: GAAATCAGACACAACCTCTCAGAAGTTCTTCTCGCC...GCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp GATTTACACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAAGTCACGGTCTTCAATaGCTCGCTGGGGCCTGGTTG +
Preference number: 4 (lower is better)
Translates to: DLHTYVASHSLAPKQLWTSHGLQ*LAGAWL
Trigger: CAACCAGGCCCCAGCGAGTCATTGAAGACCGTGACT...TGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTGTAAATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp TTACACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACAAGTCACGGTCTTCAATaGCTCGCTGGGGCCTGGTTG +
Preference number: 4 (lower is better)
Translates to: LHTYVASHSLAPKQLWTTSHGLQ*LAGAWL
Trigger: CAACCAGGCCCCAGCGAGTCATTGAAGACCGTGACT...TGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTGTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp GCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCAGACCCCATCAAACACAGGACGCCAGCAGTGTGTaGAGAATCCTTTGTTTCACT +
Preference number: 4 (lower is better)
Translates to: AHVPNILTVCSPRPHQTQDASSV*RILCFT
Trigger: AGTGAAACAAAGGATTCTGCACACACTGCTGGCGTC...CTGTGTTTGATGGGGTCTGGGACTGCACACTGTCAGTATATTAGGCACGTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp CCAGATTTACACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGCTTGTCATCCAGCTCTaGGACAGAGGCACACAGGTC +
Preference number: 4 (lower is better)
Translates to: PDLHTYVASHSLAPKQLWLVIQL*DRGTQV
Trigger: GACCTGTGTGCCTCTGTCGCAGAGCTGGATGACAAG...CCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTGTAAATCTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp AAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCCCCACATGTCAGAAATaGTCTTGTCATCCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: KTGNPPQLAHVPNILTVCPTCQK*SCHPAL
Trigger: CAGAGCTGGATGACAAGAGCATTTCTGACATGTGGG...GCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp CACAACAGAAACAAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATAATGAGGACCTCCATCTaGACCAGCCTGGCATTAGTG +
Preference number: 4 (lower is better)
Translates to: HNRNKTGNPPQLAHVPNIMRTSI*TSLALV
Trigger: CACTAATGCCAGGCTGGTGCAGATGGAGGTCCTCAT...TATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTTGTTTCTGTTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp GCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCAGACCCCATCAAACACAGCGCTCACCAGCTTGCTaGATCTCCTGTAAATTTCGT +
Preference number: 4 (lower is better)
Translates to: AHVPNILTVCSPRPHQTQRSPAC*ISCKFR
Trigger: ACGAAATTTACAGGAGATCCAGCAAGCTGGTGAGCG...CTGTGTTTGATGGGGTCTGGGACTGCACACTGTCAGTATATTAGGCACGTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp CACAACAGAAACAAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATAGAGGTTCAAAAGTGGTaGCTGCGCTCAGACTCTCCA +
Preference number: 4 (lower is better)
Translates to: HNRNKTGNPPQLAHVPNIEVQKW*LRSDSP
Trigger: TGGAGAGTCTGAGCGCAGCCACCACTTTTGAACCTC...TATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTTGTTTCTGTTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp CACAACAGAAACAAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTCGGCTCACTTTCTTaGGTGAAGTCAAGGGCATCC +
Preference number: 4 (lower is better)
Translates to: HNRNKTGNPPQLAHVPNILGSLS*VKSRAS
Trigger: GGATGCCCTTGACTTCACCCAAGAAAGTGAGCCGAG...TATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTTGTTTCTGTTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp GTTTACATGGTGCAGGAGTGGGGTCTGCTTTCTGCCTCCAGTGTGAAGAAGCTTTTCTTTGTTAGACTGTaGGGCGCTGATCTGTGGGAC +
Preference number: 4 (lower is better)
Translates to: VYMVQEWGLLSASSVKKLFFVRL*GADLWD
Trigger: GTCCCACAGATCAGCGCCCCACAGTCTAACAAAGAA...AAGCTTCTTCACACTGGAGGCAGAAAGCAGACCCCACTCCTGCACCATGTAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR TCA 90 bp TATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGAGCTGTTCAGCTTGCTaGAGGAGCTCACCAAACCCC +
Preference number: 4 (lower is better)
Translates to: YVASHSLAPKQLWTTFPKSCSAC*RSSPNP
Trigger: GGGGTTTGGTGAGCTCCTTCAGCAAGCTGAACAGCT...CTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp CACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTAGCTGTTCAGCTTGCTaGAGGAGCTCACCAAACCCC +
Preference number: 4 (lower is better)
Translates to: HTYVASHSLAPKQLWTTFSCSAC*RSSPNP
Trigger: GGGGTTTGGTGAGCTCCTTCAGCAAGCTGAACAGCT...AAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp CCAGATTTACACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGTCTACCTCTCCATCCTaGAGTCCTGGTGAAGGAGCT +
Preference number: 4 (lower is better)
Translates to: PDLHTYVASHSLAPKQLWSTSPS*SPGEGA
Trigger: AGCTCCTTCACCAGGACTTCAGGATGGAGAGGTAGA...CCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTGTAAATCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp TCCCAAGTAAATACACACACACACACACACACACACACACACACACACACCCCACTGCTTCTGGAACTGTaGGAGAGTGAGCCTGTCTTG +
Preference number: 4 (lower is better)
Translates to: SQVNTHTHTHTHTHTHTPLLLEL*ESEPVL
Trigger: CAAGACAGGCTCACTCTCTCACAGTTCCAGAAGCAG...TGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTACTTGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp TCCCAAGTAAATACACACACACACACACACACACACACACACACACACACCCCATGCGGGTGTAGAGCATaGGCAGACGCACAAAGTTCA +
Preference number: 4 (lower is better)
Translates to: SQVNTHTHTHTHTHTHTPCGCRA*ADAQSS
Trigger: TGAACTTTGTGCGTCTGCTCATGCTCTACACCCGCA...TGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTACTTGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp AAGCATCACAGCAGTAACCACGGAACTCCTCTGGGCTCCAGTCTGAGTTTACATCATAGGCCATCTCAATaGTATCCAGAGAGCTTCGCC +
Preference number: 4 (lower is better)
Translates to: KHHSSNHGTPLGSSLSLHHRPSQ*YPESFA
Trigger: GGCGAAGCTCTCTGGATAGCATTGAGATGGCCTATG...ATGTAAACTCAGACTGGAGCCCAGAGGAGTTCCGTGGTTACTGCTGTGATGCTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR GCA 90 bp AAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCGGTCTCCACAGCGCATaGAGTAATAAATTAATGCCC +
Preference number: 4 (lower is better)
Translates to: KTGNPPQLAHVPNILTVCGLHSA*SNKLMP
Trigger: GGGCATTAATTTATTACTGCATGCGCTGTGGAGACC...GCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp CACAACAGAAACAAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATAGGCAGCTTCAAACTGTaGAGTCAGGAACAGCACTTG +
Preference number: 4 (lower is better)
Translates to: HNRNKTGNPPQLAHVPNIGSFKL*SQEQHL
Trigger: CAAGTGCTGTTCCTGACTGCACAGTTTGAAGCTGCC...TATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTTGTTTCTGTTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp CCAGATTTACACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGCTCGGCTCACTTTCTTaGGTGAAGTCAAGGGCATCC +
Preference number: 4 (lower is better)
Translates to: PDLHTYVASHSLAPKQLWLGSLS*VKSRAS
Trigger: GGATGCCCTTGACTTCACCCAAGAAAGTGAGCCGAG...CCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTGTAAATCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp CACAACAGAAACAAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATATCTAGCAGCTGCTTCTaGAACTGTGAGAGAGTGAGC +
Preference number: 4 (lower is better)
Translates to: HNRNKTGNPPQLAHVPNISSSCF*NCERVS
Trigger: GCTCACTCTCTCACAGTTCCAGAAGCAGCTGCTAGA...TATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTTGTTTCTGTTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp CACAACAGAAACAAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATAGGAAGAGGAAGGCAATaGCAGCTTCAAACTGTGCAG +
Preference number: 4 (lower is better)
Translates to: HNRNKTGNPPQLAHVPNIGRGRQ*QLQTVQ
Trigger: CTGCACAGTTTGAAGCTGCCATTGCCTTCCTCTTCC...TATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTTGTTTCTGTTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp TATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGGAAGAACTGATGCCTTaGCATCTGCTGTCTCCTGGG +
Preference number: 4 (lower is better)
Translates to: YVASHSLAPKQLWTTFPKEELMP*HLLSPG
Trigger: CCCAGGAGACAGCAGATGTCAAGGCATCAGTTCTTC...CTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp CACAACAGAAACAAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATAAGCATTGATTCTCGATaGTACTCCTCAGCCATGCCA +
Preference number: 4 (lower is better)
Translates to: HNRNKTGNPPQLAHVPNISIDSR*YSSAMP
Trigger: TGGCATGGCTGAGGAGTATCATCGAGAATCAATGCT...TATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTTGTTTCTGTTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp CACAACAGAAACAAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATAATCCCAAGGCTTGCTTaGCAAAGTCCATACGCACTT +
Preference number: 4 (lower is better)
Translates to: HNRNKTGNPPQLAHVPNIIPRLA*QSPYAL
Trigger: AAGTGCGTATGGACTTTGTCAAGCAAGCCTTGGGAT...TATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTTGTTTCTGTTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp TTTAAAGTCACATTGTCCAGATTTACACACCTATGTAGCCTCTCATTCTCTGGCGGTGCTGGGCTCGACTaGCGACTTGTGATGCGGCAA +
Preference number: 4 (lower is better)
Translates to: FKVTLSRFTHLCSLSFSGGAGLD*RLVMRQ
Trigger: TTGCCGCATCACAAGTCGTCAGTCGAGCCCAGCACC...GCCAGAGAATGAGAGGCTACATAGGTGTGTAAATCTGGACAATGTGACTTTAAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp CACAACAGAAACAAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATATCGGCTACTTCACTCTaGTTGTCGGTGATATCGCAT +
Preference number: 4 (lower is better)
Translates to: HNRNKTGNPPQLAHVPNISATSL*LSVISH
Trigger: ATGCGATATCACCGACAATCAGAGTGAAGTAGCCGA...TATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTTGTTTCTGTTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp CCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGTAAATACGGAACTGTGAGAGAGTaGGCCTGTCTTGTGGTGAGC +
Preference number: 4 (lower is better)
Translates to: PLILWPQNNCGQHFPSKYGTVRE*ACLVVS
Trigger: GCTCACCACAAGACAGGCTCACTCTCTCACAGTTCC...GTATTTACTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp ATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGTAAATACACACACGCTGCTGGTTCACCGTaGAGTGGGACTCGCCATAGT +
Preference number: 4 (lower is better)
Translates to: ILWPQNNCGQHFPSKYTHAAGSP*SGTRHS
Trigger: ACTATGGCGAGTCCCACTTCACGGTGAACCAGCAGC...GTGTGTGTATTTACTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp ATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGTAAATACACACACTCGTGGCTGAGGAGTTaGGCACTCTGTCCAGAGGAC +
Preference number: 4 (lower is better)
Translates to: ILWPQNNCGQHFPSKYTHSWLRS*ALCPED
Trigger: GTCCTCTGGACAGAGTGCTCAACTCCTCAGCCACGA...GTGTGTGTATTTACTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp AAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCTGTCTTTCTCATCCCTaGGGAAGTAAAAGTACTGGA +
Preference number: 4 (lower is better)
Translates to: KTGNPPQLAHVPNILTVCCLSHP*GSKSTG
Trigger: TCCAGTACTTTTACTTCCTCAGGGATGAGAAAGACA...GCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp TCCCAAGTAAATACACACACACACACACACACACACACACACACACACACCCCATTTGCACTTATTCCCTaGGCTCTGTACCTCTCCGCA +
Preference number: 4 (lower is better)
Translates to: SQVNTHTHTHTHTHTHTPFALIP*ALYLSA
Trigger: TGCGGAGAGGTACAGAGCTCAGGGAATAAGTGCAAA...TGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTACTTGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp CACCTTTGTTTTGTTATTGAAATCAGGCAATACTGGGTTAAGGTGGGAAGACCCAGTCACGGTCTTCAATaGCTCGCTGGGGCCTGGTTG +
Preference number: 4 (lower is better)
Translates to: HLCFVIEIRQYWVKVGRPSHGLQ*LAGAWL
Trigger: CAACCAGGCCCCAGCGAGTCATTGAAGACCGTGACT...GGGTCTTCCCACCTTAACCCAGTATTGCCTGATTTCAATAACAAAACAAAGGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR GCA 90 bp CACAACAGAAACAAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATAAGGCGCTCACCAGCTTaGTGGATCTCCTGTAAATTT +
Preference number: 4 (lower is better)
Translates to: HNRNKTGNPPQLAHVPNIRRSPA*WISCKF
Trigger: AAATTTACAGGAGATCCAGCAAGCTGGTGAGCGCCT...TATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTTGTTTCTGTTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp CACAACAGAAACAAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACCCACATGTCAGAAATaGTCTTGTCATCCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: HNRNKTGNPPQLAHVPNIPTCQK*SCHPAL
Trigger: CAGAGCTGGATGACAAGAGCATTTCTGACATGTGGG...TATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTTGTTTCTGTTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp AAGCATCACAGCAGTAACCACGGAACTCCTCTGGGCTCCAGTCTGAGTTTACATCCCACATGTCAGAAATaGTCTTGTCATCCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: KHHSSNHGTPLGSSLSLHPTCQK*SCHPAL
Trigger: CAGAGCTGGATGACAAGAGCATTTCTGACATGTGGG...ATGTAAACTCAGACTGGAGCCCAGAGGAGTTCCGTGGTTACTGCTGTGATGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR GCA 90 bp ATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGTAAATACACACACTACGCACTTCCACACTaGTCCGGCTCTTCAGGGCGT +
Preference number: 4 (lower is better)
Translates to: ILWPQNNCGQHFPSKYTHYALPH*SGSSGR
Trigger: ACGCCCTGAAGAGCCGGAGCAGTGTGGAAGTGCGTA...GTGTGTGTATTTACTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp CCAAAGCATCACAGCAGTAACCACGGAACTCCTCTGGGCTCCAGTCTGAGTTTAGGTCTCCACAGCGCATaGAGTAATAAATTAATGCCC +
Preference number: 4 (lower is better)
Translates to: PKHHSSNHGTPLGSSLSLGLHSA*SNKLMP
Trigger: GGGCATTAATTTATTACTGCATGCGCTGTGGAGACC...TAAACTCAGACTGGAGCCCAGAGGAGTTCCGTGGTTACTGCTGTGATGCTTTGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR GCA 90 bp TTACACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACAATGAGGACCTCCATCTaGACCAGCCTGGCATTAGTG +
Preference number: 4 (lower is better)
Translates to: LHTYVASHSLAPKQLWTTMRTSI*TSLALV
Trigger: CACTAATGCCAGGCTGGTGCAGATGGAGGTCCTCAT...TGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp GATTTACACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATCTGCTGTCTCCTaGGATGTGCGTGTGAGGGTA +
Preference number: 4 (lower is better)
Translates to: DLHTYVASHSLAPKQLWTTSAVS*DVRVRV
Trigger: TACCCTCACACGCACATCCCAGGAGACAGCAGATGT...TGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTGTAAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp TATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGACATCTGCTGTCTCCTaGGATGTGCGTGTGAGGGTA +
Preference number: 4 (lower is better)
Translates to: YVASHSLAPKQLWTTFPKTSAVS*DVRVRV
Trigger: TACCCTCACACGCACATCCCAGGAGACAGCAGATGT...CTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp GATTTACACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAGAGGTTCAAAAGTGGTaGCTGCGCTCAGACTCTCCA +
Preference number: 4 (lower is better)
Translates to: DLHTYVASHSLAPKQLWTEVQKW*LRSDSP
Trigger: TGGAGAGTCTGAGCGCAGCCACCACTTTTGAACCTC...TGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTGTAAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp GATTTACACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACACGAGAGGTTCAAAAGTaGTGGCTGCGCTCAGACTCT +
Preference number: 4 (lower is better)
Translates to: DLHTYVASHSLAPKQLWTREVQK*WLRSDS
Trigger: AGAGTCTGAGCGCAGCCACCACTTTTGAACCTCTCG...TGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTGTAAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp TTACACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACAAATGCCCAGACAGGATaGCCTTCTACCTCTCCATCC +
Preference number: 4 (lower is better)
Translates to: LHTYVASHSLAPKQLWTTNAQTG*PSTSPS
Trigger: GGATGGAGAGGTAGAAGGCCATCCTGTCTGGGCATT...TGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp CGGAACTCCTCTGGGCTCCAGTCTGAGTTTACATGGTGCAGGAGTGGGGTCTGCTTTGTTTTCTGTAGCTaGAGACAATCTTCTATCCTT +
Preference number: 4 (lower is better)
Translates to: RNSSGLQSEFTWCRSGVCFVFCS*RQSSIL
Trigger: AAGGATAGAAGATTGTCTCCAGCTACAGAAAACAAA...GCAGACCCCACTCCTGCACCATGTAAACTCAGACTGGAGCCCAGAGGAGTTCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR CCA 90 bp GATTTACACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACACTGGAGGGCTTCTCTTaGGTCCGTGGACTCAAACTT +
Preference number: 4 (lower is better)
Translates to: DLHTYVASHSLAPKQLWTLEGFS*VRGLKL
Trigger: AAGTTTGAGTCCACGGACCCAAGAGAAGCCCTCCAG...TGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTGTAAATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp TCCCAAGTAAATACACACACACACACACACACACACACACACACACACACCCCATGTACCTCTCCGCAATaGAGAGGGCCATGTTCTTCA +
Preference number: 4 (lower is better)
Translates to: SQVNTHTHTHTHTHTHTPCTSPQ*RGPCSS
Trigger: TGAAGAACATGGCCCTCTCCATTGCGGAGAGGTACA...TGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTACTTGGGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp TCCCAAGTAAATACACACACACACACACACACACACACACACACACACACCCCAAGCATTGATTCTCGATaGTACTCCTCAGCCATGCCA +
Preference number: 4 (lower is better)
Translates to: SQVNTHTHTHTHTHTHTPSIDSR*YSSAMP
Trigger: TGGCATGGCTGAGGAGTATCATCGAGAATCAATGCT...TGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTACTTGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp CCAGATTTACACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGATCCCAAGGCTTGCTTaGCAAAGTCCATACGCACTT +
Preference number: 4 (lower is better)
Translates to: PDLHTYVASHSLAPKQLWIPRLA*QSPYAL
Trigger: AAGTGCGTATGGACTTTGTCAAGCAAGCCTTGGGAT...CCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTGTAAATCTGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp TTTAAAGTCACATTGTCCAGATTTACACACCTATGTAGCCTCTCATTCTCTGGCGAGCCTGTCTTGTGGTaGGCTGGTGCCGTCATCATC +
Preference number: 4 (lower is better)
Translates to: FKVTLSRFTHLCSLSFSGEPVLW*AGAVII
Trigger: GATGATGACGGCACCAGCTCACCACAAGACAGGCTC...GCCAGAGAATGAGAGGCTACATAGGTGTGTAAATCTGGACAATGTGACTTTAAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp CCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGTAAATACCTGCTTCTGGAACTGTaGGAGAGTGAGCCTGTCTTG +
Preference number: 4 (lower is better)
Translates to: PLILWPQNNCGQHFPSKYLLLEL*ESEPVL
Trigger: CAAGACAGGCTCACTCTCTCACAGTTCCAGAAGCAG...GTATTTACTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp AGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGTAAATCTGGGGCCTGGTTGCTaGAGATGGACTTGTTCCTTT +
Preference number: 4 (lower is better)
Translates to: SLSFSGPKTTVDNISQVNLGPGC*RWTCSF
Trigger: AAAGGAACAAGTCCATCTTCAGCAACCAGGCCCCAG...ATTTACTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp TTACACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTCAAAAGTGGTGGCTaGGCTCAGACTCTCCAGTCT +
Preference number: 4 (lower is better)
Translates to: LHTYVASHSLAPKQLWTTFKSGG*AQTLQS
Trigger: AGACTGGAGAGTCTGAGCGCAGCCACCACTTTTGAA...TGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTGTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp TCCCAAGTAAATACACACACACACACACACACACACACACACACACACACCCCAGACGCCAGCAGTGTGTaGAGAATCCTTTGTTTCACT +
Preference number: 4 (lower is better)
Translates to: SQVNTHTHTHTHTHTHTPDASSV*RILCFT
Trigger: AGTGAAACAAAGGATTCTGCACACACTGCTGGCGTC...TGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTACTTGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp TTACACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACACATAGGCCATCTCAATaGTATCCAGAGAGCTTCGCC +
Preference number: 4 (lower is better)
Translates to: LHTYVASHSLAPKQLWTTHRPSQ*YPESFA
Trigger: GGCGAAGCTCTCTGGATAGCATTGAGATGGCCTATG...TGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTGTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp CACAACAGAAACAAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATAGGTCTCCACAGCGCATaGAGTAATAAATTAATGCCC +
Preference number: 4 (lower is better)
Translates to: HNRNKTGNPPQLAHVPNIGLHSA*SNKLMP
Trigger: GGGCATTAATTTATTACTGCATGCGCTGTGGAGACC...TATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTTGTTTCTGTTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp CACAACAGAAACAAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATAAGTCTCTGGGAGATATaGGATATGTCAAGTCCCCTT +
Preference number: 4 (lower is better)
Translates to: HNRNKTGNPPQLAHVPNISLWEI*DMSSPL
Trigger: AAGGGGACTTGACATATCCCATATCTCCCAGAGACT...TATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTTGTTTCTGTTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp AAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCTCATTTGTTTTACCATaGCCCACATGTCAGAAATGC +
Preference number: 4 (lower is better)
Translates to: KTGNPPQLAHVPNILTVCSFVLP*PTCQKC
Trigger: GCATTTCTGACATGTGGGCCATGGTAAAACAAATGA...GCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp AGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGTAAATAATGCCCAGACAGGATaGCCTTCTACCTCTCCATCC +
Preference number: 4 (lower is better)
Translates to: SLSFSGPKTTVDNISQVNNAQTG*PSTSPS
Trigger: GGATGGAGAGGTAGAAGGCCATCCTGTCTGGGCATT...ATTTACTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp TCTTTGCTTAAAATATCCCAAAGCATCACAGCAGTAACCACGGAACTCCTCTGGAATGCCCAGACAGGATaGCCTTCTACCTCTCCATCC +
Preference number: 4 (lower is better)
Translates to: SLLKISQSITAVTTELLWNAQTG*PSTSPS
Trigger: GGATGGAGAGGTAGAAGGCCATCCTGTCTGGGCATT...CCAGAGGAGTTCCGTGGTTACTGCTGTGATGCTTTGGGATATTTTAAGCAAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR CCA 90 bp AGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGTAAATTTAAATTCCCCAAGCTaGTGCTGGGCTCGACTGACG +
Preference number: 4 (lower is better)
Translates to: SLSFSGPKTTVDNISQVNLNSPS*CWARLT
Trigger: CGTCAGTCGAGCCCAGCACCAGCTTGGGGAATTTAA...ATTTACTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp CACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTTCTAGCAGCTGCTTCTaGAACTGTGAGAGAGTGAGC +
Preference number: 4 (lower is better)
Translates to: HTYVASHSLAPKQLWTTFSSSCF*NCERVS
Trigger: GCTCACTCTCTCACAGTTCCAGAAGCAGCTGCTAGA...AAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp CACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTGGAAGAGGAAGGCAATaGCAGCTTCAAACTGTGCAG +
Preference number: 4 (lower is better)
Translates to: HTYVASHSLAPKQLWTTFGRGRQ*QLQTVQ
Trigger: CTGCACAGTTTGAAGCTGCCATTGCCTTCCTCTTCC...AAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp TATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGTTCTTTGTTAGACTGTaGGGCGCTGATCTGTGGGAC +
Preference number: 4 (lower is better)
Translates to: YVASHSLAPKQLWTTFPKFFVRL*GADLWD
Trigger: GTCCCACAGATCAGCGCCCCACAGTCTAACAAAGAA...CTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp CACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTTTCTTTGTTAGACTGTaGGGCGCTGATCTGTGGGAC +
Preference number: 4 (lower is better)
Translates to: HTYVASHSLAPKQLWTTFFFVRL*GADLWD
Trigger: GTCCCACAGATCAGCGCCCCACAGTCTAACAAAGAA...AAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp GATTTACACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACATGTACCTCTCCGCAATaGAGAGGGCCATGTTCTTCA +
Preference number: 4 (lower is better)
Translates to: DLHTYVASHSLAPKQLWTCTSPQ*RGPCSS
Trigger: TGAAGAACATGGCCCTCTCCATTGCGGAGAGGTACA...TGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTGTAAATC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp ATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGTAAATACACACACGAAGAACTGATGCCTTaGCATCTGCTGTCTCCTGGG +
Preference number: 4 (lower is better)
Translates to: ILWPQNNCGQHFPSKYTHEELMP*HLLSPG
Trigger: CCCAGGAGACAGCAGATGTCAAGGCATCAGTTCTTC...GTGTGTGTATTTACTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp TTACACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACAATCCTGAAGTCCTGGTaGAGGAGCTGGCAGTTTAAT +
Preference number: 4 (lower is better)
Translates to: LHTYVASHSLAPKQLWTTILKSW*RSWQFN
Trigger: ATTAAACTGCCAGCTCCTTCACCAGGACTTCAGGAT...TGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTGTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp CACAACAGAAACAAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATATGTCTTTCTCATCCCTaGGGAAGTAAAAGTACTGGA +
Preference number: 4 (lower is better)
Translates to: HNRNKTGNPPQLAHVPNICLSHP*GSKSTG
Trigger: TCCAGTACTTTTACTTCCTCAGGGATGAGAAAGACA...TATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTTGTTTCTGTTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp CCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGTAAATACTTTGCACTTATTCCCTaGGCTCTGTACCTCTCCGCA +
Preference number: 4 (lower is better)
Translates to: PLILWPQNNCGQHFPSKYFALIP*ALYLSA
Trigger: TGCGGAGAGGTACAGAGCTCAGGGAATAAGTGCAAA...GTATTTACTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp CACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTGGCGAGAAGAACTTCTaGGAGGTTGTGTCTGATTTC +
Preference number: 4 (lower is better)
Translates to: HTYVASHSLAPKQLWTTFGEKNF*EVVSDF
Trigger: GAAATCAGACACAACCTCTCAGAAGTTCTTCTCGCC...AAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp ATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGTAAATACACACACCTGGGGCCTGGTTGCTaGAGATGGACTTGTTCCTTT +
Preference number: 4 (lower is better)
Translates to: ILWPQNNCGQHFPSKYTHLGPGC*RWTCSF
Trigger: AAAGGAACAAGTCCATCTTCAGCAACCAGGCCCCAG...GTGTGTGTATTTACTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp CCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGTAAATACGTGGAAGCTCAGAGATaGCTTCAGTCTCAGCAGCAA +
Preference number: 4 (lower is better)
Translates to: PLILWPQNNCGQHFPSKYVEAQR*LQSQQQ
Trigger: TTGCTGCTGAGACTGAAGGCATCTCTGAGCTTCCAC...GTATTTACTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp CCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGTAAATACCATAGGCCATCTCAATaGTATCCAGAGAGCTTCGCC +
Preference number: 4 (lower is better)
Translates to: PLILWPQNNCGQHFPSKYHRPSQ*YPESFA
Trigger: GGCGAAGCTCTCTGGATAGCATTGAGATGGCCTATG...GTATTTACTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp TTTAAAGTCACATTGTCCAGATTTACACACCTATGTAGCCTCTCATTCTCTGGCCTTGTCATCCAGCTCTaGGACAGAGGCACACAGGTC +
Preference number: 4 (lower is better)
Translates to: FKVTLSRFTHLCSLSFSGLVIQL*DRGTQV
Trigger: GACCTGTGTGCCTCTGTCGCAGAGCTGGATGACAAG...GCCAGAGAATGAGAGGCTACATAGGTGTGTAAATCTGGACAATGTGACTTTAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp CCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGTAAATACGGCAGCTTCAAACTGTaGAGTCAGGAACAGCACTTG +
Preference number: 4 (lower is better)
Translates to: PLILWPQNNCGQHFPSKYGSFKL*SQEQHL
Trigger: CAAGTGCTGTTCCTGACTGCACAGTTTGAAGCTGCC...GTATTTACTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp CAAGAACCAACACACCTTTGTTTTGTTATTGAAATCAGGCAATACTGGGTTAAGAGCGCAGCCGCTCCATaGGGAAGAGGAAGGCAATGG +
Preference number: 4 (lower is better)
Translates to: QEPTHLCFVIEIRQYWVKSAAAP*GRGRQW
Trigger: CCATTGCCTTCCTCTTCCGCATGGAGCGGCTGCGCT...CTTAACCCAGTATTGCCTGATTTCAATAACAAAACAAAGGTGTGTTGGTTCTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR CCA 90 bp CACAACAGAAACAAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATAATTTCGTTCTACATGTaGAAGCTCAGAGATGCCTTC +
Preference number: 4 (lower is better)
Translates to: HNRNKTGNPPQLAHVPNIISFYM*KLRDAF
Trigger: GAAGGCATCTCTGAGCTTCCACATGTAGAACGAAAT...TATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTTGTTTCTGTTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp TATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGCGCTCACCAGCTTGCTaGATCTCCTGTAAATTTCGT +
Preference number: 4 (lower is better)
Translates to: YVASHSLAPKQLWTTFPKRSPAC*ISCKFR
Trigger: ACGAAATTTACAGGAGATCCAGCAAGCTGGTGAGCG...CTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp TCCCAAGTAAATACACACACACACACACACACACACACACACACACACACCCCAAGTCTCTGGGAGATATaGGATATGTCAAGTCCCCTT +
Preference number: 4 (lower is better)
Translates to: SQVNTHTHTHTHTHTHTPSLWEI*DMSSPL
Trigger: AAGGGGACTTGACATATCCCATATCTCCCAGAGACT...TGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTACTTGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp CCAGATTTACACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGAGTCTCTGGGAGATATaGGATATGTCAAGTCCCCTT +
Preference number: 4 (lower is better)
Translates to: PDLHTYVASHSLAPKQLWSLWEI*DMSSPL
Trigger: AAGGGGACTTGACATATCCCATATCTCCCAGAGACT...CCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTGTAAATCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp GTTTACATGGTGCAGGAGTGGGGTCTGCTTTCTGCCTCCAGTGTGAAGAAGCTTTCATTTGTTTTACCATaGCCCACATGTCAGAAATGC +
Preference number: 4 (lower is better)
Translates to: VYMVQEWGLLSASSVKKLSFVLP*PTCQKC
Trigger: GCATTTCTGACATGTGGGCCATGGTAAAACAAATGA...AAGCTTCTTCACACTGGAGGCAGAAAGCAGACCCCACTCCTGCACCATGTAAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR CCA 90 bp ATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGTAAATACACACACTTAAATTCCCCAAGCTaGTGCTGGGCTCGACTGACG +
Preference number: 4 (lower is better)
Translates to: ILWPQNNCGQHFPSKYTHLNSPS*CWARLT
Trigger: CGTCAGTCGAGCCCAGCACCAGCTTGGGGAATTTAA...GTGTGTGTATTTACTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp CCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGTAAATACTCTAGCAGCTGCTTCTaGAACTGTGAGAGAGTGAGC +
Preference number: 4 (lower is better)
Translates to: PLILWPQNNCGQHFPSKYSSSCF*NCERVS
Trigger: GCTCACTCTCTCACAGTTCCAGAAGCAGCTGCTAGA...GTATTTACTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp CACCTTTGTTTTGTTATTGAAATCAGGCAATACTGGGTTAAGGTGGGAAGACCCCTGGAGGGCTTCTCTTaGGTCCGTGGACTCAAACTT +
Preference number: 4 (lower is better)
Translates to: HLCFVIEIRQYWVKVGRPLEGFS*VRGLKL
Trigger: AAGTTTGAGTCCACGGACCCAAGAGAAGCCCTCCAG...GGGTCTTCCCACCTTAACCCAGTATTGCCTGATTTCAATAACAAAACAAAGGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR TCA 90 bp CCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGTAAATACAGCATTGATTCTCGATaGTACTCCTCAGCCATGCCA +
Preference number: 4 (lower is better)
Translates to: PLILWPQNNCGQHFPSKYSIDSR*YSSAMP
Trigger: TGGCATGGCTGAGGAGTATCATCGAGAATCAATGCT...GTATTTACTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp AGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGTAAATATCCTGAAGTCCTGGTaGAGGAGCTGGCAGTTTAAT +
Preference number: 4 (lower is better)
Translates to: SLSFSGPKTTVDNISQVNILKSW*RSWQFN
Trigger: ATTAAACTGCCAGCTCCTTCACCAGGACTTCAGGAT...ATTTACTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp AGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGTAAATTCGGCTACTTCACTCTaGTTGTCGGTGATATCGCAT +
Preference number: 4 (lower is better)
Translates to: SLSFSGPKTTVDNISQVNSATSL*LSVISH
Trigger: ATGCGATATCACCGACAATCAGAGTGAAGTAGCCGA...ATTTACTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp CCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGTAAATACTCGGCTACTTCACTCTaGTTGTCGGTGATATCGCAT +
Preference number: 4 (lower is better)
Translates to: PLILWPQNNCGQHFPSKYSATSL*LSVISH
Trigger: ATGCGATATCACCGACAATCAGAGTGAAGTAGCCGA...GTATTTACTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp TTTAAAGTCACATTGTCCAGATTTACACACCTATGTAGCCTCTCATTCTCTGGCTGCGGGTGTAGAGCATaGGCAGACGCACAAAGTTCA +
Preference number: 4 (lower is better)
Translates to: FKVTLSRFTHLCSLSFSGCGCRA*ADAQSS
Trigger: TGAACTTTGTGCGTCTGCTCATGCTCTACACCCGCA...GCCAGAGAATGAGAGGCTACATAGGTGTGTAAATCTGGACAATGTGACTTTAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp TCTTTGCTTAAAATATCCCAAAGCATCACAGCAGTAACCACGGAACTCCTCTGGGGCGAGAAGAACTTCTaGGAGGTTGTGTCTGATTTC +
Preference number: 4 (lower is better)
Translates to: SLLKISQSITAVTTELLWGEKNF*EVVSDF
Trigger: GAAATCAGACACAACCTCTCAGAAGTTCTTCTCGCC...CCAGAGGAGTTCCGTGGTTACTGCTGTGATGCTTTGGGATATTTTAAGCAAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR GCA 90 bp AGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGTAAATAGGCGCTCACCAGCTTaGTGGATCTCCTGTAAATTT +
Preference number: 4 (lower is better)
Translates to: SLSFSGPKTTVDNISQVNRRSPA*WISCKF
Trigger: AAATTTACAGGAGATCCAGCAAGCTGGTGAGCGCCT...ATTTACTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp ACTAGAACAGTCAGTTCTGAAATCCAAAGCAAGAACCAACACACCTTTGTTTTGCTTGTCATCCAGCTCTaGGACAGAGGCACACAGGTC +
Preference number: 4 (lower is better)
Translates to: TRTVSSEIQSKNQHTFVLLVIQL*DRGTQV
Trigger: GACCTGTGTGCCTCTGTCGCAGAGCTGGATGACAAG...CAAAACAAAGGTGTGTTGGTTCTTGCTTTGGATTTCAGAACTGACTGTTCTAGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR GCA 90 bp AGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGTAAATCCCACATGTCAGAAATaGTCTTGTCATCCAGCTCTG +
Preference number: 4 (lower is better)
Translates to: SLSFSGPKTTVDNISQVNPTCQK*SCHPAL
Trigger: CAGAGCTGGATGACAAGAGCATTTCTGACATGTGGG...ATTTACTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp CACAACAGAAACAAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATAACAATCTTCTATCCTTaGTGTTCATGTACTCCTGGA +
Preference number: 4 (lower is better)
Translates to: HNRNKTGNPPQLAHVPNITIFYP*CSCTPG
Trigger: TCCAGGAGTACATGAACAGCAAGGATAGAAGATTGT...TATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTTGTTTCTGTTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp CCAGATTTACACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGATTTCGTTCTACATGTaGAAGCTCAGAGATGCCTTC +
Preference number: 4 (lower is better)
Translates to: PDLHTYVASHSLAPKQLWISFYM*KLRDAF
Trigger: GAAGGCATCTCTGAGCTTCCACATGTAGAACGAAAT...CCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTGTAAATCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp TATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGAGACTCTCCAGTCTCTaGGAGATATGGGATATGTCA +
Preference number: 4 (lower is better)
Translates to: YVASHSLAPKQLWTTFPKRLSSL*EIWDMS
Trigger: TGACATATCCCATATCTCCCAGAGACTGGAGAGTCT...CTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp CACAATTCTTTGCTTAAAATATCCCAAAGCATCACAGCAGTAACCACGGAACTCCTCGGCTCACTTTCTTaGGTGAAGTCAAGGGCATCC +
Preference number: 4 (lower is better)
Translates to: HNSLLKISQSITAVTTELLGSLS*VKSRAS
Trigger: GGATGCCCTTGACTTCACCCAAGAAAGTGAGCCGAG...GAGTTCCGTGGTTACTGCTGTGATGCTTTGGGATATTTTAAGCAAAGAATTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR CCA 90 bp CACAACAGAAACAAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATATCATTTGTTTTACCATaGCCCACATGTCAGAAATGC +
Preference number: 4 (lower is better)
Translates to: HNRNKTGNPPQLAHVPNISFVLP*PTCQKC
Trigger: GCATTTCTGACATGTGGGCCATGGTAAAACAAATGA...TATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTTGTTTCTGTTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp GCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCAGACCCCATCAAACACAGTTTGTTTTCTGTAGCTaGAGACAATCTTCTATCCTT +
Preference number: 4 (lower is better)
Translates to: AHVPNILTVCSPRPHQTQFVFCS*RQSSIL
Trigger: AAGGATAGAAGATTGTCTCCAGCTACAGAAAACAAA...CTGTGTTTGATGGGGTCTGGGACTGCACACTGTCAGTATATTAGGCACGTGGGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp CACAATTCTTTGCTTAAAATATCCCAAAGCATCACAGCAGTAACCACGGAACTCCTTCTCTTGGGTCCGTaGACTCAAACTTGCGGGTGT +
Preference number: 4 (lower is better)
Translates to: HNSLLKISQSITAVTTELLLLGP*TQTCGC
Trigger: ACACCCGCAAGTTTGAGTCCACGGACCCAAGAGAAG...GAGTTCCGTGGTTACTGCTGTGATGCTTTGGGATATTTTAAGCAAAGAATTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR CCA 90 bp TTTAAAGTCACATTGTCCAGATTTACACACCTATGTAGCCTCTCATTCTCTGGCCTTCTCTTGGGTCCGTaGACTCAAACTTGCGGGTGT +
Preference number: 4 (lower is better)
Translates to: FKVTLSRFTHLCSLSFSGLLLGP*TQTCGC
Trigger: ACACCCGCAAGTTTGAGTCCACGGACCCAAGAGAAG...GCCAGAGAATGAGAGGCTACATAGGTGTGTAAATCTGGACAATGTGACTTTAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp AATCATTTAAAGTCACATTGTCCAGATTTACACACCTATGTAGCCTCTCATTCTCCGCCCAGCTGTGCCTaGTGCAGATTTCCGAAGACA +
Preference number: 4 (lower is better)
Translates to: NHLKSHCPDLHTYVASHSPPSCA*CRFPKT
Trigger: TGTCTTCGGAAATCTGCATCAGGCACAGCTGGGCGG...AGAATGAGAGGCTACATAGGTGTGTAAATCTGGACAATGTGACTTTAAATGATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp AGAACAGTCAGTTCTGAAATCCAAAGCAAGAACCAACACACCTTTGTTTTGTTAGGAACTGTGAGAGAGTaGGCCTGTCTTGTGGTGAGC +
Preference number: 4 (lower is better)
Translates to: RTVSSEIQSKNQHTFVLLGTVRE*ACLVVS
Trigger: GCTCACCACAAGACAGGCTCACTCTCTCACAGTTCC...TAACAAAACAAAGGTGTGTTGGTTCTTGCTTTGGATTTCAGAACTGACTGTTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR TCA 90 bp ATTCAACTAGAACAGTCAGTTCTGAAATCCAAAGCAAGAACCAACACACCTTTGTGCGGGTGTAGAGCATaGGCAGACGCACAAAGTTCA +
Preference number: 4 (lower is better)
Translates to: IQLEQSVLKSKARTNTPLCGCRA*ADAQSS
Trigger: TGAACTTTGTGCGTCTGCTCATGCTCTACACCCGCA...CAAAGGTGTGTTGGTTCTTGCTTTGGATTTCAGAACTGACTGTTCTAGTTGAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR TCA 90 bp TTACACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATGTCTTTCTCATCCCTaGGGAAGTAAAAGTACTGGA +
Preference number: 4 (lower is better)
Translates to: LHTYVASHSLAPKQLWTTCLSHP*GSKSTG
Trigger: TCCAGTACTTTTACTTCCTCAGGGATGAGAAAGACA...TGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTGTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp CCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGTAAATACGGTCTCCACAGCGCATaGAGTAATAAATTAATGCCC +
Preference number: 4 (lower is better)
Translates to: PLILWPQNNCGQHFPSKYGLHSA*SNKLMP
Trigger: GGGCATTAATTTATTACTGCATGCGCTGTGGAGACC...GTATTTACTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp GATTTACACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAGTCATAAAGCTTCGCTaGCTCTTCAAACAGTCCTTT +
Preference number: 4 (lower is better)
Translates to: DLHTYVASHSLAPKQLWTVIKLR*LFKQSF
Trigger: AAAGGACTGTTTGAAGAGGCAGCGAAGCTTTATGAC...TGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTGTAAATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp TTACACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACAATTTCGTTCTACATGTaGAAGCTCAGAGATGCCTTC +
Preference number: 4 (lower is better)
Translates to: LHTYVASHSLAPKQLWTTISFYM*KLRDAF
Trigger: GAAGGCATCTCTGAGCTTCCACATGTAGAACGAAAT...TGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTGTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp TCCCAAGTAAATACACACACACACACACACACACACACACACACACACACCCCATCATTTGTTTTACCATaGCCCACATGTCAGAAATGC +
Preference number: 4 (lower is better)
Translates to: SQVNTHTHTHTHTHTHTPSFVLP*PTCQKC
Trigger: GCATTTCTGACATGTGGGCCATGGTAAAACAAATGA...TGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTACTTGGGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp CACAATTCTTTGCTTAAAATATCCCAAAGCATCACAGCAGTAACCACGGAACTCGGAAGAGGAAGGCAATaGCAGCTTCAAACTGTGCAG +
Preference number: 4 (lower is better)
Translates to: HNSLLKISQSITAVTTELGRGRQ*QLQTVQ
Trigger: CTGCACAGTTTGAAGCTGCCATTGCCTTCCTCTTCC...GAGTTCCGTGGTTACTGCTGTGATGCTTTGGGATATTTTAAGCAAAGAATTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR TCA 90 bp AATCATTTAAAGTCACATTGTCCAGATTTACACACCTATGTAGCCTCTCATTCTGGAACTGTGAGAGAGTaGGCCTGTCTTGTGGTGAGC +
Preference number: 4 (lower is better)
Translates to: NHLKSHCPDLHTYVASHSGTVRE*ACLVVS
Trigger: GCTCACCACAAGACAGGCTCACTCTCTCACAGTTCC...AGAATGAGAGGCTACATAGGTGTGTAAATCTGGACAATGTGACTTTAAATGATT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp ACTAGAACAGTCAGTTCTGAAATCCAAAGCAAGAACCAACACACCTTTGTTTTGTTTGCACTTATTCCCTaGGCTCTGTACCTCTCCGCA +
Preference number: 4 (lower is better)
Translates to: TRTVSSEIQSKNQHTFVLFALIP*ALYLSA
Trigger: TGCGGAGAGGTACAGAGCTCAGGGAATAAGTGCAAA...CAAAACAAAGGTGTGTTGGTTCTTGCTTTGGATTTCAGAACTGACTGTTCTAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR GCA 90 bp TTACACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACAACAATCTTCTATCCTTaGTGTTCATGTACTCCTGGA +
Preference number: 4 (lower is better)
Translates to: LHTYVASHSLAPKQLWTTTIFYP*CSCTPG
Trigger: TCCAGGAGTACATGAACAGCAAGGATAGAAGATTGT...TGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTGTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp GATTTACACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACAATCTTCTATCCTTaGTGTTCATGTACTCCTGGA +
Preference number: 4 (lower is better)
Translates to: DLHTYVASHSLAPKQLWTTIFYP*CSCTPG
Trigger: TCCAGGAGTACATGAACAGCAAGGATAGAAGATTGT...TGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTGTAAATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR GCA 90 bp ACTAGAACAGTCAGTTCTGAAATCCAAAGCAAGAACCAACACACCTTTGTTTTGGGCAGCTTCAAACTGTaGAGTCAGGAACAGCACTTG +
Preference number: 4 (lower is better)
Translates to: TRTVSSEIQSKNQHTFVLGSFKL*SQEQHL
Trigger: CAAGTGCTGTTCCTGACTGCACAGTTTGAAGCTGCC...CAAAACAAAGGTGTGTTGGTTCTTGCTTTGGATTTCAGAACTGACTGTTCTAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR CCA 90 bp AGAACAGTCAGTTCTGAAATCCAAAGCAAGAACCAACACACCTTTGTTTTGTTATTAAATTCCCCAAGCTaGTGCTGGGCTCGACTGACG +
Preference number: 4 (lower is better)
Translates to: RTVSSEIQSKNQHTFVLLLNSPS*CWARLT
Trigger: CGTCAGTCGAGCCCAGCACCAGCTTGGGGAATTTAA...TAACAAAACAAAGGTGTGTTGGTTCTTGCTTTGGATTTCAGAACTGACTGTTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR CCA 90 bp CACAACAGAAACAAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATATTTGTTTTCTGTAGCTaGAGACAATCTTCTATCCTT +
Preference number: 4 (lower is better)
Translates to: HNRNKTGNPPQLAHVPNIFVFCS*RQSSIL
Trigger: AAGGATAGAAGATTGTCTCCAGCTACAGAAAACAAA...TATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTTGTTTCTGTTGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp ATTCAACTAGAACAGTCAGTTCTGAAATCCAAAGCAAGAACCAACACACCTTTGTCTAGCAGCTGCTTCTaGAACTGTGAGAGAGTGAGC +
Preference number: 4 (lower is better)
Translates to: IQLEQSVLKSKARTNTPLSSSCF*NCERVS
Trigger: GCTCACTCTCTCACAGTTCCAGAAGCAGCTGCTAGA...CAAAGGTGTGTTGGTTCTTGCTTTGGATTTCAGAACTGACTGTTCTAGTTGAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR CCA 90 bp CAATACTGGGTTAAGGTGGGAAGACCCACAATTCTTTGCTTAAAATATCCCAAATGTACCTCTCCGCAATaGAGAGGGCCATGTTCTTCA +
Preference number: 4 (lower is better)
Translates to: QYWVKVGRPTILCLKYPKCTSPQ*RGPCSS
Trigger: TGAAGAACATGGCCCTCTCCATTGCGGAGAGGTACA...TTTGGGATATTTTAAGCAAAGAATTGTGGGTCTTCCCACCTTAACCCAGTATTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR GCA 90 bp CAATACTGGGTTAAGGTGGGAAGACCCACAATTCTTTGCTTAAAATATCCCAAAGACGCCAGCAGTGTGTaGAGAATCCTTTGTTTCACT +
Preference number: 4 (lower is better)
Translates to: QYWVKVGRPTILCLKYPKDASSV*RILCFT
Trigger: AGTGAAACAAAGGATTCTGCACACACTGCTGGCGTC...TTTGGGATATTTTAAGCAAAGAATTGTGGGTCTTCCCACCTTAACCCAGTATTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR CCA 90 bp TTTAAAGTCACATTGTCCAGATTTACACACCTATGTAGCCTCTCATTCTCTGGCAGACTCTCCAGTCTCTaGGAGATATGGGATATGTCA +
Preference number: 4 (lower is better)
Translates to: FKVTLSRFTHLCSLSFSGRLSSL*EIWDMS
Trigger: TGACATATCCCATATCTCCCAGAGACTGGAGAGTCT...GCCAGAGAATGAGAGGCTACATAGGTGTGTAAATCTGGACAATGTGACTTTAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR TCA 90 bp AGAACAGTCAGTTCTGAAATCCAAAGCAAGAACCAACACACCTTTGTTTTGTTAATCCCAAGGCTTGCTTaGCAAAGTCCATACGCACTT +
Preference number: 4 (lower is better)
Translates to: RTVSSEIQSKNQHTFVLLIPRLA*QSPYAL
Trigger: AAGTGCGTATGGACTTTGTCAAGCAAGCCTTGGGAT...TAACAAAACAAAGGTGTGTTGGTTCTTGCTTTGGATTTCAGAACTGACTGTTCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR TCA 90 bp AGAACAGTCAGTTCTGAAATCCAAAGCAAGAACCAACACACCTTTGTTTTGTTATGTCTTTCTCATCCCTaGGGAAGTAAAAGTACTGGA +
Preference number: 4 (lower is better)
Translates to: RTVSSEIQSKNQHTFVLLCLSHP*GSKSTG
Trigger: TCCAGTACTTTTACTTCCTCAGGGATGAGAAAGACA...TAACAAAACAAAGGTGTGTTGGTTCTTGCTTTGGATTTCAGAACTGACTGTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR GCA 90 bp AGAACAGTCAGTTCTGAAATCCAAAGCAAGAACCAACACACCTTTGTTTTGTTAGTCATAAAGCTTCGCTaGCTCTTCAAACAGTCCTTT +
Preference number: 4 (lower is better)
Translates to: RTVSSEIQSKNQHTFVLLVIKLR*LFKQSF
Trigger: AAAGGACTGTTTGAAGAGGCAGCGAAGCTTTATGAC...TAACAAAACAAAGGTGTGTTGGTTCTTGCTTTGGATTTCAGAACTGACTGTTCT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
3UTR CAA 72 bp TCTGAAATCCAAAGCAAGAACCAACACACCTTTGTTTaGTTATTGAAATCAGGCAATACTGGGTTAAGGTGG +
Preference number: 4 (lower is better)
Translates to: SEIQSKNQHTFV*LLKSGNTGLRW
Trigger: CCACCTTAACCCAGTATTGCCTGATTTCAATAACAAAACAAAGGTGTGTTGGTTCTTGCTTTGGATTTCAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR GCA 90 bp AGAACAGTCAGTTCTGAAATCCAAAGCAAGAACCAACACACCTTTGTTTTGTTAACAATCTTCTATCCTTaGTGTTCATGTACTCCTGGA +
Preference number: 4 (lower is better)
Translates to: RTVSSEIQSKNQHTFVLLTIFYP*CSCTPG
Trigger: TCCAGGAGTACATGAACAGCAAGGATAGAAGATTGT...TAACAAAACAAAGGTGTGTTGGTTCTTGCTTTGGATTTCAGAACTGACTGTTCT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR GCA 90 bp AATCATTTAAAGTCACATTGTCCAGATTTACACACCTATGTAGCCTCTCATTCTGTCATAAAGCTTCGCTaGCTCTTCAAACAGTCCTTT +
Preference number: 4 (lower is better)
Translates to: NHLKSHCPDLHTYVASHSVIKLR*LFKQSF
Trigger: AAAGGACTGTTTGAAGAGGCAGCGAAGCTTTATGAC...AGAATGAGAGGCTACATAGGTGTGTAAATCTGGACAATGTGACTTTAAATGATT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CCA 90 bp AATCATTTAAAGTCACATTGTCCAGATTTACACACCTATGTAGCCTCTCATTCTTTTGTTTTCTGTAGCTaGAGACAATCTTCTATCCTT +
Preference number: 4 (lower is better)
Translates to: NHLKSHCPDLHTYVASHSFVFCS*RQSSIL
Trigger: AAGGATAGAAGATTGTCTCCAGCTACAGAAAACAAA...AGAATGAGAGGCTACATAGGTGTGTAAATCTGGACAATGTGACTTTAAATGATT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS TCA 90 bp GGGCTTCTCTTGGGTCCGTGGACTCAAACTTGCGGGTGTAGAGCATaGGCAGACGCACAAAGTTCAGCCGTCGCATGCAGGGAGGGTCGC +
Preference number: 5 (lower is better)
Translates to: GLLLGPWTQTCGCRA*ADAQSSAVACREGR
Trigger: GCGACCCTCCCTGCATGCGACGGCTGAACTTTGTGCGTCTGCTCATGCTCTACACCCGCAAGTTTGAGTCCACGGACCCAAGAGAAGCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS CCA 90 bp AAAAGCAGCTTTAGCTCAAACAGCACCAGGGCCACATGGACAGCATaGCAGCGCAGCCGCTCCATGCGGAAGAGGAAGGCAATGGCAGCT +
Preference number: 5 (lower is better)
Translates to: KSSFSSNSTRATWTA*QRSRSMRKRKAMAA
Trigger: AGCTGCCATTGCCTTCCTCTTCCGCATGGAGCGGCTGCGCTGCCATGCTGTCCATGTGGCCCTGGTGCTGTTTGAGCTAAAGCTGCTTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp GGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCACAGGGCTTAGCAGCTaGTTCATCAGCTCCAGCACC +
Preference number: 5 (lower is better)
Translates to: GNPPQLAHVPNILTVCSPTGLSS*FISSST
Trigger: GGTGCTGGAGCTGATGAACAAGCTGCTAAGCCCTGT...GGGACTGCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS CCA 90 bp GAGGACTTTAAAAGCAGCTTTAGCTCAAACAGCACCAGGGCCACATaGACAGCATGGCAGCGCAGCCGCTCCATGCGGAAGAGGAAGGCA +
Preference number: 5 (lower is better)
Translates to: EDFKSSFSSNSTRAT*TAWQRSRSMRKRKA
Trigger: TGCCTTCCTCTTCCGCATGGAGCGGCTGCGCTGCCATGCTGTCCATGTGGCCCTGGTGCTGTTTGAGCTAAAGCTGCTTTTAAAGTCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS TCA 90 bp CAGGGGGATTCACATCACCGATGTAACTCGGCTCACTTTCTTGGGTaGAGTCAAGGGCATCCTCTCCCGACGCCAGCAGTGTGTGCAGAA +
Preference number: 5 (lower is better)
Translates to: QGDSHHRCNSAHFLG*SQGHPLPTPAVCAE
Trigger: TTCTGCACACACTGCTGGCGTCGGGAGAGGATGCCCTTGACTTCACCCAAGAAAGTGAGCCGAGTTACATCGGTGATGTGAATCCCCCTG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp GGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCAGAAGAACTGATGCCTaGACATCTGCTGTCTCCTGG +
Preference number: 5 (lower is better)
Translates to: GNPPQLAHVPNILTVCSPRRTDA*TSAVSW
Trigger: CCAGGAGACAGCAGATGTCAAGGCATCAGTTCTTCT...GGGACTGCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp GGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCAGTCAGGAACAGCACTaGAAAGTAGAGGAAGGGCTG +
Preference number: 5 (lower is better)
Translates to: GNPPQLAHVPNILTVCSPSQEQH*KVEEGL
Trigger: CAGCCCTTCCTCTACTTTCAAGTGCTGTTCCTGACT...GGGACTGCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp AAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCCTCGTGGCTGAGGAGTaGAGCACTCTGTCCAGAGGA +
Preference number: 5 (lower is better)
Translates to: KTGNPPQLAHVPNILTVCLVAEE*STLSRG
Trigger: TCCTCTGGACAGAGTGCTCAACTCCTCAGCCACGAG...GCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp GGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCTTCTTCAGCCTTTCTTaGTTAGACTGTGGGGCGCTG +
Preference number: 5 (lower is better)
Translates to: GNPPQLAHVPNILTVCSPFFSLS*LDCGAL
Trigger: CAGCGCCCCACAGTCTAACAAAGAAAGGCTGAAGAA...GGGACTGCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp GCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCAGACCCCATCAAACACAGCTCGCTGGGGCCTGGTaGCTGAAGATGGACTTGTTC +
Preference number: 5 (lower is better)
Translates to: AHVPNILTVCSPRPHQTQLAGAW*LKMDLF
Trigger: GAACAAGTCCATCTTCAGCAACCAGGCCCCAGCGAG...CTGTGTTTGATGGGGTCTGGGACTGCACACTGTCAGTATATTAGGCACGTGGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp AAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCCTCGCTGGGGCCTGGTaGCTGAAGATGGACTTGTTC +
Preference number: 5 (lower is better)
Translates to: KTGNPPQLAHVPNILTVCLAGAW*LKMDLF
Trigger: GAACAAGTCCATCTTCAGCAACCAGGCCCCAGCGAG...GCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp CACAGCAGTAACCACGGAACTCCTCTGGGCTCCAGTCTGAGTTTACATGGTGCACTCGCTGGGGCCTGGTaGCTGAAGATGGACTTGTTC +
Preference number: 5 (lower is better)
Translates to: HSSNHGTPLGSSLSLHGALAGAW*LKMDLF
Trigger: GAACAAGTCCATCTTCAGCAACCAGGCCCCAGCGAG...TGCACCATGTAAACTCAGACTGGAGCCCAGAGGAGTTCCGTGGTTACTGCTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS GCA 90 bp TGGGATGTGCGTGTGAGGGTACGGGAACGCAGGCGCTCACCAGCTTaGTGGATCTCCTGTAAATTTCGTTCTACATGTGGAAGCTCAGAG +
Preference number: 5 (lower is better)
Translates to: WDVRVRVRERRRSPA*WISCKFRSTCGSSE
Trigger: CTCTGAGCTTCCACATGTAGAACGAAATTTACAGGAGATCCAGCAAGCTGGTGAGCGCCTGCGTTCCCGTACCCTCACACGCACATCCCA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS GCA 90 bp GTCCATACGCACTTCCACACTGCTCCGGCTCTTCAGGGCGTCAGTTaGTGGTGTCAGCACCACATCTGTCATTTGTTTTACCATGGCCCA +
Preference number: 5 (lower is better)
Translates to: VHTHFHTAPALQGVS*WCQHHICHLFYHGP
Trigger: TGGGCCATGGTAAAACAAATGACAGATGTGGTGCTGACACCAGCAACTGACGCCCTGAAGAGCCGGAGCAGTGTGGAAGTGCGTATGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS CCA 90 bp AGCCCTGAATGTCCGTGTCCTTCACAGGCTCGAGAGGTTCAAAAGTaGTGGCTGCGCTCAGACTCTCCAGTCTCTGGGAGATATGGGATA +
Preference number: 5 (lower is better)
Translates to: SPECPCPSQAREVQK*WLRSDSPVSGRYGI
Trigger: TATCCCATATCTCCCAGAGACTGGAGAGTCTGAGCGCAGCCACCACTTTTGAACCTCTCGAGCCTGTGAAGGACACGGACATTCAGGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp GGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCATGTCAGAAATGCTCTaGTCATCCAGCTCTGCGACA +
Preference number: 5 (lower is better)
Translates to: GNPPQLAHVPNILTVCSPMSEML*SSSSAT
Trigger: TGTCGCAGAGCTGGATGACAAGAGCATTTCTGACAT...GGGACTGCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS GCA 90 bp GAAACTCCGAACCAGCTGGTAAGTCCCAGGCACACCGCCCAGCTGTaGCTGATGCAGATTTCCGAAGACAGTCACAAGGGTGTAATTCTT +
Preference number: 5 (lower is better)
Translates to: ETPNQLVSPRHTAQL*LMQISEDSHKGVIL
Trigger: AAGAATTACACCCTTGTGACTGTCTTCGGAAATCTGCATCAGGCACAGCTGGGCGGTGTGCCTGGGACTTACCAGCTGGTTCGGAGTTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS CCA 90 bp GATGTGCGTGTGAGGGTACGGGAACGCAGGCGCTCACCAGCTTGCTaGATCTCCTGTAAATTTCGTTCTACATGTGGAAGCTCAGAGATG +
Preference number: 5 (lower is better)
Translates to: DVRVRVRERRRSPAC*ISCKFRSTCGSSEM
Trigger: CATCTCTGAGCTTCCACATGTAGAACGAAATTTACAGGAGATCCAGCAAGCTGGTGAGCGCCTGCGTTCCCGTACCCTCACACGCACATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS CCA 90 bp CCTGAATGTCCGTGTCCTTCACAGGCTCGAGAGGTTCAAAAGTGGTaGCTGCGCTCAGACTCTCCAGTCTCTGGGAGATATGGGATATGT +
Preference number: 5 (lower is better)
Translates to: PECPCPSQAREVQKW*LRSDSPVSGRYGIC
Trigger: ACATATCCCATATCTCCCAGAGACTGGAGAGTCTGAGCGCAGCCACCACTTTTGAACCTCTCGAGCCTGTGAAGGACACGGACATTCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS CCA 90 bp CATACGCACTTCCACACTGCTCCGGCTCTTCAGGGCGTCAGTTGCTaGTGTCAGCACCACATCTGTCATTTGTTTTACCATGGCCCACAT +
Preference number: 5 (lower is better)
Translates to: HTHFHTAPALQGVSC*CQHHICHLFYHGPH
Trigger: ATGTGGGCCATGGTAAAACAAATGACAGATGTGGTGCTGACACCAGCAACTGACGCCCTGAAGAGCCGGAGCAGTGTGGAAGTGCGTATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp GGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCTGTGTGCAGAATCCTTaGTTTCACTTGTTCCCACTC +
Preference number: 5 (lower is better)
Translates to: GNPPQLAHVPNILTVCSPCVQNP*FHLFPL
Trigger: GAGTGGGAACAAGTGAAACAAAGGATTCTGCACACA...GGGACTGCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp GGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCCACCACATCTGTCATTaGTTTTACCATGGCCCACAT +
Preference number: 5 (lower is better)
Translates to: GNPPQLAHVPNILTVCSPHHICH*FYHGPH
Trigger: ATGTGGGCCATGGTAAAACAAATGACAGATGTGGTG...GGGACTGCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp CGGAACTCCTCTGGGCTCCAGTCTGAGTTTACATGGTGCAGGAGTGGGGTCTGCGCCACCGAAGCAACTTaGTTGATAATAGGCTTTGTG +
Preference number: 5 (lower is better)
Translates to: RNSSGLQSEFTWCRSGVCATEAT*LIIGFV
Trigger: CACAAAGCCTATTATCAACAAAGTTGCTTCGGTGGC...GCAGACCCCACTCCTGCACCATGTAAACTCAGACTGGAGCCCAGAGGAGTTCCG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS GCA 90 bp AATGTCCGTGTCCTTCACAGGCTCGAGAGGTTCAAAAGTGGTGGCTaGGCTCAGACTCTCCAGTCTCTGGGAGATATGGGATATGTCAAG +
Preference number: 5 (lower is better)
Translates to: NVRVLHRLERFKSGG*AQTLQSLGDMGYVK
Trigger: CTTGACATATCCCATATCTCCCAGAGACTGGAGAGTCTGAGCGCAGCCACCACTTTTGAACCTCTCGAGCCTGTGAAGGACACGGACATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS GCA 90 bp TCTTGGGTGAAGTCAAGGGCATCCTCTCCCGACGCCAGCAGTGTGTaGAGAATCCTTTGTTTCACTTGTTCCCACTCGACCAGCATTGAT +
Preference number: 5 (lower is better)
Translates to: SWVKSRASSPDASSV*RILCFTCSHSTSID
Trigger: ATCAATGCTGGTCGAGTGGGAACAAGTGAAACAAAGGATTCTGCACACACTGCTGGCGTCGGGAGAGGATGCCCTTGACTTCACCCAAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS GCA 90 bp CTGTTCATGTACTCCTGGAACCAAGTTTTAAATTCCCCAAGCTGGTaGTGGGCTCGACTGACGACTTGTGATGCGGCAAGCAGGTCTCCA +
Preference number: 5 (lower is better)
Translates to: LFMYSWNQVLNSPSW*WARLTTCDAASRSP
Trigger: TGGAGACCTGCTTGCCGCATCACAAGTCGTCAGTCGAGCCCAGCACCAGCTTGGGGAATTTAAAACTTGGTTCCAGGAGTACATGAACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS CCA 90 bp TCAAAAGTGGTGGCTGCGCTCAGACTCTCCAGTCTCTGGGAGATATaGGATATGTCAAGTCCCCTTGACCCGAGAAGAACTGATGCCTTG +
Preference number: 5 (lower is better)
Translates to: SKVVAALRLSSLWEI*DMSSPLDPRRTDAL
Trigger: CAAGGCATCAGTTCTTCTCGGGTCAAGGGGACTTGACATATCCCATATCTCCCAGAGACTGGAGAGTCTGAGCGCAGCCACCACTTTTGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS CCA 90 bp TCGAGAGGTTCAAAAGTGGTGGCTGCGCTCAGACTCTCCAGTCTCTaGGAGATATGGGATATGTCAAGTCCCCTTGACCCGAGAAGAACT +
Preference number: 5 (lower is better)
Translates to: SRGSKVVAALRLSSL*EIWDMSSPLDPRRT
Trigger: AGTTCTTCTCGGGTCAAGGGGACTTGACATATCCCATATCTCCCAGAGACTGGAGAGTCTGAGCGCAGCCACCACTTTTGAACCTCTCGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS CCA 90 bp TTCATGTACTCCTGGAACCAAGTTTTAAATTCCCCAAGCTGGTGCTaGGCTCGACTGACGACTTGTGATGCGGCAAGCAGGTCTCCACAG +
Preference number: 5 (lower is better)
Translates to: FMYSWNQVLNSPSWC*ARLTTCDAASRSPQ
Trigger: CTGTGGAGACCTGCTTGCCGCATCACAAGTCGTCAGTCGAGCCCAGCACCAGCTTGGGGAATTTAAAACTTGGTTCCAGGAGTACATGAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS CCA 90 bp GTCTTTCTCATCCCTGAGGAAGTAAAAGTACTGGAGGGCTTCTCTTaGGTCCGTGGACTCAAACTTGCGGGTGTAGAGCATGAGCAGACG +
Preference number: 5 (lower is better)
Translates to: VFLIPEEVKVLEGFS*VRGLKLAGVEHEQT
Trigger: CGTCTGCTCATGCTCTACACCCGCAAGTTTGAGTCCACGGACCCAAGAGAAGCCCTCCAGTACTTTTACTTCCTCAGGGATGAGAAAGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp AAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCAGCAAGCTGTTCAGCTaGCTGAAGGAGCTCACCAAA +
Preference number: 5 (lower is better)
Translates to: KTGNPPQLAHVPNILTVCSKLFS*LKELTK
Trigger: TTTGGTGAGCTCCTTCAGCAAGCTGAACAGCTTGCT...GCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp AAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCAGAAGAACTGATGCCTaGACATCTGCTGTCTCCTGG +
Preference number: 5 (lower is better)
Translates to: KTGNPPQLAHVPNILTVCRRTDA*TSAVSW
Trigger: CCAGGAGACAGCAGATGTCAAGGCATCAGTTCTTCT...GCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp CACAACAGAAACAAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATATCTTCAGGGCGTCAGTaGCTGGTGTCAGCACCACAT +
Preference number: 5 (lower is better)
Translates to: HNRNKTGNPPQLAHVPNISSGRQ*LVSAPH
Trigger: ATGTGGTGCTGACACCAGCAACTGACGCCCTGAAGA...TATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTTGTTTCTGTTGTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp CATGGTGCAGGAGTGGGGTCTGCTTTCTGCCTCCAGTGTGAAGAAGCTTCCAGCGACAATCTTCTATCCTaGCTGTTCATGTACTCCTGG +
Preference number: 5 (lower is better)
Translates to: HGAGVGSAFCLQCEEASSDNLLS*LFMYSW
Trigger: CCAGGAGTACATGAACAGCAAGGATAGAAGATTGTC...GCTGGAAGCTTCTTCACACTGGAGGCAGAAAGCAGACCCCACTCCTGCACCATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR CAA 90 bp GCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCAGACCCCATCAAACACAGTTCTTCAGCCTTTCTTaGTTAGACTGTGGGGCGCTG +
Preference number: 5 (lower is better)
Translates to: AHVPNILTVCSPRPHQTQFFSLS*LDCGAL
Trigger: CAGCGCCCCACAGTCTAACAAAGAAAGGCTGAAGAA...CTGTGTTTGATGGGGTCTGGGACTGCACACTGTCAGTATATTAGGCACGTGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp CCACGGAACTCCTCTGGGCTCCAGTCTGAGTTTACATGGTGCAGGAGTGGGGTCAGTCCACAAACTTATTaGCACTTATTCCCTGAGCTC +
Preference number: 5 (lower is better)
Translates to: PRNSSGLQSEFTWCRSGVSPQTY*HLFPEL
Trigger: GAGCTCAGGGAATAAGTGCAAATAAGTTTGTGGACT...GACCCCACTCCTGCACCATGTAAACTCAGACTGGAGCCCAGAGGAGTTCCGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR CAA 90 bp GGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCAGTCCACAAACTTATTaGCACTTATTCCCTGAGCTC +
Preference number: 5 (lower is better)
Translates to: GNPPQLAHVPNILTVCSPSPQTY*HLFPEL
Trigger: GAGCTCAGGGAATAAGTGCAAATAAGTTTGTGGACT...GGGACTGCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp GGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCAGAACTTCTGAGAGGTaGTGTCTGATTTCATCACTG +
Preference number: 5 (lower is better)
Translates to: GNPPQLAHVPNILTVCSPRTSER*CLISSL
Trigger: CAGTGATGAAATCAGACACAACCTCTCAGAAGTTCT...GGGACTGCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp CGGAACTCCTCTGGGCTCCAGTCTGAGTTTACATGGTGCAGGAGTGGGGTCTGCAGAACTTCTGAGAGGTaGTGTCTGATTTCATCACTG +
Preference number: 5 (lower is better)
Translates to: RNSSGLQSEFTWCRSGVCRTSER*CLISSL
Trigger: CAGTGATGAAATCAGACACAACCTCTCAGAAGTTCT...GCAGACCCCACTCCTGCACCATGTAAACTCAGACTGGAGCCCAGAGGAGTTCCG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS CCA 90 bp TTGCTGTTCATGTACTCCTGGAACCAAGTTTTAAATTCCCCAAGCTaGTGCTGGGCTCGACTGACGACTTGTGATGCGGCAAGCAGGTCT +
Preference number: 5 (lower is better)
Translates to: LLFMYSWNQVLNSPS*CWARLTTCDAASRS
Trigger: AGACCTGCTTGCCGCATCACAAGTCGTCAGTCGAGCCCAGCACCAGCTTGGGGAATTTAAAACTTGGTTCCAGGAGTACATGAACAGCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp AAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCATATGTCAAGTCCCCTaGACCCGAGAAGAACTGATG +
Preference number: 5 (lower is better)
Translates to: KTGNPPQLAHVPNILTVCICQVP*TREELM
Trigger: CATCAGTTCTTCTCGGGTCAAGGGGACTTGACATAT...GCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp GCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCAGACCCCATCAAACACAGATATGTCAAGTCCCCTaGACCCGAGAAGAACTGATG +
Preference number: 5 (lower is better)
Translates to: AHVPNILTVCSPRPHQTQICQVP*TREELM
Trigger: CATCAGTTCTTCTCGGGTCAAGGGGACTTGACATAT...CTGTGTTTGATGGGGTCTGGGACTGCACACTGTCAGTATATTAGGCACGTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp CACAACAGAAACAAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATAACTCGGCTCACTTTCTaGGGTGAAGTCAAGGGCATC +
Preference number: 5 (lower is better)
Translates to: HNRNKTGNPPQLAHVPNITRLTF*GEVKGI
Trigger: GATGCCCTTGACTTCACCCAAGAAAGTGAGCCGAGT...TATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTTGTTTCTGTTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp GCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCAGACCCCATCAAACACAGATGTCAGAAATGCTCTaGTCATCCAGCTCTGCGACA +
Preference number: 5 (lower is better)
Translates to: AHVPNILTVCSPRPHQTQMSEML*SSSSAT
Trigger: TGTCGCAGAGCTGGATGACAAGAGCATTTCTGACAT...CTGTGTTTGATGGGGTCTGGGACTGCACACTGTCAGTATATTAGGCACGTGGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp GTTTACATGGTGCAGGAGTGGGGTCTGCTTTCTGCCTCCAGTGTGAAGAAGCTTAGTCAGGAACAGCACTaGAAAGTAGAGGAAGGGCTG +
Preference number: 5 (lower is better)
Translates to: VYMVQEWGLLSASSVKKLSQEQH*KVEEGL
Trigger: CAGCCCTTCCTCTACTTTCAAGTGCTGTTCCTGACT...AAGCTTCTTCACACTGGAGGCAGAAAGCAGACCCCACTCCTGCACCATGTAAAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR CAA 90 bp GATTTACACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACACTCGTGGCTGAGGAGTaGAGCACTCTGTCCAGAGGA +
Preference number: 5 (lower is better)
Translates to: DLHTYVASHSLAPKQLWTLVAEE*STLSRG
Trigger: TCCTCTGGACAGAGTGCTCAACTCCTCAGCCACGAG...TGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTGTAAATC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp CACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCTCGTGGCTGAGGAGTaGAGCACTCTGTCCAGAGGA +
Preference number: 5 (lower is better)
Translates to: HTYVASHSLAPKQLWTTFLVAEE*STLSRG
Trigger: TCCTCTGGACAGAGTGCTCAACTCCTCAGCCACGAG...AAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp GGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCACCGAAGCAACTTTGTaGATAATAGGCTTTGTGTCA +
Preference number: 5 (lower is better)
Translates to: GNPPQLAHVPNILTVCSPTEATL*IIGFVS
Trigger: TGACACAAAGCCTATTATCAACAAAGTTGCTTCGGT...GGGACTGCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp TTACACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACACTCGCTGGGGCCTGGTaGCTGAAGATGGACTTGTTC +
Preference number: 5 (lower is better)
Translates to: LHTYVASHSLAPKQLWTTLAGAW*LKMDLF
Trigger: GAACAAGTCCATCTTCAGCAACCAGGCCCCAGCGAG...TGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTGTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS GCA 90 bp TCTTCTCGTTATAGATATAGATCTGCCGGGCATAGGCCATCTCAATaGTATCCAGAGAGCTTCGCCCAGGGGGATTCACATCACCGATGT +
Preference number: 5 (lower is better)
Translates to: SSRYRYRSAGHRPSQ*YPESFAQGDSHHRC
Trigger: ACATCGGTGATGTGAATCCCCCTGGGCGAAGCTCTCTGGATAGCATTGAGATGGCCTATGCCCGGCAGATCTATATCTATAACGAGAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp CACAGCAGTAACCACGGAACTCCTCTGGGCTCCAGTCTGAGTTTACATGGTGCATGTGTGCAGAATCCTTaGTTTCACTTGTTCCCACTC +
Preference number: 5 (lower is better)
Translates to: HSSNHGTPLGSSLSLHGACVQNP*FHLFPL
Trigger: GAGTGGGAACAAGTGAAACAAAGGATTCTGCACACA...TGCACCATGTAAACTCAGACTGGAGCCCAGAGGAGTTCCGTGGTTACTGCTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR CAA 90 bp AAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCTGTGTGCAGAATCCTTaGTTTCACTTGTTCCCACTC +
Preference number: 5 (lower is better)
Translates to: KTGNPPQLAHVPNILTVCCVQNP*FHLFPL
Trigger: GAGTGGGAACAAGTGAAACAAAGGATTCTGCACACA...GCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp GTTTACATGGTGCAGGAGTGGGGTCTGCTTTCTGCCTCCAGTGTGAAGAAGCTTATGTCAGAAATGCTCTaGTCATCCAGCTCTGCGACA +
Preference number: 5 (lower is better)
Translates to: VYMVQEWGLLSASSVKKLMSEML*SSSSAT
Trigger: TGTCGCAGAGCTGGATGACAAGAGCATTTCTGACAT...AAGCTTCTTCACACTGGAGGCAGAAAGCAGACCCCACTCCTGCACCATGTAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR CAA 90 bp TATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGTCTTCAGGGCGTCAGTaGCTGGTGTCAGCACCACAT +
Preference number: 5 (lower is better)
Translates to: YVASHSLAPKQLWTTFPKSSGRQ*LVSAPH
Trigger: ATGTGGTGCTGACACCAGCAACTGACGCCCTGAAGA...CTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp CACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTTCTTCAGGGCGTCAGTaGCTGGTGTCAGCACCACAT +
Preference number: 5 (lower is better)
Translates to: HTYVASHSLAPKQLWTTFSSGRQ*LVSAPH
Trigger: ATGTGGTGCTGACACCAGCAACTGACGCCCTGAAGA...AAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp GCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCAGACCCCATCAAACACAGGACAATCTTCTATCCTaGCTGTTCATGTACTCCTGG +
Preference number: 5 (lower is better)
Translates to: AHVPNILTVCSPRPHQTQDNLLS*LFMYSW
Trigger: CCAGGAGTACATGAACAGCAAGGATAGAAGATTGTC...CTGTGTTTGATGGGGTCTGGGACTGCACACTGTCAGTATATTAGGCACGTGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp AAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCGACAATCTTCTATCCTaGCTGTTCATGTACTCCTGG +
Preference number: 5 (lower is better)
Translates to: KTGNPPQLAHVPNILTVCDNLLS*LFMYSW
Trigger: CCAGGAGTACATGAACAGCAAGGATAGAAGATTGTC...GCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp CATGGTGCAGGAGTGGGGTCTGCTTTCTGCCTCCAGTGTGAAGAAGCTTCCAGCAAACATGTTTTCTCCTaGACTGTCTTTCTCATCCCT +
Preference number: 5 (lower is better)
Translates to: HGAGVGSAFCLQCEEASSKHVFS*TVFLIP
Trigger: AGGGATGAGAAAGACAGTCAAGGAGAAAACATGTTT...GCTGGAAGCTTCTTCACACTGGAGGCAGAAAGCAGACCCCACTCCTGCACCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR CAA 90 bp GCCCACGTGCCTAATATACTGACAGTGTGCAGTCCCAGACCCCATCAAACACAGTCTTCAAACAGTCCTTaGTTTTCTGCCACCGAAGCA +
Preference number: 5 (lower is better)
Translates to: AHVPNILTVCSPRPHQTQSSNSP*FSATEA
Trigger: TGCTTCGGTGGCAGAAAACAAAGGACTGTTTGAAGA...CTGTGTTTGATGGGGTCTGGGACTGCACACTGTCAGTATATTAGGCACGTGGGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp CACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTACAGGGCTTAGCAGCTaGTTCATCAGCTCCAGCACC +
Preference number: 5 (lower is better)
Translates to: HTYVASHSLAPKQLWTTFTGLSS*FISSST
Trigger: GGTGCTGGAGCTGATGAACAAGCTGCTAAGCCCTGT...AAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS TCA 90 bp ATCCTTTGTTTCACTTGTTCCCACTCGACCAGCATTGATTCTCGATaGTACTCCTCAGCCATGCCAAAGGTCCTCTTCCGGGACTCTTCA +
Preference number: 5 (lower is better)
Translates to: ILCFTCSHSTSIDSR*YSSAMPKVLFRDSS
Trigger: TGAAGAGTCCCGGAAGAGGACCTTTGGCATGGCTGAGGAGTATCATCGAGAATCAATGCTGGTCGAGTGGGAACAAGTGAAACAAAGGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS TCA 90 bp TGTGTGCAGAATCCTTTGTTTCACTTGTTCCCACTCGACCAGCATTaGTTCTCGATGATACTCCTCAGCCATGCCAAAGGTCCTCTTCCG +
Preference number: 5 (lower is better)
Translates to: CVQNPLFHLFPLDQH*FSMILLSHAKGPLP
Trigger: CGGAAGAGGACCTTTGGCATGGCTGAGGAGTATCATCGAGAATCAATGCTGGTCGAGTGGGAACAAGTGAAACAAAGGATTCTGCACACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS TCA 90 bp GGGTGTAATTCTTATAACTCTGCTCAAGATATCCCAAGGCTTGCTTaGCAAAGTCCATACGCACTTCCACACTGCTCCGGCTCTTCAGGG +
Preference number: 5 (lower is better)
Translates to: GCNSYNSAQDIPRLA*QSPYALPHCSGSSG
Trigger: CCCTGAAGAGCCGGAGCAGTGTGGAAGTGCGTATGGACTTTGTCAAGCAAGCCTTGGGATATCTTGAGCAGAGTTATAAGAATTACACCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS CCA 90 bp CCTGAGGGCTCTGCGGTAGTGAAGTCGGAGTTTGTTTTCTGTAGCTaGAGACAATCTTCTATCCTTGCTGTTCATGTACTCCTGGAACCA +
Preference number: 5 (lower is better)
Translates to: PEGSAVVKSEFVFCS*RQSSILAVHVLLEP
Trigger: TGGTTCCAGGAGTACATGAACAGCAAGGATAGAAGATTGTCTCCAGCTACAGAAAACAAACTCCGACTTCACTACCGCAGAGCCCTCAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp TATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGACTCGGCTCACTTTCTaGGGTGAAGTCAAGGGCATC +
Preference number: 5 (lower is better)
Translates to: YVASHSLAPKQLWTTFPKTRLTF*GEVKGI
Trigger: GATGCCCTTGACTTCACCCAAGAAAGTGAGCCGAGT...CTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp CACAACAGAAACAAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATATATCCCAAGGCTTGCTaGACAAAGTCCATACGCACT +
Preference number: 5 (lower is better)
Translates to: HNRNKTGNPPQLAHVPNIYPKAC*TKSIRT
Trigger: AGTGCGTATGGACTTTGTCAAGCAAGCCTTGGGATA...TATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTTGTTTCTGTTGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp AAGCATCACAGCAGTAACCACGGAACTCCTCTGGGCTCCAGTCTGAGTTTACATTATCCCAAGGCTTGCTaGACAAAGTCCATACGCACT +
Preference number: 5 (lower is better)
Translates to: KHHSSNHGTPLGSSLSLHYPKAC*TKSIRT
Trigger: AGTGCGTATGGACTTTGTCAAGCAAGCCTTGGGATA...ATGTAAACTCAGACTGGAGCCCAGAGGAGTTCCGTGGTTACTGCTGTGATGCTT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR CAA 90 bp AGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGTAAATACAGGGCTTAGCAGCTaGTTCATCAGCTCCAGCACC +
Preference number: 5 (lower is better)
Translates to: SLSFSGPKTTVDNISQVNTGLSS*FISSST
Trigger: GGTGCTGGAGCTGATGAACAAGCTGCTAAGCCCTGT...ATTTACTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp AAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCAGTCCACAAACTTATTaGCACTTATTCCCTGAGCTC +
Preference number: 5 (lower is better)
Translates to: KTGNPPQLAHVPNILTVCSPQTY*HLFPEL
Trigger: GAGCTCAGGGAATAAGTGCAAATAAGTTTGTGGACT...GCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp AAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCAGAACTTCTGAGAGGTaGTGTCTGATTTCATCACTG +
Preference number: 5 (lower is better)
Translates to: KTGNPPQLAHVPNILTVCRTSER*CLISSL
Trigger: CAGTGATGAAATCAGACACAACCTCTCAGAAGTTCT...GCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS GCA 90 bp GATCAGGTCCAAGAGGAGATAGAATGTAGAGTCCACAAACTTATTTaGACTTATTCCCTGAGCTCTGTACCTCTCCGCAATGGAGAGGGC +
Preference number: 5 (lower is better)
Translates to: DQVQEEIECRVHKLI*TYSLSSVPLRNGEG
Trigger: GCCCTCTCCATTGCGGAGAGGTACAGAGCTCAGGGAATAAGTGCAAATAAGTTTGTGGACTCTACATTCTATCTCCTCTTGGACCTGATC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS CCA 90 bp TCTGTAGCTGGAGACAATCTTCTATCCTTGCTGTTCATGTACTCCTaGAACCAAGTTTTAAATTCCCCAAGCTGGTGCTGGGCTCGACTG +
Preference number: 5 (lower is better)
Translates to: SVAGDNLLSLLFMYS*NQVLNSPSWCWARL
Trigger: CAGTCGAGCCCAGCACCAGCTTGGGGAATTTAAAACTTGGTTCCAGGAGTACATGAACAGCAAGGATAGAAGATTGTCTCCAGCTACAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp TCCCAAGTAAATACACACACACACACACACACACACACACACACACACACCCCAATGTCAGAAATGCTCTaGTCATCCAGCTCTGCGACA +
Preference number: 5 (lower is better)
Translates to: SQVNTHTHTHTHTHTHTPMSEML*SSSSAT
Trigger: TGTCGCAGAGCTGGATGACAAGAGCATTTCTGACAT...TGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTACTTGGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp CACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTAGTCAGGAACAGCACTaGAAAGTAGAGGAAGGGCTG +
Preference number: 5 (lower is better)
Translates to: HTYVASHSLAPKQLWTTFSQEQH*KVEEGL
Trigger: CAGCCCTTCCTCTACTTTCAAGTGCTGTTCCTGACT...AAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp AAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATACTGACAGTGTGCAAACATGTTTTCTCCTaGACTGTCTTTCTCATCCCT +
Preference number: 5 (lower is better)
Translates to: KTGNPPQLAHVPNILTVCKHVFS*TVFLIP
Trigger: AGGGATGAGAAAGACAGTCAAGGAGAAAACATGTTT...GCACACTGTCAGTATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp CACAACAGAAACAAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATAGCCACCGAAGCAACTTaGTTGATAATAGGCTTTGTG +
Preference number: 5 (lower is better)
Translates to: HNRNKTGNPPQLAHVPNIATEAT*LIIGFV
Trigger: CACAAAGCCTATTATCAACAAAGTTGCTTCGGTGGC...TATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTTGTTTCTGTTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp CACCTTTGTTTTGTTATTGAAATCAGGCAATACTGGGTTAAGGTGGGAAGACCCACAGGGCTTAGCAGCTaGTTCATCAGCTCCAGCACC +
Preference number: 5 (lower is better)
Translates to: HLCFVIEIRQYWVKVGRPTGLSS*FISSST
Trigger: GGTGCTGGAGCTGATGAACAAGCTGCTAAGCCCTGT...GGGTCTTCCCACCTTAACCCAGTATTGCCTGATTTCAATAACAAAACAAAGGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR CAA 90 bp CACAACAGAAACAAAACTGGAAACCCACCCCAGCTGGCCCACGTGCCTAATATAGATGGACTTGTTCCTTaGAGCCTCTTAAACTGTGTG +
Preference number: 5 (lower is better)
Translates to: HNRNKTGNPPQLAHVPNIDGLVP*SLLNCV
Trigger: CACACAGTTTAAGAGGCTCAAAGGAACAAGTCCATC...TATATTAGGCACGTGGGCCAGCTGGGGTGGGTTTCCAGTTTTGTTTCTGTTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp CCAGATTTACACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGTGTGTGCAGAATCCTTaGTTTCACTTGTTCCCACTC +
Preference number: 5 (lower is better)
Translates to: PDLHTYVASHSLAPKQLWCVQNP*FHLFPL
Trigger: GAGTGGGAACAAGTGAAACAAAGGATTCTGCACACA...CCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTGTAAATCTGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp TCCCAAGTAAATACACACACACACACACACACACACACACACACACACACCCCACACCACATCTGTCATTaGTTTTACCATGGCCCACAT +
Preference number: 5 (lower is better)
Translates to: SQVNTHTHTHTHTHTHTPHHICH*FYHGPH
Trigger: ATGTGGGCCATGGTAAAACAAATGACAGATGTGGTG...TGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTACTTGGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp CACAATTCTTTGCTTAAAATATCCCAAAGCATCACAGCAGTAACCACGGAACTCTCTTCAGGGCGTCAGTaGCTGGTGTCAGCACCACAT +
Preference number: 5 (lower is better)
Translates to: HNSLLKISQSITAVTTELSSGRQ*LVSAPH
Trigger: ATGTGGTGCTGACACCAGCAACTGACGCCCTGAAGA...GAGTTCCGTGGTTACTGCTGTGATGCTTTGGGATATTTTAAGCAAAGAATTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR CAA 90 bp TATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGTATCCCAAGGCTTGCTaGACAAAGTCCATACGCACT +
Preference number: 5 (lower is better)
Translates to: YVASHSLAPKQLWTTFPKYPKAC*TKSIRT
Trigger: AGTGCGTATGGACTTTGTCAAGCAAGCCTTGGGATA...CTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp ATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGTAAATACACACACAGCAAGCTGTTCAGCTaGCTGAAGGAGCTCACCAAA +
Preference number: 5 (lower is better)
Translates to: ILWPQNNCGQHFPSKYTHSKLFS*LKELTK
Trigger: TTTGGTGAGCTCCTTCAGCAAGCTGAACAGCTTGCT...GTGTGTGTATTTACTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp AGAACAGTCAGTTCTGAAATCCAAAGCAAGAACCAACACACCTTTGTTTTGTTACTCGTGGCTGAGGAGTaGAGCACTCTGTCCAGAGGA +
Preference number: 5 (lower is better)
Translates to: RTVSSEIQSKNQHTFVLLLVAEE*STLSRG
Trigger: TCCTCTGGACAGAGTGCTCAACTCCTCAGCCACGAG...TAACAAAACAAAGGTGTGTTGGTTCTTGCTTTGGATTTCAGAACTGACTGTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR CAA 90 bp AAGCATCACAGCAGTAACCACGGAACTCCTCTGGGCTCCAGTCTGAGTTTACATACCGAAGCAACTTTGTaGATAATAGGCTTTGTGTCA +
Preference number: 5 (lower is better)
Translates to: KHHSSNHGTPLGSSLSLHTEATL*IIGFVS
Trigger: TGACACAAAGCCTATTATCAACAAAGTTGCTTCGGT...ATGTAAACTCAGACTGGAGCCCAGAGGAGTTCCGTGGTTACTGCTGTGATGCTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR CAA 90 bp GATTTACACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACATCTTCAAACAGTCCTTaGTTTTCTGCCACCGAAGCA +
Preference number: 5 (lower is better)
Translates to: DLHTYVASHSLAPKQLWTSSNSP*FSATEA
Trigger: TGCTTCGGTGGCAGAAAACAAAGGACTGTTTGAAGA...TGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTGTAAATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp CACACCTATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTTCTTCAAACAGTCCTTaGTTTTCTGCCACCGAAGCA +
Preference number: 5 (lower is better)
Translates to: HTYVASHSLAPKQLWTTFSSNSP*FSATEA
Trigger: TGCTTCGGTGGCAGAAAACAAAGGACTGTTTGAAGA...AAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATAGGTGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp TCCCAAGTAAATACACACACACACACACACACACACACACACACACACACCCCAAGAACTTCTGAGAGGTaGTGTCTGATTTCATCACTG +
Preference number: 5 (lower is better)
Translates to: SQVNTHTHTHTHTHTHTPRTSER*CLISSL
Trigger: CAGTGATGAAATCAGACACAACCTCTCAGAAGTTCT...TGGGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATTTACTTGGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp TATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGGATGGACTTGTTCCTTaGAGCCTCTTAAACTGTGTG +
Preference number: 5 (lower is better)
Translates to: YVASHSLAPKQLWTTFPKDGLVP*SLLNCV
Trigger: CACACAGTTTAAGAGGCTCAAAGGAACAAGTCCATC...CTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp TTTAAAGTCACATTGTCCAGATTTACACACCTATGTAGCCTCTCATTCTCTGGCAGCAAGCTGTTCAGCTaGCTGAAGGAGCTCACCAAA +
Preference number: 5 (lower is better)
Translates to: FKVTLSRFTHLCSLSFSGSKLFS*LKELTK
Trigger: TTTGGTGAGCTCCTTCAGCAAGCTGAACAGCTTGCT...GCCAGAGAATGAGAGGCTACATAGGTGTGTAAATCTGGACAATGTGACTTTAAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp ATTCAACTAGAACAGTCAGTTCTGAAATCCAAAGCAAGAACCAACACACCTTTGACTCGGCTCACTTTCTaGGGTGAAGTCAAGGGCATC +
Preference number: 5 (lower is better)
Translates to: IQLEQSVLKSKARTNTPLTRLTF*GEVKGI
Trigger: GATGCCCTTGACTTCACCCAAGAAAGTGAGCCGAGT...CAAAGGTGTGTTGGTTCTTGCTTTGGATTTCAGAACTGACTGTTCTAGTTGAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR CAA 90 bp ATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGTAAATACACACACTATCCCAAGGCTTGCTaGACAAAGTCCATACGCACT +
Preference number: 5 (lower is better)
Translates to: ILWPQNNCGQHFPSKYTHYPKAC*TKSIRT
Trigger: AGTGCGTATGGACTTTGTCAAGCAAGCCTTGGGATA...GTGTGTGTATTTACTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp CCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGTAAATACGCCACCGAAGCAACTTaGTTGATAATAGGCTTTGTG +
Preference number: 5 (lower is better)
Translates to: PLILWPQNNCGQHFPSKYATEAT*LIIGFV
Trigger: CACAAAGCCTATTATCAACAAAGTTGCTTCGGTGGC...GTATTTACTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp CACAATTCTTTGCTTAAAATATCCCAAAGCATCACAGCAGTAACCACGGAACTCTTCTTCAGCCTTTCTTaGTTAGACTGTGGGGCGCTG +
Preference number: 5 (lower is better)
Translates to: HNSLLKISQSITAVTTELFFSLS*LDCGAL
Trigger: CAGCGCCCCACAGTCTAACAAAGAAAGGCTGAAGAA...GAGTTCCGTGGTTACTGCTGTGATGCTTTGGGATATTTTAAGCAAAGAATTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS GCA 90 bp AAGGTCATAAAGCTTCGCTGCCTCTTCAAACAGTCCTTTGTTTTCTaGCACCGAAGCAACTTTGTTGATAATAGGCTTTGTGTCACTGGT +
Preference number: 5 (lower is better)
Translates to: KVIKLRCLFKQSFVF*HRSNFVDNRLCVTG
Trigger: ACCAGTGACACAAAGCCTATTATCAACAAAGTTGCTTCGGTGGCAGAAAACAAAGGACTGTTTGAAGAGGCAGCGAAGCTTTATGACCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp TATGTAGCCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGAAACATGTTTTCTCCTaGACTGTCTTTCTCATCCCT +
Preference number: 5 (lower is better)
Translates to: YVASHSLAPKQLWTTFPKKHVFS*TVFLIP
Trigger: AGGGATGAGAAAGACAGTCAAGGAGAAAACATGTTT...CTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGGCTACATA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp TTTAAAGTCACATTGTCCAGATTTACACACCTATGTAGCCTCTCATTCTCTGGCCACCACATCTGTCATTaGTTTTACCATGGCCCACAT +
Preference number: 5 (lower is better)
Translates to: FKVTLSRFTHLCSLSFSGHHICH*FYHGPH
Trigger: ATGTGGGCCATGGTAAAACAAATGACAGATGTGGTG...GCCAGAGAATGAGAGGCTACATAGGTGTGTAAATCTGGACAATGTGACTTTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp CACAATTCTTTGCTTAAAATATCCCAAAGCATCACAGCAGTAACCACGGAACTCCACCACATCTGTCATTaGTTTTACCATGGCCCACAT +
Preference number: 5 (lower is better)
Translates to: HNSLLKISQSITAVTTELHHICH*FYHGPH
Trigger: ATGTGGGCCATGGTAAAACAAATGACAGATGTGGTG...GAGTTCCGTGGTTACTGCTGTGATGCTTTGGGATATTTTAAGCAAAGAATTGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR CAA 90 bp CCTCTCATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGTAAATACACCGAAGCAACTTTGTaGATAATAGGCTTTGTGTCA +
Preference number: 5 (lower is better)
Translates to: PLILWPQNNCGQHFPSKYTEATL*IIGFVS
Trigger: TGACACAAAGCCTATTATCAACAAAGTTGCTTCGGT...GTATTTACTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAATGAGAGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp ATTCTCTGGCCCCAAAACAACTGTGGACAACATTTCCCAAGTAAATACACACACACCGAAGCAACTTTGTaGATAATAGGCTTTGTGTCA +
Preference number: 5 (lower is better)
Translates to: ILWPQNNCGQHFPSKYTHTEATL*IIGFVS
Trigger: TGACACAAAGCCTATTATCAACAAAGTTGCTTCGGT...GTGTGTGTATTTACTTGGGAAATGTTGTCCACAGTTGTTTTGGGGCCAGAGAAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp TTTAAAGTCACATTGTCCAGATTTACACACCTATGTAGCCTCTCATTCTCTGGCAGTCCACAAACTTATTaGCACTTATTCCCTGAGCTC +
Preference number: 5 (lower is better)
Translates to: FKVTLSRFTHLCSLSFSGSPQTY*HLFPEL
Trigger: GAGCTCAGGGAATAAGTGCAAATAAGTTTGTGGACT...GCCAGAGAATGAGAGGCTACATAGGTGTGTAAATCTGGACAATGTGACTTTAAA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp CCAAAGCAAGAACCAACACACCTTTGTTTTGTTATTGAAATCAGGCAATACTGGGATGGACTTGTTCCTTaGAGCCTCTTAAACTGTGTG +
Preference number: 5 (lower is better)
Translates to: PKQEPTHLCFVIEIRQYWDGLVP*SLLNCV
Trigger: CACACAGTTTAAGAGGCTCAAAGGAACAAGTCCATC...CCAGTATTGCCTGATTTCAATAACAAAACAAAGGTGTGTTGGTTCTTGCTTTGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR CAA 90 bp CAAGAACCAACACACCTTTGTTTTGTTATTGAAATCAGGCAATACTGGGTTAAGTCTTCAAACAGTCCTTaGTTTTCTGCCACCGAAGCA +
Preference number: 5 (lower is better)
Translates to: QEPTHLCFVIEIRQYWVKSSNSP*FSATEA
Trigger: TGCTTCGGTGGCAGAAAACAAAGGACTGTTTGAAGA...CTTAACCCAGTATTGCCTGATTTCAATAACAAAACAAAGGTGTGTTGGTTCTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000211822.2
CDS-3UTR CAA 90 bp AATCATTTAAAGTCACATTGTCCAGATTTACACACCTATGTAGCCTCTCATTCTGCCACCGAAGCAACTTaGTTGATAATAGGCTTTGTG +
Preference number: 5 (lower is better)
Translates to: NHLKSHCPDLHTYVASHSATEAT*LIIGFV
Trigger: CACAAAGCCTATTATCAACAAAGTTGCTTCGGTGGC...AGAATGAGAGGCTACATAGGTGTGTAAATCTGGACAATGTGACTTTAAATGATT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS-3UTR CAA 90 bp AATCATTTAAAGTCACATTGTCCAGATTTACACACCTATGTAGCCTCTCATTCTAAACATGTTTTCTCCTaGACTGTCTTTCTCATCCCT +
Preference number: 5 (lower is better)
Translates to: NHLKSHCPDLHTYVASHSKHVFS*TVFLIP
Trigger: AGGGATGAGAAAGACAGTCAAGGAGAAAACATGTTT...AGAATGAGAGGCTACATAGGTGTGTAAATCTGGACAATGTGACTTTAAATGATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS TCA 72 bp TTCCCCAAGCTGGTGCTGGGCTCGACTGACGACTTGTaGTGCGGCAAGCAGGTCTCCACAGCGCATGCAGTA +
Preference number: 6 (lower is better)
Translates to: FPKLVLGSTDDL*CGKQVSTAHAV
Trigger: TACTGCATGCGCTGTGGAGACCTGCTTGCCGCATCACAAGTCGTCAGTCGAGCCCAGCACCAGCTTGGGGAA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS TCA 72 bp TTGGGTCCGTGGACTCAAACTTGCGGGTGTAGAGCATaGGCAGACGCACAAAGTTCAGCCGTCGCATGCAGG +
Preference number: 6 (lower is better)
Translates to: LGPWTQTCGCRA*ADAQSSAVACR
Trigger: CCTGCATGCGACGGCTGAACTTTGTGCGTCTGCTCATGCTCTACACCCGCAAGTTTGAGTCCACGGACCCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS GCA 72 bp AACCAGCTGGTAAGTCCCAGGCACACCGCCCAGCTGTaGCTGATGCAGATTTCCGAAGACAGTCACAAGGGT +
Preference number: 6 (lower is better)
Translates to: NQLVSPRHTAQL*LMQISEDSHKG
Trigger: ACCCTTGTGACTGTCTTCGGAAATCTGCATCAGGCACAGCTGGGCGGTGTGCCTGGGACTTACCAGCTGGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS CCA 72 bp TGTCCGTGTCCTTCACAGGCTCGAGAGGTTCAAAAGTaGTGGCTGCGCTCAGACTCTCCAGTCTCTGGGAGA +
Preference number: 6 (lower is better)
Translates to: CPCPSQAREVQK*WLRSDSPVSGR
Trigger: TCTCCCAGAGACTGGAGAGTCTGAGCGCAGCCACCACTTTTGAACCTCTCGAGCCTGTGAAGGACACGGACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS GCA 72 bp GTCCTTCACAGGCTCGAGAGGTTCAAAAGTGGTGGCTaGGCTCAGACTCTCCAGTCTCTGGGAGATATGGGA +
Preference number: 6 (lower is better)
Translates to: VLHRLERFKSGG*AQTLQSLGDMG
Trigger: TCCCATATCTCCCAGAGACTGGAGAGTCTGAGCGCAGCCACCACTTTTGAACCTCTCGAGCCTGTGAAGGAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS CAA 90 bp AGTCCATACGCACTTCCACACTGCTCCGGCTCTTCAGGGCGTCAGTaGCTGGTGTCAGCACCACATCTGTCATTTGTTTTACCATGGCCC +
Preference number: 6 (lower is better)
Translates to: SPYALPHCSGSSGRQ*LVSAPHLSFVLPWP
Trigger: GGGCCATGGTAAAACAAATGACAGATGTGGTGCTGACACCAGCAACTGACGCCCTGAAGAGCCGGAGCAGTGTGGAAGTGCGTATGGACT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS CAA 90 bp CTGTACCTCTCCGCAATGGAGAGGGCCATGTTCTTCAGCCTTTCTTaGTTAGACTGTGGGGCGCTGATCTGTGGGACAACAGGGCTTAGC +
Preference number: 6 (lower is better)
Translates to: LYLSAMERAMFFSLS*LDCGALICGTTGLS
Trigger: GCTAAGCCCTGTTGTCCCACAGATCAGCGCCCCACAGTCTAACAAAGAAAGGCTGAAGAACATGGCCCTCTCCATTGCGGAGAGGTACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS TCA 72 bp GCACTTGAAAGTAGAGGAAGGGCTGCTGGTTCACCGTaGAGTGGGACTCGCCATAGTCTTCTAGCAGCTGCT +
Preference number: 6 (lower is better)
Translates to: ALESRGRAAGSP*SGTRHSLLAAA
Trigger: AGCAGCTGCTAGAAGACTATGGCGAGTCCCACTTCACGGTGAACCAGCAGCCCTTCCTCTACTTTCAAGTGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS TCA 72 bp TGGCTTGACTTCGGAGTTGAGAGTCACGGTCTTCAATaGCTCGCTGGGGCCTGGTTGCTGAAGATGGACTTG +
Preference number: 6 (lower is better)
Translates to: WLDFGVESHGLQ*LAGAWLLKMDL
Trigger: CAAGTCCATCTTCAGCAACCAGGCCCCAGCGAGTCATTGAAGACCGTGACTCTCAACTCCGAAGTCAAGCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS GCA 72 bp CGTGTGAGGGTACGGGAACGCAGGCGCTCACCAGCTTaGTGGATCTCCTGTAAATTTCGTTCTACATGTGGA +
Preference number: 6 (lower is better)
Translates to: RVRVRERRRSPA*WISCKFRSTCG
Trigger: TCCACATGTAGAACGAAATTTACAGGAGATCCAGCAAGCTGGTGAGCGCCTGCGTTCCCGTACCCTCACACG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS GCA 72 bp AAGTCAAGGGCATCCTCTCCCGACGCCAGCAGTGTGTaGAGAATCCTTTGTTTCACTTGTTCCCACTCGACC +
Preference number: 6 (lower is better)
Translates to: KSRASSPDASSV*RILCFTCSHST
Trigger: GGTCGAGTGGGAACAAGTGAAACAAAGGATTCTGCACACACTGCTGGCGTCGGGAGAGGATGCCCTTGACTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS CCA 72 bp GTGAGGGTACGGGAACGCAGGCGCTCACCAGCTTGCTaGATCTCCTGTAAATTTCGTTCTACATGTGGAAGC +
Preference number: 6 (lower is better)
Translates to: VRVRERRRSPAC*ISCKFRSTCGS
Trigger: GCTTCCACATGTAGAACGAAATTTACAGGAGATCCAGCAAGCTGGTGAGCGCCTGCGTTCCCGTACCCTCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS CCA 72 bp GTGGCTGCGCTCAGACTCTCCAGTCTCTGGGAGATATaGGATATGTCAAGTCCCCTTGACCCGAGAAGAACT +
Preference number: 6 (lower is better)
Translates to: VAALRLSSLWEI*DMSSPLDPRRT
Trigger: AGTTCTTCTCGGGTCAAGGGGACTTGACATATCCCATATCTCCCAGAGACTGGAGAGTCTGAGCGCAGCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS CCA 72 bp TCAAAAGTGGTGGCTGCGCTCAGACTCTCCAGTCTCTaGGAGATATGGGATATGTCAAGTCCCCTTGACCCG +
Preference number: 6 (lower is better)
Translates to: SKVVAALRLSSL*EIWDMSSPLDP
Trigger: CGGGTCAAGGGGACTTGACATATCCCATATCTCCCAGAGACTGGAGAGTCTGAGCGCAGCCACCACTTTTGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS CCA 72 bp TCCTGGAACCAAGTTTTAAATTCCCCAAGCTGGTGCTaGGCTCGACTGACGACTTGTGATGCGGCAAGCAGG +
Preference number: 6 (lower is better)
Translates to: SWNQVLNSPSWC*ARLTTCDAASR
Trigger: CCTGCTTGCCGCATCACAAGTCGTCAGTCGAGCCCAGCACCAGCTTGGGGAATTTAAAACTTGGTTCCAGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS GCA 72 bp CACTTCCACACTGCTCCGGCTCTTCAGGGCGTCAGTTaGTGGTGTCAGCACCACATCTGTCATTTGTTTTAC +
Preference number: 6 (lower is better)
Translates to: HFHTAPALQGVS*WCQHHICHLFY
Trigger: GTAAAACAAATGACAGATGTGGTGCTGACACCAGCAACTGACGCCCTGAAGAGCCGGAGCAGTGTGGAAGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS GCA 72 bp TACTCCTGGAACCAAGTTTTAAATTCCCCAAGCTGGTaGTGGGCTCGACTGACGACTTGTGATGCGGCAAGC +
Preference number: 6 (lower is better)
Translates to: YSWNQVLNSPSW*WARLTTCDAAS
Trigger: GCTTGCCGCATCACAAGTCGTCAGTCGAGCCCAGCACCAGCTTGGGGAATTTAAAACTTGGTTCCAGGAGTA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS CAA 72 bp GCACTTCCACACTGCTCCGGCTCTTCAGGGCGTCAGTaGCTGGTGTCAGCACCACATCTGTCATTTGTTTTA +
Preference number: 6 (lower is better)
Translates to: ALPHCSGSSGRQ*LVSAPHLSFVL
Trigger: TAAAACAAATGACAGATGTGGTGCTGACACCAGCAACTGACGCCCTGAAGAGCCGGAGCAGTGTGGAAGTGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS CAA 90 bp TTAGACTGTGGGGCGCTGATCTGTGGGACAACAGGGCTTAGCAGCTaGTTCATCAGCTCCAGCACCTTGTCAGCATTCTTAGCAAGGTCA +
Preference number: 6 (lower is better)
Translates to: LDCGALICGTTGLSS*FISSSTLSAFLARS
Trigger: TGACCTTGCTAAGAATGCTGACAAGGTGCTGGAGCTGATGAACAAGCTGCTAAGCCCTGTTGTCCCACAGATCAGCGCCCCACAGTCTAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS TCA 72 bp TTCACTTGTTCCCACTCGACCAGCATTGATTCTCGATaGTACTCCTCAGCCATGCCAAAGGTCCTCTTCCGG +
Preference number: 6 (lower is better)
Translates to: FTCSHSTSIDSR*YSSAMPKVLFR
Trigger: CCGGAAGAGGACCTTTGGCATGGCTGAGGAGTATCATCGAGAATCAATGCTGGTCGAGTGGGAACAAGTGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS CCA 72 bp TTCCACACTGCTCCGGCTCTTCAGGGCGTCAGTTGCTaGTGTCAGCACCACATCTGTCATTTGTTTTACCAT +
Preference number: 6 (lower is better)
Translates to: FHTAPALQGVSC*CQHHICHLFYH
Trigger: ATGGTAAAACAAATGACAGATGTGGTGCTGACACCAGCAACTGACGCCCTGAAGAGCCGGAGCAGTGTGGAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS CCA 72 bp ATGTACTCCTGGAACCAAGTTTTAAATTCCCCAAGCTaGTGCTGGGCTCGACTGACGACTTGTGATGCGGCA +
Preference number: 6 (lower is better)
Translates to: MYSWNQVLNSPS*CWARLTTCDAA
Trigger: TGCCGCATCACAAGTCGTCAGTCGAGCCCAGCACCAGCTTGGGGAATTTAAAACTTGGTTCCAGGAGTACAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS CCA 72 bp ATCCCTGAGGAAGTAAAAGTACTGGAGGGCTTCTCTTaGGTCCGTGGACTCAAACTTGCGGGTGTAGAGCAT +
Preference number: 6 (lower is better)
Translates to: IPEEVKVLEGFS*VRGLKLAGVEH
Trigger: ATGCTCTACACCCGCAAGTTTGAGTCCACGGACCCAAGAGAAGCCCTCCAGTACTTTTACTTCCTCAGGGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS CAA 72 bp CGGTATCATCCCAGCAAAGGTAATCAGGGCTCTGGCTaGACTTCGGAGTTGAGAGTCACGGTCTTCAATGAC +
Preference number: 6 (lower is better)
Translates to: RYHPSKGNQGSG*TSELRVTVFND
Trigger: GTCATTGAAGACCGTGACTCTCAACTCCGAAGTCAAGCCAGAGCCCTGATTACCTTTGCTGGGATGATACCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS CAA 90 bp GCTCTTCAGGGCGTCAGTTGCTGGTGTCAGCACCACATCTGTCATTaGTTTTACCATGGCCCACATGTCAGAAATGCTCTTGTCATCCAG +
Preference number: 6 (lower is better)
Translates to: ALQGVSCWCQHHICH*FYHGPHVRNALVIQ
Trigger: CTGGATGACAAGAGCATTTCTGACATGTGGGCCATGGTAAAACAAATGACAGATGTGGTGCTGACACCAGCAACTGACGCCCTGAAGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS CAA 90 bp TCAATGACTCGCTGGGGCCTGGTTGCTGAAGATGGACTTGTTCCTTaGAGCCTCTTAAACTGTGTGAACAGGATGTTCATGGTGGCGAGA +
Preference number: 6 (lower is better)
Translates to: SMTRWGLVAEDGLVP*SLLNCVNRMFMVAR
Trigger: TCTCGCCACCATGAACATCCTGTTCACACAGTTTAAGAGGCTCAAAGGAACAAGTCCATCTTCAGCAACCAGGCCCCAGCGAGTCATTGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS GCA 72 bp TATAGATATAGATCTGCCGGGCATAGGCCATCTCAATaGTATCCAGAGAGCTTCGCCCAGGGGGATTCACAT +
Preference number: 6 (lower is better)
Translates to: YRYRSAGHRPSQ*YPESFAQGDSH
Trigger: ATGTGAATCCCCCTGGGCGAAGCTCTCTGGATAGCATTGAGATGGCCTATGCCCGGCAGATCTATATCTATA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS CAA 72 bp CGCTGGGGCCTGGTTGCTGAAGATGGACTTGTTCCTTaGAGCCTCTTAAACTGTGTGAACAGGATGTTCATG +
Preference number: 6 (lower is better)
Translates to: RWGLVAEDGLVP*SLLNCVNRMFM
Trigger: CATGAACATCCTGTTCACACAGTTTAAGAGGCTCAAAGGAACAAGTCCATCTTCAGCAACCAGGCCCCAGCG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS CAA 90 bp GTGTGTGCAGAATCCTTTGTTTCACTTGTTCCCACTCGACCAGCATaGATTCTCGATGATACTCCTCAGCCATGCCAAAGGTCCTCTTCC +
Preference number: 6 (lower is better)
Translates to: VCAESFVSLVPTRPA*ILDDTPQPCQRSSS
Trigger: GGAAGAGGACCTTTGGCATGGCTGAGGAGTATCATCGAGAATCAATGCTGGTCGAGTGGGAACAAGTGAAACAAAGGATTCTGCACACAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS TCA 72 bp TCTTATAACTCTGCTCAAGATATCCCAAGGCTTGCTTaGCAAAGTCCATACGCACTTCCACACTGCTCCGGC +
Preference number: 6 (lower is better)
Translates to: SYNSAQDIPRLA*QSPYALPHCSG
Trigger: GCCGGAGCAGTGTGGAAGTGCGTATGGACTTTGTCAAGCAAGCCTTGGGATATCTTGAGCAGAGTTATAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS CAA 72 bp GGCGTCAGTTGCTGGTGTCAGCACCACATCTGTCATTaGTTTTACCATGGCCCACATGTCAGAAATGCTCTT +
Preference number: 6 (lower is better)
Translates to: GVSCWCQHHICH*FYHGPHVRNAL
Trigger: AAGAGCATTTCTGACATGTGGGCCATGGTAAAACAAATGACAGATGTGGTGCTGACACCAGCAACTGACGCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS CAA 90 bp CACAAGGGTGTAATTCTTATAACTCTGCTCAAGATATCCCAAGGCTaGCTTGACAAAGTCCATACGCACTTCCACACTGCTCCGGCTCTT +
Preference number: 6 (lower is better)
Translates to: HKGVILITLLKISQG*LDKVHTHFHTAPAL
Trigger: AAGAGCCGGAGCAGTGTGGAAGTGCGTATGGACTTTGTCAAGCAAGCCTTGGGATATCTTGAGCAGAGTTATAAGAATTACACCCTTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS TCA 72 bp AATGTAGAGTCCACAAACTTATTTGCACTTATTCCCTaGGCTCTGTACCTCTCCGCAATGGAGAGGGCCATG +
Preference number: 6 (lower is better)
Translates to: NVESTNLFALIP*ALYLSAMERAM
Trigger: CATGGCCCTCTCCATTGCGGAGAGGTACAGAGCTCAGGGAATAAGTGCAAATAAGTTTGTGGACTCTACATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS CAA 72 bp GAATCCTTTGTTTCACTTGTTCCCACTCGACCAGCATaGATTCTCGATGATACTCCTCAGCCATGCCAAAGG +
Preference number: 6 (lower is better)
Translates to: ESFVSLVPTRPA*ILDDTPQPCQR
Trigger: CCTTTGGCATGGCTGAGGAGTATCATCGAGAATCAATGCTGGTCGAGTGGGAACAAGTGAAACAAAGGATTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS TCA 72 bp AATCCTTTGTTTCACTTGTTCCCACTCGACCAGCATTaGTTCTCGATGATACTCCTCAGCCATGCCAAAGGT +
Preference number: 6 (lower is better)
Translates to: NPLFHLFPLDQH*FSMILLSHAKG
Trigger: ACCTTTGGCATGGCTGAGGAGTATCATCGAGAATCAATGCTGGTCGAGTGGGAACAAGTGAAACAAAGGATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000212824.2
CDS CCA 72 bp GGAGACAATCTTCTATCCTTGCTGTTCATGTACTCCTaGAACCAAGTTTTAAATTCCCCAAGCTGGTGCTGG +
Preference number: 6 (lower is better)
Translates to: GDNLLSLLFMYS*NQVLNSPSWCW
Trigger: CCAGCACCAGCTTGGGGAATTTAAAACTTGGTTCCAGGAGTACATGAACAGCAAGGATAGAAGATTGTCTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS GCA 72 bp CAAGAGGAGATAGAATGTAGAGTCCACAAACTTATTTaGACTTATTCCCTGAGCTCTGTACCTCTCCGCAAT +
Preference number: 6 (lower is better)
Translates to: QEEIECRVHKLI*TYSLSSVPLRN
Trigger: ATTGCGGAGAGGTACAGAGCTCAGGGAATAAGTGCAAATAAGTTTGTGGACTCTACATTCTATCTCCTCTTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS CAA 72 bp GTAATTCTTATAACTCTGCTCAAGATATCCCAAGGCTaGCTTGACAAAGTCCATACGCACTTCCACACTGCT +
Preference number: 6 (lower is better)
Translates to: VILITLLKISQG*LDKVHTHFHTA
Trigger: AGCAGTGTGGAAGTGCGTATGGACTTTGTCAAGCAAGCCTTGGGATATCTTGAGCAGAGTTATAAGAATTAC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS CAA 90 bp GCCTCTTCAAACAGTCCTTTGTTTTCTGCCACCGAAGCAACTTTGTaGATAATAGGCTTTGTGTCACTGGTAAACTTATCTATAACTCCA +
Preference number: 6 (lower is better)
Translates to: ASSNSPLFSATEATL*IIGFVSLVNLSITP
Trigger: TGGAGTTATAGATAAGTTTACCAGTGACACAAAGCCTATTATCAACAAAGTTGCTTCGGTGGCAGAAAACAAAGGACTGTTTGAAGAGGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS CAA 90 bp GCTGCCTCTTCAAACAGTCCTTTGTTTTCTGCCACCGAAGCAACTTaGTTGATAATAGGCTTTGTGTCACTGGTAAACTTATCTATAACT +
Preference number: 6 (lower is better)
Translates to: AASSNSPLFSATEAT*LIIGFVSLVNLSIT
Trigger: AGTTATAGATAAGTTTACCAGTGACACAAAGCCTATTATCAACAAAGTTGCTTCGGTGGCAGAAAACAAAGGACTGTTTGAAGAGGCAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS CAA 72 bp TCAAACAGTCCTTTGTTTTCTGCCACCGAAGCAACTTaGTTGATAATAGGCTTTGTGTCACTGGTAAACTTA +
Preference number: 6 (lower is better)
Translates to: SNSPLFSATEAT*LIIGFVSLVNL
Trigger: TAAGTTTACCAGTGACACAAAGCCTATTATCAACAAAGTTGCTTCGGTGGCAGAAAACAAAGGACTGTTTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2
CDS CAA 72 bp AGTTTGTTTTCTGTAGCTGGAGACAATCTTCTATCCTaGCTGTTCATGTACTCCTGGAACCAAGTTTTAAAT +
Preference number: 6 (lower is better)
Translates to: SLFSVAGDNLLS*LFMYSWNQVLN
Trigger: ATTTAAAACTTGGTTCCAGGAGTACATGAACAGCAAGGATAGAAGATTGTCTCCAGCTACAGAAAACAAACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000079961.14
ENSMUST00000109547.2
ENSMUST00000211822.2
ENSMUST00000212824.2