Pregenerated sensors for NUP85 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020739Ensembl transcript IDs: ENSMUST00000021085.11, ENSMUST00000140986.3, ENSMUST00000144473.8
Found 68 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS CCA 90 bp | GGACGCGGCACATGCCTGCACAAGAGGGGTTGGCATCAGCTTCTTTaGCTAGCATCTGCCGTGCCTCATCGAGCCGGCCCTGAAGCACCA | + |
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Preference number: 5 (lower is better) Translates to: GRGTCLHKRGWHQLL*LASAVPHRAGPEAP Trigger: TGGTGCTTCAGGGCCGGCTCGATGAGGCACGGCAGATGCTAGCCAAAGAAGCTGATGCCAACCCCTCTTGTGCAGGCATGTGCCGCGTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021085.11 ENSMUST00000144473.8 |
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| CDS CCA 90 bp | TCATCAGGTCCCCAAGGACGCGGCACATGCCTGCACAAGAGGGGTTaGCATCAGCTTCTTTGGCTAGCATCTGCCGTGCCTCATCGAGCC | + |
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Preference number: 5 (lower is better) Translates to: SSGPQGRGTCLHKRG*HQLLWLASAVPHRA Trigger: GGCTCGATGAGGCACGGCAGATGCTAGCCAAAGAAGCTGATGCCAACCCCTCTTGTGCAGGCATGTGCCGCGTCCTTGGGGACCTGATGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021085.11 ENSMUST00000144473.8 |
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| CDS GCA 90 bp | GCCAGTCTCAGCATCTCCACCTTGGTGGTCTCTATGTCGTCATCCTaGAGTCGCTGGGCATCAGGTTCACCACACTCTGGCCTCCCTGAG | + |
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Preference number: 5 (lower is better) Translates to: ASLSISTLVVSMSSS*SRWASGSPHSGLPE Trigger: CTCAGGGAGGCCAGAGTGTGGTGAACCTGATGCCCAGCGACTGCAGGATGACGACATAGAGACCACCAAGGTGGAGATGCTGAGACTGGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021085.11 |
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| CDS GCA 90 bp | CCAGAAGTTTTCATGCTTGCTTGGGTTGTCACCGCCCAGGACATCTaGCGACAAACTGTCCACCTCGCACACGTGCAGTCGGACCCAGTC | + |
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Preference number: 5 (lower is better) Translates to: PEVFMLAWVVTAQDI*RQTVHLAHVQSDPV Trigger: GACTGGGTCCGACTGCACGTGTGCGAGGTGGACAGTTTGTCGGCAGATGTCCTGGGCGGTGACAACCCAAGCAAGCATGAAAACTTCTGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021085.11 |
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| CDS CCA 90 bp | AGCATCTCCACCTTGGTGGTCTCTATGTCGTCATCCTGCAGTCGCTaGGCATCAGGTTCACCACACTCTGGCCTCCCTGAGGCCAAGTCT | + |
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Preference number: 5 (lower is better) Translates to: SISTLVVSMSSSCSR*ASGSPHSGLPEAKS Trigger: AGACTTGGCCTCAGGGAGGCCAGAGTGTGGTGAACCTGATGCCCAGCGACTGCAGGATGACGACATAGAGACCACCAAGGTGGAGATGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021085.11 |
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| CDS CCA 90 bp | CCCGAGCAAGATTCCGGGCAAGAGCCAGTCTCAGCATCTCCACCTTaGTGGTCTCTATGTCGTCATCCTGCAGTCGCTGGGCATCAGGTT | + |
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Preference number: 5 (lower is better) Translates to: PEQDSGQEPVSASPP*WSLCRHPAVAGHQV Trigger: AACCTGATGCCCAGCGACTGCAGGATGACGACATAGAGACCACCAAGGTGGAGATGCTGAGACTGGCTCTTGCCCGGAATCTTGCTCGGG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021085.11 |
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| CDS CCA 90 bp | GAGCAAGATTCCGGGCAAGAGCCAGTCTCAGCATCTCCACCTTGGTaGTCTCTATGTCGTCATCCTGCAGTCGCTGGGCATCAGGTTCAC | + |
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Preference number: 5 (lower is better) Translates to: EQDSGQEPVSASPPW*SLCRHPAVAGHQVH Trigger: GTGAACCTGATGCCCAGCGACTGCAGGATGACGACATAGAGACCACCAAGGTGGAGATGCTGAGACTGGCTCTTGCCCGGAATCTTGCTC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021085.11 |
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| CDS TCA 90 bp | TCAGAAGCTCCTTCTGCTCCAACAAGGCGGCCTCATCTCCCAGCATaGTCTTGCAGAGAGACTCCAGACGGGGGTTGGCTGCAAATGTGT | + |
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Preference number: 5 (lower is better) Translates to: SEAPSAPTRRPHLPA*SCRETPDGGWLQMC Trigger: ACACATTTGCAGCCAACCCCCGTCTGGAGTCTCTCTGCAAGATCATGCTGGGAGATGAGGCCGCCTTGTTGGAGCAGAAGGAGCTTCTGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021085.11 ENSMUST00000144473.8 |
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| CDS GCA 90 bp | CCTGAAGCACCAGAACAGTCACCAGGTCCCAGAAGTTTTCATGCTTaGTTGGGTTGTCACCGCCCAGGACATCTGCCGACAAACTGTCCA | + |
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Preference number: 5 (lower is better) Translates to: PEAPEQSPGPRSFHA*LGCHRPGHLPTNCP Trigger: TGGACAGTTTGTCGGCAGATGTCCTGGGCGGTGACAACCCAAGCAAGCATGAAAACTTCTGGGACCTGGTGACTGTTCTGGTGCTTCAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021085.11 |
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| CDS CCA 90 bp | AAGCACCAGAACAGTCACCAGGTCCCAGAAGTTTTCATGCTTGCTTaGGTTGTCACCGCCCAGGACATCTGCCGACAAACTGTCCACCTC | + |
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Preference number: 5 (lower is better) Translates to: KHQNSHQVPEVFMLA*VVTAQDICRQTVHL Trigger: GAGGTGGACAGTTTGTCGGCAGATGTCCTGGGCGGTGACAACCCAAGCAAGCATGAAAACTTCTGGGACCTGGTGACTGTTCTGGTGCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021085.11 |
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| CDS CCA 90 bp | GGCTTCACTGTGGGGTTAGAGTACAGCAGCCTCGTCACTAAGAAATaGTACCAGTTGCTCAGAAGCTCCTTCTGCTCCAACAAGGCGGCC | + |
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Preference number: 5 (lower is better) Translates to: GFTVGLEYSSLVTKK*YQLLRSSFCSNKAA Trigger: GGCCGCCTTGTTGGAGCAGAAGGAGCTTCTGAGCAACTGGTACCATTTCTTAGTGACGAGGCTGCTGTACTCTAACCCCACAGTGAAGCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000021085.11 ENSMUST00000140986.3 ENSMUST00000144473.8 |
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| CDS CCA 90 bp | CCAGTGGTTCTGGACTGCTCTCACCTCCAAGAAACATGTCTAGGCTaGACTGGGCATAGAAGTGCAGGTCAATGGGCTTCACTGTGGGGT | + |
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Preference number: 5 (lower is better) Translates to: PVVLDCSHLQETCLG*TGHRSAGQWASLWG Trigger: ACCCCACAGTGAAGCCCATTGACCTGCACTTCTATGCCCAGTCCAGCCTAGACATGTTTCTTGGAGGTGAGAGCAGTCCAGAACCACTGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000021085.11 ENSMUST00000140986.3 ENSMUST00000144473.8 |
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| CDS CCA 90 bp | AGAAGAGAAGCAGCGTCACCAAAGCGCTTCTCCCCGTACAGTCTGTaGAACTCCCGGTACTTTCCCAGAAACGTCAGTCGATCACTGAGC | + |
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Preference number: 5 (lower is better) Translates to: RREAASPKRFSPYSL*NSRYFPRNVSRSLS Trigger: GCTCAGTGATCGACTGACGTTTCTGGGAAAGTACCGGGAGTTCCACAGACTGTACGGGGAGAAGCGCTTTGGTGACGCTGCTTCTCTTCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021085.11 |
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| CDS TCA 90 bp | AGAGATTGTGTGACTGGAGGAGTCTGCAGTGATCCAAAAGGTCTGTaGGGTGAGCTACGAACCACCAGTTGCTCAGGGCGATGCTGCACT | + |
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Preference number: 5 (lower is better) Translates to: RDCVTGGVCSDPKGL*GELRTTSCSGRCCT Trigger: AGTGCAGCATCGCCCTGAGCAACTGGTGGTTCGTAGCTCACCTCACAGACCTTTTGGATCACTGCAGACTCCTCCAGTCACACAATCTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021085.11 ENSMUST00000140986.3 |
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| CDS TCA 90 bp | GCTGCTCACAAATCCTCAGCACCTTCAAGGCTTTCTGCTCTGTGTTaGGAGGAATCCGCTCAATGTGCAGCTCCAAGGAAACTCGGCCTA | + |
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Preference number: 5 (lower is better) Translates to: AAHKSSAPSRLSALC*EESAQCAAPRKLGL Trigger: TAGGCCGAGTTTCCTTGGAGCTGCACATTGAGCGGATTCCTCTCAACACAGAGCAGAAAGCCTTGAAGGTGCTGAGGATTTGTGAGCAGC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000021085.11 ENSMUST00000140986.3 ENSMUST00000144473.8 |
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| CDS GCA 90 bp | AGCCTCGTCACTAAGAAATGGTACCAGTTGCTCAGAAGCTCCTTCTaGTCCAACAAGGCGGCCTCATCTCCCAGCATGATCTTGCAGAGA | + |
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Preference number: 5 (lower is better) Translates to: SLVTKKWYQLLRSSF*SNKAASSPSMILQR Trigger: TCTCTGCAAGATCATGCTGGGAGATGAGGCCGCCTTGTTGGAGCAGAAGGAGCTTCTGAGCAACTGGTACCATTTCTTAGTGACGAGGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021085.11 ENSMUST00000144473.8 |
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| CDS GCA 90 bp | CGAACTCAAAGGCCGCCATCAAGATGTTGTCCAGTGGTTCTGGACTaGTCTCACCTCCAAGAAACATGTCTAGGCTGGACTGGGCATAGA | + |
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Preference number: 5 (lower is better) Translates to: RTQRPPSRCCPVVLD*SHLQETCLGWTGHR Trigger: TCTATGCCCAGTCCAGCCTAGACATGTTTCTTGGAGGTGAGAGCAGTCCAGAACCACTGGACAACATCTTGATGGCGGCCTTTGAGTTCG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000021085.11 ENSMUST00000140986.3 ENSMUST00000144473.8 |
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| CDS GCA 90 bp | AGCCTCGTCACTAAGAAATGGTACCAGTTGCTCAGAAGCTCCTTCTaGTCCAACAAGGCGGCCTCATCTCCCAGCATGATGCTGAGAATG | + |
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Preference number: 5 (lower is better) Translates to: SLVTKKWYQLLRSSF*SNKAASSPSMMLRM Trigger: CATTCTCAGCATCATGCTGGGAGATGAGGCCGCCTTGTTGGAGCAGAAGGAGCTTCTGAGCAACTGGTACCATTTCTTAGTGACGAGGCT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140986.3 |
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| CDS GCA 90 bp | GCCAAGATCTTACAGATGCTTTTAACTTGCTCAGTCATCTGCCGCTaGTCACAAATCCTCAGCACCTTCAAGGCTTTCTGCTCTGTGTTG | + |
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Preference number: 5 (lower is better) Translates to: AKILQMLLTCSVICR*SQILSTFKAFCSVL Trigger: CAACACAGAGCAGAAAGCCTTGAAGGTGCTGAGGATTTGTGAGCAGCGGCAGATGACTGAGCAAGTTAAAAGCATCTGTAAGATCTTGGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000021085.11 ENSMUST00000140986.3 ENSMUST00000144473.8 |
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| CDS TCA 90 bp | CAGCAGGAGGAATTCTCTCATGTTAGAACCAAAATAGAGATTGTGTaGCTGGAGGAGTCTGCAGTGATCCAAAAGGTCTGTGAGGTGAGC | + |
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Preference number: 5 (lower is better) Translates to: QQEEFSHVRTKIEIV*LEESAVIQKVCEVS Trigger: GCTCACCTCACAGACCTTTTGGATCACTGCAGACTCCTCCAGTCACACAATCTCTATTTTGGTTCTAACATGAGAGAATTCCTCCTGCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021085.11 ENSMUST00000140986.3 |
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| CDS TCA 90 bp | ATCTTTCCGTATGATGTAGATAAAAGGGCAGCTCGGCACCTTCTCTaGTTTGCCTGTTTGGTTGAAGGAAGTTTCACACAGAAGCATCTC | + |
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Preference number: 5 (lower is better) Translates to: IFPYDVDKRAARHLL*FACLVEGSFTQKHL Trigger: GAGATGCTTCTGTGTGAAACTTCCTTCAACCAAACAGGCAAATCAGAGAAGGTGCCGAGCTGCCCTTTTATCTACATCATACGGAAAGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021085.11 |
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| CDS TCA 90 bp | AATTCTCTCATGTTAGAACCAAAACTGCACTCTTTGATCACCTGGTaGATGTCGAACTCAAAGGCCGCCATCAAGATGTTGTCCAGTGGT | + |
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Preference number: 5 (lower is better) Translates to: NSLMLEPKLHSLITW*MSNSKAAIKMLSSG Trigger: ACCACTGGACAACATCTTGATGGCGGCCTTTGAGTTCGACATTCACCAGGTGATCAAAGAGTGCAGTTTTGGTTCTAACATGAGAGAATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144473.8 |
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| CDS TCA 90 bp | AGCAATTGCAACCTGATGCATTTCTTCCATACAGGCCCGTATGACTaGACGGTAATTTTTACTCACTCGAACCAATTGAGCTTTCCTGGA | + |
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Preference number: 5 (lower is better) Translates to: SNCNLMHFFHTGPYD*TVIFTHSNQLSFPG Trigger: TCCAGGAAAGCTCAATTGGTTCGAGTGAGTAAAAATTACCGTTCAGTCATACGGGCCTGTATGGAAGAAATGCATCAGGTTGCAATTGCT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021085.11 |
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| CDS CAA 72 bp | CACATGCCTGCACAAGAGGGGTTGGCATCAGCTTCTTaGGCTAGCATCTGCCGTGCCTCATCGAGCCGGCCC | + |
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Preference number: 6 (lower is better) Translates to: HMPAQEGLASAS*ASICRASSSRP Trigger: GGGCCGGCTCGATGAGGCACGGCAGATGCTAGCCAAAGAAGCTGATGCCAACCCCTCTTGTGCAGGCATGTG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021085.11 ENSMUST00000144473.8 |
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| CDS CAA 90 bp | CTCATCAGGTCCCCAAGGACGCGGCACATGCCTGCACAAGAGGGGTaGGCATCAGCTTCTTTGGCTAGCATCTGCCGTGCCTCATCGAGC | + |
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Preference number: 6 (lower is better) Translates to: LIRSPRTRHMPAQEG*ASASLASICRASSS Trigger: GCTCGATGAGGCACGGCAGATGCTAGCCAAAGAAGCTGATGCCAACCCCTCTTGTGCAGGCATGTGCCGCGTCCTTGGGGACCTGATGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021085.11 ENSMUST00000144473.8 |
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| CDS TCA 72 bp | CCTTCTGCTCCAACAAGGCGGCCTCATCTCCCAGCATaGTCTTGCAGAGAGACTCCAGACGGGGGTTGGCTG | + |
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Preference number: 6 (lower is better) Translates to: PSAPTRRPHLPA*SCRETPDGGWL Trigger: CAGCCAACCCCCGTCTGGAGTCTCTCTGCAAGATCATGCTGGGAGATGAGGCCGCCTTGTTGGAGCAGAAGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021085.11 ENSMUST00000144473.8 |
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| CDS CAA 90 bp | GCCCGAGCAAGATTCCGGGCAAGAGCCAGTCTCAGCATCTCCACCTaGGTGGTCTCTATGTCGTCATCCTGCAGTCGCTGGGCATCAGGT | + |
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Preference number: 6 (lower is better) Translates to: ARARFRARASLSIST*VVSMSSSCSRWASG Trigger: ACCTGATGCCCAGCGACTGCAGGATGACGACATAGAGACCACCAAGGTGGAGATGCTGAGACTGGCTCTTGCCCGGAATCTTGCTCGGGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021085.11 |
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| CDS GCA 72 bp | TTCATGCTTGCTTGGGTTGTCACCGCCCAGGACATCTaGCGACAAACTGTCCACCTCGCACACGTGCAGTCG | + |
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Preference number: 6 (lower is better) Translates to: FMLAWVVTAQDI*RQTVHLAHVQS Trigger: CGACTGCACGTGTGCGAGGTGGACAGTTTGTCGGCAGATGTCCTGGGCGGTGACAACCCAAGCAAGCATGAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021085.11 |
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| CDS GCA 72 bp | GCATTGTCCTCATCAGGTCCCCAAGGACGCGGCACATaGCTGCACAAGAGGGGTTGGCATCAGCTTCTTTGG | + |
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Preference number: 6 (lower is better) Translates to: ALSSSGPQGRGT*LHKRGWHQLLW Trigger: CCAAAGAAGCTGATGCCAACCCCTCTTGTGCAGGCATGTGCCGCGTCCTTGGGGACCTGATGAGGACAATGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000021085.11 ENSMUST00000144473.8 |
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| CDS CCA 72 bp | GATTCCGGGCAAGAGCCAGTCTCAGCATCTCCACCTTaGTGGTCTCTATGTCGTCATCCTGCAGTCGCTGGG | + |
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Preference number: 6 (lower is better) Translates to: DSGQEPVSASPP*WSLCRHPAVAG Trigger: CCCAGCGACTGCAGGATGACGACATAGAGACCACCAAGGTGGAGATGCTGAGACTGGCTCTTGCCCGGAATC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021085.11 |
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| CDS GCA 72 bp | GCTTTCTGCTCTGTGTTGAGAGGAATCCGCTCAATGTaGAGCTCCAAGGAAACTCGGCCTAGCTCCGGGCAG | + |
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Preference number: 6 (lower is better) Translates to: AFCSVLRGIRSM*SSKETRPSSGQ Trigger: CTGCCCGGAGCTAGGCCGAGTTTCCTTGGAGCTGCACATTGAGCGGATTCCTCTCAACACAGAGCAGAAAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000021085.11 ENSMUST00000140986.3 ENSMUST00000144473.8 |
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| CDS GCA 72 bp | AGCATCTCCACCTTGGTGGTCTCTATGTCGTCATCCTaGAGTCGCTGGGCATCAGGTTCACCACACTCTGGC | + |
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Preference number: 6 (lower is better) Translates to: SISTLVVSMSSS*SRWASGSPHSG Trigger: GCCAGAGTGTGGTGAACCTGATGCCCAGCGACTGCAGGATGACGACATAGAGACCACCAAGGTGGAGATGCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021085.11 |
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| CDS CCA 72 bp | GCAGCGTCACCAAAGCGCTTCTCCCCGTACAGTCTGTaGAACTCCCGGTACTTTCCCAGAAACGTCAGTCGA | + |
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Preference number: 6 (lower is better) Translates to: AASPKRFSPYSL*NSRYFPRNVSR Trigger: TCGACTGACGTTTCTGGGAAAGTACCGGGAGTTCCACAGACTGTACGGGGAGAAGCGCTTTGGTGACGCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021085.11 |
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| CDS CAA 72 bp | TGCTCCAACAAGGCGGCCTCATCTCCCAGCATGATCTaGCAGAGAGACTCCAGACGGGGGTTGGCTGCAAAT | + |
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Preference number: 6 (lower is better) Translates to: CSNKAASSPSMI*QRDSRRGLAAN Trigger: ATTTGCAGCCAACCCCCGTCTGGAGTCTCTCTGCAAGATCATGCTGGGAGATGAGGCCGCCTTGTTGGAGCA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021085.11 ENSMUST00000144473.8 |
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| CDS CAA 72 bp | AGATTCCGGGCAAGAGCCAGTCTCAGCATCTCCACCTaGGTGGTCTCTATGTCGTCATCCTGCAGTCGCTGG | + |
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Preference number: 6 (lower is better) Translates to: RFRARASLSIST*VVSMSSSCSRW Trigger: CCAGCGACTGCAGGATGACGACATAGAGACCACCAAGGTGGAGATGCTGAGACTGGCTCTTGCCCGGAATCT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021085.11 |
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| CDS CAA 90 bp | ACCAGAACAGTCACCAGGTCCCAGAAGTTTTCATGCTTGCTTGGGTaGTCACCGCCCAGGACATCTGCCGACAAACTGTCCACCTCGCAC | + |
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Preference number: 6 (lower is better) Translates to: TRTVTRSQKFSCLLG*SPPRTSADKLSTSH Trigger: GTGCGAGGTGGACAGTTTGTCGGCAGATGTCCTGGGCGGTGACAACCCAAGCAAGCATGAAAACTTCTGGGACCTGGTGACTGTTCTGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021085.11 |
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| CDS CAA 90 bp | AGCTCCTTCTGCTCCAACAAGGCGGCCTCATCTCCCAGCATGATCTaGCAGAGAGACTCCAGACGGGGGTTGGCTGCAAATGTGTTGTCT | + |
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Preference number: 6 (lower is better) Translates to: SSFCSNKAASSPSMI*QRDSRRGLAANVLS Trigger: AGACAACACATTTGCAGCCAACCCCCGTCTGGAGTCTCTCTGCAAGATCATGCTGGGAGATGAGGCCGCCTTGTTGGAGCAGAAGGAGCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021085.11 ENSMUST00000144473.8 |
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| CDS TCA 72 bp | GGCAGCTCGGCACCTTCTCTGATTTGCCTGTTTGGTTaGAGGAAGTTTCACACAGAAGCATCTCGCCGGGGC | + |
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Preference number: 6 (lower is better) Translates to: GSSAPSLICLFG*RKFHTEASRRG Trigger: GCCCCGGCGAGATGCTTCTGTGTGAAACTTCCTTCAACCAAACAGGCAAATCAGAGAAGGTGCCGAGCTGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021085.11 |
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| CDS TCA 72 bp | GTGACTGGAGGAGTCTGCAGTGATCCAAAAGGTCTGTaGGGTGAGCTACGAACCACCAGTTGCTCAGGGCGA | + |
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Preference number: 6 (lower is better) Translates to: VTGGVCSDPKGL*GELRTTSCSGR Trigger: TCGCCCTGAGCAACTGGTGGTTCGTAGCTCACCTCACAGACCTTTTGGATCACTGCAGACTCCTCCAGTCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000021085.11 ENSMUST00000140986.3 |
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| CDS GCA 72 bp | CCAGAACAGTCACCAGGTCCCAGAAGTTTTCATGCTTaGTTGGGTTGTCACCGCCCAGGACATCTGCCGACA | + |
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Preference number: 6 (lower is better) Translates to: PEQSPGPRSFHA*LGCHRPGHLPT Trigger: TGTCGGCAGATGTCCTGGGCGGTGACAACCCAAGCAAGCATGAAAACTTCTGGGACCTGGTGACTGTTCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021085.11 |
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| CDS GCA 72 bp | AGCACCAGAACAGTCACCAGGTCCCAGAAGTTTTCATaGTTGCTTGGGTTGTCACCGCCCAGGACATCTGCC | + |
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Preference number: 6 (lower is better) Translates to: STRTVTRSQKFS*LLGLSPPRTSA Trigger: GGCAGATGTCCTGGGCGGTGACAACCCAAGCAAGCATGAAAACTTCTGGGACCTGGTGACTGTTCTGGTGCT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021085.11 |
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| CDS CAA 72 bp | GTCACCAGGTCCCAGAAGTTTTCATGCTTGCTTGGGTaGTCACCGCCCAGGACATCTGCCGACAAACTGTCC | + |
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Preference number: 6 (lower is better) Translates to: VTRSQKFSCLLG*SPPRTSADKLS Trigger: GGACAGTTTGTCGGCAGATGTCCTGGGCGGTGACAACCCAAGCAAGCATGAAAACTTCTGGGACCTGGTGAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021085.11 |
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| CDS CAA 72 bp | ACCAGAACAGTCACCAGGTCCCAGAAGTTTTCATGCTaGCTTGGGTTGTCACCGCCCAGGACATCTGCCGAC | + |
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Preference number: 6 (lower is better) Translates to: TRTVTRSQKFSC*LGLSPPRTSAD Trigger: GTCGGCAGATGTCCTGGGCGGTGACAACCCAAGCAAGCATGAAAACTTCTGGGACCTGGTGACTGTTCTGGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021085.11 |
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| CDS CAA 90 bp | GAAGCACCAGAACAGTCACCAGGTCCCAGAAGTTTTCATGCTTGCTaGGGTTGTCACCGCCCAGGACATCTGCCGACAAACTGTCCACCT | + |
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Preference number: 6 (lower is better) Translates to: EAPEQSPGPRSFHAC*GCHRPGHLPTNCPP Trigger: AGGTGGACAGTTTGTCGGCAGATGTCCTGGGCGGTGACAACCCAAGCAAGCATGAAAACTTCTGGGACCTGGTGACTGTTCTGGTGCTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021085.11 |
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| CDS CAA 90 bp | GTGGGGTTAGAGTACAGCAGCCTCGTCACTAAGAAATGGTACCAGTaGCTCAGAAGCTCCTTCTGCTCCAACAAGGCGGCCTCATCTCCC | + |
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Preference number: 6 (lower is better) Translates to: VGLEYSSLVTKKWYQ*LRSSFCSNKAASSP Trigger: GGGAGATGAGGCCGCCTTGTTGGAGCAGAAGGAGCTTCTGAGCAACTGGTACCATTTCTTAGTGACGAGGCTGCTGTACTCTAACCCCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000021085.11 ENSMUST00000140986.3 ENSMUST00000144473.8 |
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| CDS CAA 90 bp | TCCCGGAGGAATCTGTCAGATACGAGTGTGGCAAAGGCAGCATCTTaGGCACGGATGCTCCAGGAGAGTGCTGAGCCCAAGCGGTTATTA | + |
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Preference number: 6 (lower is better) Translates to: SRRNLSDTSVAKAAS*ARMLQESAEPKRLL Trigger: TAATAACCGCTTGGGCTCAGCACTCTCCTGGAGCATCCGTGCCAAAGATGCTGCCTTTGCCACACTCGTATCTGACAGATTCCTCCGGGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021085.11 ENSMUST00000140986.3 |
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| CDS TCA 72 bp | GAGAATCTCACACAGGTTCCAAATGAGCTCCATGGCTaGCAAAATGGAGACCTGGCTGCTGAACTGCCGGCC | + |
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Preference number: 6 (lower is better) Translates to: ENLTQVPNELHG*QNGDLAAELPA Trigger: GGCCGGCAGTTCAGCAGCCAGGTCTCCATTTTGTCAGCCATGGAGCTCATTTGGAACCTGTGTGAGATTCTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021085.11 |
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| CDS TCA 72 bp | CAGTGCTGCCACTTCAGCTCCAACTCTGTCAGTGTCTaGGTATTGCCAGGGCTGAGAATGGGCATTGTCCTC | + |
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Preference number: 6 (lower is better) Translates to: QCCHFSSNSVSV*VLPGLRMGIVL Trigger: GAGGACAATGCCCATTCTCAGCCCTGGCAATACTCAGACACTGACAGAGTTGGAGCTGAAGTGGCAGCACTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021085.11 ENSMUST00000144473.8 |
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| CDS CCA 72 bp | CACAGTAATCCCGGAGGAATCTGTCAGATACGAGTGTaGCAAAGGCAGCATCTTTGGCACGGATGCTCCAGG | + |
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Preference number: 6 (lower is better) Translates to: HSNPGGICQIRV*QRQHLWHGCSR Trigger: CCTGGAGCATCCGTGCCAAAGATGCTGCCTTTGCCACACTCGTATCTGACAGATTCCTCCGGGATTACTGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021085.11 ENSMUST00000140986.3 |
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| CDS CAA 72 bp | GAACAGTCACCAGGTCCCAGAAGTTTTCATGCTTGCTaGGGTTGTCACCGCCCAGGACATCTGCCGACAAAC | + |
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Preference number: 6 (lower is better) Translates to: EQSPGPRSFHAC*GCHRPGHLPTN Trigger: GTTTGTCGGCAGATGTCCTGGGCGGTGACAACCCAAGCAAGCATGAAAACTTCTGGGACCTGGTGACTGTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021085.11 |
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| CDS CAA 72 bp | AATCTGTCAGATACGAGTGTGGCAAAGGCAGCATCTTaGGCACGGATGCTCCAGGAGAGTGCTGAGCCCAAG | + |
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Preference number: 6 (lower is better) Translates to: NLSDTSVAKAAS*ARMLQESAEPK Trigger: CTTGGGCTCAGCACTCTCCTGGAGCATCCGTGCCAAAGATGCTGCCTTTGCCACACTCGTATCTGACAGATT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021085.11 ENSMUST00000140986.3 |
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| CDS GCA 72 bp | AGGCCGCCATCAAGATGTTGTCCAGTGGTTCTGGACTaGTCTCACCTCCAAGAAACATGTCTAGGCTGGACT | + |
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Preference number: 6 (lower is better) Translates to: RPPSRCCPVVLD*SHLQETCLGWT Trigger: AGTCCAGCCTAGACATGTTTCTTGGAGGTGAGAGCAGTCCAGAACCACTGGACAACATCTTGATGGCGGCCT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000021085.11 ENSMUST00000140986.3 ENSMUST00000144473.8 |
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| CDS CCA 72 bp | AACAGTCACCAGGTCCCAGAAGTTTTCATGCTTGCTTaGGTTGTCACCGCCCAGGACATCTGCCGACAAACT | + |
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Preference number: 6 (lower is better) Translates to: NSHQVPEVFMLA*VVTAQDICRQT Trigger: AGTTTGTCGGCAGATGTCCTGGGCGGTGACAACCCAAGCAAGCATGAAAACTTCTGGGACCTGGTGACTGTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021085.11 |
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| CDS CAA 72 bp | CAGAGAGACTCCAGACGGGGGTTGGCTGCAAATGTGTaGTCTTGTAAGTGTCTTTCACACTCCTCACGCCAG | + |
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Preference number: 6 (lower is better) Translates to: QRDSRRGLAANV*SCKCLSHSSRQ Trigger: CTGGCGTGAGGAGTGTGAAAGACACTTACAAGACAACACATTTGCAGCCAACCCCCGTCTGGAGTCTCTCTG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021085.11 ENSMUST00000144473.8 |
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| CDS CAA 90 bp | ATGATCTTGCAGAGAGACTCCAGACGGGGGTTGGCTGCAAATGTGTaGTCTTGTAAGTGTCTTTCACACTCCTCACGCCAGTGCTGCCAC | + |
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Preference number: 6 (lower is better) Translates to: MILQRDSRRGLAANV*SCKCLSHSSRQCCH Trigger: GTGGCAGCACTGGCGTGAGGAGTGTGAAAGACACTTACAAGACAACACATTTGCAGCCAACCCCCGTCTGGAGTCTCTCTGCAAGATCAT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021085.11 ENSMUST00000144473.8 |
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| CDS CAA 90 bp | GCCTCATCTCCCAGCATGATCTTGCAGAGAGACTCCAGACGGGGGTaGGCTGCAAATGTGTTGTCTTGTAAGTGTCTTTCACACTCCTCA | + |
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Preference number: 6 (lower is better) Translates to: ASSPSMILQRDSRRG*AANVLSCKCLSHSS Trigger: TGAGGAGTGTGAAAGACACTTACAAGACAACACATTTGCAGCCAACCCCCGTCTGGAGTCTCTCTGCAAGATCATGCTGGGAGATGAGGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000021085.11 ENSMUST00000144473.8 |
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| CDS GCA 72 bp | GAACTGCCGGCCACTGGCTGGATCTTTAGCAGCAATTaGAACCTGATGCATTTCTTCCATACAGGCCCGTAT | + |
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Preference number: 6 (lower is better) Translates to: ELPATGWIFSSN*NLMHFFHTGPY Trigger: ATACGGGCCTGTATGGAAGAAATGCATCAGGTTGCAATTGCTGCTAAAGATCCAGCCAGTGGCCGGCAGTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021085.11 |
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| CDS GCA 72 bp | ACTAAGAAATGGTACCAGTTGCTCAGAAGCTCCTTCTaGTCCAACAAGGCGGCCTCATCTCCCAGCATGATC | + |
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Preference number: 6 (lower is better) Translates to: TKKWYQLLRSSF*SNKAASSPSMI Trigger: GATCATGCTGGGAGATGAGGCCGCCTTGTTGGAGCAGAAGGAGCTTCTGAGCAACTGGTACCATTTCTTAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000021085.11 ENSMUST00000144473.8 |
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| CDS GCA 72 bp | ACTAAGAAATGGTACCAGTTGCTCAGAAGCTCCTTCTaGTCCAACAAGGCGGCCTCATCTCCCAGCATGATG | + |
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Preference number: 6 (lower is better) Translates to: TKKWYQLLRSSF*SNKAASSPSMM Trigger: CATCATGCTGGGAGATGAGGCCGCCTTGTTGGAGCAGAAGGAGCTTCTGAGCAACTGGTACCATTTCTTAGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000140986.3 |
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| CDS CCA 72 bp | AAAGGGCAGCTCGGCACCTTCTCTGATTTGCCTGTTTaGTTGAAGGAAGTTTCACACAGAAGCATCTCGCCG | + |
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Preference number: 6 (lower is better) Translates to: KGQLGTFSDLPV*LKEVSHRSISP Trigger: CGGCGAGATGCTTCTGTGTGAAACTTCCTTCAACCAAACAGGCAAATCAGAGAAGGTGCCGAGCTGCCCTTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021085.11 |
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| CDS CCA 72 bp | GTGGGGTTAGAGTACAGCAGCCTCGTCACTAAGAAATaGTACCAGTTGCTCAGAAGCTCCTTCTGCTCCAAC | + |
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Preference number: 6 (lower is better) Translates to: VGLEYSSLVTKK*YQLLRSSFCSN Trigger: GTTGGAGCAGAAGGAGCTTCTGAGCAACTGGTACCATTTCTTAGTGACGAGGCTGCTGTACTCTAACCCCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000021085.11 ENSMUST00000140986.3 ENSMUST00000144473.8 |
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| CDS TCA 72 bp | CGGCCACTGGCTGGATCTTTAGCAGCAATTGCAACCTaGTGCATTTCTTCCATACAGGCCCGTATGACTGAA | + |
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Preference number: 6 (lower is better) Translates to: RPLAGSLAAIAT*CISSIQARMTE Trigger: TTCAGTCATACGGGCCTGTATGGAAGAAATGCATCAGGTTGCAATTGCTGCTAAAGATCCAGCCAGTGGCCG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000021085.11 |
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| CDS TCA 72 bp | AAATCCTCAGCACCTTCAAGGCTTTCTGCTCTGTGTTaGGAGGAATCCGCTCAATGTGCAGCTCCAAGGAAA | + |
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Preference number: 6 (lower is better) Translates to: KSSAPSRLSALC*EESAQCAAPRK Trigger: TTTCCTTGGAGCTGCACATTGAGCGGATTCCTCTCAACACAGAGCAGAAAGCCTTGAAGGTGCTGAGGATTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000021085.11 ENSMUST00000140986.3 ENSMUST00000144473.8 |
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| CDS GCA 72 bp | TTACAGATGCTTTTAACTTGCTCAGTCATCTGCCGCTaGTCACAAATCCTCAGCACCTTCAAGGCTTTCTGC | + |
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Preference number: 6 (lower is better) Translates to: LQMLLTCSVICR*SQILSTFKAFC Trigger: GCAGAAAGCCTTGAAGGTGCTGAGGATTTGTGAGCAGCGGCAGATGACTGAGCAAGTTAAAAGCATCTGTAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000021085.11 ENSMUST00000140986.3 ENSMUST00000144473.8 |
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| CDS TCA 72 bp | TATGATGTAGATAAAAGGGCAGCTCGGCACCTTCTCTaGTTTGCCTGTTTGGTTGAAGGAAGTTTCACACAG | + |
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Preference number: 6 (lower is better) Translates to: YDVDKRAARHLL*FACLVEGSFTQ Trigger: CTGTGTGAAACTTCCTTCAACCAAACAGGCAAATCAGAGAAGGTGCCGAGCTGCCCTTTTATCTACATCATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000021085.11 |
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| CDS TCA 72 bp | ATGTTAGAACCAAAACTGCACTCTTTGATCACCTGGTaGATGTCGAACTCAAAGGCCGCCATCAAGATGTTG | + |
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Preference number: 6 (lower is better) Translates to: MLEPKLHSLITW*MSNSKAAIKML Trigger: CAACATCTTGATGGCGGCCTTTGAGTTCGACATTCACCAGGTGATCAAAGAGTGCAGTTTTGGTTCTAACAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000144473.8 |
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| CDS TCA 72 bp | AACCTGATGCATTTCTTCCATACAGGCCCGTATGACTaGACGGTAATTTTTACTCACTCGAACCAATTGAGC | + |
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Preference number: 6 (lower is better) Translates to: NLMHFFHTGPYD*TVIFTHSNQLS Trigger: GCTCAATTGGTTCGAGTGAGTAAAAATTACCGTTCAGTCATACGGGCCTGTATGGAAGAAATGCATCAGGTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021085.11 |
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| CDS TCA 72 bp | TTGCAACCTGATGCATTTCTTCCATACAGGCCCGTATaGCTGAACGGTAATTTTTACTCACTCGAACCAATT | + |
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Preference number: 6 (lower is better) Translates to: LQPDAFLPYRPV*LNGNFYSLEPI Trigger: AATTGGTTCGAGTGAGTAAAAATTACCGTTCAGTCATACGGGCCTGTATGGAAGAAATGCATCAGGTTGCAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000021085.11 |
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