Pregenerated sensors for NUP62CL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000072944Ensembl transcript IDs: ENSMUST00000101212.9, ENSMUST00000124075.2, ENSMUST00000125678.9, ENSMUST00000133780.8, ENSMUST00000154385.8
Found 58 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GATTATACACACAAAATGAACACCAGTGAGCAACTGCCTGGGCAATaGGGTTACTTGACTCTGGGTAAGCATTATTACCGGTGTGTCCAG | + |
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Preference number: 1 (lower is better) Translates to: DYTHKMNTSEQLPGQ*GYLTLGKHYYRCVQ Trigger: CTGGACACACCGGTAATAATGCTTACCCAGAGTCAAGTAACCCCATTGCCCAGGCAGTTGCTCACTGGTGTTCATTTTGTGTGTATAATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| 3UTR CCA 90 bp | GTAAATTCCACTGGAGACTTTATAGGACCCAGCAATTTCTGTGAATaGCCACAAAAACCCAGTAAAGACTGGGTAACGTTCATTTTGGCA | + |
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Preference number: 1 (lower is better) Translates to: VNSTGDFIGPSNFCE*PQKPSKDWVTFILA Trigger: TGCCAAAATGAACGTTACCCAGTCTTTACTGGGTTTTTGTGGCCATTCACAGAAATTGCTGGGTCCTATAAAGTCTCCAGTGGAATTTAC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| 3UTR CCA 90 bp | CGTATTACATTCTGTGAATTCCTGAAAGACACTTGCTGTCATTTATaGTACACTTGGTTTTCATTGCCCATATTGCCCTTAACAGGTAAA | + |
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Preference number: 1 (lower is better) Translates to: RITFCEFLKDTCCHL*YTWFSLPILPLTGK Trigger: TTTACCTGTTAAGGGCAATATGGGCAATGAAAACCAAGTGTACCATAAATGACAGCAAGTGTCTTTCAGGAATTCACAGAATGTAATACG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| 3UTR CAA 90 bp | TGTGAATGGCCACAAAAACCCAGTAAAGACTGGGTAACGTTCATTTaGGCAAACAACTGCCCACAATTAAGCTGCAGTAAGAAGTTGGTG | + |
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Preference number: 2 (lower is better) Translates to: CEWPQKPSKDWVTFI*ANNCPQLSCSKKLV Trigger: CACCAACTTCTTACTGCAGCTTAATTGTGGGCAGTTGTTTGCCAAAATGAACGTTACCCAGTCTTTACTGGGTTTTTGTGGCCATTCACA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| 3UTR-3UTR TCA 90 bp | CCAAGCCAGCATAGGCTACAGAGAGATCTTGATTTAAAAACAAATGCACTGAGGGTTGGTGCATACTGGTaGTCATATGTAGAATCTAAG | + |
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Preference number: 2 (lower is better) Translates to: PSQHRLQRDLDLKTNALRVGAYW*SYVESK Trigger: CTTAGATTCTACATATGATCACCAGTATGCACCAAC...CCTCAGTGCATTTGTTTTTAAATCAAGATCTCTCTGTAGCCTATGCTGGCTTGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| 3UTR-3UTR TCA 90 bp | CCAAGCCAGCATAGGCTACAGAGAGATCTTGATTTAAAAACAAATGCACTGAGGACGTATTACATTCTGTaGATTCCTGAAAGACACTTG | + |
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Preference number: 2 (lower is better) Translates to: PSQHRLQRDLDLKTNALRTYYIL*IPERHL Trigger: CAAGTGTCTTTCAGGAATTCACAGAATGTAATACGT...CCTCAGTGCATTTGTTTTTAAATCAAGATCTCTCTGTAGCCTATGCTGGCTTGG 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| 3UTR-3UTR TCA 90 bp | CTGAAAGACACTTGCTGTCATTTATGGTACACTTGGTTTTCATTGCCCATATTGATTATACACACAAAATaGACACCAGTGAGCAACTGC | + |
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Preference number: 2 (lower is better) Translates to: LKDTCCHLWYTWFSLPILIIHTK*TPVSNC Trigger: GCAGTTGCTCACTGGTGTTCATTTTGTGTGTATAAT...CAATATGGGCAATGAAAACCAAGTGTACCATAAATGACAGCAAGTGTCTTTCAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| 3UTR-3UTR CCA 90 bp | GTTCCAAGCCAGCATAGGCTACAGAGAGATCTTGATTTAAAAACAAATGCACTGCATTTATGGTACACTTaGTTTTCATTGCCCATATTG | + |
|
Preference number: 2 (lower is better) Translates to: VPSQHRLQRDLDLKTNALHLWYT*FSLPIL Trigger: CAATATGGGCAATGAAAACCAAGTGTACCATAAATG...CAGTGCATTTGTTTTTAAATCAAGATCTCTCTGTAGCCTATGCTGGCTTGGAAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| 3UTR-3UTR CCA 90 bp | GTTCCAAGCCAGCATAGGCTACAGAGAGATCTTGATTTAAAAACAAATGCACTGACTTGCTGTCATTTATaGTACACTTGGTTTTCATTG | + |
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Preference number: 2 (lower is better) Translates to: VPSQHRLQRDLDLKTNALTCCHL*YTWFSL Trigger: CAATGAAAACCAAGTGTACCATAAATGACAGCAAGT...CAGTGCATTTGTTTTTAAATCAAGATCTCTCTGTAGCCTATGCTGGCTTGGAAC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| 3UTR CCA 72 bp | CACAAAATGAACACCAGTGAGCAACTGCCTGGGCAATaGGGTTACTTGACTCTGGGTAAGCATTATTACCGG | + |
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Preference number: 3 (lower is better) Translates to: HKMNTSEQLPGQ*GYLTLGKHYYR Trigger: CCGGTAATAATGCTTACCCAGAGTCAAGTAACCCCATTGCCCAGGCAGTTGCTCACTGGTGTTCATTTTGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| 3UTR TCA 72 bp | GTAAGACAGAGATTATACACACAAAATGAACACCAGTaGGCAACTGCCTGGGCAATGGGGTTACTTGACTCT | + |
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Preference number: 3 (lower is better) Translates to: VRQRLYTQNEHQ*ATAWAMGLLDS Trigger: AGAGTCAAGTAACCCCATTGCCCAGGCAGTTGCTCACTGGTGTTCATTTTGTGTGTATAATCTCTGTCTTAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| 3UTR GCA 72 bp | ACGTTCATTTTGGCAAACAACTGCCCACAATTAAGCTaGAGTAAGAAGTTGGTGCATACTGGTGATCATATG | + |
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Preference number: 3 (lower is better) Translates to: TFILANNCPQLS*SKKLVHTGDHM Trigger: CATATGATCACCAGTATGCACCAACTTCTTACTGCAGCTTAATTGTGGGCAGTTGTTTGCCAAAATGAACGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| 3UTR GCA 72 bp | AGTAAAGACTGGGTAACGTTCATTTTGGCAAACAACTaGCCACAATTAAGCTGCAGTAAGAAGTTGGTGCAT | + |
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Preference number: 3 (lower is better) Translates to: SKDWVTFILANN*PQLSCSKKLVH Trigger: ATGCACCAACTTCTTACTGCAGCTTAATTGTGGGCAGTTGTTTGCCAAAATGAACGTTACCCAGTCTTTACT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| 3UTR CCA 72 bp | AATTTCTGTGAATGGCCACAAAAACCCAGTAAAGACTaGGTAACGTTCATTTTGGCAAACAACTGCCCACAA | + |
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Preference number: 3 (lower is better) Translates to: NFCEWPQKPSKD*VTFILANNCPQ Trigger: TTGTGGGCAGTTGTTTGCCAAAATGAACGTTACCCAGTCTTTACTGGGTTTTTGTGGCCATTCACAGAAATT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| 3UTR-3UTR CAA 90 bp | CCAAGCCAGCATAGGCTACAGAGAGATCTTGATTTAAAAACAAATGCACTGAGGATTCCTGAAAGACACTaGCTGTCATTTATGGTACAC | + |
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Preference number: 3 (lower is better) Translates to: PSQHRLQRDLDLKTNALRIPERH*LSFMVH Trigger: GTGTACCATAAATGACAGCAAGTGTCTTTCAGGAAT...CCTCAGTGCATTTGTTTTTAAATCAAGATCTCTCTGTAGCCTATGCTGGCTTGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| 3UTR CCA 72 bp | TTCCTGAAAGACACTTGCTGTCATTTATGGTACACTTaGTTTTCATTGCCCATATTGCCCTTAACAGGTAAA | + |
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Preference number: 3 (lower is better) Translates to: FLKDTCCHLWYT*FSLPILPLTGK Trigger: TTTACCTGTTAAGGGCAATATGGGCAATGAAAACCAAGTGTACCATAAATGACAGCAAGTGTCTTTCAGGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| CDS-3UTR GCA 90 bp | GAATGGCCACAAAAACCCAGTAAAGACTGGGTAACGTTCATTTTGGCAAACAACGCCTTCATGGCTTCTTaGTCCTTGCGACGGTACTCC | + |
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Preference number: 4 (lower is better) Translates to: EWPQKPSKDWVTFILANNAFMAS*SLRRYS Trigger: GGAGTACCGTCGCAAGGAGCAAGAAGCCATGAAGGC...GTTGTTTGCCAAAATGAACGTTACCCAGTCTTTACTGGGTTTTTGTGGCCATTC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| CDS-3UTR TCA 90 bp | GAAAGACACTTGCTGTCATTTATGGTACACTTGGTTTTCATTGCCCATATTGCCGTGGATGAGAGTTCCTaGGAAGCCATGGAGGCAGGA | + |
|
Preference number: 4 (lower is better) Translates to: ERHLLSFMVHLVFIAHIAVDESS*EAMEAG Trigger: TCCTGCCTCCATGGCTTCTCAGGAACTCTCATCCAC...GGCAATATGGGCAATGAAAACCAAGTGTACCATAAATGACAGCAAGTGTCTTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| CDS-3UTR TCA 90 bp | ATAGGACCCAGCAATTTCTGTGAATGGCCACAAAAACCCAGTAAAGACTGGGTAATGTCCTTGAGATCCTaGGACATCCTTTTCAGCTCA | + |
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Preference number: 4 (lower is better) Translates to: IGPSNFCEWPQKPSKDWVMSLRS*DILFSS Trigger: TGAGCTGAAAAGGATGTCTCAGGATCTCAAGGACAT...TACCCAGTCTTTACTGGGTTTTTGTGGCCATTCACAGAAATTGCTGGGTCCTAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| CDS-3UTR GCA 90 bp | GAATGGCCACAAAAACCCAGTAAAGACTGGGTAACGTTCATTTTGGCAAACAACCTCCTCAACTGCATTTaGAACCTCTTCCACCTTCTT | + |
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Preference number: 4 (lower is better) Translates to: EWPQKPSKDWVTFILANNLLNCI*NLFHLL Trigger: AAGAAGGTGGAAGAGGTTGCAAATGCAGTTGAGGAG...GTTGTTTGCCAAAATGAACGTTACCCAGTCTTTACTGGGTTTTTGTGGCCATTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| 3UTR CAA 72 bp | CCACAAAAACCCAGTAAAGACTGGGTAACGTTCATTTaGGCAAACAACTGCCCACAATTAAGCTGCAGTAAG | + |
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Preference number: 4 (lower is better) Translates to: PQKPSKDWVTFI*ANNCPQLSCSK Trigger: CTTACTGCAGCTTAATTGTGGGCAGTTGTTTGCCAAAATGAACGTTACCCAGTCTTTACTGGGTTTTTGTGG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| CDS-3UTR GCA 90 bp | CCAAGCCAGCATAGGCTACAGAGAGATCTTGATTTAAAAACAAATGCACTGAGGTTAAGAGGACCATTCTaGTCCTTCAAAAGCTCCTCT | + |
|
Preference number: 4 (lower is better) Translates to: PSQHRLQRDLDLKTNALRLRGPF*SFKSSS Trigger: AGAGGAGCTTTTGAAGGAGCAGAATGGTCCTCTTAA...CCTCAGTGCATTTGTTTTTAAATCAAGATCTCTCTGTAGCCTATGCTGGCTTGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| CDS-3UTR GCA 90 bp | CTGGACCTTACCCATAATTCAGTGCTGGATATATTATCCAAGAGTGTGGCACATACCAGACTCAATCAGTaGTTGGTTCCAAAGATTGAA | + |
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Preference number: 4 (lower is better) Translates to: LDLTHNSVLDILSKSVAHTRLNQ*LVPKIE Trigger: TTCAATCTTTGGAACCAAGCACTGATTGAGTCTGGT...ATGTGCCACACTCTTGGATAATATATCCAGCACTGAATTATGGGTAAGGTCCAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| CDS-3UTR GCA 90 bp | GAAAGACACTTGCTGTCATTTATGGTACACTTGGTTTTCATTGCCCATATTGCCAGAATTTTGCAGATCTaGTCCAGCTGTTCAGTAGCA | + |
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Preference number: 4 (lower is better) Translates to: ERHLLSFMVHLVFIAHIARILQI*SSCSVA Trigger: TGCTACTGAACAGCTGGAGCAGATCTGCAAAATTCT...GGCAATATGGGCAATGAAAACCAAGTGTACCATAAATGACAGCAAGTGTCTTTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| CDS-3UTR CCA 90 bp | GAAAGACACTTGCTGTCATTTATGGTACACTTGGTTTTCATTGCCCATATTGCCTCCAGTTCCTTCTGCTaGAACAGGATAATATCCAAT | + |
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Preference number: 4 (lower is better) Translates to: ERHLLSFMVHLVFIAHIASSSFC*NRIISN Trigger: ATTGGATATTATCCTGTTCCAGCAGAAGGAACTGGA...GGCAATATGGGCAATGAAAACCAAGTGTACCATAAATGACAGCAAGTGTCTTTC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| CDS-3UTR GCA 90 bp | ACATTCTGTGAATTCCTGAAAGACACTTGCTGTCATTTATGGTACACTTGGTTTGAGCATTCAGAATTTTaGAGATCTGCTCCAGCTGTT | + |
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Preference number: 4 (lower is better) Translates to: TFCEFLKDTCCHLWYTWFEHSEF*RSAPAV Trigger: AACAGCTGGAGCAGATCTGCAAAATTCTGAATGCTC...AAACCAAGTGTACCATAAATGACAGCAAGTGTCTTTCAGGAATTCACAGAATGT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| CDS-3UTR GCA 90 bp | CTGAAAGACACTTGCTGTCATTTATGGTACACTTGGTTTTCATTGCCCATATTGATTCTTGTTCCAACCTaGTCTGATCAATTTTCACTC | + |
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Preference number: 4 (lower is better) Translates to: LKDTCCHLWYTWFSLPILILVPT*SDQFSL Trigger: GAGTGAAAATTGATCAGAGCAGGTTGGAACAAGAAT...CAATATGGGCAATGAAAACCAAGTGTACCATAAATGACAGCAAGTGTCTTTCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| CDS-3UTR TCA 90 bp | CATTTATGGTACACTTGGTTTTCATTGCCCATATTGCCCTTAACAGGTAAAATTCTTGGTTCCAAAGATTaGATTGGTTGGCCTGATAAA | + |
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Preference number: 4 (lower is better) Translates to: HLWYTWFSLPILPLTGKILGSKD*IGWPDK Trigger: TTTATCAGGCCAACCAATTCAATCTTTGGAACCAAG...AATTTTACCTGTTAAGGGCAATATGGGCAATGAAAACCAAGTGTACCATAAATG 37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| CDS TCA 90 bp | AGGCATAGAAGCCACATTGATCAAGCCAGTGTTATTCAGCCAAGGTaGTGCAGGTGGTCTCACATACAGGTTGAAGCCACTTGTAATCGT | + |
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Preference number: 5 (lower is better) Translates to: RHRSHIDQASVIQPR*CRWSHIQVEATCNR Trigger: ACGATTACAAGTGGCTTCAACCTGTATGTGAGACCACCTGCATCACCTTGGCTGAATAACACTGGCTTGATCAATGTGGCTTCTATGCCT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000101212.9 ENSMUST00000125678.9 ENSMUST00000133780.8 ENSMUST00000154385.8 |
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| CDS-3UTR CAA 90 bp | GTTCCAAGCCAGCATAGGCTACAGAGAGATCTTGATTTAAAAACAAATGCACTGAGCCTTCATGGCTTCTaGCTCCTTGCGACGGTACTC | + |
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Preference number: 5 (lower is better) Translates to: VPSQHRLQRDLDLKTNALSLHGF*LLATVL Trigger: GAGTACCGTCGCAAGGAGCAAGAAGCCATGAAGGCT...CAGTGCATTTGTTTTTAAATCAAGATCTCTCTGTAGCCTATGCTGGCTTGGAAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| CDS TCA 90 bp | CGCCATACTCTCCAGAGGACCATATGTCATCACAGGAGTTACTATTaGGTTCACAGTCATGGTAGAAGGCATAGAAGCCACATTGATCAA | + |
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Preference number: 5 (lower is better) Translates to: RHTLQRTICHHRSYY*VHSHGRRHRSHIDQ Trigger: TTGATCAATGTGGCTTCTATGCCTTCTACCATGACTGTGAACTCAATAGTAACTCCTGTGATGACATATGGTCCTCTGGAGAGTATGGCG 44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000101212.9 ENSMUST00000125678.9 ENSMUST00000133780.8 ENSMUST00000154385.8 |
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| CDS-3UTR CAA 90 bp | GTTCCAAGCCAGCATAGGCTACAGAGAGATCTTGATTTAAAAACAAATGCACTGGGTCTCACATACAGGTaGAAGCCACTTGTAATCGTG | + |
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Preference number: 5 (lower is better) Translates to: VPSQHRLQRDLDLKTNALGLTYR*KPLVIV Trigger: CACGATTACAAGTGGCTTCAACCTGTATGTGAGACC...CAGTGCATTTGTTTTTAAATCAAGATCTCTCTGTAGCCTATGCTGGCTTGGAAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| CDS-3UTR CAA 90 bp | GTTCCAAGCCAGCATAGGCTACAGAGAGATCTTGATTTAAAAACAAATGCACTGACTCCTCAACTGCATTaGCAACCTCTTCCACCTTCT | + |
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Preference number: 5 (lower is better) Translates to: VPSQHRLQRDLDLKTNALTPQLH*QPLPPS Trigger: AGAAGGTGGAAGAGGTTGCAAATGCAGTTGAGGAGT...CAGTGCATTTGTTTTTAAATCAAGATCTCTCTGTAGCCTATGCTGGCTTGGAAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| CDS-3UTR CAA 90 bp | GAAAGACACTTGCTGTCATTTATGGTACACTTGGTTTTCATTGCCCATATTGCCGGCATAGAAGCCACATaGATCAAGCCAGTGTTATTC | + |
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Preference number: 5 (lower is better) Translates to: ERHLLSFMVHLVFIAHIAGIEAT*IKPVLF Trigger: GAATAACACTGGCTTGATCAATGTGGCTTCTATGCC...GGCAATATGGGCAATGAAAACCAAGTGTACCATAAATGACAGCAAGTGTCTTTC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| CDS-3UTR CAA 90 bp | CTGGACCTTACCCATAATTCAGTGCTGGATATATTATCCAAGAGTGTGGCACATAGACTCAATCAGTGCTaGGTTCCAAAGATTGAATTG | + |
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Preference number: 5 (lower is better) Translates to: LDLTHNSVLDILSKSVAHRLNQC*VPKIEL Trigger: CAATTCAATCTTTGGAACCAAGCACTGATTGAGTCT...ATGTGCCACACTCTTGGATAATATATCCAGCACTGAATTATGGGTAAGGTCCAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| CDS-3UTR CAA 90 bp | CCAAGCCAGCATAGGCTACAGAGAGATCTTGATTTAAAAACAAATGCACTGAGGGATAATATCCAATTCTaGTTCCAACCTGCTCTGATC | + |
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Preference number: 5 (lower is better) Translates to: PSQHRLQRDLDLKTNALRDNIQF*FQPALI Trigger: GATCAGAGCAGGTTGGAACAAGAATTGGATATTATC...CCTCAGTGCATTTGTTTTTAAATCAAGATCTCTCTGTAGCCTATGCTGGCTTGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| CDS TCA 90 bp | TTCTGCTGGAACAGGATAATATCCAATTCTTGTTCCAACCTGCTCTaGTCAATTTTCACTCTTTCCACTTCGTTGTACAAAAGAGCAATC | + |
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Preference number: 5 (lower is better) Translates to: FCWNRIISNSCSNLL*SIFTLSTSLYKRAI Trigger: GATTGCTCTTTTGTACAACGAAGTGGAAAGAGTGAAAATTGATCAGAGCAGGTTGGAACAAGAATTGGATATTATCCTGTTCCAGCAGAA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000101212.9 ENSMUST00000133780.8 ENSMUST00000154385.8 |
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| CDS GCA 90 bp | ATCTCATACTCCTTATTCACATACATCATATTAAGAGGACCATTCTaGTCCTTCAAAAGCTCCTCTATAGGAGTCAACATTTGTTCCAGT | + |
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Preference number: 5 (lower is better) Translates to: ISYSLFTYIILRGPF*SFKSSSIGVNICSS Trigger: ACTGGAACAAATGTTGACTCCTATAGAGGAGCTTTTGAAGGAGCAGAATGGTCCTCTTAATATGATGTATGTGAATAAGGAGTATGAGAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101212.9 ENSMUST00000154385.8 |
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| CDS TCA 90 bp | GAGCAATCTCATTACCAGACTCAATCAGTGCTTGGTTCCAAAGATTaGATTGGTTGGCCTGATAAAAATAGTGTTTTTCTTGTTCTTGTA | + |
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Preference number: 5 (lower is better) Translates to: EQSHYQTQSVLGSKD*IGWPDKNSVFLVLV Trigger: TACAAGAACAAGAAAAACACTATTTTTATCAGGCCAACCAATTCAATCTTTGGAACCAAGCACTGATTGAGTCTGGTAATGAGATTGCTC 37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000101212.9 ENSMUST00000133780.8 ENSMUST00000154385.8 |
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| CDS CAA 72 bp | CTTCTTGCTCCTTGCGACGGTACTCCTCAACTGCATTaGCAACCTCTTCCACCTTCTTCTGCATTACGCCTG | + |
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Preference number: 6 (lower is better) Translates to: LLAPCDGTPQLH*QPLPPSSALRL Trigger: CAGGCGTAATGCAGAAGAAGGTGGAAGAGGTTGCAAATGCAGTTGAGGAGTACCGTCGCAAGGAGCAAGAAG 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| CDS GCA 72 bp | CATGGCTTCTTGCTCCTTGCGACGGTACTCCTCAACTaGATTTGCAACCTCTTCCACCTTCTTCTGCATTAC | + |
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Preference number: 6 (lower is better) Translates to: HGFLLLATVLLN*ICNLFHLLLHY Trigger: GTAATGCAGAAGAAGGTGGAAGAGGTTGCAAATGCAGTTGAGGAGTACCGTCGCAAGGAGCAAGAAGCCATG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| CDS CAA 72 bp | TTCAGCCAAGGTGATGCAGGTGGTCTCACATACAGGTaGAAGCCACTTGTAATCGTGGTAGTGGTGTTGGTG | + |
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Preference number: 6 (lower is better) Translates to: FSQGDAGGLTYR*KPLVIVVVVLV Trigger: CACCAACACCACTACCACGATTACAAGTGGCTTCAACCTGTATGTGAGACCACCTGCATCACCTTGGCTGAA 50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000101212.9 ENSMUST00000124075.2 ENSMUST00000125678.9 ENSMUST00000133780.8 ENSMUST00000154385.8 |
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| CDS CAA 90 bp | GGTCTCACATACAGGTTGAAGCCACTTGTAATCGTGGTAGTGGTGTaGGTGGTAACCGTAGTAGTGGTAGTCGTTGAGGTTGTGGATGAG | + |
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Preference number: 6 (lower is better) Translates to: GLTYRLKPLVIVVVV*VVTVVVVVVEVVDE Trigger: CTCATCCACAACCTCAACGACTACCACTACTACGGTTACCACCAACACCACTACCACGATTACAAGTGGCTTCAACCTGTATGTGAGACC 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000101212.9 ENSMUST00000124075.2 ENSMUST00000125678.9 ENSMUST00000133780.8 ENSMUST00000154385.8 |
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| CDS CAA 90 bp | CCAGTGTTATTCAGCCAAGGTGATGCAGGTGGTCTCACATACAGGTaGAAGCCACTTGTAATCGTGGTAGTGGTGTTGGTGGTAACCGTA | + |
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Preference number: 6 (lower is better) Translates to: PVLFSQGDAGGLTYR*KPLVIVVVVLVVTV Trigger: TACGGTTACCACCAACACCACTACCACGATTACAAGTGGCTTCAACCTGTATGTGAGACCACCTGCATCACCTTGGCTGAATAACACTGG 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000101212.9 ENSMUST00000124075.2 ENSMUST00000125678.9 ENSMUST00000133780.8 ENSMUST00000154385.8 |
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| CDS TCA 72 bp | AGCCACATTGATCAAGCCAGTGTTATTCAGCCAAGGTaGTGCAGGTGGTCTCACATACAGGTTGAAGCCACT | + |
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Preference number: 6 (lower is better) Translates to: SHIDQASVIQPR*CRWSHIQVEAT Trigger: AGTGGCTTCAACCTGTATGTGAGACCACCTGCATCACCTTGGCTGAATAACACTGGCTTGATCAATGTGGCT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000101212.9 ENSMUST00000125678.9 ENSMUST00000133780.8 ENSMUST00000154385.8 |
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| CDS CAA 72 bp | TACAGGTTGAAGCCACTTGTAATCGTGGTAGTGGTGTaGGTGGTAACCGTAGTAGTGGTAGTCGTTGAGGTT | + |
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Preference number: 6 (lower is better) Translates to: YRLKPLVIVVVV*VVTVVVVVVEV Trigger: AACCTCAACGACTACCACTACTACGGTTACCACCAACACCACTACCACGATTACAAGTGGCTTCAACCTGTA 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000101212.9 ENSMUST00000124075.2 ENSMUST00000125678.9 ENSMUST00000133780.8 ENSMUST00000154385.8 |
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| CDS CAA 90 bp | GTTACTATTGAGTTCACAGTCATGGTAGAAGGCATAGAAGCCACATaGATCAAGCCAGTGTTATTCAGCCAAGGTGATGCAGGTGGTCTC | + |
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Preference number: 6 (lower is better) Translates to: VTIEFTVMVEGIEAT*IKPVLFSQGDAGGL Trigger: GAGACCACCTGCATCACCTTGGCTGAATAACACTGGCTTGATCAATGTGGCTTCTATGCCTTCTACCATGACTGTGAACTCAATAGTAAC 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000101212.9 ENSMUST00000125678.9 ENSMUST00000133780.8 ENSMUST00000154385.8 |
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| CDS TCA 72 bp | CTCCAGAGGACCATATGTCATCACAGGAGTTACTATTaGGTTCACAGTCATGGTAGAAGGCATAGAAGCCAC | + |
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Preference number: 6 (lower is better) Translates to: LQRTICHHRSYY*VHSHGRRHRSH Trigger: GTGGCTTCTATGCCTTCTACCATGACTGTGAACTCAATAGTAACTCCTGTGATGACATATGGTCCTCTGGAG 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000101212.9 ENSMUST00000125678.9 ENSMUST00000133780.8 ENSMUST00000154385.8 |
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| CDS GCA 72 bp | TCCTCAACTGCATTTGCAACCTCTTCCACCTTCTTCTaGATTACGCCTGAATTAAGGTTAATCCACTGCAGG | + |
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Preference number: 6 (lower is better) Translates to: SSTAFATSSTFF*ITPELRLIHCR Trigger: CCTGCAGTGGATTAACCTTAATTCAGGCGTAATGCAGAAGAAGGTGGAAGAGGTTGCAAATGCAGTTGAGGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| CDS TCA 72 bp | ATTTGCAACCTCTTCCACCTTCTTCTGCATTACGCCTaGATTAAGGTTAATCCACTGCAGGGATTCCATATG | + |
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Preference number: 6 (lower is better) Translates to: ICNLFHLLLHYA*IKVNPLQGFHM Trigger: CATATGGAATCCCTGCAGTGGATTAACCTTAATTCAGGCGTAATGCAGAAGAAGGTGGAAGAGGTTGCAAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000101212.9 |
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| CDS CAA 90 bp | CATTTGTTCCAGTTCCTTCTGCTGGAACAGGATAATATCCAATTCTaGTTCCAACCTGCTCTGATCAATTTTCACTCTTTCCACTTCGTT | + |
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Preference number: 6 (lower is better) Translates to: HLFQFLLLEQDNIQF*FQPALINFHSFHFV Trigger: AACGAAGTGGAAAGAGTGAAAATTGATCAGAGCAGGTTGGAACAAGAATTGGATATTATCCTGTTCCAGCAGAAGGAACTGGAACAAATG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000101212.9 ENSMUST00000133780.8 ENSMUST00000154385.8 |
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| CDS GCA 72 bp | GTACAAAAGAGCAATCTCATTACCAGACTCAATCAGTaGTTGGTTCCAAAGATTGAATTGGTTGGCCTGATA | + |
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Preference number: 6 (lower is better) Translates to: VQKSNLITRLNQ*LVPKIELVGLI Trigger: TATCAGGCCAACCAATTCAATCTTTGGAACCAAGCACTGATTGAGTCTGGTAATGAGATTGCTCTTTTGTAC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000101212.9 ENSMUST00000133780.8 ENSMUST00000154385.8 |
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| CDS CAA 72 bp | CAGTTCCTTCTGCTGGAACAGGATAATATCCAATTCTaGTTCCAACCTGCTCTGATCAATTTTCACTCTTTC | + |
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Preference number: 6 (lower is better) Translates to: QFLLLEQDNIQF*FQPALINFHSF Trigger: GAAAGAGTGAAAATTGATCAGAGCAGGTTGGAACAAGAATTGGATATTATCCTGTTCCAGCAGAAGGAACTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000101212.9 ENSMUST00000133780.8 ENSMUST00000154385.8 |
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| CDS CAA 72 bp | CAAAAGAGCAATCTCATTACCAGACTCAATCAGTGCTaGGTTCCAAAGATTGAATTGGTTGGCCTGATAAAA | + |
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Preference number: 6 (lower is better) Translates to: QKSNLITRLNQC*VPKIELVGLIK Trigger: TTTTATCAGGCCAACCAATTCAATCTTTGGAACCAAGCACTGATTGAGTCTGGTAATGAGATTGCTCTTTTG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000101212.9 ENSMUST00000133780.8 ENSMUST00000154385.8 |
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| CDS GCA 72 bp | TCCTTATTCACATACATCATATTAAGAGGACCATTCTaGTCCTTCAAAAGCTCCTCTATAGGAGTCAACATT | + |
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Preference number: 6 (lower is better) Translates to: SLFTYIILRGPF*SFKSSSIGVNI Trigger: AATGTTGACTCCTATAGAGGAGCTTTTGAAGGAGCAGAATGGTCCTCTTAATATGATGTATGTGAATAAGGA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101212.9 ENSMUST00000154385.8 |
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| CDS GCA 72 bp | CTGAGACATCCTTTTCAGCTCAGCATCTATAATTTCTaGCAATCTGTAAATCATCTCATACTCCTTATTCAC | + |
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Preference number: 6 (lower is better) Translates to: LRHPFQLSIYNF*QSVNHLILLIH Trigger: GTGAATAAGGAGTATGAGATGATTTACAGATTGGCAGAAATTATAGATGCTGAGCTGAAAAGGATGTCTCAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000101212.9 ENSMUST00000154385.8 |
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| CDS CAA 72 bp | ACCAGACTCAATCAGTGCTTGGTTCCAAAGATTGAATaGGTTGGCCTGATAAAAATAGTGTTTTTCTTGTTC | + |
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Preference number: 6 (lower is better) Translates to: TRLNQCLVPKIE*VGLIKIVFFLF Trigger: GAACAAGAAAAACACTATTTTTATCAGGCCAACCAATTCAATCTTTGGAACCAAGCACTGATTGAGTCTGGT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 3 transcripts: ENSMUST00000101212.9 ENSMUST00000133780.8 ENSMUST00000154385.8 |
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| CDS TCA 72 bp | AACAGGATAATATCCAATTCTTGTTCCAACCTGCTCTaGTCAATTTTCACTCTTTCCACTTCGTTGTACAAA | + |
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Preference number: 6 (lower is better) Translates to: NRIISNSCSNLL*SIFTLSTSLYK Trigger: TTTGTACAACGAAGTGGAAAGAGTGAAAATTGATCAGAGCAGGTTGGAACAAGAATTGGATATTATCCTGTT 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000101212.9 ENSMUST00000133780.8 ENSMUST00000154385.8 |
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