RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NUP62 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000109511

Ensembl transcript IDs: ENSMUST00000057195.17, ENSMUST00000207103.2, ENSMUST00000208172.2, ENSMUST00000208626.2

Found 220 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GTAGTACTGGAGTGGCTGAAGGATGAGTTCTGCCACAAGGAGAGCTaGAGCTTGCAAGGGAGCGCTGGATTCACCACTTGCCCTTGTTCT +
Preference number: 1 (lower is better)
Translates to: VVLEWLKDEFCHKES*SLQGSAGFTTCPCS
Trigger: AGAACAAGGGCAAGTGGTGAATCCAGCGCTCCCTTGCAAGCTTCAGCTCTCCTTGTGGCAGAACTCATCCTTCAGCCACTCCAGTACTAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
3UTR-3UTR GCA 90 bp AAGTGGTGCTTTGGTGACTCCACTCTATGTGCCAGAGCCTCTGGAGGACACGGGGAAAGGCAGCAGCCCTaGAACCCAAGGAGCCCCTCC +
Preference number: 2 (lower is better)
Translates to: KWCFGDSTLCARASGGHGERQQP*NPRSPS
Trigger: GGAGGGGCTCCTTGGGTTGCAGGGCTGCTGCCTTTC...CCCGTGTCCTCCAGAGGCTCTGGCACATAGAGTGGAGTCACCAAAGCACCACTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
3UTR CAA 90 bp TTGGTGACTCCACTCTATGTGCCAGAGCCTCTGGAGGACACGGGCTaGACAGGAATTAGAGACGCACAGAAGCCTGTCTCCACCCCAGGT +
Preference number: 2 (lower is better)
Translates to: LVTPLYVPEPLEDTG*TGIRDAQKPVSTPG
Trigger: ACCTGGGGTGGAGACAGGCTTCTGTGCGTCTCTAATTCCTGTCAAGCCCGTGTCCTCCAGAGGCTCTGGCACATAGAGTGGAGTCACCAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
3UTR CAA 90 bp GCGCACAAGATAGGAGTGAGAGGTAGCCAGTGCAAAAGTGGTGCTTaGGTGACTCCACTCTATGTGCCAGAGCCTCTGGAGGACACGGGC +
Preference number: 2 (lower is better)
Translates to: AHKIGVRGSQCKSGA*VTPLYVPEPLEDTG
Trigger: GCCCGTGTCCTCCAGAGGCTCTGGCACATAGAGTGGAGTCACCAAAGCACCACTTTTGCACTGGCTACCTCTCACTCCTATCTTGTGCGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
3UTR-3UTR TCA 90 bp GTGCAAAAGTGGTGCTTTGGTGACTCCACTCTATGTGCCAGAGCCTCTGGAGGATGCCACAAGGAGAGCTaGAGCTTGCAAGGGAGCGCT +
Preference number: 2 (lower is better)
Translates to: VQKWCFGDSTLCARASGGCHKES*SLQGSA
Trigger: AGCGCTCCCTTGCAAGCTTCAGCTCTCCTTGTGGCA...TCCTCCAGAGGCTCTGGCACATAGAGTGGAGTCACCAAAGCACCACTTTTGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
3UTR-3UTR TCA 90 bp TCCACCCTCACAGTAGTACTGGAGTGGCTGAAGGATGAGTTCTGCCACAAGGAGTGGCCGAGAGTTCAGTaGCCTTCACATTGGTCTCCA +
Preference number: 2 (lower is better)
Translates to: STLTVVLEWLKDEFCHKEWPRVQ*PSHWSP
Trigger: TGGAGACCAATGTGAAGGTCACTGAACTCTCGGCCA...CTCCTTGTGGCAGAACTCATCCTTCAGCCACTCCAGTACTACTGTGAGGGTGGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
3UTR-3UTR GCA 90 bp CTCCAGAGCACACAGGTTATATCCATGAACATCATGCCTTTGCAAAACACTTCTGAAAGGCAGCAGCCCTaGAACCCAAGGAGCCCCTCC +
Preference number: 2 (lower is better)
Translates to: LQSTQVISMNIMPLQNTSERQQP*NPRSPS
Trigger: GGAGGGGCTCCTTGGGTTGCAGGGCTGCTGCCTTTC...AGAAGTGTTTTGCAAAGGCATGATGTTCATGGATATAACCTGTGTGCTCTGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
3UTR-3UTR TCA 90 bp GACCACAAAGGCTACAATAGAGTGCAGAGAAATAAAATAGACATGACTGCCAGCTGGAGGACACGGGCTTaGCAGGAATTAGAGACGCAC +
Preference number: 2 (lower is better)
Translates to: DHKGYNRVQRNKIDMTASWRTRA*QELETH
Trigger: GTGCGTCTCTAATTCCTGTCAAGCCCGTGTCCTCCA...GCTGGCAGTCATGTCTATTTTATTTCTCTGCACTCTATTGTAGCCTTTGTGGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
3UTR-3UTR TCA 90 bp AGGGACCACAAAGGCTACAATAGAGTGCAGAGAAATAAAATAGACATGACTGCCTGGCCGAGAGTTCAGTaGCCTTCACATTGGTCTCCA +
Preference number: 2 (lower is better)
Translates to: RDHKGYNRVQRNKIDMTAWPRVQ*PSHWSP
Trigger: TGGAGACCAATGTGAAGGTCACTGAACTCTCGGCCA...GGCAGTCATGTCTATTTTATTTCTCTGCACTCTATTGTAGCCTTTGTGGTCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
3UTR-3UTR GCA 90 bp AGGGACCACAAAGGCTACAATAGAGTGCAGAGAAATAAAATAGACATGACTGCCGTGAGAGGTAGCCAGTaGAAAAGTGGTGCTTTGGTG +
Preference number: 2 (lower is better)
Translates to: RDHKGYNRVQRNKIDMTAVRGSQ*KSGALV
Trigger: CACCAAAGCACCACTTTTGCACTGGCTACCTCTCAC...GGCAGTCATGTCTATTTTATTTCTCTGCACTCTATTGTAGCCTTTGTGGTCCCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
3UTR CAA 90 bp AATAGACATGACTGCCAGCTTCACCACTGTGGATCTAAGATAGGTTaGACACTGGGATATTCAGAAGCAAATCTGCATCCACTTTGGCCT +
Preference number: 2 (lower is better)
Translates to: NRHDCQLHHCGSKIG*TLGYSEANLHPLWP
Trigger: AGGCCAAAGTGGATGCAGATTTGCTTCTGAATATCCCAGTGTCAAACCTATCTTAGATCCACAGTGGTGAAGCTGGCAGTCATGTCTATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
3UTR-3UTR GCA 90 bp CTTCACCACTGTGGATCTAAGATAGGTTTGACACTGGGATATTCAGAAGCAAATGTGAGAGGTAGCCAGTaGAAAAGTGGTGCTTTGGTG +
Preference number: 2 (lower is better)
Translates to: LHHCGSKIGLTLGYSEANVRGSQ*KSGALV
Trigger: CACCAAAGCACCACTTTTGCACTGGCTACCTCTCAC...ATTTGCTTCTGAATATCCCAGTGTCAAACCTATCTTAGATCCACAGTGGTGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
3UTR-3UTR TCA 90 bp GACCACAAAGGCTACAATAGAGTGCAGAGAAATAAAATAGACATGACTGCCAGCCACAGGTTATATCCATaGACATCATGCCTTTGCAAA +
Preference number: 2 (lower is better)
Translates to: DHKGYNRVQRNKIDMTASHRLYP*TSCLCK
Trigger: TTTGCAAAGGCATGATGTTCATGGATATAACCTGTG...GCTGGCAGTCATGTCTATTTTATTTCTCTGCACTCTATTGTAGCCTTTGTGGTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
3UTR-3UTR TCA 90 bp AAAGGCTACAATAGAGTGCAGAGAAATAAAATAGACATGACTGCCAGCTTCACCCACAGGTTATATCCATaGACATCATGCCTTTGCAAA +
Preference number: 2 (lower is better)
Translates to: KGYNRVQRNKIDMTASFTHRLYP*TSCLCK
Trigger: TTTGCAAAGGCATGATGTTCATGGATATAACCTGTG...GGTGAAGCTGGCAGTCATGTCTATTTTATTTCTCTGCACTCTATTGTAGCCTTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
3UTR-3UTR CAA 90 bp ACGCACAGAAGCCTGTCTCCACCCCAGGTGAGTCTCTCGTCTGGAGCACCTATCTCAGTGACCTTCACATaGGTCTCCAGAGCACACAGG +
Preference number: 3 (lower is better)
Translates to: THRSLSPPQVSLSSGAPISVTFT*VSRAHR
Trigger: CCTGTGTGCTCTGGAGACCAATGTGAAGGTCACTGA...GATAGGTGCTCCAGACGAGAGACTCACCTGGGGTGGAGACAGGCTTCTGTGCGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
3UTR TCA 72 bp GAGTGGCTGAAGGATGAGTTCTGCCACAAGGAGAGCTaGAGCTTGCAAGGGAGCGCTGGATTCACCACTTGC +
Preference number: 3 (lower is better)
Translates to: EWLKDEFCHKES*SLQGSAGFTTC
Trigger: GCAAGTGGTGAATCCAGCGCTCCCTTGCAAGCTTCAGCTCTCCTTGTGGCAGAACTCATCCTTCAGCCACTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
3UTR TCA 72 bp CACTCTATGTGCCAGAGCCTCTGGAGGACACGGGCTTaGCAGGAATTAGAGACGCACAGAAGCCTGTCTCCA +
Preference number: 3 (lower is better)
Translates to: HSMCQSLWRTRA*QELETHRSLSP
Trigger: TGGAGACAGGCTTCTGTGCGTCTCTAATTCCTGTCAAGCCCGTGTCCTCCAGAGGCTCTGGCACATAGAGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
3UTR-3UTR CAA 90 bp ACGCACAGAAGCCTGTCTCCACCCCAGGTGAGTCTCTCGTCTGGAGCACCTATCATTCACCACTTGCCCTaGTTCTTTAAATGCTGGCCG +
Preference number: 3 (lower is better)
Translates to: THRSLSPPQVSLSSGAPIIHHLP*FFKCWP
Trigger: CGGCCAGCATTTAAAGAACAAGGGCAAGTGGTGAAT...GATAGGTGCTCCAGACGAGAGACTCACCTGGGGTGGAGACAGGCTTCTGTGCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
3UTR-3UTR CAA 90 bp CCTGCCACAGAAGCGCACAAGATAGGAGTGAGAGGTAGCCAGTGCAAAAGTGGTCTGGAGGACACGGGCTaGACAGGAATTAGAGACGCA +
Preference number: 3 (lower is better)
Translates to: PATEAHKIGVRGSQCKSGLEDTG*TGIRDA
Trigger: TGCGTCTCTAATTCCTGTCAAGCCCGTGTCCTCCAG...ACCACTTTTGCACTGGCTACCTCTCACTCCTATCTTGTGCGCTTCTGTGGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
3UTR CCA 72 bp CTGCCACAAGGAGAGCTGAAGCTTGCAAGGGAGCGCTaGATTCACCACTTGCCCTTGTTCTTTAAATGCTGG +
Preference number: 3 (lower is better)
Translates to: LPQGELKLARER*IHHLPLFFKCW
Trigger: CCAGCATTTAAAGAACAAGGGCAAGTGGTGAATCCAGCGCTCCCTTGCAAGCTTCAGCTCTCCTTGTGGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
3UTR GCA 72 bp ACAGAAGCGCACAAGATAGGAGTGAGAGGTAGCCAGTaGAAAAGTGGTGCTTTGGTGACTCCACTCTATGTG +
Preference number: 3 (lower is better)
Translates to: TEAHKIGVRGSQ*KSGALVTPLYV
Trigger: CACATAGAGTGGAGTCACCAAAGCACCACTTTTGCACTGGCTACCTCTCACTCCTATCTTGTGCGCTTCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
3UTR TCA 72 bp TTGCCCTTGTTCTTTAAATGCTGGCCGAGAGTTCAGTaGCCTTCACATTGGTCTCCAGAGCACACAGGTTAT +
Preference number: 3 (lower is better)
Translates to: LPLFFKCWPRVQ*PSHWSPEHTGY
Trigger: ATAACCTGTGTGCTCTGGAGACCAATGTGAAGGTCACTGAACTCTCGGCCAGCATTTAAAGAACAAGGGCAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp ACGCACAGAAGCCTGTCTCCACCCCAGGTGAGTCTCTCGTCTGGAGCACCTATCTCCTCCACCCTCCTCTaGAGCAGGGCAGAGCTCTGG +
Preference number: 4 (lower is better)
Translates to: THRSLSPPQVSLSSGAPISSTLL*SRAELW
Trigger: CCAGAGCTCTGCCCTGCTGCAGAGGAGGGTGGAGGA...GATAGGTGCTCCAGACGAGAGACTCACCTGGGGTGGAGACAGGCTTCTGTGCGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp ACGCACAGAAGCCTGTCTCCACCCCAGGTGAGTCTCTCGTCTGGAGCACCTATCAGGGGTGGTCGCAGCTaGCTGGGAGGGAGTCCCAAA +
Preference number: 4 (lower is better)
Translates to: THRSLSPPQVSLSSGAPIRGGRS*LGGSPK
Trigger: TTTGGGACTCCCTCCCAGCCAGCTGCGACCACCCCT...GATAGGTGCTCCAGACGAGAGACTCACCTGGGGTGGAGACAGGCTTCTGTGCGT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp ACAGGAATTAGAGACGCACAGAAGCCTGTCTCCACCCCAGGTGAGTCTCTCGTCGGAGGCACCAGGAGCTaGTCCAGGGGCCTTGAGGCT +
Preference number: 4 (lower is better)
Translates to: TGIRDAQKPVSTPGESLVGGTRS*SRGLEA
Trigger: AGCCTCAAGGCCCCTGGAGCAGCTCCTGGTGCCTCC...GACGAGAGACTCACCTGGGGTGGAGACAGGCTTCTGTGCGTCTCTAATTCCTGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp ACAGGAATTAGAGACGCACAGAAGCCTGTCTCCACCCCAGGTGAGTCTCTCGTCTGCGGTCCCAGGCATTaGCCTGTGTGGCCTGCTGCA +
Preference number: 4 (lower is better)
Translates to: TGIRDAQKPVSTPGESLVCGPRH*PVWPAA
Trigger: TGCAGCAGGCCACACAGGTCAATGCCTGGGACCGCA...GACGAGAGACTCACCTGGGGTGGAGACAGGCTTCTGTGCGTCTCTAATTCCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp ACAGGAATTAGAGACGCACAGAAGCCTGTCTCCACCCCAGGTGAGTCTCTCGTCGGTGGCAGCAGTGGGTaGAGCAGCAGCTGGCTGTGT +
Preference number: 4 (lower is better)
Translates to: TGIRDAQKPVSTPGESLVGGSSG*SSSWLC
Trigger: ACACAGCCAGCTGCTGCTGCACCCACTGCTGCCACC...GACGAGAGACTCACCTGGGGTGGAGACAGGCTTCTGTGCGTCTCTAATTCCTGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp TCCACCCTCACAGTAGTACTGGAGTGGCTGAAGGATGAGTTCTGCCACAAGGAGGGAGGCACCAGGAGCTaGTCCAGGGGCCTTGAGGCT +
Preference number: 4 (lower is better)
Translates to: STLTVVLEWLKDEFCHKEGGTRS*SRGLEA
Trigger: AGCCTCAAGGCCCCTGGAGCAGCTCCTGGTGCCTCC...CTCCTTGTGGCAGAACTCATCCTTCAGCCACTCCAGTACTACTGTGAGGGTGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp ACGCACAGAAGCCTGTCTCCACCCCAGGTGAGTCTCTCGTCTGGAGCACCTATCCCTGGTTGGAGGTGCTaGCACTTGAGATGGCATTGG +
Preference number: 4 (lower is better)
Translates to: THRSLSPPQVSLSSGAPIPGWRC*HLRWHW
Trigger: CCAATGCCATCTCAAGTGGCAGCACCTCCAACCAGG...GATAGGTGCTCCAGACGAGAGACTCACCTGGGGTGGAGACAGGCTTCTGTGCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp ACGCACAGAAGCCTGTCTCCACCCCAGGTGAGTCTCTCGTCTGGAGCACCTATCTCCCCTGGTTGGAGGTaGTGCCACTTGAGATGGCAT +
Preference number: 4 (lower is better)
Translates to: THRSLSPPQVSLSSGAPISPGWR*CHLRWH
Trigger: ATGCCATCTCAAGTGGCAGCACCTCCAACCAGGGGA...GATAGGTGCTCCAGACGAGAGACTCACCTGGGGTGGAGACAGGCTTCTGTGCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp ACGCACAGAAGCCTGTCTCCACCCCAGGTGAGTCTCTCGTCTGGAGCACCTATCATCCTTGAGGTCCTGTaGCATGCGCTTGAGCTGAGC +
Preference number: 4 (lower is better)
Translates to: THRSLSPPQVSLSSGAPIILEVL*HALELS
Trigger: GCTCAGCTCAAGCGCATGGCACAGGACCTCAAGGAT...GATAGGTGCTCCAGACGAGAGACTCACCTGGGGTGGAGACAGGCTTCTGTGCGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp ACAGGAATTAGAGACGCACAGAAGCCTGTCTCCACCCCAGGTGAGTCTCTCGTCAGCCAGACAGTGCTGTaGGCTGGGCAGAGCTACCCA +
Preference number: 4 (lower is better)
Translates to: TGIRDAQKPVSTPGESLVSQTVL*AGQSYP
Trigger: TGGGTAGCTCTGCCCAGCCCACAGCACTGTCTGGCT...GACGAGAGACTCACCTGGGGTGGAGACAGGCTTCTGTGCGTCTCTAATTCCTGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp TCCACCCTCACAGTAGTACTGGAGTGGCTGAAGGATGAGTTCTGCCACAAGGAGACCCTGCACTGGTGGTaGCAGCAGTGGGTGCAGCAG +
Preference number: 4 (lower is better)
Translates to: STLTVVLEWLKDEFCHKETLHWW*QQWVQQ
Trigger: CTGCTGCACCCACTGCTGCCACCACCAGTGCAGGGT...CTCCTTGTGGCAGAACTCATCCTTCAGCCACTCCAGTACTACTGTGAGGGTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp TCCACCCTCACAGTAGTACTGGAGTGGCTGAAGGATGAGTTCTGCCACAAGGAGTGGTGGTGCTGGTGGTaGAGGCACCAGGAGCTGCTC +
Preference number: 4 (lower is better)
Translates to: STLTVVLEWLKDEFCHKEWWCWW*RHQELL
Trigger: GAGCAGCTCCTGGTGCCTCCACCACCAGCACCACCA...CTCCTTGTGGCAGAACTCATCCTTCAGCCACTCCAGTACTACTGTGAGGGTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp AAGTGGTGCTTTGGTGACTCCACTCTATGTGCCAGAGCCTCTGGAGGACACGGGATGCACTGCCACTGGTaGATGAGAACCCAGTGGAGC +
Preference number: 4 (lower is better)
Translates to: KWCFGDSTLCARASGGHGMHCHW*MRTQWS
Trigger: GCTCCACTGGGTTCTCATTCACCAGTGGCAGTGCAT...CCCGTGTCCTCCAGAGGCTCTGGCACATAGAGTGGAGTCACCAAAGCACCACTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp AAGTGGTGCTTTGGTGACTCCACTCTATGTGCCAGAGCCTCTGGAGGACACGGGATCCTTGAGGTCCTGTaGCATGCGCTTGAGCTGAGC +
Preference number: 4 (lower is better)
Translates to: KWCFGDSTLCARASGGHGILEVL*HALELS
Trigger: GCTCAGCTCAAGCGCATGGCACAGGACCTCAAGGAT...CCCGTGTCCTCCAGAGGCTCTGGCACATAGAGTGGAGTCACCAAAGCACCACTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp ACGCACAGAAGCCTGTCTCCACCCCAGGTGAGTCTCTCGTCTGGAGCACCTATCGCAGATCTGTTGCAATaGGTCACTGGTGTCTGCAGG +
Preference number: 4 (lower is better)
Translates to: THRSLSPPQVSLSSGAPIADLLQ*VTGVCR
Trigger: CCTGCAGACACCAGTGACCCATTGCAACAGATCTGC...GATAGGTGCTCCAGACGAGAGACTCACCTGGGGTGGAGACAGGCTTCTGTGCGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
3UTR CAA 72 bp CCACTCTATGTGCCAGAGCCTCTGGAGGACACGGGCTaGACAGGAATTAGAGACGCACAGAAGCCTGTCTCC +
Preference number: 4 (lower is better)
Translates to: PLYVPEPLEDTG*TGIRDAQKPVS
Trigger: GGAGACAGGCTTCTGTGCGTCTCTAATTCCTGTCAAGCCCGTGTCCTCCAGAGGCTCTGGCACATAGAGTGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp CCTGCCACAGAAGCGCACAAGATAGGAGTGAGAGGTAGCCAGTGCAAAAGTGGTGGTCTGTGTGGTGAGTaGGAAGAGGCTGGTGGAAGG +
Preference number: 4 (lower is better)
Translates to: PATEAHKIGVRGSQCKSGGLCGE*EEAGGR
Trigger: CCTTCCACCAGCCTCTTCTCACTCACCACACAGACC...ACCACTTTTGCACTGGCTACCTCTCACTCCTATCTTGTGCGCTTCTGTGGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp TCCACCCTCACAGTAGTACTGGAGTGGCTGAAGGATGAGTTCTGCCACAAGGAGTTGGGGTCTGTGTGGTaGGTGAGAAGAGGCTGGTGG +
Preference number: 4 (lower is better)
Translates to: STLTVVLEWLKDEFCHKELGSVW*VRRGWW
Trigger: CCACCAGCCTCTTCTCACTCACCACACAGACCCCAA...CTCCTTGTGGCAGAACTCATCCTTCAGCCACTCCAGTACTACTGTGAGGGTGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp ACAGGAATTAGAGACGCACAGAAGCCTGTCTCCACCCCAGGTGAGTCTCTCGTCATGCACTGCCACTGGTaGATGAGAACCCAGTGGAGC +
Preference number: 4 (lower is better)
Translates to: TGIRDAQKPVSTPGESLVMHCHW*MRTQWS
Trigger: GCTCCACTGGGTTCTCATTCACCAGTGGCAGTGCAT...GACGAGAGACTCACCTGGGGTGGAGACAGGCTTCTGTGCGTCTCTAATTCCTGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp ACGCACAGAAGCCTGTCTCCACCCCAGGTGAGTCTCTCGTCTGGAGCACCTATCCCAGACTCCACTTGTTaGTCAAGCTTTCCAGCTGTG +
Preference number: 4 (lower is better)
Translates to: THRSLSPPQVSLSSGAPIPDSTC*SSFPAV
Trigger: CACAGCTGGAAAGCTTGATCAACAAGTGGAGTCTGG...GATAGGTGCTCCAGACGAGAGACTCACCTGGGGTGGAGACAGGCTTCTGTGCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp GTGCAAAAGTGGTGCTTTGGTGACTCCACTCTATGTGCCAGAGCCTCTGGAGGAACCCTCCGGTGCCGGTaGCAGAAGCAGAGAAGGAAA +
Preference number: 4 (lower is better)
Translates to: VQKWCFGDSTLCARASGGTLRCR*QKQRRK
Trigger: TTTCCTTCTCTGCTTCTGGCACCGGCACCGGAGGGT...TCCTCCAGAGGCTCTGGCACATAGAGTGGAGTCACCAAAGCACCACTTTTGCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp CTGAAGCTTGCAAGGGAGCGCTGGATTCACCACTTGCCCTTGTTCTTTAAATGCGGTGGCAGCAGTGGGTaGAGCAGCAGCTGGCTGTGT +
Preference number: 4 (lower is better)
Translates to: LKLARERWIHHLPLFFKCGGSSG*SSSWLC
Trigger: ACACAGCCAGCTGCTGCTGCACCCACTGCTGCCACC...GCATTTAAAGAACAAGGGCAAGTGGTGAATCCAGCGCTCCCTTGCAAGCTTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp CCTGCCACAGAAGCGCACAAGATAGGAGTGAGAGGTAGCCAGTGCAAAAGTGGTCCCAGCACTAGGAGTTaGTGCAGTTGTCACCGGAGC +
Preference number: 4 (lower is better)
Translates to: PATEAHKIGVRGSQCKSGPSTRS*CSCHRS
Trigger: GCTCCGGTGACAACTGCAGCAACTCCTAGTGCTGGG...ACCACTTTTGCACTGGCTACCTCTCACTCCTATCTTGTGCGCTTCTGTGGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp CTGAAGCTTGCAAGGGAGCGCTGGATTCACCACTTGCCCTTGTTCTTTAAATGCCCAGAGGCTCCAGGCTaGGATGCACTGCCACTGGTG +
Preference number: 4 (lower is better)
Translates to: LKLARERWIHHLPLFFKCPEAPG*DALPLV
Trigger: CACCAGTGGCAGTGCATCCCAGCCTGGAGCCTCTGG...GCATTTAAAGAACAAGGGCAAGTGGTGAATCCAGCGCTCCCTTGCAAGCTTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp CTGAAGCTTGCAAGGGAGCGCTGGATTCACCACTTGCCCTTGTTCTTTAAATGCTGGTGGTGCTGGTGGTaGAGGCACCAGGAGCTGCTC +
Preference number: 4 (lower is better)
Translates to: LKLARERWIHHLPLFFKCWWCWW*RHQELL
Trigger: GAGCAGCTCCTGGTGCCTCCACCACCAGCACCACCA...GCATTTAAAGAACAAGGGCAAGTGGTGAATCCAGCGCTCCCTTGCAAGCTTCAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp CCTGCCACAGAAGCGCACAAGATAGGAGTGAGAGGTAGCCAGTGCAAAAGTGGTTGCATAGGTCATCGCTaGACCTGTGGCAGTCCCAGC +
Preference number: 4 (lower is better)
Translates to: PATEAHKIGVRGSQCKSGCIGHR*TCGSPS
Trigger: GCTGGGACTGCCACAGGTCCAGCGATGACCTATGCA...ACCACTTTTGCACTGGCTACCTCTCACTCCTATCTTGTGCGCTTCTGTGGCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp AAGTGGTGCTTTGGTGACTCCACTCTATGTGCCAGAGCCTCTGGAGGACACGGGGCAGATCTGTTGCAATaGGTCACTGGTGTCTGCAGG +
Preference number: 4 (lower is better)
Translates to: KWCFGDSTLCARASGGHGADLLQ*VTGVCR
Trigger: CCTGCAGACACCAGTGACCCATTGCAACAGATCTGC...CCCGTGTCCTCCAGAGGCTCTGGCACATAGAGTGGAGTCACCAAAGCACCACTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp AAGTGGTGCTTTGGTGACTCCACTCTATGTGCCAGAGCCTCTGGAGGACACGGGGTGTTGTTCCAAAGTTaGATCCTGGGGTCTGTGTGG +
Preference number: 4 (lower is better)
Translates to: KWCFGDSTLCARASGGHGVLFQS*ILGSVW
Trigger: CCACACAGACCCCAGGATTCAACTTTGGAACAACAC...CCCGTGTCCTCCAGAGGCTCTGGCACATAGAGTGGAGTCACCAAAGCACCACTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp GTGCAAAAGTGGTGCTTTGGTGACTCCACTCTATGTGCCAGAGCCTCTGGAGGAATGCACTGCCACTGGTaGATGAGAACCCAGTGGAGC +
Preference number: 4 (lower is better)
Translates to: VQKWCFGDSTLCARASGGMHCHW*MRTQWS
Trigger: GCTCCACTGGGTTCTCATTCACCAGTGGCAGTGCAT...TCCTCCAGAGGCTCTGGCACATAGAGTGGAGTCACCAAAGCACCACTTTTGCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp TCCACCCTCACAGTAGTACTGGAGTGGCTGAAGGATGAGTTCTGCCACAAGGAGGCCATGCGCTTGAGCTaGGCATCAATGTTCTCAGCC +
Preference number: 4 (lower is better)
Translates to: STLTVVLEWLKDEFCHKEAMRLS*ASMFSA
Trigger: GGCTGAGAACATTGATGCTCAGCTCAAGCGCATGGC...CTCCTTGTGGCAGAACTCATCCTTCAGCCACTCCAGTACTACTGTGAGGGTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp ACAGGAATTAGAGACGCACAGAAGCCTGTCTCCACCCCAGGTGAGTCTCTCGTCCCTGTGCCATGCGCTTaGGCTGAGCATCAATGTTCT +
Preference number: 4 (lower is better)
Translates to: TGIRDAQKPVSTPGESLVPVPCA*AEHQCS
Trigger: AGAACATTGATGCTCAGCTCAAGCGCATGGCACAGG...GACGAGAGACTCACCTGGGGTGGAGACAGGCTTCTGTGCGTCTCTAATTCCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp AAAACAAAGAGCATTTTTCTCAACAACCAACCACGGGAAAGGCAGCAGCCCTGCGGGAGAGCCAGACAGTaGTGTGGGCTGGGCAGAGCT +
Preference number: 4 (lower is better)
Translates to: KTKSIFLNNQPRERQQPCGRARQ*CGLGRA
Trigger: AGCTCTGCCCAGCCCACAGCACTGTCTGGCTCTCCC...GCAGGGCTGCTGCCTTTCCCGTGGTTGGTTGTTGAGAAAAATGCTCTTTGTTTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp ACGCACAGAAGCCTGTCTCCACCCCAGGTGAGTCTCTCGTCTGGAGCACCTATCGCTGAAGGTATATGGTaGCACTTTGCTCCTTCACTG +
Preference number: 4 (lower is better)
Translates to: THRSLSPPQVSLSSGAPIAEGIW*HFAPSL
Trigger: CAGTGAAGGAGCAAAGTGGCACCATATACCTTCAGC...GATAGGTGCTCCAGACGAGAGACTCACCTGGGGTGGAGACAGGCTTCTGTGCGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp GTGCAAAAGTGGTGCTTTGGTGACTCCACTCTATGTGCCAGAGCCTCTGGAGGAATCCTTGAGGTCCTGTaGCATGCGCTTGAGCTGAGC +
Preference number: 4 (lower is better)
Translates to: VQKWCFGDSTLCARASGGILEVL*HALELS
Trigger: GCTCAGCTCAAGCGCATGGCACAGGACCTCAAGGAT...TCCTCCAGAGGCTCTGGCACATAGAGTGGAGTCACCAAAGCACCACTTTTGCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp CTGAAGCTTGCAAGGGAGCGCTGGATTCACCACTTGCCCTTGTTCTTTAAATGCGTGAGAAGAGGCTGGTaGAAGGGGTGGTCGCAGCTG +
Preference number: 4 (lower is better)
Translates to: LKLARERWIHHLPLFFKCVRRGW*KGWSQL
Trigger: CAGCTGCGACCACCCCTTCCACCAGCCTCTTCTCAC...GCATTTAAAGAACAAGGGCAAGTGGTGAATCCAGCGCTCCCTTGCAAGCTTCAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp GTGCAAAAGTGGTGCTTTGGTGACTCCACTCTATGTGCCAGAGCCTCTGGAGGAAGTCACCAGAGTGGCTaGTGTGAAGGGAGAGCCAGA +
Preference number: 4 (lower is better)
Translates to: VQKWCFGDSTLCARASGGSHQSG*CEGRAR
Trigger: TCTGGCTCTCCCTTCACACCAGCCACTCTGGTGACT...TCCTCCAGAGGCTCTGGCACATAGAGTGGAGTCACCAAAGCACCACTTTTGCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp ACAGGAATTAGAGACGCACAGAAGCCTGTCTCCACCCCAGGTGAGTCTCTCGTCGCAGATCTGTTGCAATaGGTCACTGGTGTCTGCAGG +
Preference number: 4 (lower is better)
Translates to: TGIRDAQKPVSTPGESLVADLLQ*VTGVCR
Trigger: CCTGCAGACACCAGTGACCCATTGCAACAGATCTGC...GACGAGAGACTCACCTGGGGTGGAGACAGGCTTCTGTGCGTCTCTAATTCCTGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp ACTTGCCCTTGTTCTTTAAATGCTGGCCGAGAGTTCAGTGACCTTCACATTGGTTGCGGTCCCAGGCATTaGCCTGTGTGGCCTGCTGCA +
Preference number: 4 (lower is better)
Translates to: TCPCSLNAGREFSDLHIGCGPRH*PVWPAA
Trigger: TGCAGCAGGCCACACAGGTCAATGCCTGGGACCGCA...ACCAATGTGAAGGTCACTGAACTCTCGGCCAGCATTTAAAGAACAAGGGCAAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp CCTGCCACAGAAGCGCACAAGATAGGAGTGAGAGGTAGCCAGTGCAAAAGTGGTACTTTGCTCCTTCACTaGCTCCTCCAATGGGCTCAG +
Preference number: 4 (lower is better)
Translates to: PATEAHKIGVRGSQCKSGTLLLH*LLQWAQ
Trigger: CTGAGCCCATTGGAGGAGTCAGTGAAGGAGCAAAGT...ACCACTTTTGCACTGGCTACCTCTCACTCCTATCTTGTGCGCTTCTGTGGCAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp GTGCAAAAGTGGTGCTTTGGTGACTCCACTCTATGTGCCAGAGCCTCTGGAGGACCTGTGCCATGCGCTTaGGCTGAGCATCAATGTTCT +
Preference number: 4 (lower is better)
Translates to: VQKWCFGDSTLCARASGGPVPCA*AEHQCS
Trigger: AGAACATTGATGCTCAGCTCAAGCGCATGGCACAGG...TCCTCCAGAGGCTCTGGCACATAGAGTGGAGTCACCAAAGCACCACTTTTGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp CTGAAGCTTGCAAGGGAGCGCTGGATTCACCACTTGCCCTTGTTCTTTAAATGCACCCTCCGGTGCCGGTaGCAGAAGCAGAGAAGGAAA +
Preference number: 4 (lower is better)
Translates to: LKLARERWIHHLPLFFKCTLRCR*QKQRRK
Trigger: TTTCCTTCTCTGCTTCTGGCACCGGCACCGGAGGGT...GCATTTAAAGAACAAGGGCAAGTGGTGAATCCAGCGCTCCCTTGCAAGCTTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp AAAACAAAGAGCATTTTTCTCAACAACCAACCACGGGAAAGGCAGCAGCCCTGCTGCCAAGCCCAAAGCTaGCAGTGTTGGCCGTGGCTG +
Preference number: 4 (lower is better)
Translates to: KTKSIFLNNQPRERQQPCCQAQS*QCWPWL
Trigger: CAGCCACGGCCAACACTGGCAGCTTTGGGCTTGGCA...GCAGGGCTGCTGCCTTTCCCGTGGTTGGTTGTTGAGAAAAATGCTCTTTGTTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp GTGCAAAAGTGGTGCTTTGGTGACTCCACTCTATGTGCCAGAGCCTCTGGAGGAAAAGAGTGTAGACCCTaGACTGGTGGTGGCAGCAGT +
Preference number: 4 (lower is better)
Translates to: VQKWCFGDSTLCARASGGKECRP*TGGGSS
Trigger: ACTGCTGCCACCACCAGTGCAGGGTCTACACTCTTT...TCCTCCAGAGGCTCTGGCACATAGAGTGGAGTCACCAAAGCACCACTTTTGCAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp CTGAAGCTTGCAAGGGAGCGCTGGATTCACCACTTGCCCTTGTTCTTTAAATGCCCCAGCACTAGGAGTTaGTGCAGTTGTCACCGGAGC +
Preference number: 4 (lower is better)
Translates to: LKLARERWIHHLPLFFKCPSTRS*CSCHRS
Trigger: GCTCCGGTGACAACTGCAGCAACTCCTAGTGCTGGG...GCATTTAAAGAACAAGGGCAAGTGGTGAATCCAGCGCTCCCTTGCAAGCTTCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp AAAACAAAGAGCATTTTTCTCAACAACCAACCACGGGAAAGGCAGCAGCCCTGCAGTTGTCACCGGAGCTaGGAGGGAGAGCCCTGTAGC +
Preference number: 4 (lower is better)
Translates to: KTKSIFLNNQPRERQQPCSCHRS*EGEPCS
Trigger: GCTACAGGGCTCTCCCTCCCAGCTCCGGTGACAACT...GCAGGGCTGCTGCCTTTCCCGTGGTTGGTTGTTGAGAAAAATGCTCTTTGTTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp CTGAAGCTTGCAAGGGAGCGCTGGATTCACCACTTGCCCTTGTTCTTTAAATGCTGCATAGGTCATCGCTaGACCTGTGGCAGTCCCAGC +
Preference number: 4 (lower is better)
Translates to: LKLARERWIHHLPLFFKCCIGHR*TCGSPS
Trigger: GCTGGGACTGCCACAGGTCCAGCGATGACCTATGCA...GCATTTAAAGAACAAGGGCAAGTGGTGAATCCAGCGCTCCCTTGCAAGCTTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp CTGAAGCTTGCAAGGGAGCGCTGGATTCACCACTTGCCCTTGTTCTTTAAATGCGTTGCAATGGGTCACTaGTGTCTGCAGGGCCACCAG +
Preference number: 4 (lower is better)
Translates to: LKLARERWIHHLPLFFKCVAMGH*CLQGHQ
Trigger: CTGGTGGCCCTGCAGACACCAGTGACCCATTGCAAC...GCATTTAAAGAACAAGGGCAAGTGGTGAATCCAGCGCTCCCTTGCAAGCTTCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
3UTR CAA 72 bp GAGCTGAAGCTTGCAAGGGAGCGCTGGATTCACCACTaGCCCTTGTTCTTTAAATGCTGGCCGAGAGTTCAG +
Preference number: 4 (lower is better)
Translates to: ELKLARERWIHH*PLFFKCWPRVQ
Trigger: CTGAACTCTCGGCCAGCATTTAAAGAACAAGGGCAAGTGGTGAATCCAGCGCTCCCTTGCAAGCTTCAGCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
3UTR CAA 72 bp ATAGGAGTGAGAGGTAGCCAGTGCAAAAGTGGTGCTTaGGTGACTCCACTCTATGTGCCAGAGCCTCTGGAG +
Preference number: 4 (lower is better)
Translates to: IGVRGSQCKSGA*VTPLYVPEPLE
Trigger: CTCCAGAGGCTCTGGCACATAGAGTGGAGTCACCAAAGCACCACTTTTGCACTGGCTACCTCTCACTCCTAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp AAAACAAAGAGCATTTTTCTCAACAACCAACCACGGGAAAGGCAGCAGCCCTGCACCCTCCGGTGCCGGTaGCAGAAGCAGAGAAGGAAA +
Preference number: 4 (lower is better)
Translates to: KTKSIFLNNQPRERQQPCTLRCR*QKQRRK
Trigger: TTTCCTTCTCTGCTTCTGGCACCGGCACCGGAGGGT...GCAGGGCTGCTGCCTTTCCCGTGGTTGGTTGTTGAGAAAAATGCTCTTTGTTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp CTGAAGCTTGCAAGGGAGCGCTGGATTCACCACTTGCCCTTGTTCTTTAAATGCCCTGGTTGGAGGTGCTaGCACTTGAGATGGCATTGG +
Preference number: 4 (lower is better)
Translates to: LKLARERWIHHLPLFFKCPGWRC*HLRWHW
Trigger: CCAATGCCATCTCAAGTGGCAGCACCTCCAACCAGG...GCATTTAAAGAACAAGGGCAAGTGGTGAATCCAGCGCTCCCTTGCAAGCTTCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp CTGAAGCTTGCAAGGGAGCGCTGGATTCACCACTTGCCCTTGTTCTTTAAATGCTCCCCTGGTTGGAGGTaGTGCCACTTGAGATGGCAT +
Preference number: 4 (lower is better)
Translates to: LKLARERWIHHLPLFFKCSPGWR*CHLRWH
Trigger: ATGCCATCTCAAGTGGCAGCACCTCCAACCAGGGGA...GCATTTAAAGAACAAGGGCAAGTGGTGAATCCAGCGCTCCCTTGCAAGCTTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp GGAATCAAAACAAAGAGCATTTTTCTCAACAACCAACCACGGGAAAGGCAGCAGGGGAGAGCCAGACAGTaGTGTGGGCTGGGCAGAGCT +
Preference number: 4 (lower is better)
Translates to: GIKTKSIFLNNQPRERQQGRARQ*CGLGRA
Trigger: AGCTCTGCCCAGCCCACAGCACTGTCTGGCTCTCCC...CTGCTGCCTTTCCCGTGGTTGGTTGTTGAGAAAAATGCTCTTTGTTTTGATTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp ACAGGAATTAGAGACGCACAGAAGCCTGTCTCCACCCCAGGTGAGTCTCTCGTCGCTGAAGGTATATGGTaGCACTTTGCTCCTTCACTG +
Preference number: 4 (lower is better)
Translates to: TGIRDAQKPVSTPGESLVAEGIW*HFAPSL
Trigger: CAGTGAAGGAGCAAAGTGGCACCATATACCTTCAGC...GACGAGAGACTCACCTGGGGTGGAGACAGGCTTCTGTGCGTCTCTAATTCCTGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp GGTTTGACACTGGGATATTCAGAAGCAAATCTGCATCCACTTTGGCCTCAAAGATCCTCCACCCTCCTCTaGAGCAGGGCAGAGCTCTGG +
Preference number: 4 (lower is better)
Translates to: GLTLGYSEANLHPLWPQRSSTLL*SRAELW
Trigger: CCAGAGCTCTGCCCTGCTGCAGAGGAGGGTGGAGGA...TCTTTGAGGCCAAAGTGGATGCAGATTTGCTTCTGAATATCCCAGTGTCAAACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp GGAATCAAAACAAAGAGCATTTTTCTCAACAACCAACCACGGGAAAGGCAGCAGCCAGAGGCTCCAGGCTaGGATGCACTGCCACTGGTG +
Preference number: 4 (lower is better)
Translates to: GIKTKSIFLNNQPRERQQPEAPG*DALPLV
Trigger: CACCAGTGGCAGTGCATCCCAGCCTGGAGCCTCTGG...CTGCTGCCTTTCCCGTGGTTGGTTGTTGAGAAAAATGCTCTTTGTTTTGATTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp GGTCTCCAGAGCACACAGGTTATATCCATGAACATCATGCCTTTGCAAAACACTCCAGAGGCTCCAGGCTaGGATGCACTGCCACTGGTG +
Preference number: 4 (lower is better)
Translates to: GLQSTQVISMNIMPLQNTPEAPG*DALPLV
Trigger: CACCAGTGGCAGTGCATCCCAGCCTGGAGCCTCTGG...AGTGTTTTGCAAAGGCATGATGTTCATGGATATAACCTGTGTGCTCTGGAGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp GGTCTCCAGAGCACACAGGTTATATCCATGAACATCATGCCTTTGCAAAACACTACCCTGCACTGGTGGTaGCAGCAGTGGGTGCAGCAG +
Preference number: 4 (lower is better)
Translates to: GLQSTQVISMNIMPLQNTTLHWW*QQWVQQ
Trigger: CTGCTGCACCCACTGCTGCCACCACCAGTGCAGGGT...AGTGTTTTGCAAAGGCATGATGTTCATGGATATAACCTGTGTGCTCTGGAGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp AAAACAAAGAGCATTTTTCTCAACAACCAACCACGGGAAAGGCAGCAGCCCTGCGTTGCAATGGGTCACTaGTGTCTGCAGGGCCACCAG +
Preference number: 4 (lower is better)
Translates to: KTKSIFLNNQPRERQQPCVAMGH*CLQGHQ
Trigger: CTGGTGGCCCTGCAGACACCAGTGACCCATTGCAAC...GCAGGGCTGCTGCCTTTCCCGTGGTTGGTTGTTGAGAAAAATGCTCTTTGTTTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp ACTTGCCCTTGTTCTTTAAATGCTGGCCGAGAGTTCAGTGACCTTCACATTGGTGGTCTGTGTGGTGAGTaGGAAGAGGCTGGTGGAAGG +
Preference number: 4 (lower is better)
Translates to: TCPCSLNAGREFSDLHIGGLCGE*EEAGGR
Trigger: CCTTCCACCAGCCTCTTCTCACTCACCACACAGACC...ACCAATGTGAAGGTCACTGAACTCTCGGCCAGCATTTAAAGAACAAGGGCAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp AGGGACCACAAAGGCTACAATAGAGTGCAGAGAAATAAAATAGACATGACTGCCCCACAGAGCCAAGGCTaGAGCCAGAGGCTCCAGGCT +
Preference number: 4 (lower is better)
Translates to: RDHKGYNRVQRNKIDMTAPQSQG*SQRLQA
Trigger: AGCCTGGAGCCTCTGGCTTCAGCCTTGGCTCTGTGG...GGCAGTCATGTCTATTTTATTTCTCTGCACTCTATTGTAGCCTTTGTGGTCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp GACCACAAAGGCTACAATAGAGTGCAGAGAAATAAAATAGACATGACTGCCAGCCCACAGAGCCAAGGCTaGAGCCAGAGGCTCCAGGCT +
Preference number: 4 (lower is better)
Translates to: DHKGYNRVQRNKIDMTASPQSQG*SQRLQA
Trigger: AGCCTGGAGCCTCTGGCTTCAGCCTTGGCTCTGTGG...GCTGGCAGTCATGTCTATTTTATTTCTCTGCACTCTATTGTAGCCTTTGTGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp GACCACAAAGGCTACAATAGAGTGCAGAGAAATAAAATAGACATGACTGCCAGCTGCGGTCCCAGGCATTaGCCTGTGTGGCCTGCTGCA +
Preference number: 4 (lower is better)
Translates to: DHKGYNRVQRNKIDMTASCGPRH*PVWPAA
Trigger: TGCAGCAGGCCACACAGGTCAATGCCTGGGACCGCA...GCTGGCAGTCATGTCTATTTTATTTCTCTGCACTCTATTGTAGCCTTTGTGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp AAAACAAAGAGCATTTTTCTCAACAACCAACCACGGGAAAGGCAGCAGCCCTGCGCCATGCGCTTGAGCTaGGCATCAATGTTCTCAGCC +
Preference number: 4 (lower is better)
Translates to: KTKSIFLNNQPRERQQPCAMRLS*ASMFSA
Trigger: GGCTGAGAACATTGATGCTCAGCTCAAGCGCATGGC...GCAGGGCTGCTGCCTTTCCCGTGGTTGGTTGTTGAGAAAAATGCTCTTTGTTTT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp GACCACAAAGGCTACAATAGAGTGCAGAGAAATAAAATAGACATGACTGCCAGCGGTGGCAGCAGTGGGTaGAGCAGCAGCTGGCTGTGT +
Preference number: 4 (lower is better)
Translates to: DHKGYNRVQRNKIDMTASGGSSG*SSSWLC
Trigger: ACACAGCCAGCTGCTGCTGCACCCACTGCTGCCACC...GCTGGCAGTCATGTCTATTTTATTTCTCTGCACTCTATTGTAGCCTTTGTGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp CTGAAGCTTGCAAGGGAGCGCTGGATTCACCACTTGCCCTTGTTCTTTAAATGCTTTTCCACCTCTCGGTaGAGGCTGGTGATCTTCTCC +
Preference number: 4 (lower is better)
Translates to: LKLARERWIHHLPLFFKCFSTSR*RLVIFS
Trigger: GGAGAAGATCACCAGCCTGCACCGAGAGGTGGAAAA...GCATTTAAAGAACAAGGGCAAGTGGTGAATCCAGCGCTCCCTTGCAAGCTTCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp GACCACAAAGGCTACAATAGAGTGCAGAGAAATAAAATAGACATGACTGCCAGCAGGGGTGGTCGCAGCTaGCTGGGAGGGAGTCCCAAA +
Preference number: 4 (lower is better)
Translates to: DHKGYNRVQRNKIDMTASRGGRS*LGGSPK
Trigger: TTTGGGACTCCCTCCCAGCCAGCTGCGACCACCCCT...GCTGGCAGTCATGTCTATTTTATTTCTCTGCACTCTATTGTAGCCTTTGTGGTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp GGAATCAAAACAAAGAGCATTTTTCTCAACAACCAACCACGGGAAAGGCAGCAGGTGAGAAGAGGCTGGTaGAAGGGGTGGTCGCAGCTG +
Preference number: 4 (lower is better)
Translates to: GIKTKSIFLNNQPRERQQVRRGW*KGWSQL
Trigger: CAGCTGCGACCACCCCTTCCACCAGCCTCTTCTCAC...CTGCTGCCTTTCCCGTGGTTGGTTGTTGAGAAAAATGCTCTTTGTTTTGATTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp AGGGACCACAAAGGCTACAATAGAGTGCAGAGAAATAAAATAGACATGACTGCCACCCTGCACTGGTGGTaGCAGCAGTGGGTGCAGCAG +
Preference number: 4 (lower is better)
Translates to: RDHKGYNRVQRNKIDMTATLHWW*QQWVQQ
Trigger: CTGCTGCACCCACTGCTGCCACCACCAGTGCAGGGT...GGCAGTCATGTCTATTTTATTTCTCTGCACTCTATTGTAGCCTTTGTGGTCCCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp CTCCAGAGCACACAGGTTATATCCATGAACATCATGCCTTTGCAAAACACTTCTTGGTGGTGCTGGTGGTaGAGGCACCAGGAGCTGCTC +
Preference number: 4 (lower is better)
Translates to: LQSTQVISMNIMPLQNTSWWCWW*RHQELL
Trigger: GAGCAGCTCCTGGTGCCTCCACCACCAGCACCACCA...AGAAGTGTTTTGCAAAGGCATGATGTTCATGGATATAACCTGTGTGCTCTGGAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp GGTCTCCAGAGCACACAGGTTATATCCATGAACATCATGCCTTTGCAAAACACTTCATCGCTGGACCTGTaGCAGTCCCAGCTGCTGTGC +
Preference number: 4 (lower is better)
Translates to: GLQSTQVISMNIMPLQNTSSLDL*QSQLLC
Trigger: GCACAGCAGCTGGGACTGCCACAGGTCCAGCGATGA...AGTGTTTTGCAAAGGCATGATGTTCATGGATATAACCTGTGTGCTCTGGAGACC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp ACTTGCCCTTGTTCTTTAAATGCTGGCCGAGAGTTCAGTGACCTTCACATTGGTTGCATAGGTCATCGCTaGACCTGTGGCAGTCCCAGC +
Preference number: 4 (lower is better)
Translates to: TCPCSLNAGREFSDLHIGCIGHR*TCGSPS
Trigger: GCTGGGACTGCCACAGGTCCAGCGATGACCTATGCA...ACCAATGTGAAGGTCACTGAACTCTCGGCCAGCATTTAAAGAACAAGGGCAAGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp CAGAGCACACAGGTTATATCCATGAACATCATGCCTTTGCAAAACACTTCTGATCCACAGAGCCAAGGCTaGAGCCAGAGGCTCCAGGCT +
Preference number: 4 (lower is better)
Translates to: QSTQVISMNIMPLQNTSDPQSQG*SQRLQA
Trigger: AGCCTGGAGCCTCTGGCTTCAGCCTTGGCTCTGTGG...ATCAGAAGTGTTTTGCAAAGGCATGATGTTCATGGATATAACCTGTGTGCTCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp GGTCTCCAGAGCACACAGGTTATATCCATGAACATCATGCCTTTGCAAAACACTCCCTGTAGCACTGGATaGGGCAGGAGCAGCAGCTAT +
Preference number: 4 (lower is better)
Translates to: GLQSTQVISMNIMPLQNTPCSTG*GRSSSY
Trigger: ATAGCTGCTGCTCCTGCCTCATCCAGTGCTACAGGG...AGTGTTTTGCAAAGGCATGATGTTCATGGATATAACCTGTGTGCTCTGGAGACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp CTGAAGCTTGCAAGGGAGCGCTGGATTCACCACTTGCCCTTGTTCTTTAAATGCCCAGACTCCACTTGTTaGTCAAGCTTTCCAGCTGTG +
Preference number: 4 (lower is better)
Translates to: LKLARERWIHHLPLFFKCPDSTC*SSFPAV
Trigger: CACAGCTGGAAAGCTTGATCAACAAGTGGAGTCTGG...GCATTTAAAGAACAAGGGCAAGTGGTGAATCCAGCGCTCCCTTGCAAGCTTCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp GGTCTCCAGAGCACACAGGTTATATCCATGAACATCATGCCTTTGCAAAACACTCCCAGCACTAGGAGTTaGTGCAGTTGTCACCGGAGC +
Preference number: 4 (lower is better)
Translates to: GLQSTQVISMNIMPLQNTPSTRS*CSCHRS
Trigger: GCTCCGGTGACAACTGCAGCAACTCCTAGTGCTGGG...AGTGTTTTGCAAAGGCATGATGTTCATGGATATAACCTGTGTGCTCTGGAGACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp GGTTTGACACTGGGATATTCAGAAGCAAATCTGCATCCACTTTGGCCTCAAAGATGGGTCACTGGTGTCTaGAGGGCCACCAGCCATGTT +
Preference number: 4 (lower is better)
Translates to: GLTLGYSEANLHPLWPQRWVTGV*RATSHV
Trigger: AACATGGCTGGTGGCCCTGCAGACACCAGTGACCCA...TCTTTGAGGCCAAAGTGGATGCAGATTTGCTTCTGAATATCCCAGTGTCAAACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp ACAGGAATTAGAGACGCACAGAAGCCTGTCTCCACCCCAGGTGAGTCTCTCGTCAAGAGAGTCCATGTGTaGATTGAGGATCTTGCAGAT +
Preference number: 4 (lower is better)
Translates to: TGIRDAQKPVSTPGESLVKRVHV*IEDLAD
Trigger: ATCTGCAAGATCCTCAATGCACACATGGACTCTCTT...GACGAGAGACTCACCTGGGGTGGAGACAGGCTTCTGTGCGTCTCTAATTCCTGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp CTCCAGAGCACACAGGTTATATCCATGAACATCATGCCTTTGCAAAACACTTCTGGGCTGTCCCCTGGTTaGAGGTGCTGCCACTTGAGA +
Preference number: 4 (lower is better)
Translates to: LQSTQVISMNIMPLQNTSGLSPG*RCCHLR
Trigger: TCTCAAGTGGCAGCACCTCCAACCAGGGGACAGCCC...AGAAGTGTTTTGCAAAGGCATGATGTTCATGGATATAACCTGTGTGCTCTGGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp GACCACAAAGGCTACAATAGAGTGCAGAGAAATAAAATAGACATGACTGCCAGCAGTTGTCACCGGAGCTaGGAGGGAGAGCCCTGTAGC +
Preference number: 4 (lower is better)
Translates to: DHKGYNRVQRNKIDMTASSCHRS*EGEPCS
Trigger: GCTACAGGGCTCTCCCTCCCAGCTCCGGTGACAACT...GCTGGCAGTCATGTCTATTTTATTTCTCTGCACTCTATTGTAGCCTTTGTGGTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
3UTR CAA 72 bp GACACTGGGATATTCAGAAGCAAATCTGCATCCACTTaGGCCTCAAAGACGTATCAGCAGTCAGTCCCTGCC +
Preference number: 4 (lower is better)
Translates to: DTGIFRSKSAST*ASKTYQQSVPA
Trigger: GGCAGGGACTGACTGCTGATACGTCTTTGAGGCCAAAGTGGATGCAGATTTGCTTCTGAATATCCCAGTGTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp AAAACAAAGAGCATTTTTCTCAACAACCAACCACGGGAAAGGCAGCAGCCCTGCGTGTTGTTCCAAAGTTaGATCCTGGGGTCTGTGTGG +
Preference number: 4 (lower is better)
Translates to: KTKSIFLNNQPRERQQPCVLFQS*ILGSVW
Trigger: CCACACAGACCCCAGGATTCAACTTTGGAACAACAC...GCAGGGCTGCTGCCTTTCCCGTGGTTGGTTGTTGAGAAAAATGCTCTTTGTTTT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp GACCACAAAGGCTACAATAGAGTGCAGAGAAATAAAATAGACATGACTGCCAGCCCCTGTAGCACTGGATaGGGCAGGAGCAGCAGCTAT +
Preference number: 4 (lower is better)
Translates to: DHKGYNRVQRNKIDMTASPCSTG*GRSSSY
Trigger: ATAGCTGCTGCTCCTGCCTCATCCAGTGCTACAGGG...GCTGGCAGTCATGTCTATTTTATTTCTCTGCACTCTATTGTAGCCTTTGTGGTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp TGGTCTCCAGAGCACACAGGTTATATCCATGAACATCATGCCTTTGCAAAACACCTCGGTGCAGGCTGGTaGTCTTCTCCCCATTCTCAA +
Preference number: 4 (lower is better)
Translates to: WSPEHTGYIHEHHAFAKHLGAGW*SSPHSQ
Trigger: TTGAGAATGGGGAGAAGATCACCAGCCTGCACCGAG...GTGTTTTGCAAAGGCATGATGTTCATGGATATAACCTGTGTGCTCTGGAGACCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp GGTCTCCAGAGCACACAGGTTATATCCATGAACATCATGCCTTTGCAAAACACTGCCATGCGCTTGAGCTaGGCATCAATGTTCTCAGCC +
Preference number: 4 (lower is better)
Translates to: GLQSTQVISMNIMPLQNTAMRLS*ASMFSA
Trigger: GGCTGAGAACATTGATGCTCAGCTCAAGCGCATGGC...AGTGTTTTGCAAAGGCATGATGTTCATGGATATAACCTGTGTGCTCTGGAGACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp GGAATCAAAACAAAGAGCATTTTTCTCAACAACCAACCACGGGAAAGGCAGCAGCTCTGGTCCACCCACTaGAGAGAGTCCATGTGTGCA +
Preference number: 4 (lower is better)
Translates to: GIKTKSIFLNNQPRERQQLWSTH*RESMCA
Trigger: TGCACACATGGACTCTCTTCAGTGGGTGGACCAGAG...CTGCTGCCTTTCCCGTGGTTGGTTGTTGAGAAAAATGCTCTTTGTTTTGATTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp GGTTTGACACTGGGATATTCAGAAGCAAATCTGCATCCACTTTGGCCTCAAAGACTCTGGTCCACCCACTaGAGAGAGTCCATGTGTGCA +
Preference number: 4 (lower is better)
Translates to: GLTLGYSEANLHPLWPQRLWSTH*RESMCA
Trigger: TGCACACATGGACTCTCTTCAGTGGGTGGACCAGAG...TCTTTGAGGCCAAAGTGGATGCAGATTTGCTTCTGAATATCCCAGTGTCAAACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp GGAATCAAAACAAAGAGCATTTTTCTCAACAACCAACCACGGGAAAGGCAGCAGTCCCCTGGTTGGAGGTaGTGCCACTTGAGATGGCAT +
Preference number: 4 (lower is better)
Translates to: GIKTKSIFLNNQPRERQQSPGWR*CHLRWH
Trigger: ATGCCATCTCAAGTGGCAGCACCTCCAACCAGGGGA...CTGCTGCCTTTCCCGTGGTTGGTTGTTGAGAAAAATGCTCTTTGTTTTGATTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp GTTATATCCATGAACATCATGCCTTTGCAAAACACTTCTGATAACAGGGAATCAGGAGGCACCAGGAGCTaGTCCAGGGGCCTTGAGGCT +
Preference number: 4 (lower is better)
Translates to: VISMNIMPLQNTSDNRESGGTRS*SRGLEA
Trigger: AGCCTCAAGGCCCCTGGAGCAGCTCCTGGTGCCTCC...TGATTCCCTGTTATCAGAAGTGTTTTGCAAAGGCATGATGTTCATGGATATAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp AGGGACCACAAAGGCTACAATAGAGTGCAGAGAAATAAAATAGACATGACTGCCTGGGTCACTGGTGTCTaGAGGGCCACCAGCCATGTT +
Preference number: 4 (lower is better)
Translates to: RDHKGYNRVQRNKIDMTAWVTGV*RATSHV
Trigger: AACATGGCTGGTGGCCCTGCAGACACCAGTGACCCA...GGCAGTCATGTCTATTTTATTTCTCTGCACTCTATTGTAGCCTTTGTGGTCCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp CAGAGCACACAGGTTATATCCATGAACATCATGCCTTTGCAAAACACTTCTGATGGGCTGTCCCCTGGTTaGAGGTGCTGCCACTTGAGA +
Preference number: 4 (lower is better)
Translates to: QSTQVISMNIMPLQNTSDGLSPG*RCCHLR
Trigger: TCTCAAGTGGCAGCACCTCCAACCAGGGGACAGCCC...ATCAGAAGTGTTTTGCAAAGGCATGATGTTCATGGATATAACCTGTGTGCTCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp AAAGGCTACAATAGAGTGCAGAGAAATAAAATAGACATGACTGCCAGCTTCACCAGCCAGACAGTGCTGTaGGCTGGGCAGAGCTACCCA +
Preference number: 4 (lower is better)
Translates to: KGYNRVQRNKIDMTASFTSQTVL*AGQSYP
Trigger: TGGGTAGCTCTGCCCAGCCCACAGCACTGTCTGGCT...GGTGAAGCTGGCAGTCATGTCTATTTTATTTCTCTGCACTCTATTGTAGCCTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp CTTCACCACTGTGGATCTAAGATAGGTTTGACACTGGGATATTCAGAAGCAAATAGCCAGACAGTGCTGTaGGCTGGGCAGAGCTACCCA +
Preference number: 4 (lower is better)
Translates to: LHHCGSKIGLTLGYSEANSQTVL*AGQSYP
Trigger: TGGGTAGCTCTGCCCAGCCCACAGCACTGTCTGGCT...ATTTGCTTCTGAATATCCCAGTGTCAAACCTATCTTAGATCCACAGTGGTGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp CTTCACCACTGTGGATCTAAGATAGGTTTGACACTGGGATATTCAGAAGCAAATAGTTGTCACCGGAGCTaGGAGGGAGAGCCCTGTAGC +
Preference number: 4 (lower is better)
Translates to: LHHCGSKIGLTLGYSEANSCHRS*EGEPCS
Trigger: GCTACAGGGCTCTCCCTCCCAGCTCCGGTGACAACT...ATTTGCTTCTGAATATCCCAGTGTCAAACCTATCTTAGATCCACAGTGGTGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp CTTCACCACTGTGGATCTAAGATAGGTTTGACACTGGGATATTCAGAAGCAAATTCATCGCTGGACCTGTaGCAGTCCCAGCTGCTGTGC +
Preference number: 4 (lower is better)
Translates to: LHHCGSKIGLTLGYSEANSSLDL*QSQLLC
Trigger: GCACAGCAGCTGGGACTGCCACAGGTCCAGCGATGA...ATTTGCTTCTGAATATCCCAGTGTCAAACCTATCTTAGATCCACAGTGGTGAAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp AAAGGCTACAATAGAGTGCAGAGAAATAAAATAGACATGACTGCCAGCTTCACCGGTCTGTGTGGTGAGTaGGAAGAGGCTGGTGGAAGG +
Preference number: 4 (lower is better)
Translates to: KGYNRVQRNKIDMTASFTGLCGE*EEAGGR
Trigger: CCTTCCACCAGCCTCTTCTCACTCACCACACAGACC...GGTGAAGCTGGCAGTCATGTCTATTTTATTTCTCTGCACTCTATTGTAGCCTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp CTTCACCACTGTGGATCTAAGATAGGTTTGACACTGGGATATTCAGAAGCAAATTTGGGGTCTGTGTGGTaGGTGAGAAGAGGCTGGTGG +
Preference number: 4 (lower is better)
Translates to: LHHCGSKIGLTLGYSEANLGSVW*VRRGWW
Trigger: CCACCAGCCTCTTCTCACTCACCACACAGACCCCAA...ATTTGCTTCTGAATATCCCAGTGTCAAACCTATCTTAGATCCACAGTGGTGAAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp ACTTGCCCTTGTTCTTTAAATGCTGGCCGAGAGTTCAGTGACCTTCACATTGGTGTGTTGTTCCAAAGTTaGATCCTGGGGTCTGTGTGG +
Preference number: 4 (lower is better)
Translates to: TCPCSLNAGREFSDLHIGVLFQS*ILGSVW
Trigger: CCACACAGACCCCAGGATTCAACTTTGGAACAACAC...ACCAATGTGAAGGTCACTGAACTCTCGGCCAGCATTTAAAGAACAAGGGCAAGT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp CAGAGCACACAGGTTATATCCATGAACATCATGCCTTTGCAAAACACTTCTGATCCCTGTAGCACTGGATaGGGCAGGAGCAGCAGCTAT +
Preference number: 4 (lower is better)
Translates to: QSTQVISMNIMPLQNTSDPCSTG*GRSSSY
Trigger: ATAGCTGCTGCTCCTGCCTCATCCAGTGCTACAGGG...ATCAGAAGTGTTTTGCAAAGGCATGATGTTCATGGATATAACCTGTGTGCTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp GTTATATCCATGAACATCATGCCTTTGCAAAACACTTCTGATAACAGGGAATCAGGGAGAGCCAGACAGTaGTGTGGGCTGGGCAGAGCT +
Preference number: 4 (lower is better)
Translates to: VISMNIMPLQNTSDNRESGRARQ*CGLGRA
Trigger: AGCTCTGCCCAGCCCACAGCACTGTCTGGCTCTCCC...TGATTCCCTGTTATCAGAAGTGTTTTGCAAAGGCATGATGTTCATGGATATAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp TGGTCTCCAGAGCACACAGGTTATATCCATGAACATCATGCCTTTGCAAAACACAAAGAGTGTAGACCCTaGACTGGTGGTGGCAGCAGT +
Preference number: 4 (lower is better)
Translates to: WSPEHTGYIHEHHAFAKHKECRP*TGGGSS
Trigger: ACTGCTGCCACCACCAGTGCAGGGTCTACACTCTTT...GTGTTTTGCAAAGGCATGATGTTCATGGATATAACCTGTGTGCTCTGGAGACCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp TGGTCTCCAGAGCACACAGGTTATATCCATGAACATCATGCCTTTGCAAAACACTTTTCCACCTCTCGGTaGAGGCTGGTGATCTTCTCC +
Preference number: 4 (lower is better)
Translates to: WSPEHTGYIHEHHAFAKHFSTSR*RLVIFS
Trigger: GGAGAAGATCACCAGCCTGCACCGAGAGGTGGAAAA...GTGTTTTGCAAAGGCATGATGTTCATGGATATAACCTGTGTGCTCTGGAGACCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp GTTATATCCATGAACATCATGCCTTTGCAAAACACTTCTGATAACAGGGAATCATCCTCCACCCTCCTCTaGAGCAGGGCAGAGCTCTGG +
Preference number: 4 (lower is better)
Translates to: VISMNIMPLQNTSDNRESSSTLL*SRAELW
Trigger: CCAGAGCTCTGCCCTGCTGCAGAGGAGGGTGGAGGA...TGATTCCCTGTTATCAGAAGTGTTTTGCAAAGGCATGATGTTCATGGATATAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp GTTATATCCATGAACATCATGCCTTTGCAAAACACTTCTGATAACAGGGAATCAAGGGGTGGTCGCAGCTaGCTGGGAGGGAGTCCCAAA +
Preference number: 4 (lower is better)
Translates to: VISMNIMPLQNTSDNRESRGGRS*LGGSPK
Trigger: TTTGGGACTCCCTCCCAGCCAGCTGCGACCACCCCT...TGATTCCCTGTTATCAGAAGTGTTTTGCAAAGGCATGATGTTCATGGATATAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp CTTCACCACTGTGGATCTAAGATAGGTTTGACACTGGGATATTCAGAAGCAAATGTTGCAATGGGTCACTaGTGTCTGCAGGGCCACCAG +
Preference number: 4 (lower is better)
Translates to: LHHCGSKIGLTLGYSEANVAMGH*CLQGHQ
Trigger: CTGGTGGCCCTGCAGACACCAGTGACCCATTGCAAC...ATTTGCTTCTGAATATCCCAGTGTCAAACCTATCTTAGATCCACAGTGGTGAAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp AAAGGCTACAATAGAGTGCAGAGAAATAAAATAGACATGACTGCCAGCTTCACCCTCGGTGCAGGCTGGTaGTCTTCTCCCCATTCTCAA +
Preference number: 4 (lower is better)
Translates to: KGYNRVQRNKIDMTASFTLGAGW*SSPHSQ
Trigger: TTGAGAATGGGGAGAAGATCACCAGCCTGCACCGAG...GGTGAAGCTGGCAGTCATGTCTATTTTATTTCTCTGCACTCTATTGTAGCCTTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp GACCACAAAGGCTACAATAGAGTGCAGAGAAATAAAATAGACATGACTGCCAGCACTTTGCTCCTTCACTaGCTCCTCCAATGGGCTCAG +
Preference number: 4 (lower is better)
Translates to: DHKGYNRVQRNKIDMTASTLLLH*LLQWAQ
Trigger: CTGAGCCCATTGGAGGAGTCAGTGAAGGAGCAAAGT...GCTGGCAGTCATGTCTATTTTATTTCTCTGCACTCTATTGTAGCCTTTGTGGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp GGAATCAAAACAAAGAGCATTTTTCTCAACAACCAACCACGGGAAAGGCAGCAGTCCTCATCAGCGTGCTaGAGGTATATGGTGCCACTT +
Preference number: 4 (lower is better)
Translates to: GIKTKSIFLNNQPRERQQSSSAC*RYMVPL
Trigger: AAGTGGCACCATATACCTTCAGCACGCTGATGAGGA...CTGCTGCCTTTCCCGTGGTTGGTTGTTGAGAAAAATGCTCTTTGTTTTGATTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp GTTATATCCATGAACATCATGCCTTTGCAAAACACTTCTGATAACAGGGAATCATGCCAAGCCCAAAGCTaGCAGTGTTGGCCGTGGCTG +
Preference number: 4 (lower is better)
Translates to: VISMNIMPLQNTSDNRESCQAQS*QCWPWL
Trigger: CAGCCACGGCCAACACTGGCAGCTTTGGGCTTGGCA...TGATTCCCTGTTATCAGAAGTGTTTTGCAAAGGCATGATGTTCATGGATATAAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp CAGAGCACACAGGTTATATCCATGAACATCATGCCTTTGCAAAACACTTCTGATCCTGGTTGGAGGTGCTaGCACTTGAGATGGCATTGG +
Preference number: 4 (lower is better)
Translates to: QSTQVISMNIMPLQNTSDPGWRC*HLRWHW
Trigger: CCAATGCCATCTCAAGTGGCAGCACCTCCAACCAGG...ATCAGAAGTGTTTTGCAAAGGCATGATGTTCATGGATATAACCTGTGTGCTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp AGGGACCACAAAGGCTACAATAGAGTGCAGAGAAATAAAATAGACATGACTGCCTTTTCCACCTCTCGGTaGAGGCTGGTGATCTTCTCC +
Preference number: 4 (lower is better)
Translates to: RDHKGYNRVQRNKIDMTAFSTSR*RLVIFS
Trigger: GGAGAAGATCACCAGCCTGCACCGAGAGGTGGAAAA...GGCAGTCATGTCTATTTTATTTCTCTGCACTCTATTGTAGCCTTTGTGGTCCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp GGTCTCCAGAGCACACAGGTTATATCCATGAACATCATGCCTTTGCAAAACACTTCTTCCAGCTCCTTCTaGTGCGACAGGATAAAGTCC +
Preference number: 4 (lower is better)
Translates to: GLQSTQVISMNIMPLQNTSSSSF*CDRIKS
Trigger: GGACTTTATCCTGTCGCAGCAGAAGGAGCTGGAAGA...AGTGTTTTGCAAAGGCATGATGTTCATGGATATAACCTGTGTGCTCTGGAGACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CCA 90 bp CAGAGCACACAGGTTATATCCATGAACATCATGCCTTTGCAAAACACTTCTGATAGTCACCAGAGTGGCTaGTGTGAAGGGAGAGCCAGA +
Preference number: 4 (lower is better)
Translates to: QSTQVISMNIMPLQNTSDSHQSG*CEGRAR
Trigger: TCTGGCTCTCCCTTCACACCAGCCACTCTGGTGACT...ATCAGAAGTGTTTTGCAAAGGCATGATGTTCATGGATATAACCTGTGTGCTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp GACCACAAAGGCTACAATAGAGTGCAGAGAAATAAAATAGACATGACTGCCAGCTCCTCATCAGCGTGCTaGAGGTATATGGTGCCACTT +
Preference number: 4 (lower is better)
Translates to: DHKGYNRVQRNKIDMTASSSSAC*RYMVPL
Trigger: AAGTGGCACCATATACCTTCAGCACGCTGATGAGGA...GCTGGCAGTCATGTCTATTTTATTTCTCTGCACTCTATTGTAGCCTTTGTGGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp CAGAGCACACAGGTTATATCCATGAACATCATGCCTTTGCAAAACACTTCTGATCCTGTGCCATGCGCTTaGGCTGAGCATCAATGTTCT +
Preference number: 4 (lower is better)
Translates to: QSTQVISMNIMPLQNTSDPVPCA*AEHQCS
Trigger: AGAACATTGATGCTCAGCTCAAGCGCATGGCACAGG...ATCAGAAGTGTTTTGCAAAGGCATGATGTTCATGGATATAACCTGTGTGCTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp AAAGGCTACAATAGAGTGCAGAGAAATAAAATAGACATGACTGCCAGCTTCACCAAAGAGTGTAGACCCTaGACTGGTGGTGGCAGCAGT +
Preference number: 4 (lower is better)
Translates to: KGYNRVQRNKIDMTASFTKECRP*TGGGSS
Trigger: ACTGCTGCCACCACCAGTGCAGGGTCTACACTCTTT...GGTGAAGCTGGCAGTCATGTCTATTTTATTTCTCTGCACTCTATTGTAGCCTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp GACCACAAAGGCTACAATAGAGTGCAGAGAAATAAAATAGACATGACTGCCAGCTCTTCCAGCTCCTTCTaGTGCGACAGGATAAAGTCC +
Preference number: 4 (lower is better)
Translates to: DHKGYNRVQRNKIDMTASSSSSF*CDRIKS
Trigger: GGACTTTATCCTGTCGCAGCAGAAGGAGCTGGAAGA...GCTGGCAGTCATGTCTATTTTATTTCTCTGCACTCTATTGTAGCCTTTGTGGTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp AAAACAAAGAGCATTTTTCTCAACAACCAACCACGGGAAAGGCAGCAGCCCTGCAAGAGAGTCCATGTGTaGATTGAGGATCTTGCAGAT +
Preference number: 4 (lower is better)
Translates to: KTKSIFLNNQPRERQQPCKRVHV*IEDLAD
Trigger: ATCTGCAAGATCCTCAATGCACACATGGACTCTCTT...GCAGGGCTGCTGCCTTTCCCGTGGTTGGTTGTTGAGAAAAATGCTCTTTGTTTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
3UTR CAA 72 bp GACTGCCAGCTTCACCACTGTGGATCTAAGATAGGTTaGACACTGGGATATTCAGAAGCAAATCTGCATCCA +
Preference number: 4 (lower is better)
Translates to: DCQLHHCGSKIG*TLGYSEANLHP
Trigger: TGGATGCAGATTTGCTTCTGAATATCCCAGTGTCAAACCTATCTTAGATCCACAGTGGTGAAGCTGGCAGTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp GTTATATCCATGAACATCATGCCTTTGCAAAACACTTCTGATAACAGGGAATCACTCGGTGCAGGCTGGTaGTCTTCTCCCCATTCTCAA +
Preference number: 4 (lower is better)
Translates to: VISMNIMPLQNTSDNRESLGAGW*SSPHSQ
Trigger: TTGAGAATGGGGAGAAGATCACCAGCCTGCACCGAG...TGATTCCCTGTTATCAGAAGTGTTTTGCAAAGGCATGATGTTCATGGATATAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp GGTCTCCAGAGCACACAGGTTATATCCATGAACATCATGCCTTTGCAAAACACTAGTCCATGTGTGCATTaGGGATCTTGCAGATCTGTT +
Preference number: 4 (lower is better)
Translates to: GLQSTQVISMNIMPLQNTSPCVH*GSCRSV
Trigger: AACAGATCTGCAAGATCCTCAATGCACACATGGACT...AGTGTTTTGCAAAGGCATGATGTTCATGGATATAACCTGTGTGCTCTGGAGACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp GTTATATCCATGAACATCATGCCTTTGCAAAACACTTCTGATAACAGGGAATCACTCTGGTCCACCCACTaGAGAGAGTCCATGTGTGCA +
Preference number: 4 (lower is better)
Translates to: VISMNIMPLQNTSDNRESLWSTH*RESMCA
Trigger: TGCACACATGGACTCTCTTCAGTGGGTGGACCAGAG...TGATTCCCTGTTATCAGAAGTGTTTTGCAAAGGCATGATGTTCATGGATATAAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp GGAATCAAAACAAAGAGCATTTTTCTCAACAACCAACCACGGGAAAGGCAGCAGATCTTGCAGATCTGTTaGAATGGGTCACTGGTGTCT +
Preference number: 4 (lower is better)
Translates to: GIKTKSIFLNNQPRERQQILQIC*NGSLVS
Trigger: AGACACCAGTGACCCATTGCAACAGATCTGCAAGAT...CTGCTGCCTTTCCCGTGGTTGGTTGTTGAGAAAAATGCTCTTTGTTTTGATTCC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp ACTTGCCCTTGTTCTTTAAATGCTGGCCGAGAGTTCAGTGACCTTCACATTGGTAAGAGAGTCCATGTGTaGATTGAGGATCTTGCAGAT +
Preference number: 4 (lower is better)
Translates to: TCPCSLNAGREFSDLHIGKRVHV*IEDLAD
Trigger: ATCTGCAAGATCCTCAATGCACACATGGACTCTCTT...ACCAATGTGAAGGTCACTGAACTCTCGGCCAGCATTTAAAGAACAAGGGCAAGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp GTTATATCCATGAACATCATGCCTTTGCAAAACACTTCTGATAACAGGGAATCAACTTTGCTCCTTCACTaGCTCCTCCAATGGGCTCAG +
Preference number: 4 (lower is better)
Translates to: VISMNIMPLQNTSDNRESTLLLH*LLQWAQ
Trigger: CTGAGCCCATTGGAGGAGTCAGTGAAGGAGCAAAGT...TGATTCCCTGTTATCAGAAGTGTTTTGCAAAGGCATGATGTTCATGGATATAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp CAGAGCACACAGGTTATATCCATGAACATCATGCCTTTGCAAAACACTTCTGATGCTGAAGGTATATGGTaGCACTTTGCTCCTTCACTG +
Preference number: 4 (lower is better)
Translates to: QSTQVISMNIMPLQNTSDAEGIW*HFAPSL
Trigger: CAGTGAAGGAGCAAAGTGGCACCATATACCTTCAGC...ATCAGAAGTGTTTTGCAAAGGCATGATGTTCATGGATATAACCTGTGTGCTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp AGGGACCACAAAGGCTACAATAGAGTGCAGAGAAATAAAATAGACATGACTGCCATCTTGCAGATCTGTTaGAATGGGTCACTGGTGTCT +
Preference number: 4 (lower is better)
Translates to: RDHKGYNRVQRNKIDMTAILQIC*NGSLVS
Trigger: AGACACCAGTGACCCATTGCAACAGATCTGCAAGAT...GGCAGTCATGTCTATTTTATTTCTCTGCACTCTATTGTAGCCTTTGTGGTCCCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp GTTATATCCATGAACATCATGCCTTTGCAAAACACTTCTGATAACAGGGAATCACCAGACTCCACTTGTTaGTCAAGCTTTCCAGCTGTG +
Preference number: 4 (lower is better)
Translates to: VISMNIMPLQNTSDNRESPDSTC*SSFPAV
Trigger: CACAGCTGGAAAGCTTGATCAACAAGTGGAGTCTGG...TGATTCCCTGTTATCAGAAGTGTTTTGCAAAGGCATGATGTTCATGGATATAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp GTTATATCCATGAACATCATGCCTTTGCAAAACACTTCTGATAACAGGGAATCATCCTCATCAGCGTGCTaGAGGTATATGGTGCCACTT +
Preference number: 4 (lower is better)
Translates to: VISMNIMPLQNTSDNRESSSSAC*RYMVPL
Trigger: AAGTGGCACCATATACCTTCAGCACGCTGATGAGGA...TGATTCCCTGTTATCAGAAGTGTTTTGCAAAGGCATGATGTTCATGGATATAAC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR TCA 90 bp CTTCACCACTGTGGATCTAAGATAGGTTTGACACTGGGATATTCAGAAGCAAATAGTCCATGTGTGCATTaGGGATCTTGCAGATCTGTT +
Preference number: 4 (lower is better)
Translates to: LHHCGSKIGLTLGYSEANSPCVH*GSCRSV
Trigger: AACAGATCTGCAAGATCCTCAATGCACACATGGACT...ATTTGCTTCTGAATATCCCAGTGTCAAACCTATCTTAGATCCACAGTGGTGAAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR GCA 90 bp AAAGGCTACAATAGAGTGCAGAGAAATAAAATAGACATGACTGCCAGCTTCACCATCTTGCAGATCTGTTaGAATGGGTCACTGGTGTCT +
Preference number: 4 (lower is better)
Translates to: KGYNRVQRNKIDMTASFTILQIC*NGSLVS
Trigger: AGACACCAGTGACCCATTGCAACAGATCTGCAAGAT...GGTGAAGCTGGCAGTCATGTCTATTTTATTTCTCTGCACTCTATTGTAGCCTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS TCA 90 bp GGGCTGTCCCCTGGTTGGAGGTGCTGCCACTTGAGATGGCATTGGTaGGGGTGCTGCTGCCAAGCCCAAAGCTGCCAGTGTTGGCCGTGG +
Preference number: 5 (lower is better)
Translates to: GLSPGWRCCHLRWHW*GCCCQAQSCQCWPW
Trigger: CCACGGCCAACACTGGCAGCTTTGGGCTTGGCAGCAGCACCCTCACCAATGCCATCTCAAGTGGCAGCACCTCCAACCAGGGGACAGCCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208172.2
ENSMUST00000208626.2
CDS GCA 90 bp GGTGGTAGTGGTAGTGGTGGTGCTGGTGGTGGAGGCACCAGGAGCTaGTCCAGGGGCCTTGAGGCTGAAGCCCAAAGTCCCAGCACTAGG +
Preference number: 5 (lower is better)
Translates to: GGSGSGGAGGGGTRS*SRGLEAEAQSPSTR
Trigger: CCTAGTGCTGGGACTTTGGGCTTCAGCCTCAAGGCCCCTGGAGCAGCTCCTGGTGCCTCCACCACCAGCACCACCACTACCACTACCACC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS CCA 90 bp ACCAGAGTGGCTGGTGTGAAGGGAGAGCCAGACAGTGCTGTGGGCTaGGCAGAGCTACCCACAGAGCCAAGGCTGAAGCCAGAGGCTCCA +
Preference number: 5 (lower is better)
Translates to: TRVAGVKGEPDSAVG*AELPTEPRLKPEAP
Trigger: TGGAGCCTCTGGCTTCAGCCTTGGCTCTGTGGGTAGCTCTGCCCAGCCCACAGCACTGTCTGGCTCTCCCTTCACACCAGCCACTCTGGT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS TCA 90 bp GCTGAAGCCAGAGGCTCCAGGCTGGGATGCACTGCCACTGGTGAATaGGAACCCAGTGGAGCCGGTGGACGGAGCAGAGGTGGTAGAAGA +
Preference number: 5 (lower is better)
Translates to: AEARGSRLGCTATGE*EPSGAGGRSRGGRR
Trigger: TCTTCTACCACCTCTGCTCCGTCCACCGGCTCCACTGGGTTCTCATTCACCAGTGGCAGTGCATCCCAGCCTGGAGCCTCTGGCTTCAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS GCA 90 bp TCCAGGGGCCTTGAGGCTGAAGCCCAAAGTCCCAGCACTAGGAGTTaGTGCAGTTGTCACCGGAGCTGGGAGGGAGAGCCCTGTAGCACT +
Preference number: 5 (lower is better)
Translates to: SRGLEAEAQSPSTRS*CSCHRSWEGEPCST
Trigger: AGTGCTACAGGGCTCTCCCTCCCAGCTCCGGTGACAACTGCAGCAACTCCTAGTGCTGGGACTTTGGGCTTCAGCCTCAAGGCCCCTGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS CCA 90 bp GTGGTGAGTGAGAAGAGGCTGGTGGAAGGGGTGGTCGCAGCTGGCTaGGAGGGAGTCCCAAAATTAAACCCTCCGGTGCCGGTGCCAGAA +
Preference number: 5 (lower is better)
Translates to: VVSEKRLVEGVVAAG*EGVPKLNPPVPVPE
Trigger: TTCTGGCACCGGCACCGGAGGGTTTAATTTTGGGACTCCCTCCCAGCCAGCTGCGACCACCCCTTCCACCAGCCTCTTCTCACTCACCAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208172.2
ENSMUST00000208626.2
CDS GCA 90 bp TGTAGTAGTCACCAGAGTGGCTGGTGTGAAGGGAGAGCCAGACAGTaGTGTGGGCTGGGCAGAGCTACCCACAGAGCCAAGGCTGAAGCC +
Preference number: 5 (lower is better)
Translates to: CSSHQSGWCEGRARQ*CGLGRATHRAKAEA
Trigger: GGCTTCAGCCTTGGCTCTGTGGGTAGCTCTGCCCAGCCCACAGCACTGTCTGGCTCTCCCTTCACACCAGCCACTCTGGTGACTACTACA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CAA 90 bp AAGTGGTGCTTTGGTGACTCCACTCTATGTGCCAGAGCCTCTGGAGGACACGGGGCTGCTCCAGGGGCCTaGAGGCTGAAGCCCAAAGTC +
Preference number: 5 (lower is better)
Translates to: KWCFGDSTLCARASGGHGAAPGA*RLKPKV
Trigger: GACTTTGGGCTTCAGCCTCAAGGCCCCTGGAGCAGC...CCCGTGTCCTCCAGAGGCTCTGGCACATAGAGTGGAGTCACCAAAGCACCACTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS CCA 90 bp ACTCCACTTGTTGATCAAGCTTTCCAGCTGTGCATAGGTCATCGCTaGACCTGTGGCAGTCCCAGCTGCTGTGCTGGAGGCAGGCAGAGC +
Preference number: 5 (lower is better)
Translates to: TPLVDQAFQLCIGHR*TCGSPSCCAGGRQS
Trigger: GCTCTGCCTGCCTCCAGCACAGCAGCTGGGACTGCCACAGGTCCAGCGATGACCTATGCACAGCTGGAAAGCTTGATCAACAAGTGGAGT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CAA 90 bp AAGTGGTGCTTTGGTGACTCCACTCTATGTGCCAGAGCCTCTGGAGGACACGGGCCACTTGAGATGGCATaGGTGAGGGTGCTGCTGCCA +
Preference number: 5 (lower is better)
Translates to: KWCFGDSTLCARASGGHGPLEMA*VRVLLP
Trigger: TGGCAGCAGCACCCTCACCAATGCCATCTCAAGTGG...CCCGTGTCCTCCAGAGGCTCTGGCACATAGAGTGGAGTCACCAAAGCACCACTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CAA 90 bp TCCACCCTCACAGTAGTACTGGAGTGGCTGAAGGATGAGTTCTGCCACAAGGAGGCTGCTCCAGGGGCCTaGAGGCTGAAGCCCAAAGTC +
Preference number: 5 (lower is better)
Translates to: STLTVVLEWLKDEFCHKEAAPGA*RLKPKV
Trigger: GACTTTGGGCTTCAGCCTCAAGGCCCCTGGAGCAGC...CTCCTTGTGGCAGAACTCATCCTTCAGCCACTCCAGTACTACTGTGAGGGTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CAA 90 bp CCTGCCACAGAAGCGCACAAGATAGGAGTGAGAGGTAGCCAGTGCAAAAGTGGTCTGCGCTCCTGTTCCTaGCGCCGGCCCTCACATACA +
Preference number: 5 (lower is better)
Translates to: PATEAHKIGVRGSQCKSGLRSCS*RRPSHT
Trigger: TGTATGTGAGGGCCGGCGCAAGGAACAGGAGCGCAG...ACCACTTTTGCACTGGCTACCTCTCACTCCTATCTTGTGCGCTTCTGTGGCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CAA 90 bp CTGAAGCTTGCAAGGGAGCGCTGGATTCACCACTTGCCCTTGTTCTTTAAATGCGTGCGGTCCCAGGCATaGACCTGTGTGGCCTGCTGC +
Preference number: 5 (lower is better)
Translates to: LKLARERWIHHLPLFFKCVRSQA*TCVACC
Trigger: GCAGCAGGCCACACAGGTCAATGCCTGGGACCGCAC...GCATTTAAAGAACAAGGGCAAGTGGTGAATCCAGCGCTCCCTTGCAAGCTTCAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CAA 90 bp AAAACAAAGAGCATTTTTCTCAACAACCAACCACGGGAAAGGCAGCAGCCCTGCGGGGCTGTCCCCTGGTaGGAGGTGCTGCCACTTGAG +
Preference number: 5 (lower is better)
Translates to: KTKSIFLNNQPRERQQPCGAVPW*EVLPLE
Trigger: CTCAAGTGGCAGCACCTCCAACCAGGGGACAGCCCC...GCAGGGCTGCTGCCTTTCCCGTGGTTGGTTGTTGAGAAAAATGCTCTTTGTTTT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CAA 90 bp ACGCACAGAAGCCTGTCTCCACCCCAGGTGAGTCTCTCGTCTGGAGCACCTATCAGCTCCAGACTCCACTaGTTGATCAAGCTTTCCAGC +
Preference number: 5 (lower is better)
Translates to: THRSLSPPQVSLSSGAPISSRLH*LIKLSS
Trigger: GCTGGAAAGCTTGATCAACAAGTGGAGTCTGGAGCT...GATAGGTGCTCCAGACGAGAGACTCACCTGGGGTGGAGACAGGCTTCTGTGCGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS TCA 90 bp GGGCAGAGCTCTGGTCCACCCACTGAAGAGAGTCCATGTGTGCATTaGGGATCTTGCAGATCTGTTGCAATGGGTCACTGGTGTCTGCAG +
Preference number: 5 (lower is better)
Translates to: GQSSGPPTEESPCVH*GSCRSVAMGHWCLQ
Trigger: CTGCAGACACCAGTGACCCATTGCAACAGATCTGCAAGATCCTCAATGCACACATGGACTCTCTTCAGTGGGTGGACCAGAGCTCTGCCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS GCA 90 bp ATCTTCCAGCTCCAGACTCCACTTGTTGATCAAGCTTTCCAGCTGTaGATAGGTCATCGCTGGACCTGTGGCAGTCCCAGCTGCTGTGCT +
Preference number: 5 (lower is better)
Translates to: IFQLQTPLVDQAFQL*IGHRWTCGSPSCCA
Trigger: AGCACAGCAGCTGGGACTGCCACAGGTCCAGCGATGACCTATGCACAGCTGGAAAGCTTGATCAACAAGTGGAGTCTGGAGCTGGAAGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS GCA 90 bp CAGCAGGGCAGAGCTCTGGTCCACCCACTGAAGAGAGTCCATGTGTaGATTGAGGATCTTGCAGATCTGTTGCAATGGGTCACTGGTGTC +
Preference number: 5 (lower is better)
Translates to: QQGRALVHPLKRVHV*IEDLADLLQWVTGV
Trigger: GACACCAGTGACCCATTGCAACAGATCTGCAAGATCCTCAATGCACACATGGACTCTCTTCAGTGGGTGGACCAGAGCTCTGCCCTGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CAA 90 bp CCTGCCACAGAAGCGCACAAGATAGGAGTGAGAGGTAGCCAGTGCAAAAGTGGTTGCTCGATGATATCCTaGAGGTCCTGTGCCATGCGC +
Preference number: 5 (lower is better)
Translates to: PATEAHKIGVRGSQCKSGCSMIS*RSCAMR
Trigger: GCGCATGGCACAGGACCTCAAGGATATCATCGAGCA...ACCACTTTTGCACTGGCTACCTCTCACTCCTATCTTGTGCGCTTCTGTGGCAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS GCA 90 bp TGTAGGTCTTCTCACGCTCCTCATCAGCGTGCTGAAGGTATATGGTaGCACTTTGCTCCTTCACTGACTCCTCCAATGGGCTCAGGAGGT +
Preference number: 5 (lower is better)
Translates to: CRSSHAPHQRAEGIW*HFAPSLTPPMGSGG
Trigger: ACCTCCTGAGCCCATTGGAGGAGTCAGTGAAGGAGCAAAGTGGCACCATATACCTTCAGCACGCTGATGAGGAGCGTGAGAAGACCTACA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS GCA 90 bp GCCACCAGCCATGTTCAGGTGCTCGATGATATCCTTGAGGTCCTGTaGCATGCGCTTGAGCTGAGCATCAATGTTCTCAGCCAGCTTGTA +
Preference number: 5 (lower is better)
Translates to: ATSHVQVLDDILEVL*HALELSINVLSQLV
Trigger: TACAAGCTGGCTGAGAACATTGATGCTCAGCTCAAGCGCATGGCACAGGACCTCAAGGATATCATCGAGCACCTGAACATGGCTGGTGGC
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS CCA 90 bp GCTTGTAGGTCTTCTCACGCTCCTCATCAGCGTGCTGAAGGTATATaGTGCCACTTTGCTCCTTCACTGACTCCTCCAATGGGCTCAGGA +
Preference number: 5 (lower is better)
Translates to: ACRSSHAPHQRAEGI*CHFAPSLTPPMGSG
Trigger: TCCTGAGCCCATTGGAGGAGTCAGTGAAGGAGCAAAGTGGCACCATATACCTTCAGCACGCTGATGAGGAGCGTGAGAAGACCTACAAGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CAA 90 bp ACAGGAATTAGAGACGCACAGAAGCCTGTCTCCACCCCAGGTGAGTCTCTCGTCGGTGTTGTTCCAAAGTaGAATCCTGGGGTCTGTGTG +
Preference number: 5 (lower is better)
Translates to: TGIRDAQKPVSTPGESLVGVVPK*NPGVCV
Trigger: CACACAGACCCCAGGATTCAACTTTGGAACAACACC...GACGAGAGACTCACCTGGGGTGGAGACAGGCTTCTGTGCGTCTCTAATTCCTGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CAA 90 bp GACCACAAAGGCTACAATAGAGTGCAGAGAAATAAAATAGACATGACTGCCAGCGGGGCTGTCCCCTGGTaGGAGGTGCTGCCACTTGAG +
Preference number: 5 (lower is better)
Translates to: DHKGYNRVQRNKIDMTASGAVPW*EVLPLE
Trigger: CTCAAGTGGCAGCACCTCCAACCAGGGGACAGCCCC...GCTGGCAGTCATGTCTATTTTATTTCTCTGCACTCTATTGTAGCCTTTGTGGTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CAA 90 bp GGTCTCCAGAGCACACAGGTTATATCCATGAACATCATGCCTTTGCAAAACACTGCTGCTCCAGGGGCCTaGAGGCTGAAGCCCAAAGTC +
Preference number: 5 (lower is better)
Translates to: GLQSTQVISMNIMPLQNTAAPGA*RLKPKV
Trigger: GACTTTGGGCTTCAGCCTCAAGGCCCCTGGAGCAGC...AGTGTTTTGCAAAGGCATGATGTTCATGGATATAACCTGTGTGCTCTGGAGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CAA 90 bp CTCCAGAGCACACAGGTTATATCCATGAACATCATGCCTTTGCAAAACACTTCTGTGCGGTCCCAGGCATaGACCTGTGTGGCCTGCTGC +
Preference number: 5 (lower is better)
Translates to: LQSTQVISMNIMPLQNTSVRSQA*TCVACC
Trigger: GCAGCAGGCCACACAGGTCAATGCCTGGGACCGCAC...AGAAGTGTTTTGCAAAGGCATGATGTTCATGGATATAACCTGTGTGCTCTGGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CAA 90 bp CTTCACCACTGTGGATCTAAGATAGGTTTGACACTGGGATATTCAGAAGCAAATGTGCGGTCCCAGGCATaGACCTGTGTGGCCTGCTGC +
Preference number: 5 (lower is better)
Translates to: LHHCGSKIGLTLGYSEANVRSQA*TCVACC
Trigger: GCAGCAGGCCACACAGGTCAATGCCTGGGACCGCAC...ATTTGCTTCTGAATATCCCAGTGTCAAACCTATCTTAGATCCACAGTGGTGAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CAA 90 bp GTGCAAAAGTGGTGCTTTGGTGACTCCACTCTATGTGCCAGAGCCTCTGGAGGAGAGTCCATGTGTGCATaGAGGATCTTGCAGATCTGT +
Preference number: 5 (lower is better)
Translates to: VQKWCFGDSTLCARASGGESMCA*RILQIC
Trigger: ACAGATCTGCAAGATCCTCAATGCACACATGGACTC...TCCTCCAGAGGCTCTGGCACATAGAGTGGAGTCACCAAAGCACCACTTTTGCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CAA 90 bp TGGTCTCCAGAGCACACAGGTTATATCCATGAACATCATGCCTTTGCAAAACACCCACTTGAGATGGCATaGGTGAGGGTGCTGCTGCCA +
Preference number: 5 (lower is better)
Translates to: WSPEHTGYIHEHHAFAKHPLEMA*VRVLLP
Trigger: TGGCAGCAGCACCCTCACCAATGCCATCTCAAGTGG...GTGTTTTGCAAAGGCATGATGTTCATGGATATAACCTGTGTGCTCTGGAGACCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CAA 90 bp GTTATATCCATGAACATCATGCCTTTGCAAAACACTTCTGATAACAGGGAATCAGGGGCTGTCCCCTGGTaGGAGGTGCTGCCACTTGAG +
Preference number: 5 (lower is better)
Translates to: VISMNIMPLQNTSDNRESGAVPW*EVLPLE
Trigger: CTCAAGTGGCAGCACCTCCAACCAGGGGACAGCCCC...TGATTCCCTGTTATCAGAAGTGTTTTGCAAAGGCATGATGTTCATGGATATAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CAA 90 bp GGTTTGACACTGGGATATTCAGAAGCAAATCTGCATCCACTTTGGCCTCAAAGATGCTCGATGATATCCTaGAGGTCCTGTGCCATGCGC +
Preference number: 5 (lower is better)
Translates to: GLTLGYSEANLHPLWPQRCSMIS*RSCAMR
Trigger: GCGCATGGCACAGGACCTCAAGGATATCATCGAGCA...TCTTTGAGGCCAAAGTGGATGCAGATTTGCTTCTGAATATCCCAGTGTCAAACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CAA 90 bp AAAACAAAGAGCATTTTTCTCAACAACCAACCACGGGAAAGGCAGCAGCCCTGCTCCAGACTCCACTTGTaGATCAAGCTTTCCAGCTGT +
Preference number: 5 (lower is better)
Translates to: KTKSIFLNNQPRERQQPCSRLHL*IKLSSC
Trigger: ACAGCTGGAAAGCTTGATCAACAAGTGGAGTCTGGA...GCAGGGCTGCTGCCTTTCCCGTGGTTGGTTGTTGAGAAAAATGCTCTTTGTTTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CAA 90 bp GTTATATCCATGAACATCATGCCTTTGCAAAACACTTCTGATAACAGGGAATCACTGCGCTCCTGTTCCTaGCGCCGGCCCTCACATACA +
Preference number: 5 (lower is better)
Translates to: VISMNIMPLQNTSDNRESLRSCS*RRPSHT
Trigger: TGTATGTGAGGGCCGGCGCAAGGAACAGGAGCGCAG...TGATTCCCTGTTATCAGAAGTGTTTTGCAAAGGCATGATGTTCATGGATATAAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CAA 90 bp TGGTCTCCAGAGCACACAGGTTATATCCATGAACATCATGCCTTTGCAAAACACGGTGTTGTTCCAAAGTaGAATCCTGGGGTCTGTGTG +
Preference number: 5 (lower is better)
Translates to: WSPEHTGYIHEHHAFAKHGVVPK*NPGVCV
Trigger: CACACAGACCCCAGGATTCAACTTTGGAACAACACC...GTGTTTTGCAAAGGCATGATGTTCATGGATATAACCTGTGTGCTCTGGAGACCA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CAA 90 bp GGAATCAAAACAAAGAGCATTTTTCTCAACAACCAACCACGGGAAAGGCAGCAGAGCTCCAGACTCCACTaGTTGATCAAGCTTTCCAGC +
Preference number: 5 (lower is better)
Translates to: GIKTKSIFLNNQPRERQQSSRLH*LIKLSS
Trigger: GCTGGAAAGCTTGATCAACAAGTGGAGTCTGGAGCT...CTGCTGCCTTTCCCGTGGTTGGTTGTTGAGAAAAATGCTCTTTGTTTTGATTCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CAA 90 bp TGGTCTCCAGAGCACACAGGTTATATCCATGAACATCATGCCTTTGCAAAACACTCCAGACTCCACTTGTaGATCAAGCTTTCCAGCTGT +
Preference number: 5 (lower is better)
Translates to: WSPEHTGYIHEHHAFAKHSRLHL*IKLSSC
Trigger: ACAGCTGGAAAGCTTGATCAACAAGTGGAGTCTGGA...GTGTTTTGCAAAGGCATGATGTTCATGGATATAACCTGTGTGCTCTGGAGACCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CAA 90 bp TGGTCTCCAGAGCACACAGGTTATATCCATGAACATCATGCCTTTGCAAAACACGAGTCCATGTGTGCATaGAGGATCTTGCAGATCTGT +
Preference number: 5 (lower is better)
Translates to: WSPEHTGYIHEHHAFAKHESMCA*RILQIC
Trigger: ACAGATCTGCAAGATCCTCAATGCACACATGGACTC...GTGTTTTGCAAAGGCATGATGTTCATGGATATAACCTGTGTGCTCTGGAGACCA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CAA 90 bp CAGAGCACACAGGTTATATCCATGAACATCATGCCTTTGCAAAACACTTCTGATGGTGTTGTTCCAAAGTaGAATCCTGGGGTCTGTGTG +
Preference number: 5 (lower is better)
Translates to: QSTQVISMNIMPLQNTSDGVVPK*NPGVCV
Trigger: CACACAGACCCCAGGATTCAACTTTGGAACAACACC...ATCAGAAGTGTTTTGCAAAGGCATGATGTTCATGGATATAACCTGTGTGCTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CAA 90 bp CAGAGCACACAGGTTATATCCATGAACATCATGCCTTTGCAAAACACTTCTGATGATCTTGCAGATCTGTaGCAATGGGTCACTGGTGTC +
Preference number: 5 (lower is better)
Translates to: QSTQVISMNIMPLQNTSDDLADL*QWVTGV
Trigger: GACACCAGTGACCCATTGCAACAGATCTGCAAGATC...ATCAGAAGTGTTTTGCAAAGGCATGATGTTCATGGATATAACCTGTGTGCTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CAA 90 bp CTTCACCACTGTGGATCTAAGATAGGTTTGACACTGGGATATTCAGAAGCAAATGATCTTGCAGATCTGTaGCAATGGGTCACTGGTGTC +
Preference number: 5 (lower is better)
Translates to: LHHCGSKIGLTLGYSEANDLADL*QWVTGV
Trigger: GACACCAGTGACCCATTGCAACAGATCTGCAAGATC...ATTTGCTTCTGAATATCCCAGTGTCAAACCTATCTTAGATCCACAGTGGTGAAG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CAA 90 bp CTTCACCACTGTGGATCTAAGATAGGTTTGACACTGGGATATTCAGAAGCAAATTCCAGACTCCACTTGTaGATCAAGCTTTCCAGCTGT +
Preference number: 5 (lower is better)
Translates to: LHHCGSKIGLTLGYSEANSRLHL*IKLSSC
Trigger: ACAGCTGGAAAGCTTGATCAACAAGTGGAGTCTGGA...ATTTGCTTCTGAATATCCCAGTGTCAAACCTATCTTAGATCCACAGTGGTGAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS-3UTR CAA 90 bp GTTATATCCATGAACATCATGCCTTTGCAAAACACTTCTGATAACAGGGAATCAGAGTCCATGTGTGCATaGAGGATCTTGCAGATCTGT +
Preference number: 5 (lower is better)
Translates to: VISMNIMPLQNTSDNRESESMCA*RILQIC
Trigger: ACAGATCTGCAAGATCCTCAATGCACACATGGACTC...TGATTCCCTGTTATCAGAAGTGTTTTGCAAAGGCATGATGTTCATGGATATAAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS TCA 72 bp CTGTGGGCTGGGCAGAGCTACCCACAGAGCCAAGGCTaGAGCCAGAGGCTCCAGGCTGGGATGCACTGCCAC +
Preference number: 6 (lower is better)
Translates to: LWAGQSYPQSQG*SQRLQAGMHCH
Trigger: GTGGCAGTGCATCCCAGCCTGGAGCCTCTGGCTTCAGCCTTGGCTCTGTGGGTAGCTCTGCCCAGCCCACAG
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS TCA 72 bp AGCCAGAGGCTCCAGGCTGGGATGCACTGCCACTGGTaGATGAGAACCCAGTGGAGCCGGTGGACGGAGCAG +
Preference number: 6 (lower is better)
Translates to: SQRLQAGMHCHW*MRTQWSRWTEQ
Trigger: CTGCTCCGTCCACCGGCTCCACTGGGTTCTCATTCACCAGTGGCAGTGCATCCCAGCCTGGAGCCTCTGGCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS CAA 72 bp GTGAGGGTGCTGCTGCCAAGCCCAAAGCTGCCAGTGTaGGCCGTGGCTGGTGTGGCAGCTGCGTTACTCAGG +
Preference number: 6 (lower is better)
Translates to: VRVLLPSPKLPV*AVAGVAAALLR
Trigger: CCTGAGTAACGCAGCTGCCACACCAGCCACGGCCAACACTGGCAGCTTTGGGCTTGGCAGCAGCACCCTCAC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208172.2
ENSMUST00000208626.2
CDS CCA 72 bp GCTGCCAAGCCCAAAGCTGCCAGTGTTGGCCGTGGCTaGTGTGGCAGCTGCGTTACTCAGGCTGAGCTTTGG +
Preference number: 6 (lower is better)
Translates to: AAKPKAASVGRG*CGSCVTQAELW
Trigger: CCAAAGCTCAGCCTGAGTAACGCAGCTGCCACACCAGCCACGGCCAACACTGGCAGCTTTGGGCTTGGCAGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208172.2
ENSMUST00000208626.2
CDS CAA 72 bp CTGGTGGTGGAGGCACCAGGAGCTGCTCCAGGGGCCTaGAGGCTGAAGCCCAAAGTCCCAGCACTAGGAGTT +
Preference number: 6 (lower is better)
Translates to: LVVEAPGAAPGA*RLKPKVPALGV
Trigger: AACTCCTAGTGCTGGGACTTTGGGCTTCAGCCTCAAGGCCCCTGGAGCAGCTCCTGGTGCCTCCACCACCAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS GCA 72 bp GAGGCTGAAGCCCAAAGTCCCAGCACTAGGAGTTGCTaGAGTTGTCACCGGAGCTGGGAGGGAGAGCCCTGT +
Preference number: 6 (lower is better)
Translates to: EAEAQSPSTRSC*SCHRSWEGEPC
Trigger: ACAGGGCTCTCCCTCCCAGCTCCGGTGACAACTGCAGCAACTCCTAGTGCTGGGACTTTGGGCTTCAGCCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS GCA 72 bp CTTGAGGCTGAAGCCCAAAGTCCCAGCACTAGGAGTTaGTGCAGTTGTCACCGGAGCTGGGAGGGAGAGCCC +
Preference number: 6 (lower is better)
Translates to: LEAEAQSPSTRS*CSCHRSWEGEP
Trigger: GGGCTCTCCCTCCCAGCTCCGGTGACAACTGCAGCAACTCCTAGTGCTGGGACTTTGGGCTTCAGCCTCAAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS GCA 72 bp TGCATAGGTCATCGCTGGACCTGTGGCAGTCCCAGCTaGTGTGCTGGAGGCAGGCAGAGCAGTAGCTGCTAC +
Preference number: 6 (lower is better)
Translates to: CIGHRWTCGSPS*CAGGRQSSSCY
Trigger: GTAGCAGCTACTGCTCTGCCTGCCTCCAGCACAGCAGCTGGGACTGCCACAGGTCCAGCGATGACCTATGCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS CCA 72 bp AGCTTTCCAGCTGTGCATAGGTCATCGCTGGACCTGTaGCAGTCCCAGCTGCTGTGCTGGAGGCAGGCAGAG +
Preference number: 6 (lower is better)
Translates to: SFPAVHRSSLDL*QSQLLCWRQAE
Trigger: CTCTGCCTGCCTCCAGCACAGCAGCTGGGACTGCCACAGGTCCAGCGATGACCTATGCACAGCTGGAAAGCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS TCA 72 bp CCTGGTTGGAGGTGCTGCCACTTGAGATGGCATTGGTaGGGGTGCTGCTGCCAAGCCCAAAGCTGCCAGTGT +
Preference number: 6 (lower is better)
Translates to: PGWRCCHLRWHW*GCCCQAQSCQC
Trigger: ACACTGGCAGCTTTGGGCTTGGCAGCAGCACCCTCACCAATGCCATCTCAAGTGGCAGCACCTCCAACCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208172.2
ENSMUST00000208626.2
CDS CAA 72 bp GAGCCAAAGACAAAGCCAGTGGGGGCTGTCCCCTGGTaGGAGGTGCTGCCACTTGAGATGGCATTGGTGAGG +
Preference number: 6 (lower is better)
Translates to: EPKTKPVGAVPW*EVLPLEMALVR
Trigger: CCTCACCAATGCCATCTCAAGTGGCAGCACCTCCAACCAGGGGACAGCCCCCACTGGCTTTGTCTTTGGCTC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208172.2
ENSMUST00000208626.2
CDS GCA 72 bp TCACTGGTGTCTGCAGGGCCACCAGCCATGTTCAGGTaGTCGATGATATCCTTGAGGTCCTGTGCCATGCGC +
Preference number: 6 (lower is better)
Translates to: SLVSAGPPAMFR*SMISLRSCAMR
Trigger: GCGCATGGCACAGGACCTCAAGGATATCATCGAGCACCTGAACATGGCTGGTGGCCCTGCAGACACCAGTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS CCA 72 bp GAAGAGCCAAAGACAAAGCCAGTGGGGGCTGTCCCCTaGTTGGAGGTGCTGCCACTTGAGATGGCATTGGTG +
Preference number: 6 (lower is better)
Translates to: EEPKTKPVGAVP*LEVLPLEMALV
Trigger: CACCAATGCCATCTCAAGTGGCAGCACCTCCAACCAGGGGACAGCCCCCACTGGCTTTGTCTTTGGCTCTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208172.2
ENSMUST00000208626.2
CDS CCA 72 bp GTTGATCAAGCTTTCCAGCTGTGCATAGGTCATCGCTaGACCTGTGGCAGTCCCAGCTGCTGTGCTGGAGGC +
Preference number: 6 (lower is better)
Translates to: VDQAFQLCIGHR*TCGSPSCCAGG
Trigger: GCCTCCAGCACAGCAGCTGGGACTGCCACAGGTCCAGCGATGACCTATGCACAGCTGGAAAGCTTGATCAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS GCA 72 bp TCCTCCAATGGGCTCAGGAGGTCTTCCAGCTCCTTCTaGTGCGACAGGATAAAGTCCAGCTCCTGGTCCAGT +
Preference number: 6 (lower is better)
Translates to: SSNGLRRSSSSF*CDRIKSSSWSS
Trigger: ACTGGACCAGGAGCTGGACTTTATCCTGTCGCAGCAGAAGGAGCTGGAAGACCTCCTGAGCCCATTGGAGGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS GCA 72 bp CTCCAGACTCCACTTGTTGATCAAGCTTTCCAGCTGTaGATAGGTCATCGCTGGACCTGTGGCAGTCCCAGC +
Preference number: 6 (lower is better)
Translates to: LQTPLVDQAFQL*IGHRWTCGSPS
Trigger: GCTGGGACTGCCACAGGTCCAGCGATGACCTATGCACAGCTGGAAAGCTTGATCAACAAGTGGAGTCTGGAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS GCA 72 bp GAGTCCATGTGTGCATTGAGGATCTTGCAGATCTGTTaGAATGGGTCACTGGTGTCTGCAGGGCCACCAGCC +
Preference number: 6 (lower is better)
Translates to: ESMCALRILQIC*NGSLVSAGPPA
Trigger: GGCTGGTGGCCCTGCAGACACCAGTGACCCATTGCAACAGATCTGCAAGATCCTCAATGCACACATGGACTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS TCA 72 bp AGCCTGTTCCTCCAGAAGCAGGTGTTGTTCCAAAGTTaGATCCTGGGGTCTGTGTGGTTGGGGTCTGTGTGG +
Preference number: 6 (lower is better)
Translates to: SLFLQKQVLFQS*ILGSVWLGSVW
Trigger: CCACACAGACCCCAACCACACAGACCCCAGGATTCAACTTTGGAACAACACCTGCTTCTGGAGGAACAGGCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208172.2
ENSMUST00000208626.2
CDS TCA 72 bp GCCGCTCCTGATCTTCCAGCTCCAGACTCCACTTGTTaGTCAAGCTTTCCAGCTGTGCATAGGTCATCGCTG +
Preference number: 6 (lower is better)
Translates to: AAPDLPAPDSTC*SSFPAVHRSSL
Trigger: CAGCGATGACCTATGCACAGCTGGAAAGCTTGATCAACAAGTGGAGTCTGGAGCTGGAAGATCAGGAGCGGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS GCA 72 bp TCTCACGCTCCTCATCAGCGTGCTGAAGGTATATGGTaGCACTTTGCTCCTTCACTGACTCCTCCAATGGGC +
Preference number: 6 (lower is better)
Translates to: SHAPHQRAEGIW*HFAPSLTPPMG
Trigger: GCCCATTGGAGGAGTCAGTGAAGGAGCAAAGTGGCACCATATACCTTCAGCACGCTGATGAGGAGCGTGAGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS GCA 72 bp GATCTTGCAGATCTGTTGCAATGGGTCACTGGTGTCTaGAGGGCCACCAGCCATGTTCAGGTGCTCGATGAT +
Preference number: 6 (lower is better)
Translates to: DLADLLQWVTGV*RATSHVQVLDD
Trigger: ATCATCGAGCACCTGAACATGGCTGGTGGCCCTGCAGACACCAGTGACCCATTGCAACAGATCTGCAAGATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS CAA 90 bp CCACTGAAGAGAGTCCATGTGTGCATTGAGGATCTTGCAGATCTGTaGCAATGGGTCACTGGTGTCTGCAGGGCCACCAGCCATGTTCAG +
Preference number: 6 (lower is better)
Translates to: PLKRVHVCIEDLADL*QWVTGVCRATSHVQ
Trigger: CTGAACATGGCTGGTGGCCCTGCAGACACCAGTGACCCATTGCAACAGATCTGCAAGATCCTCAATGCACACATGGACTCTCTTCAGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS CAA 72 bp AAGCCTGTTCCTCCAGAAGCAGGTGTTGTTCCAAAGTaGAATCCTGGGGTCTGTGTGGTTGGGGTCTGTGTG +
Preference number: 6 (lower is better)
Translates to: KPVPPEAGVVPK*NPGVCVVGVCV
Trigger: CACACAGACCCCAACCACACAGACCCCAGGATTCAACTTTGGAACAACACCTGCTTCTGGAGGAACAGGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208172.2
ENSMUST00000208626.2
CDS GCA 72 bp CATGTTCAGGTGCTCGATGATATCCTTGAGGTCCTGTaGCATGCGCTTGAGCTGAGCATCAATGTTCTCAGC +
Preference number: 6 (lower is better)
Translates to: HVQVLDDILEVL*HALELSINVLS
Trigger: GCTGAGAACATTGATGCTCAGCTCAAGCGCATGGCACAGGACCTCAAGGATATCATCGAGCACCTGAACATG
51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2
CDS CCA 72 bp TCTTCTCACGCTCCTCATCAGCGTGCTGAAGGTATATaGTGCCACTTTGCTCCTTCACTGACTCCTCCAATG +
Preference number: 6 (lower is better)
Translates to: SSHAPHQRAEGI*CHFAPSLTPPM
Trigger: CATTGGAGGAGTCAGTGAAGGAGCAAAGTGGCACCATATACCTTCAGCACGCTGATGAGGAGCGTGAGAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000057195.17
ENSMUST00000207103.2
ENSMUST00000208626.2