Pregenerated sensors for NUP54 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000034826Ensembl transcript IDs: ENSMUST00000038514.15, ENSMUST00000130156.2, ENSMUST00000135112.8, ENSMUST00000146470.2
Found 117 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTGAAGAGACCACCTAAAGAAGTCTGCTGCTGCTGCTGCTGCTGCTaGGTATTAAATCCTCCAAATCCAAGTCCGGTTCCCAAGCCAGTG | + |
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Preference number: 1 (lower is better) Translates to: LKRPPKEVCCCCCCC*VLNPPNPSPVPKPV Trigger: CACTGGCTTGGGAACCGGACTTGGATTTGGAGGATTTAATACCCAGCAGCAGCAGCAGCAGCAGCAGACTTCTTTAGGTGGTCTCTTCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146470.2 |
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| 3UTR-3UTR TCA 90 bp | CCTGAAGCACAGCCTCCAACAGGCATGGAATCCCAGTTTGTTGTGTCATGTAGGTCGCAGACATCCCAGTaGGGAGAAGCATCCTTTTCC | + |
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Preference number: 2 (lower is better) Translates to: PEAQPPTGMESQFVVSCRSQTSQ*GEASFS Trigger: GGAAAAGGATGCTTCTCCTCACTGGGATGTCTGCGA...CCTACATGACACAACAAACTGGGATTCCATGCCTGTTGGAGGCTGTGCTTCAGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| 3UTR CCA 72 bp | CCACCTAAAGAAGTCTGCTGCTGCTGCTGCTGCTGCTaGGTATTAAATCCTCCAAATCCAAGTCCGGTTCCC | + |
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Preference number: 3 (lower is better) Translates to: PPKEVCCCCCCC*VLNPPNPSPVP Trigger: GGGAACCGGACTTGGATTTGGAGGATTTAATACCCAGCAGCAGCAGCAGCAGCAGCAGACTTCTTTAGGTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146470.2 |
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| 3UTR GCA 72 bp | AAGAGACCACCTAAAGAAGTCTGCTGCTGCTGCTGCTaGTGCTGGGTATTAAATCCTCCAAATCCAAGTCCG | + |
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Preference number: 3 (lower is better) Translates to: KRPPKEVCCCCC*CWVLNPPNPSP Trigger: CGGACTTGGATTTGGAGGATTTAATACCCAGCAGCAGCAGCAGCAGCAGCAGACTTCTTTAGGTGGTCTCTT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146470.2 |
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| 3UTR GCA 72 bp | CTGAAGAGACCACCTAAAGAAGTCTGCTGCTGCTGCTaGTGCTGCTGGGTATTAAATCCTCCAAATCCAAGT | + |
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Preference number: 3 (lower is better) Translates to: LKRPPKEVCCCC*CCWVLNPPNPS Trigger: ACTTGGATTTGGAGGATTTAATACCCAGCAGCAGCAGCAGCAGCAGCAGACTTCTTTAGGTGGTCTCTTCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146470.2 |
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| 3UTR CCA 72 bp | TGCATTTATACCCTGAAGCACAGCCTCCAACAGGCATaGAATCCCAGTTTGTTGTGTCATGTAGGAAGTAGC | + |
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Preference number: 3 (lower is better) Translates to: CIYTLKHSLQQA*NPSLLCHVGSS Trigger: GCTACTTCCTACATGACACAACAAACTGGGATTCCATGCCTGTTGGAGGCTGTGCTTCAGGGTATAAATGCA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| 3UTR-3UTR CAA 90 bp | TTCACAGATATAAAAGCTGAAATGCATTTATACCCTGAAGCACAGCCTCCAACAGCATGGAATCCCAGTTaGTTGTGTCATGTAGGAAGT | + |
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Preference number: 3 (lower is better) Translates to: FTDIKAEMHLYPEAQPPTAWNPS*LCHVGS Trigger: ACTTCCTACATGACACAACAAACTGGGATTCCATGC...TGTTGGAGGCTGTGCTTCAGGGTATAAATGCATTTCAGCTTTTATATCTGTGAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| 3UTR-3UTR CAA 90 bp | CTCTCCACAGCTGATTTCACAGATATAAAAGCTGAAATGCATTTATACCCTGAATTTCAAAGATTCTCTTaGAAGGGCTTTGTGGTGACC | + |
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Preference number: 3 (lower is better) Translates to: LSTADFTDIKAEMHLYPEFQRFS*KGFVVT Trigger: GGTCACCACAAAGCCCTTCAAAGAGAATCTTTGAAA...TTCAGGGTATAAATGCATTTCAGCTTTTATATCTGTGAAATCAGCTGTGGAGAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR GCA 90 bp | GCAGACATCCCAGTGAGGAGAAGCATCCTTTTCCCCGGCCATGTGGTCATCGTGGAGCTGGGTAGACTGTaGAGGAGCCTGGGTCGGCTG | + |
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Preference number: 4 (lower is better) Translates to: ADIPVRRSILFPGHVVIVELGRL*RSLGRL Trigger: CAGCCGACCCAGGCTCCTGCACAGTCTACCCAGCTC...CACGATGACCACATGGCCGGGGAAAAGGATGCTTCTCCTCACTGGGATGTCTGC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR TCA 90 bp | GCAGACATCCCAGTGAGGAGAAGCATCCTTTTCCCCGGCCATGTGGTCATCGTGTTGGGGCTGAAAAGCTaGAGGCAGAGCCTGCAGTTG | + |
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Preference number: 4 (lower is better) Translates to: ADIPVRRSILFPGHVVIVLGLKS*RQSLQL Trigger: CAACTGCAGGCTCTGCCTTCAGCTTTTCAGCCCCAA...CACGATGACCACATGGCCGGGGAAAAGGATGCTTCTCCTCACTGGGATGTCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR TCA 90 bp | GCAGACATCCCAGTGAGGAGAAGCATCCTTTTCCCCGGCCATGTGGTCATCGTGCCTGGGTCGGCTGACTaGAGAGACCACCTAAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: ADIPVRRSILFPGHVVIVPGSAD*RDHLKK Trigger: CTTCTTTAGGTGGTCTCTTCAGTCAGCCGACCCAGG...CACGATGACCACATGGCCGGGGAAAAGGATGCTTCTCCTCACTGGGATGTCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR TCA 90 bp | CTGAGGATCGCAGACATCCCAGTGAGGAGAAGCATCCTTTTCCCCGGCCATGTGAGCCGACCTTTGAACTaGGTGGGCGCATTCAGTTCC | + |
|
Preference number: 4 (lower is better) Translates to: LRIADIPVRRSILFPGHVSRPLN*VGAFSS Trigger: GGAACTGAATGCGCCCACTCAGTTCAAAGGTCGGCT...CACATGGCCGGGGAAAAGGATGCTTCTCCTCACTGGGATGTCTGCGATCCTCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR GCA 90 bp | GCAGACATCCCAGTGAGGAGAAGCATCCTTTTCCCCGGCCATGTGGTCATCGTGCGAGAAGGCCTGTACTaGCTGTGTTTGTTGGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: ADIPVRRSILFPGHVVIVREGLY*LCLLGL Trigger: CAGCCCCAACAAACACAGGCAGTACAGGCCTTCTCG...CACGATGACCACATGGCCGGGGAAAAGGATGCTTCTCCTCACTGGGATGTCTGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR TCA 90 bp | CTGAGGATCGCAGACATCCCAGTGAGGAGAAGCATCCTTTTCCCCGGCCATGTGTGTGTTTGTTGGGGCTaGAAAGCTGAAGGCAGAGCC | + |
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Preference number: 4 (lower is better) Translates to: LRIADIPVRRSILFPGHVCVCWG*KAEGRA Trigger: GGCTCTGCCTTCAGCTTTTCAGCCCCAACAAACACA...CACATGGCCGGGGAAAAGGATGCTTCTCCTCACTGGGATGTCTGCGATCCTCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR GCA 90 bp | GCAGACATCCCAGTGAGGAGAAGCATCCTTTTCCCCGGCCATGTGGTCATCGTGAACCTTTGTTCTGAGTaGCACCGAGAAGGCCTGTAC | + |
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Preference number: 4 (lower is better) Translates to: ADIPVRRSILFPGHVVIVNLCSE*HREGLY Trigger: GTACAGGCCTTCTCGGTGGCACTCAGAACAAAGGTT...CACGATGACCACATGGCCGGGGAAAAGGATGCTTCTCCTCACTGGGATGTCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR GCA 90 bp | GCAGACATCCCAGTGAGGAGAAGCATCCTTTTCCCCGGCCATGTGGTCATCGTGCAACTGGTTCCACTTTaGCAAGATGGCGTCTCTCTC | + |
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Preference number: 4 (lower is better) Translates to: ADIPVRRSILFPGHVVIVQLVPL*QDGVSL Trigger: GAGAGAGACGCCATCTTGGCAAAGTGGAACCAGTTG...CACGATGACCACATGGCCGGGGAAAAGGATGCTTCTCCTCACTGGGATGTCTGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR TCA 90 bp | TGCTGCTGCTGCTGCTGGGTATTAAATCCTCCAAATCCAAGTCCGGTTCCCAAGTTGGGGCTGAAAAGCTaGAGGCAGAGCCTGCAGTTG | + |
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Preference number: 4 (lower is better) Translates to: CCCCCWVLNPPNPSPVPKLGLKS*RQSLQL Trigger: CAACTGCAGGCTCTGCCTTCAGCTTTTCAGCCCCAA...CTTGGGAACCGGACTTGGATTTGGAGGATTTAATACCCAGCAGCAGCAGCAGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000146470.2 |
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| CDS-3UTR TCA 90 bp | CCCAGTTTGTTGTGTCATGTAGGAAGTAGCTCTGTGGCGCTCTGTGCTATGGAGAAGAGCTGCTTGATCTaGGCGGGAGACAGCTCTGTC | + |
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Preference number: 4 (lower is better) Translates to: PSLLCHVGSSSVALCAMEKSCLI*AGDSSV Trigger: GACAGAGCTGTCTCCCGCTCAGATCAAGCAGCTCTT...CTCCATAGCACAGAGCGCCACAGAGCTACTTCCTACATGACACAACAAACTGGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR GCA 90 bp | TGCTGCTGCTGCTGCTGCTGCTGGGTATTAAATCCTCCAAATCCAAGTCCGGTTCGAGAAGGCCTGTACTaGCTGTGTTTGTTGGGGCTG | + |
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Preference number: 4 (lower is better) Translates to: CCCCCCCWVLNPPNPSPVREGLY*LCLLGL Trigger: CAGCCCCAACAAACACAGGCAGTACAGGCCTTCTCG...AACCGGACTTGGATTTGGAGGATTTAATACCCAGCAGCAGCAGCAGCAGCAGCA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146470.2 |
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| CDS-3UTR GCA 90 bp | CTGAGGATCGCAGACATCCCAGTGAGGAGAAGCATCCTTTTCCCCGGCCATGTGGAACTCTTCTCGAGGTaGCATTTGGAGAACGCTCAA | + |
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Preference number: 4 (lower is better) Translates to: LRIADIPVRRSILFPGHVELFSR*HLENAQ Trigger: TTGAGCGTTCTCCAAATGGCACCTCGAGAAGAGTTC...CACATGGCCGGGGAAAAGGATGCTTCTCCTCACTGGGATGTCTGCGATCCTCAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR CCA 90 bp | GCAGACATCCCAGTGAGGAGAAGCATCCTTTTCCCCGGCCATGTGGTCATCGTGCAAAAGGGATTCTCCTaGGTAAACTCCACTGGAGGA | + |
|
Preference number: 4 (lower is better) Translates to: ADIPVRRSILFPGHVVIVQKGFS*VNSTGG Trigger: TCCTCCAGTGGAGTTTACCCAGGAGAATCCCTTTTG...CACGATGACCACATGGCCGGGGAAAAGGATGCTTCTCCTCACTGGGATGTCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| 3UTR CAA 72 bp | CTGAAGCACAGCCTCCAACAGGCATGGAATCCCAGTTaGTTGTGTCATGTAGGAAGTAGCTCTGTGGCGCTC | + |
|
Preference number: 4 (lower is better) Translates to: LKHSLQQAWNPS*LCHVGSSSVAL Trigger: GAGCGCCACAGAGCTACTTCCTACATGACACAACAAACTGGGATTCCATGCCTGTTGGAGGCTGTGCTTCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR TCA 90 bp | TGCTGCTGCTGCTGCTGGGTATTAAATCCTCCAAATCCAAGTCCGGTTCCCAAGTGTGTTTGTTGGGGCTaGAAAGCTGAAGGCAGAGCC | + |
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Preference number: 4 (lower is better) Translates to: CCCCCWVLNPPNPSPVPKCVCWG*KAEGRA Trigger: GGCTCTGCCTTCAGCTTTTCAGCCCCAACAAACACA...CTTGGGAACCGGACTTGGATTTGGAGGATTTAATACCCAGCAGCAGCAGCAGCA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000146470.2 |
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| CDS-3UTR CCA 90 bp | CCCAGTTTGTTGTGTCATGTAGGAAGTAGCTCTGTGGCGCTCTGTGCTATGGAGTCCACTTTGCCAAGATaGCGTCTCTCTCATCCCCCA | + |
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Preference number: 4 (lower is better) Translates to: PSLLCHVGSSSVALCAMESTLPR*RLSHPP Trigger: TGGGGGATGAGAGAGACGCCATCTTGGCAAAGTGGA...CTCCATAGCACAGAGCGCCACAGAGCTACTTCCTACATGACACAACAAACTGGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR CCA 90 bp | GCAGACATCCCAGTGAGGAGAAGCATCCTTTTCCCCGGCCATGTGGTCATCGTGTCTCGAGGTGCCATTTaGAGAACGCTCAACAACATA | + |
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Preference number: 4 (lower is better) Translates to: ADIPVRRSILFPGHVVIVSRGAI*RTLNNI Trigger: TATGTTGTTGAGCGTTCTCCAAATGGCACCTCGAGA...CACGATGACCACATGGCCGGGGAAAAGGATGCTTCTCCTCACTGGGATGTCTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR CCA 90 bp | CTGCTGCTGCTGCTGCTGGGTATTAAATCCTCCAAATCCAAGTCCGGTTCCCAACTCTGTAGACCAGGCTaGCCTCGAACTCAGAAATCC | + |
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Preference number: 4 (lower is better) Translates to: LLLLLLGIKSSKSKSGSQLCRPG*PRTQKS Trigger: GGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAG...TTGGGAACCGGACTTGGATTTGGAGGATTTAATACCCAGCAGCAGCAGCAGCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146470.2 |
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| CDS-3UTR GCA 90 bp | TGCTGCTGCTGCTGCTGCTGCTGGGTATTAAATCCTCCAAATCCAAGTCCGGTTAACCTTTGTTCTGAGTaGCACCGAGAAGGCCTGTAC | + |
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Preference number: 4 (lower is better) Translates to: CCCCCCCWVLNPPNPSPVNLCSE*HREGLY Trigger: GTACAGGCCTTCTCGGTGGCACTCAGAACAAAGGTT...AACCGGACTTGGATTTGGAGGATTTAATACCCAGCAGCAGCAGCAGCAGCAGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146470.2 |
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| CDS-3UTR GCA 90 bp | CTGAGGATCGCAGACATCCCAGTGAGGAGAAGCATCCTTTTCCCCGGCCATGTGGCTTTAATGTTGGCTTaGTCAAAGTGGGCATACAGT | + |
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Preference number: 4 (lower is better) Translates to: LRIADIPVRRSILFPGHVALMLA*SKWAYS Trigger: ACTGTATGCCCACTTTGAGCAAGCCAACATTAAAGC...CACATGGCCGGGGAAAAGGATGCTTCTCCTCACTGGGATGTCTGCGATCCTCAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR GCA 90 bp | CTGCTGCTGCTGCTGCTGGGTATTAAATCCTCCAAATCCAAGTCCGGTTCCCAAAAATCCACCTGCCTTTaGCTCCCGAAAGAATGTCCG | + |
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Preference number: 4 (lower is better) Translates to: LLLLLLGIKSSKSKSGSQKSTCL*LPKECP Trigger: CGGACATTCTTTCGGGAGGCAAAGGCAGGTGGATTT...TTGGGAACCGGACTTGGATTTGGAGGATTTAATACCCAGCAGCAGCAGCAGCAG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000146470.2 |
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| CDS-3UTR CCA 90 bp | GCAGACATCCCAGTGAGGAGAAGCATCCTTTTCCCCGGCCATGTGGTCATCGTGATGATGCTAATCAAGTaGCTAAGGCCTTCCTGTTGT | + |
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Preference number: 4 (lower is better) Translates to: ADIPVRRSILFPGHVVIVMMLIK*LRPSCC Trigger: ACAACAGGAAGGCCTTAGCCACTTGATTAGCATCAT...CACGATGACCACATGGCCGGGGAAAAGGATGCTTCTCCTCACTGGGATGTCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR CCA 90 bp | CCTGAAGCACAGCCTCCAACAGGCATGGAATCCCAGTTTGTTGTGTCATGTAGGACACCGCCTCTGCTATaGATGGTCTCATTCAATCCA | + |
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Preference number: 4 (lower is better) Translates to: PEAQPPTGMESQFVVSCRTPPLL*MVSFNP Trigger: TGGATTGAATGAGACCATCCATAGCAGAGGCGGTGT...CCTACATGACACAACAAACTGGGATTCCATGCCTGTTGGAGGCTGTGCTTCAGG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR GCA 90 bp | GCAGACATCCCAGTGAGGAGAAGCATCCTTTTCCCCGGCCATGTGGTCATCGTGTCTACCAATTGCTGTTaGTGGCTTCTAATATCTGTT | + |
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Preference number: 4 (lower is better) Translates to: ADIPVRRSILFPGHVVIVSTNCC*WLLISV Trigger: AACAGATATTAGAAGCCAGCAACAGCAATTGGTAGA...CACGATGACCACATGGCCGGGGAAAAGGATGCTTCTCCTCACTGGGATGTCTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR GCA 90 bp | GCAGACATCCCAGTGAGGAGAAGCATCCTTTTCCCCGGCCATGTGGTCATCGTGCCTCCCAAAACTTTATaGAATGATTCTACCAATTGC | + |
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Preference number: 4 (lower is better) Translates to: ADIPVRRSILFPGHVVIVPPKTL*NDSTNC Trigger: GCAATTGGTAGAATCATTGCATAAAGTTTTGGGAGG...CACGATGACCACATGGCCGGGGAAAAGGATGCTTCTCCTCACTGGGATGTCTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR CCA 90 bp | GCAGACATCCCAGTGAGGAGAAGCATCCTTTTCCCCGGCCATGTGGTCATCGTGCTGGGTAAACTCCACTaGAGGAATGTTATTATTGAA | + |
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Preference number: 4 (lower is better) Translates to: ADIPVRRSILFPGHVVIVLGKLH*RNVIIE Trigger: TTCAATAATAACATTCCTCCAGTGGAGTTTACCCAG...CACGATGACCACATGGCCGGGGAAAAGGATGCTTCTCCTCACTGGGATGTCTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR CCA 90 bp | CCTGAAGCACAGCCTCCAACAGGCATGGAATCCCAGTTTGTTGTGTCATGTAGGCGCCTCTGCTATGGATaGTCTCATTCAATCCATGTT | + |
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Preference number: 4 (lower is better) Translates to: PEAQPPTGMESQFVVSCRRLCYG*SHSIHV Trigger: AACATGGATTGAATGAGACCATCCATAGCAGAGGCG...CCTACATGACACAACAAACTGGGATTCCATGCCTGTTGGAGGCTGTGCTTCAGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR TCA 90 bp | CCTGAAGCACAGCCTCCAACAGGCATGGAATCCCAGTTTGTTGTGTCATGTAGGTTCGAAGCAATTCTTTaGAACCCACCATTGGTACAG | + |
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Preference number: 4 (lower is better) Translates to: PEAQPPTGMESQFVVSCRFEAIL*NPPLVQ Trigger: CTGTACCAATGGTGGGTTTCAAAGAATTGCTTCGAA...CCTACATGACACAACAAACTGGGATTCCATGCCTGTTGGAGGCTGTGCTTCAGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR TCA 90 bp | CCCAGTTTGTTGTGTCATGTAGGAAGTAGCTCTGTGGCGCTCTGTGCTATGGAGGTTTCAAATGCTGCTTaGTTTCTCGTAACAGGTCTG | + |
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Preference number: 4 (lower is better) Translates to: PSLLCHVGSSSVALCAMEVSNAA*FLVTGL Trigger: CAGACCTGTTACGAGAAATCAAGCAGCATTTGAAAC...CTCCATAGCACAGAGCGCCACAGAGCTACTTCCTACATGACACAACAAACTGGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR GCA 90 bp | CTGAGGATCGCAGACATCCCAGTGAGGAGAAGCATCCTTTTCCCCGGCCATGTGAATGATTCTACCAATTaGTGTTGCTGGCTTCTAATA | + |
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Preference number: 4 (lower is better) Translates to: LRIADIPVRRSILFPGHVNDSTN*CCWLLI Trigger: TATTAGAAGCCAGCAACAGCAATTGGTAGAATCATT...CACATGGCCGGGGAAAAGGATGCTTCTCCTCACTGGGATGTCTGCGATCCTCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR CCA 90 bp | CCTGAAGCACAGCCTCCAACAGGCATGGAATCCCAGTTTGTTGTGTCATGTAGGTTGACCGTAAGGGTCTaGTTTCCTCCCAAAACTTTA | + |
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Preference number: 4 (lower is better) Translates to: PEAQPPTGMESQFVVSCRLTVRV*FPPKTL Trigger: TAAAGTTTTGGGAGGAAACCAGACCCTTACGGTCAA...CCTACATGACACAACAAACTGGGATTCCATGCCTGTTGGAGGCTGTGCTTCAGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR GCA 90 bp | TTCACAGATATAAAAGCTGAAATGCATTTATACCCTGAAGCACAGCCTCCAACAGTTCCCCAGAAGGCCTaGAACTGGTTCCACTTTGCC | + |
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Preference number: 4 (lower is better) Translates to: FTDIKAEMHLYPEAQPPTVPQKA*NWFHFA Trigger: GGCAAAGTGGAACCAGTTGCAGGCCTTCTGGGGAAC...TGTTGGAGGCTGTGCTTCAGGGTATAAATGCATTTCAGCTTTTATATCTGTGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR GCA 90 bp | CCTGAAGCACAGCCTCCAACAGGCATGGAATCCCAGTTTGTTGTGTCATGTAGGTTTCCTCTTGTATTGTaGTATTTTGGCCATAGTCGT | + |
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Preference number: 4 (lower is better) Translates to: PEAQPPTGMESQFVVSCRFPLVL*YFGHSR Trigger: ACGACTATGGCCAAAATAGCACAATACAAGAGGAAA...CCTACATGACACAACAAACTGGGATTCCATGCCTGTTGGAGGCTGTGCTTCAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR TCA 90 bp | TTCACAGATATAAAAGCTGAAATGCATTTATACCCTGAAGCACAGCCTCCAACACCAAAACCTTTGTTCTaGGTGCCACCGAGAAGGCCT | + |
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Preference number: 4 (lower is better) Translates to: FTDIKAEMHLYPEAQPPTPKPLF*VPPRRP Trigger: AGGCCTTCTCGGTGGCACTCAGAACAAAGGTTTTGG...TGTTGGAGGCTGTGCTTCAGGGTATAAATGCATTTCAGCTTTTATATCTGTGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR GCA 90 bp | CTCTCCACAGCTGATTTCACAGATATAAAAGCTGAAATGCATTTATACCCTGAACGTTGGAGCAGAAAGTaGGCTGGCAGTGTTGATGAG | + |
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Preference number: 4 (lower is better) Translates to: LSTADFTDIKAEMHLYPERWSRK*AGSVDE Trigger: CTCATCAACACTGCCAGCGCACTTTCTGCTCCAACG...TTCAGGGTATAAATGCATTTCAGCTTTTATATCTGTGAAATCAGCTGTGGAGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR GCA 90 bp | CTCTCCACAGCTGATTTCACAGATATAAAAGCTGAAATGCATTTATACCCTGAAGTCACCCCAAGCTGCTaGAGCTGGGCTTTAATGTTG | + |
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Preference number: 4 (lower is better) Translates to: LSTADFTDIKAEMHLYPEVTPSC*SWALML Trigger: CAACATTAAAGCCCAGCTGCAGCAGCTTGGGGTGAC...TTCAGGGTATAAATGCATTTCAGCTTTTATATCTGTGAAATCAGCTGTGGAGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR CCA 90 bp | CTCTCCACAGCTGATTTCACAGATATAAAAGCTGAAATGCATTTATACCCTGAACCAAGCTGCTGCAGCTaGGCTTTAATGTTGGCTTGC | + |
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Preference number: 4 (lower is better) Translates to: LSTADFTDIKAEMHLYPEPSCCS*ALMLAC Trigger: GCAAGCCAACATTAAAGCCCAGCTGCAGCAGCTTGG...TTCAGGGTATAAATGCATTTCAGCTTTTATATCTGTGAAATCAGCTGTGGAGAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR TCA 90 bp | CTCTCCACAGCTGATTTCACAGATATAAAAGCTGAAATGCATTTATACCCTGAATTTGTAAGAGCTGCTTaGTCTGAGCGGGAGACAGCT | + |
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Preference number: 4 (lower is better) Translates to: LSTADFTDIKAEMHLYPEFVRAA*SERETA Trigger: AGCTGTCTCCCGCTCAGATCAAGCAGCTCTTACAAA...TTCAGGGTATAAATGCATTTCAGCTTTTATATCTGTGAAATCAGCTGTGGAGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR GCA 90 bp | CTCTCCACAGCTGATTTCACAGATATAAAAGCTGAAATGCATTTATACCCTGAATGCTGCTGCTGCTGCTaGTGGGTATTAAATCCTCCA | + |
|
Preference number: 4 (lower is better) Translates to: LSTADFTDIKAEMHLYPECCCCC*WVLNPP Trigger: TGGAGGATTTAATACCCAGCAGCAGCAGCAGCAGCA...TTCAGGGTATAAATGCATTTCAGCTTTTATATCTGTGAAATCAGCTGTGGAGAG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR CCA 90 bp | TTCACAGATATAAAAGCTGAAATGCATTTATACCCTGAAGCACAGCCTCCAACATTCTGCATCCTGATCTaGGACATCAGCTCATTCAGC | + |
|
Preference number: 4 (lower is better) Translates to: FTDIKAEMHLYPEAQPPTFCILI*DISSFS Trigger: GCTGAATGAGCTGATGTCCCAGATCAGGATGCAGAA...TGTTGGAGGCTGTGCTTCAGGGTATAAATGCATTTCAGCTTTTATATCTGTGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR TCA 90 bp | CTCTCCACAGCTGATTTCACAGATATAAAAGCTGAAATGCATTTATACCCTGAATTCACGGCTCCAAAATaGTTCTGCATCCTGATCTGG | + |
|
Preference number: 4 (lower is better) Translates to: LSTADFTDIKAEMHLYPEFTAPK*FCILIW Trigger: CCAGATCAGGATGCAGAATCATTTTGGAGCCGTGAA...TTCAGGGTATAAATGCATTTCAGCTTTTATATCTGTGAAATCAGCTGTGGAGAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR TCA 90 bp | CTCTCCACAGCTGATTTCACAGATATAAAAGCTGAAATGCATTTATACCCTGAAAATGATTCTGCATCCTaGTCTGGGACATCAGCTCAT | + |
|
Preference number: 4 (lower is better) Translates to: LSTADFTDIKAEMHLYPENDSAS*SGTSAH Trigger: ATGAGCTGATGTCCCAGATCAGGATGCAGAATCATT...TTCAGGGTATAAATGCATTTCAGCTTTTATATCTGTGAAATCAGCTGTGGAGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR TCA 90 bp | CTCTCCACAGCTGATTTCACAGATATAAAAGCTGAAATGCATTTATACCCTGAAGCTCAACAACATAAATaGCAACTTCCGTCTGATCAT | + |
|
Preference number: 4 (lower is better) Translates to: LSTADFTDIKAEMHLYPEAQQHK*QLPSDH Trigger: ATGATCAGACGGAAGTTGTCATTTATGTTGTTGAGC...TTCAGGGTATAAATGCATTTCAGCTTTTATATCTGTGAAATCAGCTGTGGAGAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR GCA 90 bp | TTCACAGATATAAAAGCTGAAATGCATTTATACCCTGAAGCACAGCCTCCAACATGTTGTTTCAAATGCTaGTTGATTTCTCGTAACAGG | + |
|
Preference number: 4 (lower is better) Translates to: FTDIKAEMHLYPEAQPPTCCFKC*LISRNR Trigger: CCTGTTACGAGAAATCAAGCAGCATTTGAAACAACA...TGTTGGAGGCTGTGCTTCAGGGTATAAATGCATTTCAGCTTTTATATCTGTGAA 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS CCA 90 bp | CCACCGGCGGTGGAGTTGGCAGTCTCAAGCCCACCAAATCCCGTCTaGACCTTGAGGCTGAGACGGACGAGGGGACGCGGGGTCCCGGGA | + |
|
Preference number: 5 (lower is better) Translates to: PPAVELAVSSPPNPV*TLRLRRTRGRGVPG Trigger: TCCCGGGACCCCGCGTCCCCTCGTCCGTCTCAGCCTCAAGGTCCAGACGGGATTTGGTGGGCTTGAGACTGCCAACTCCACCGCCGGTGG 68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130156.2 |
||
| CDS GCA 90 bp | CTCAGAAATCCACCTGCCTTTGCCTCCCGAAAGAATGTCCGCCGGTaGCGCGGTGGCTGTAGAGGTGCCCGAAGTGCCCGAAGGAGCCCC | + |
|
Preference number: 5 (lower is better) Translates to: LRNPPAFASRKNVRR*RGGCRGARSARRSP Trigger: GGGGCTCCTTCGGGCACTTCGGGCACCTCTACAGCCACCGCGGCACCGGCGGACATTCTTTCGGGAGGCAAAGGCAGGTGGATTTCTGAG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146470.2 |
||
| CDS GCA 90 bp | AACCCACTCTGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTaGCTTTGCCTCCCGAAAGAATGTCCGCCGGTGCCGCGGTGGCTG | + |
|
Preference number: 5 (lower is better) Translates to: NPLCRPGWPRTQKST*LCLPKECPPVPRWL Trigger: CAGCCACCGCGGCACCGGCGGACATTCTTTCGGGAGGCAAAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGGGTT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146470.2 |
||
| CDS-3UTR CAA 90 bp | GCAGACATCCCAGTGAGGAGAAGCATCCTTTTCCCCGGCCATGTGGTCATCGTGCATCCCCCAGTAGCGTaGGAGCAGAAAGTGCGCTGG | + |
|
Preference number: 5 (lower is better) Translates to: ADIPVRRSILFPGHVVIVHPPVA*EQKVRW Trigger: CCAGCGCACTTTCTGCTCCAACGCTACTGGGGGATG...CACGATGACCACATGGCCGGGGAAAAGGATGCTTCTCCTCACTGGGATGTCTGC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
||
| CDS TCA 90 bp | GCAGTGTTGATGAGCTGGGTAGACTGTGCAGGAGCCTGGGTCGGCTaGCTGAAGAGACCACCTAAAGAAGTCTGCTGCTGCTGCTGCTGC | + |
|
Preference number: 5 (lower is better) Translates to: AVLMSWVDCAGAWVG*LKRPPKEVCCCCCC Trigger: GCAGCAGCAGCAGCAGCAGACTTCTTTAGGTGGTCTCTTCAGTCAGCCGACCCAGGCTCCTGCACAGTCTACCCAGCTCATCAACACTGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS CCA 90 bp | TTCCTGTTCCCCAGAAGGCCTGCAACTGGTTCCACTTTGCCAAGATaGCGTCTCTCTCATCCCCCAGTAGCGTTGGAGCAGAAAGTGCGC | + |
|
Preference number: 5 (lower is better) Translates to: FLFPRRPATGSTLPR*RLSHPPVALEQKVR Trigger: GCGCACTTTCTGCTCCAACGCTACTGGGGGATGAGAGAGACGCCATCTTGGCAAAGTGGAACCAGTTGCAGGCCTTCTGGGGAACAGGAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR CAA 90 bp | CTGAGGATCGCAGACATCCCAGTGAGGAGAAGCATCCTTTTCCCCGGCCATGTGAGTGGGCATACAGTGTaGTCGCTGGAACTCTTCTCG | + |
|
Preference number: 5 (lower is better) Translates to: LRIADIPVRRSILFPGHVSGHTV*SLELFS Trigger: CGAGAAGAGTTCCAGCGACAACACTGTATGCCCACT...CACATGGCCGGGGAAAAGGATGCTTCTCCTCACTGGGATGTCTGCGATCCTCAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
||
| CDS GCA 90 bp | CGGTTCCCAAGCCAGTGCCTAAACCAGTGCCAGTTCCCGTCGTTGTaGCAAAACCAGTACCAAAGCCAAAACCTTTGTTCTGAGTGCCAC | + |
|
Preference number: 5 (lower is better) Translates to: RFPSQCLNQCQFPSL*QNQYQSQNLCSECH Trigger: GTGGCACTCAGAACAAAGGTTTTGGCTTTGGTACTGGTTTTGGCACAACGACGGGAACTGGCACTGGTTTAGGCACTGGCTTGGGAACCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS GCA 90 bp | GGAGACAGCTCTGTCCTGGTCATAGAAAGGGTCACCCCAAGCTGCTaGAGCTGGGCTTTAATGTTGGCTTGCTCAAAGTGGGCATACAGT | + |
|
Preference number: 5 (lower is better) Translates to: GDSSVLVIERVTPSC*SWALMLACSKWAYS Trigger: ACTGTATGCCCACTTTGAGCAAGCCAACATTAAAGCCCAGCTGCAGCAGCTTGGGGTGACCCTTTCTATGACCAGGACAGAGCTGTCTCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
||
| CDS-3UTR CAA 90 bp | GCAGACATCCCAGTGAGGAGAAGCATCCTTTTCCCCGGCCATGTGGTCATCGTGTTCTCGAGGTGCCATTaGGAGAACGCTCAACAACAT | + |
|
Preference number: 5 (lower is better) Translates to: ADIPVRRSILFPGHVVIVFSRCH*ENAQQH Trigger: ATGTTGTTGAGCGTTCTCCAAATGGCACCTCGAGAA...CACGATGACCACATGGCCGGGGAAAAGGATGCTTCTCCTCACTGGGATGTCTGC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS GCA 90 bp | ATCCTCCAAATCCAAGTCCGGTTCCCAAGCCAGTGCCTAAACCAGTaGCAGTTCCCGTCGTTGTGCCAAAACCAGTACCAAAGCCAAAAC | + |
|
Preference number: 5 (lower is better) Translates to: ILQIQVRFPSQCLNQ*QFPSLCQNQYQSQN Trigger: GTTTTGGCTTTGGTACTGGTTTTGGCACAACGACGGGAACTGGCACTGGTTTAGGCACTGGCTTGGGAACCGGACTTGGATTTGGAGGAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR CAA 90 bp | CTGAGGATCGCAGACATCCCAGTGAGGAGAAGCATCCTTTTCCCCGGCCATGTGTCTGGGTTATCCACCTaGGCCTGTTCCCAAATAATA | + |
|
Preference number: 5 (lower is better) Translates to: LRIADIPVRRSILFPGHVSGLST*ACSQII Trigger: TATTATTTGGGAACAGGCCAAGGTGGATAACCCAGA...CACATGGCCGGGGAAAAGGATGCTTCTCCTCACTGGGATGTCTGCGATCCTCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR CAA 90 bp | TGCTGCTGCTGCTGCTGGGTATTAAATCCTCCAAATCCAAGTCCGGTTCCCAAGGAAATCCACCTGCCTTaGCCTCCCGAAAGAATGTCC | + |
|
Preference number: 5 (lower is better) Translates to: CCCCCWVLNPPNPSPVPKEIHLP*PPERMS Trigger: GGACATTCTTTCGGGAGGCAAAGGCAGGTGGATTTC...CTTGGGAACCGGACTTGGATTTGGAGGATTTAATACCCAGCAGCAGCAGCAGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146470.2 |
||
| CDS TCA 90 bp | CATCAGCCTGGATCGCATAGCCACTCTTCCTCTGGATTTCCTGTTTaGTTAGGACCTGTAAGGTCCTGTGGGAGAGCTCCATCAGTTTCC | + |
|
Preference number: 5 (lower is better) Translates to: HQPGSHSHSSSGFPV*LGPVRSCGRAPSVS Trigger: GGAAACTGATGGAGCTCTCCCACAGGACCTTACAGGTCCTAATCAAACAGGAAATCCAGAGGAAGAGTGGCTATGCGATCCAGGCTGATG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
||
| CDS CCA 90 bp | GTAGTTGTTGTTCCAAATCCTCCAAACCCACTCTGTAGACCAGGCTaGCCTCGAACTCAGAAATCCACCTGCCTTTGCCTCCCGAAAGAA | + |
|
Preference number: 5 (lower is better) Translates to: VVVVPNPPNPLCRPG*PRTQKSTCLCLPKE Trigger: TTCTTTCGGGAGGCAAAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGGGTTTGGAGGATTTGGAACAACAACTAC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146470.2 |
||
| CDS-3UTR CAA 90 bp | GCAGACATCCCAGTGAGGAGAAGCATCCTTTTCCCCGGCCATGTGGTCATCGTGAAGGCCTTCCTGTTGTaGTTTCAAATGCTGCTTGAT | + |
|
Preference number: 5 (lower is better) Translates to: ADIPVRRSILFPGHVVIVKAFLL*FQMLLD Trigger: ATCAAGCAGCATTTGAAACAACAACAGGAAGGCCTT...CACGATGACCACATGGCCGGGGAAAAGGATGCTTCTCCTCACTGGGATGTCTGC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR CAA 90 bp | CCCAGTTTGTTGTGTCATGTAGGAAGTAGCTCTGTGGCGCTCTGTGCTATGGAGCTCTGGATTTCCTGTTaGATTAGGACCTGTAAGGTC | + |
|
Preference number: 5 (lower is better) Translates to: PSLLCHVGSSSVALCAMELWISC*IRTCKV Trigger: GACCTTACAGGTCCTAATCAAACAGGAAATCCAGAG...CTCCATAGCACAGAGCGCCACAGAGCTACTTCCTACATGACACAACAAACTGGG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS CCA 90 bp | GTGGGCATACAGTGTTGTCGCTGGAACTCTTCTCGAGGTGCCATTTaGAGAACGCTCAACAACATAAATGACAACTTCCGTCTGATCATC | + |
|
Preference number: 5 (lower is better) Translates to: VGIQCCRWNSSRGAI*RTLNNINDNFRLII Trigger: GATGATCAGACGGAAGTTGTCATTTATGTTGTTGAGCGTTCTCCAAATGGCACCTCGAGAAGAGTTCCAGCGACAACACTGTATGCCCAC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS CCA 90 bp | GGCTTTAATGTTGGCTTGCTCAAAGTGGGCATACAGTGTTGTCGCTaGAACTCTTCTCGAGGTGCCATTTGGAGAACGCTCAACAACATA | + |
|
Preference number: 5 (lower is better) Translates to: GFNVGLLKVGIQCCR*NSSRGAIWRTLNNI Trigger: TATGTTGTTGAGCGTTCTCCAAATGGCACCTCGAGAAGAGTTCCAGCGACAACACTGTATGCCCACTTTGAGCAAGCCAACATTAAAGCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR CAA 90 bp | CCTGAAGCACAGCCTCCAACAGGCATGGAATCCCAGTTTGTTGTGTCATGTAGGCAGTTTCCTCTTGTATaGTGCTATTTTGGCCATAGT | + |
|
Preference number: 5 (lower is better) Translates to: PEAQPPTGMESQFVVSCRQFPLV*CYFGHS Trigger: ACTATGGCCAAAATAGCACAATACAAGAGGAAACTG...CCTACATGACACAACAAACTGGGATTCCATGCCTGTTGGAGGCTGTGCTTCAGG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR CAA 90 bp | CCCAGTTTGTTGTGTCATGTAGGAAGTAGCTCTGTGGCGCTCTGTGCTATGGAGTGTTTCAAATGCTGCTaGATTTCTCGTAACAGGTCT | + |
|
Preference number: 5 (lower is better) Translates to: PSLLCHVGSSSVALCAMECFKCC*ISRNRS Trigger: AGACCTGTTACGAGAAATCAAGCAGCATTTGAAACA...CTCCATAGCACAGAGCGCCACAGAGCTACTTCCTACATGACACAACAAACTGGG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR CAA 90 bp | TTCACAGATATAAAAGCTGAAATGCATTTATACCCTGAAGCACAGCCTCCAACAAGTGCGCTGGCAGTGTaGATGAGCTGGGTAGACTGT | + |
|
Preference number: 5 (lower is better) Translates to: FTDIKAEMHLYPEAQPPTSALAV*MSWVDC Trigger: ACAGTCTACCCAGCTCATCAACACTGCCAGCGCACT...TGTTGGAGGCTGTGCTTCAGGGTATAAATGCATTTCAGCTTTTATATCTGTGAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR CAA 90 bp | TTCACAGATATAAAAGCTGAAATGCATTTATACCCTGAAGCACAGCCTCCAACAGCAACTGGTTCCACTTaGCCAAGATGGCGTCTCTCT | + |
|
Preference number: 5 (lower is better) Translates to: FTDIKAEMHLYPEAQPPTATGST*PRWRLS Trigger: AGAGAGACGCCATCTTGGCAAAGTGGAACCAGTTGC...TGTTGGAGGCTGTGCTTCAGGGTATAAATGCATTTCAGCTTTTATATCTGTGAA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS GCA 90 bp | CCCTCCACATTGACCGTAAGGGTCTGGTTTCCTCCCAAAACTTTATaGAATGATTCTACCAATTGCTGTTGCTGGCTTCTAATATCTGTT | + |
|
Preference number: 5 (lower is better) Translates to: PSTLTVRVWFPPKTL*NDSTNCCCWLLISV Trigger: AACAGATATTAGAAGCCAGCAACAGCAATTGGTAGAATCATTGCATAAAGTTTTGGGAGGAAACCAGACCCTTACGGTCAATGTGGAGGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR CAA 90 bp | TTCACAGATATAAAAGCTGAAATGCATTTATACCCTGAAGCACAGCCTCCAACATTAATGCCCTCCACATaGACCGTAAGGGTCTGGTTT | + |
|
Preference number: 5 (lower is better) Translates to: FTDIKAEMHLYPEAQPPTLMPST*TVRVWF Trigger: AAACCAGACCCTTACGGTCAATGTGGAGGGCATTAA...TGTTGGAGGCTGTGCTTCAGGGTATAAATGCATTTCAGCTTTTATATCTGTGAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR CAA 90 bp | CTCTCCACAGCTGATTTCACAGATATAAAAGCTGAAATGCATTTATACCCTGAAGCTAAGGCCTTCCTGTaGTTGTTTCAAATGCTGCTT | + |
|
Preference number: 5 (lower is better) Translates to: LSTADFTDIKAEMHLYPEAKAFL*LFQMLL Trigger: AAGCAGCATTTGAAACAACAACAGGAAGGCCTTAGC...TTCAGGGTATAAATGCATTTCAGCTTTTATATCTGTGAAATCAGCTGTGGAGAG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR CAA 90 bp | CTCTCCACAGCTGATTTCACAGATATAAAAGCTGAAATGCATTTATACCCTGAACTTCGAAGCAATTCTTaGAAACCCACCATTGGTACA | + |
|
Preference number: 5 (lower is better) Translates to: LSTADFTDIKAEMHLYPELRSNS*KPTIGT Trigger: TGTACCAATGGTGGGTTTCAAAGAATTGCTTCGAAG...TTCAGGGTATAAATGCATTTCAGCTTTTATATCTGTGAAATCAGCTGTGGAGAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR CAA 90 bp | CTCTCCACAGCTGATTTCACAGATATAAAAGCTGAAATGCATTTATACCCTGAACTTAGTCATCTGATCTaGAACCTTCAGTCTTCGAAG | + |
|
Preference number: 5 (lower is better) Translates to: LSTADFTDIKAEMHLYPELSHLI*NLQSSK Trigger: CTTCGAAGACTGAAGGTTCAAGATCAGATGACTAAG...TTCAGGGTATAAATGCATTTCAGCTTTTATATCTGTGAAATCAGCTGTGGAGAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS-3UTR CAA 90 bp | CTCTCCACAGCTGATTTCACAGATATAAAAGCTGAAATGCATTTATACCCTGAATCCATCAGTTTCCTCTaGTATTGTGCTATTTTGGCC | + |
|
Preference number: 5 (lower is better) Translates to: LSTADFTDIKAEMHLYPESISFL*YCAILA Trigger: GGCCAAAATAGCACAATACAAGAGGAAACTGATGGA...TTCAGGGTATAAATGCATTTCAGCTTTTATATCTGTGAAATCAGCTGTGGAGAG 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
||
| CDS GCA 72 bp | CCACCTGCCTTTGCCTCCCGAAAGAATGTCCGCCGGTaGCGCGGTGGCTGTAGAGGTGCCCGAAGTGCCCGA | + |
|
Preference number: 6 (lower is better) Translates to: PPAFASRKNVRR*RGGCRGARSAR Trigger: TCGGGCACTTCGGGCACCTCTACAGCCACCGCGGCACCGGCGGACATTCTTTCGGGAGGCAAAGGCAGGTGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146470.2 |
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| CDS CAA 72 bp | TTGGCAGTCTCAAGCCCACCAAATCCCGTCTGGACCTaGAGGCTGAGACGGACGAGGGGACGCGGGGTCCCG | + |
|
Preference number: 6 (lower is better) Translates to: LAVSSPPNPVWT*RLRRTRGRGVP Trigger: CGGGACCCCGCGTCCCCTCGTCCGTCTCAGCCTCAAGGTCCAGACGGGATTTGGTGGGCTTGAGACTGCCAA 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130156.2 |
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| CDS CAA 90 bp | GCGGTGGAGTTGGCAGTCTCAAGCCCACCAAATCCCGTCTGGACCTaGAGGCTGAGACGGACGAGGGGACGCGGGGTCCCGGGAAATGAG | + |
|
Preference number: 6 (lower is better) Translates to: AVELAVSSPPNPVWT*RLRRTRGRGVPGNE Trigger: CTCATTTCCCGGGACCCCGCGTCCCCTCGTCCGTCTCAGCCTCAAGGTCCAGACGGGATTTGGTGGGCTTGAGACTGCCAACTCCACCGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000130156.2 |
||
| CDS GCA 72 bp | CCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTTTaGCTCCCGAAAGAATGTCCGCCGGTGCCGCGGTGG | + |
|
Preference number: 6 (lower is better) Translates to: PGWPRTQKSTCL*LPKECPPVPRW Trigger: CCACCGCGGCACCGGCGGACATTCTTTCGGGAGGCAAAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146470.2 |
||
| CDS CCA 72 bp | GTGGAGTTGGCAGTCTCAAGCCCACCAAATCCCGTCTaGACCTTGAGGCTGAGACGGACGAGGGGACGCGGG | + |
|
Preference number: 6 (lower is better) Translates to: VELAVSSPPNPV*TLRLRRTRGRG Trigger: CCCGCGTCCCCTCGTCCGTCTCAGCCTCAAGGTCCAGACGGGATTTGGTGGGCTTGAGACTGCCAACTCCAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000130156.2 |
||
| CDS CAA 72 bp | ACCAGGCTGGCCTCGAACTCAGAAATCCACCTGCCTTaGCCTCCCGAAAGAATGTCCGCCGGTGCCGCGGTG | + |
|
Preference number: 6 (lower is better) Translates to: TRLASNSEIHLP*PPERMSAGAAV Trigger: CACCGCGGCACCGGCGGACATTCTTTCGGGAGGCAAAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146470.2 |
||
| CDS CAA 90 bp | GCGGTTAATCCGAAACCCCCAAAATTAAACCCACCGGCGGTGGAGTaGGCAGTCTCAAGCCCACCAAATCCCGCCGGTGCCGCGGTGGCT | + |
|
Preference number: 6 (lower is better) Translates to: AVNPKPPKLNPPAVE*AVSSPPNPAGAAVA Trigger: AGCCACCGCGGCACCGGCGGGATTTGGTGGGCTTGAGACTGCCAACTCCACCGCCGGTGGGTTTAATTTTGGGGGTTTCGGATTAACCGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135112.8 |
||
| CDS CAA 72 bp | CCGAAACCCCCAAAATTAAACCCACCGGCGGTGGAGTaGGCAGTCTCAAGCCCACCAAATCCCGCCGGTGCC | + |
|
Preference number: 6 (lower is better) Translates to: PKPPKLNPPAVE*AVSSPPNPAGA Trigger: GGCACCGGCGGGATTTGGTGGGCTTGAGACTGCCAACTCCACCGCCGGTGGGTTTAATTTTGGGGGTTTCGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000135112.8 |
||
| CDS GCA 72 bp | TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCACCTaGCTTTGCCTCCCGAAAGAATGTCCGCCGGTGCCG | + |
|
Preference number: 6 (lower is better) Translates to: CRPGWPRTQKST*LCLPKECPPVP Trigger: CGGCACCGGCGGACATTCTTTCGGGAGGCAAAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146470.2 |
||
| CDS CCA 72 bp | CCCAGAAGGCCTGCAACTGGTTCCACTTTGCCAAGATaGCGTCTCTCTCATCCCCCAGTAGCGTTGGAGCAG | + |
|
Preference number: 6 (lower is better) Translates to: PRRPATGSTLPR*RLSHPPVALEQ Trigger: CTGCTCCAACGCTACTGGGGGATGAGAGAGACGCCATCTTGGCAAAGTGGAACCAGTTGCAGGCCTTCTGGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
||
| CDS CAA 72 bp | CCGAAACCCCCAAAATTAAACCCACCGGCGGTGGAGTaGGCAGTCTCAAGCCCACCAAATCCCGTCTGGACC | + |
|
Preference number: 6 (lower is better) Translates to: PKPPKLNPPAVE*AVSSPPNPVWT Trigger: GGTCCAGACGGGATTTGGTGGGCTTGAGACTGCCAACTCCACCGCCGGTGGGTTTAATTTTGGGGGTTTCGG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000130156.2 |
||
| CDS CAA 90 bp | GCGGTTAATCCGAAACCCCCAAAATTAAACCCACCGGCGGTGGAGTaGGCAGTCTCAAGCCCACCAAATCCCGTCTGGACCTTGAGGCTG | + |
|
Preference number: 6 (lower is better) Translates to: AVNPKPPKLNPPAVE*AVSSPPNPVWTLRL Trigger: CAGCCTCAAGGTCCAGACGGGATTTGGTGGGCTTGAGACTGCCAACTCCACCGCCGGTGGGTTTAATTTTGGGGGTTTCGGATTAACCGC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000130156.2 |
||
| CDS CAA 72 bp | TTCCTGTTCCCCAGAAGGCCTGCAACTGGTTCCACTTaGCCAAGATGGCGTCTCTCTCATCCCCCAGTAGCG | + |
|
Preference number: 6 (lower is better) Translates to: FLFPRRPATGST*PRWRLSHPPVA Trigger: CGCTACTGGGGGATGAGAGAGACGCCATCTTGGCAAAGTGGAACCAGTTGCAGGCCTTCTGGGGAACAGGAA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS GCA 72 bp | ATCCAAGTCCGGTTCCCAAGCCAGTGCCTAAACCAGTaGCAGTTCCCGTCGTTGTGCCAAAACCAGTACCAA | + |
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Preference number: 6 (lower is better) Translates to: IQVRFPSQCLNQ*QFPSLCQNQYQ Trigger: TTGGTACTGGTTTTGGCACAACGACGGGAACTGGCACTGGTTTAGGCACTGGCTTGGGAACCGGACTTGGAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS CCA 72 bp | GTTCCAAATCCTCCAAACCCACTCTGTAGACCAGGCTaGCCTCGAACTCAGAAATCCACCTGCCTTTGCCTC | + |
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Preference number: 6 (lower is better) Translates to: VPNPPNPLCRPG*PRTQKSTCLCL Trigger: GAGGCAAAGGCAGGTGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAGTGGGTTTGGAGGATTTGGAAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000146470.2 |
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| CDS CAA 72 bp | CACCCCAAGCTGCTGCAGCTGGGCTTTAATGTTGGCTaGCTCAAAGTGGGCATACAGTGTTGTCGCTGGAAC | + |
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Preference number: 6 (lower is better) Translates to: HPKLLQLGFNVG*LKVGIQCCRWN Trigger: GTTCCAGCGACAACACTGTATGCCCACTTTGAGCAAGCCAACATTAAAGCCCAGCTGCAGCAGCTTGGGGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS CAA 72 bp | AGGGTCACCCCAAGCTGCTGCAGCTGGGCTTTAATGTaGGCTTGCTCAAAGTGGGCATACAGTGTTGTCGCT | + |
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Preference number: 6 (lower is better) Translates to: RVTPSCCSWALM*ACSKWAYSVVA Trigger: AGCGACAACACTGTATGCCCACTTTGAGCAAGCCAACATTAAAGCCCAGCTGCAGCAGCTTGGGGTGACCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS CAA 90 bp | GTCCGGTTCCCAAGCCAGTGCCTAAACCAGTGCCAGTTCCCGTCGTaGTGCCAAAACCAGTACCAAAGCCAAAACCTTTGTTCTGAGTGC | + |
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Preference number: 6 (lower is better) Translates to: VRFPSQCLNQCQFPS*CQNQYQSQNLCSEC Trigger: GCACTCAGAACAAAGGTTTTGGCTTTGGTACTGGTTTTGGCACAACGACGGGAACTGGCACTGGTTTAGGCACTGGCTTGGGAACCGGAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS TCA 72 bp | ACCGAGAAGGCCTGTACTGCCTGTGTTTGTTGGGGCTaGAAAGCTGAAGGCAGAGCCTGCAGTTGTAGTTGT | + |
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Preference number: 6 (lower is better) Translates to: TEKACTACVCWG*KAEGRACSCSC Trigger: ACAACTACAACTGCAGGCTCTGCCTTCAGCTTTTCAGCCCCAACAAACACAGGCAGTACAGGCCTTCTCGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000038514.15 ENSMUST00000130156.2 ENSMUST00000135112.8 ENSMUST00000146470.2 |
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| CDS GCA 72 bp | ACCCCAAGCTGCTGCAGCTGGGCTTTAATGTTGGCTTaGTCAAAGTGGGCATACAGTGTTGTCGCTGGAACT | + |
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Preference number: 6 (lower is better) Translates to: TPSCCSWALMLA*SKWAYSVVAGT Trigger: AGTTCCAGCGACAACACTGTATGCCCACTTTGAGCAAGCCAACATTAAAGCCCAGCTGCAGCAGCTTGGGGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS GCA 72 bp | TCTGTCCTGGTCATAGAAAGGGTCACCCCAAGCTGCTaGAGCTGGGCTTTAATGTTGGCTTGCTCAAAGTGG | + |
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Preference number: 6 (lower is better) Translates to: SVLVIERVTPSC*SWALMLACSKW Trigger: CCACTTTGAGCAAGCCAACATTAAAGCCCAGCTGCAGCAGCTTGGGGTGACCCTTTCTATGACCAGGACAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS CAA 90 bp | AGAAAGGGTCACCCCAAGCTGCTGCAGCTGGGCTTTAATGTTGGCTaGCTCAAAGTGGGCATACAGTGTTGTCGCTGGAACTCTTCTCGA | + |
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Preference number: 6 (lower is better) Translates to: RKGHPKLLQLGFNVG*LKVGIQCCRWNSSR Trigger: TCGAGAAGAGTTCCAGCGACAACACTGTATGCCCACTTTGAGCAAGCCAACATTAAAGCCCAGCTGCAGCAGCTTGGGGTGACCCTTTCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS CAA 90 bp | GTCATAGAAAGGGTCACCCCAAGCTGCTGCAGCTGGGCTTTAATGTaGGCTTGCTCAAAGTGGGCATACAGTGTTGTCGCTGGAACTCTT | + |
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Preference number: 6 (lower is better) Translates to: VIERVTPSCCSWALM*ACSKWAYSVVAGTL Trigger: AAGAGTTCCAGCGACAACACTGTATGCCCACTTTGAGCAAGCCAACATTAAAGCCCAGCTGCAGCAGCTTGGGGTGACCCTTTCTATGAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS CAA 72 bp | CCAAGCCAGTGCCTAAACCAGTGCCAGTTCCCGTCGTaGTGCCAAAACCAGTACCAAAGCCAAAACCTTTGT | + |
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Preference number: 6 (lower is better) Translates to: PSQCLNQCQFPS*CQNQYQSQNLC Trigger: ACAAAGGTTTTGGCTTTGGTACTGGTTTTGGCACAACGACGGGAACTGGCACTGGTTTAGGCACTGGCTTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS CAA 72 bp | CCAAACCCACCTGCACTCGCCAGACTGTTACCAAAATaGAACGGAGTCGCCGAGGTAGTAGAAACACCGAAA | + |
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Preference number: 6 (lower is better) Translates to: PNPPALARLLPK*NGVAEVVETPK Trigger: TTTCGGTGTTTCTACTACCTCGGCGACTCCGTTCAATTTTGGTAACAGTCTGGCGAGTGCAGGTGGGTTTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000130156.2 ENSMUST00000135112.8 |
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| CDS TCA 72 bp | GTGCCAAAACCAGTACCAAAGCCAAAACCTTTGTTCTaGGTGCCACCGAGAAGGCCTGTACTGCCTGTGTTT | + |
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Preference number: 6 (lower is better) Translates to: VPKPVPKPKPLF*VPPRRPVLPVF Trigger: AAACACAGGCAGTACAGGCCTTCTCGGTGGCACTCAGAACAAAGGTTTTGGCTTTGGTACTGGTTTTGGCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000038514.15 ENSMUST00000146470.2 |
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| CDS GCA 72 bp | AGCCAGTGCCTAAACCAGTGCCAGTTCCCGTCGTTGTaGCAAAACCAGTACCAAAGCCAAAACCTTTGTTCT | + |
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Preference number: 6 (lower is better) Translates to: SQCLNQCQFPSL*QNQYQSQNLCS Trigger: AGAACAAAGGTTTTGGCTTTGGTACTGGTTTTGGCACAACGACGGGAACTGGCACTGGTTTAGGCACTGGCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS CCA 72 bp | AAATATCCTTTTCCTGTTCCCCAGAAGGCCTGCAACTaGTTCCACTTTGCCAAGATGGCGTCTCTCTCATCC | + |
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Preference number: 6 (lower is better) Translates to: KYPFPVPQKACN*FHFAKMASLSS Trigger: GGATGAGAGAGACGCCATCTTGGCAAAGTGGAACCAGTTGCAGGCCTTCTGGGGAACAGGAAAAGGATATTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS CAA 90 bp | CCAAATCCTCCAAACCCACCTGCACTCGCCAGACTGTTACCAAAATaGAACGGAGTCGCCGAGGTAGTAGAAACACCGAAATTCCCAATA | + |
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Preference number: 6 (lower is better) Translates to: PNPPNPPALARLLPK*NGVAEVVETPKFPI Trigger: TATTGGGAATTTCGGTGTTTCTACTACCTCGGCGACTCCGTTCAATTTTGGTAACAGTCTGGCGAGTGCAGGTGGGTTTGGAGGATTTGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000130156.2 ENSMUST00000135112.8 |
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| CDS GCA 72 bp | CAAAACCAGTACCAAAGCCAAAACCTTTGTTCTGAGTaGCACCGAGAAGGCCTGTACTGCCTGTGTTTGTTG | + |
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Preference number: 6 (lower is better) Translates to: QNQYQSQNLCSE*HREGLYCLCLL Trigger: CAACAAACACAGGCAGTACAGGCCTTCTCGGTGGCACTCAGAACAAAGGTTTTGGCTTTGGTACTGGTTTTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000038514.15 ENSMUST00000135112.8 ENSMUST00000146470.2 |
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| CDS CCA 72 bp | CAGTGTTGTCGCTGGAACTCTTCTCGAGGTGCCATTTaGAGAACGCTCAACAACATAAATGACAACTTCCGT | + |
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Preference number: 6 (lower is better) Translates to: QCCRWNSSRGAI*RTLNNINDNFR Trigger: ACGGAAGTTGTCATTTATGTTGTTGAGCGTTCTCCAAATGGCACCTCGAGAAGAGTTCCAGCGACAACACTG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS CAA 90 bp | ACCATTGGTACAGGAATTAACTTTTCAGAGTCTGGGTTATCCACCTaGGCCTGTTCCCAAATAATAGGATCAACACCTGCGGGAGGGTTT | + |
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Preference number: 6 (lower is better) Translates to: TIGTGINFSESGLST*ACSQIIGSTPAGGF Trigger: AAACCCTCCCGCAGGTGTTGATCCTATTATTTGGGAACAGGCCAAGGTGGATAACCCAGACTCTGAAAAGTTAATTCCTGTACCAATGGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS CAA 72 bp | ACAGGAATTAACTTTTCAGAGTCTGGGTTATCCACCTaGGCCTGTTCCCAAATAATAGGATCAACACCTGCG | + |
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Preference number: 6 (lower is better) Translates to: TGINFSESGLST*ACSQIIGSTPA Trigger: CGCAGGTGTTGATCCTATTATTTGGGAACAGGCCAAGGTGGATAACCCAGACTCTGAAAAGTTAATTCCTGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS CAA 72 bp | GGTCCTGTGGGAGAGCTCCATCAGTTTCCTCTTGTATaGTGCTATTTTGGCCATAGTCGTAGTTTGATTTTT | + |
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Preference number: 6 (lower is better) Translates to: GPVGELHQFPLV*CYFGHSRSLIF Trigger: AAAAATCAAACTACGACTATGGCCAAAATAGCACAATACAAGAGGAAACTGATGGAGCTCTCCCACAGGACC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS CCA 72 bp | ATGTCTTCTAGGTCATCTTTTATGATGCTAATCAAGTaGCTAAGGCCTTCCTGTTGTTGTTTCAAATGCTGC | + |
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Preference number: 6 (lower is better) Translates to: MSSRSSFMMLIK*LRPSCCCFKCC Trigger: GCAGCATTTGAAACAACAACAGGAAGGCCTTAGCCACTTGATTAGCATCATAAAAGATGACCTAGAAGACAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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| CDS TCA 72 bp | TCTGATCTTGAACCTTCAGTCTTCGAAGCAATTCTTTaGAACCCACCATTGGTACAGGAATTAACTTTTCAG | + |
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Preference number: 6 (lower is better) Translates to: SDLEPSVFEAIL*NPPLVQELTFQ Trigger: CTGAAAAGTTAATTCCTGTACCAATGGTGGGTTTCAAAGAATTGCTTCGAAGACTGAAGGTTCAAGATCAGA 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000038514.15 |
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