Pregenerated sensors for NUP43 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000040034

Ensembl transcript IDs: ENSMUST00000040135.9

Found 4 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type	Sensor	Details
CDS CCA 90 bp	TCCAACTGTAACAATTTCTGGGTTGTCACACACAATTCCTGTACATaGTGCACTGCTATAGGAGGGACTGCTGGGACCTGTATGGTAATG	+
Preference number: 5 (lower is better) Translates to: SNCNNFWVVTHNSCT*CTAIGGTAGTCMVM Trigger: CATTACCATACAGGTCCCAGCAGTCCCTCCTATAGCAGTGCACCATGTACAGGAATTGTGTGTGACAACCCAGAAATTGTTACAGTTGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040135.9
CDS GCA 72 bp	ATAGGAGGGACTGCTGGGACCTGTATGGTAATGAGCTaGAGGCCACTGCTGATTGACGGACAGGGTCTGGTT	+
Preference number: 6 (lower is better) Translates to: IGGTAGTCMVMS*RPLLIDGQGLV Trigger: AACCAGACCCTGTCCGTCAATCAGCAGTGGCCTGCAGCTCATTACCATACAGGTCCCAGCAGTCCCTCCTAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040135.9
CDS TCA 72 bp	GACCTGTATGGTAATGAGCTGCAGGCCACTGCTGATTaGCGGACAGGGTCTGGTTATTTGGATGGTGAAGAA	+
Preference number: 6 (lower is better) Translates to: DLYGNELQATAD*RTGSGYLDGEE Trigger: TTCTTCACCATCCAAATAACCAGACCCTGTCCGTCAATCAGCAGTGGCCTGCAGCTCATTACCATACAGGTC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040135.9
CDS CCA 72 bp	AACAATTTCTGGGTTGTCACACACAATTCCTGTACATaGTGCACTGCTATAGGAGGGACTGCTGGGACCTGT	+
Preference number: 6 (lower is better) Translates to: NNFWVVTHNSCT*CTAIGGTAGTC Trigger: ACAGGTCCCAGCAGTCCCTCCTATAGCAGTGCACCATGTACAGGAATTGTGTGTGACAACCCAGAAATTGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040135.9

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