Pregenerated sensors for NUP35 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026999Ensembl transcript IDs: ENSMUST00000028382.13, ENSMUST00000124377.2
Found 24 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | ATGTGGGCATCTTCTCTTCAGGTCTATCACGGCCATCTTTTAAAGTaGAAGCTACAGATGGGCTGTTTCCTTAACCAAAGGATTGTAAAA | + |
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Preference number: 1 (lower is better) Translates to: MWASSLQVYHGHLLK*KLQMGCFLNQRIVK Trigger: TTTTACAATCCTTTGGTTAAGGAAACAGCCCATCTGTAGCTTGCACTTTAAAAGATGGCCGTGATAGACCTGAAGAGAAGATGCCCACAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028382.13 |
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| 3UTR-3UTR GCA 90 bp | GTACCCGGCACTAAGCATGCACTACATCACAGAAGCACAAATGCCATGTGGGCAGGCCATCTTTTAAAGTaGAAGCTACAGATGGGCTGT | + |
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Preference number: 2 (lower is better) Translates to: VPGTKHALHHRSTNAMWAGHLLK*KLQMGC Trigger: ACAGCCCATCTGTAGCTTGCACTTTAAAAGATGGCC...TGCCCACATGGCATTTGTGCTTCTGTGATGTAGTGCATGCTTAGTGCCGGGTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028382.13 |
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| 3UTR-3UTR CCA 90 bp | TACATCACAGAAGCACAAATGCCATGTGGGCATCTTCTCTTCAGGTCTATCACGAGTGCAAGCTACAGATaGGCTGTTTCCTTAACCAAA | + |
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Preference number: 2 (lower is better) Translates to: YITEAQMPCGHLLFRSITSASYR*AVSLTK Trigger: TTTGGTTAAGGAAACAGCCCATCTGTAGCTTGCACT...CGTGATAGACCTGAAGAGAAGATGCCCACATGGCATTTGTGCTTCTGTGATGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028382.13 |
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| 3UTR-3UTR CCA 90 bp | ATCCGCCTTCTCATGAAAGCCAGTGAGACTCACTTGAAGCTCAATCATTTAATTAGCACAAATGCCATGTaGGCATCTTCTCTTCAGGTC | + |
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Preference number: 2 (lower is better) Translates to: IRLLMKASETHLKLNHLISTNAM*ASSLQV Trigger: GACCTGAAGAGAAGATGCCCACATGGCATTTGTGCT...AATTAAATGATTGAGCTTCAAGTGAGTCTCACTGGCTTTCATGAGAAGGCGGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028382.13 |
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| 3UTR-3UTR GCA 90 bp | ATCCGCCTTCTCATGAAAGCCAGTGAGACTCACTTGAAGCTCAATCATTTAATTTCACAGAAGCACAAATaGCATGTGGGCATCTTCTCT | + |
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Preference number: 2 (lower is better) Translates to: IRLLMKASETHLKLNHLISQKHK*HVGIFS Trigger: AGAGAAGATGCCCACATGGCATTTGTGCTTCTGTGA...AATTAAATGATTGAGCTTCAAGTGAGTCTCACTGGCTTTCATGAGAAGGCGGAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028382.13 |
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| 3UTR CCA 72 bp | AAGCATGCACTACATCACAGAAGCACAAATGCCATGTaGGCATCTTCTCTTCAGGTCTATCACGGCCATCTT | + |
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Preference number: 3 (lower is better) Translates to: KHALHHRSTNAM*ASSLQVYHGHL Trigger: AAGATGGCCGTGATAGACCTGAAGAGAAGATGCCCACATGGCATTTGTGCTTCTGTGATGTAGTGCATGCTT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028382.13 |
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| CDS-3UTR CCA 90 bp | GCCATGTGGGCATCTTCTCTTCAGGTCTATCACGGCCATCTTTTAAAGTGCAAGATGAGCAGGGACAACTaGCTGTGGTGGGGAGCCCCC | + |
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Preference number: 4 (lower is better) Translates to: AMWASSLQVYHGHLLKCKMSRDN*LWWGAP Trigger: GGGGGCTCCCCACCACAGCCAGTTGTCCCTGCTCAT...CTTGCACTTTAAAAGATGGCCGTGATAGACCTGAAGAGAAGATGCCCACATGGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000028382.13 |
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| CDS-3UTR TCA 90 bp | ATCACAGAAGCACAAATGCCATGTGGGCATCTTCTCTTCAGGTCTATCACGGCCGTACTCCATCGCTCTTaGCACAAGGCTCTCATCCTT | + |
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Preference number: 4 (lower is better) Translates to: ITEAQMPCGHLLFRSITAVLHRS*HKALIL Trigger: AAGGATGAGAGCCTTGTGTCAAGAGCGATGGAGTAC...GGCCGTGATAGACCTGAAGAGAAGATGCCCACATGGCATTTGTGCTTCTGTGAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028382.13 |
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| CDS-3UTR GCA 90 bp | AGAAGCACAAATGCCATGTGGGCATCTTCTCTTCAGGTCTATCACGGCCATCTTAGTGGAGGCCTTGTATaGTGTGGCAAGAGGCCTCAT | + |
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Preference number: 4 (lower is better) Translates to: RSTNAMWASSLQVYHGHLSGGLV*CGKRPH Trigger: ATGAGGCCTCTTGCCACAGCATACAAGGCCTCCACT...AAGATGGCCGTGATAGACCTGAAGAGAAGATGCCCACATGGCATTTGTGCTTCT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028382.13 |
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| CDS-3UTR TCA 90 bp | TACCCGGCACTAAGCATGCACTACATCACAGAAGCACAAATGCCATGTGGGCATAGGACTCTGCAACAATaGAATGTTTGCCTGTCTTCT | + |
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Preference number: 4 (lower is better) Translates to: YPALSMHYITEAQMPCGHRTLQQ*NVCLSS Trigger: AGAAGACAGGCAAACATTTCATTGTTGCAGAGTCCT...ATGCCCACATGGCATTTGTGCTTCTGTGATGTAGTGCATGCTTAGTGCCGGGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028382.13 |
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| CDS-3UTR CCA 90 bp | TACCCGGCACTAAGCATGCACTACATCACAGAAGCACAAATGCCATGTGGGCATGATACTTCTCACAGGTaGAGCTCCACTCTTATCTTT | + |
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Preference number: 4 (lower is better) Translates to: YPALSMHYITEAQMPCGHDTSHR*SSTLIF Trigger: AAAGATAAGAGTGGAGCTCCACCTGTGAGAAGTATC...ATGCCCACATGGCATTTGTGCTTCTGTGATGTAGTGCATGCTTAGTGCCGGGTA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028382.13 |
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| CDS-3UTR CCA 90 bp | ATCACAGAAGCACAAATGCCATGTGGGCATCTTCTCTTCAGGTCTATCACGGCCTTGACCAATGTTTGCTaGACTAAACATGCTTTGCCC | + |
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Preference number: 4 (lower is better) Translates to: ITEAQMPCGHLLFRSITALTNVC*TKHALP Trigger: GGGCAAAGCATGTTTAGTCCAGCAAACATTGGTCAA...GGCCGTGATAGACCTGAAGAGAAGATGCCCACATGGCATTTGTGCTTCTGTGAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028382.13 |
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| CDS-3UTR TCA 90 bp | TCTCTTCAGGTCTATCACGGCCATCTTTTAAAGTGCAAGCTACAGATGGGCTGTCTTTGGAGATGTAGGTaGACCCAACATCATTGGTTC | + |
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Preference number: 4 (lower is better) Translates to: SLQVYHGHLLKCKLQMGCLWRCR*TQHHWF Trigger: GAACCAATGATGTTGGGTTCACCTACATCTCCAAAG...ACAGCCCATCTGTAGCTTGCACTTTAAAAGATGGCCGTGATAGACCTGAAGAGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028382.13 |
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| CDS-3UTR GCA 90 bp | TGCACTACATCACAGAAGCACAAATGCCATGTGGGCATCTTCTCTTCAGGTCTAGGACTAAACATGCTTTaGCCAGGTACAGGAGTTGTA | + |
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Preference number: 4 (lower is better) Translates to: CTTSQKHKCHVGIFSSGLGLNML*PGTGVV Trigger: TACAACTCCTGTACCTGGGCAAAGCATGTTTAGTCC...TAGACCTGAAGAGAAGATGCCCACATGGCATTTGTGCTTCTGTGATGTAGTGCA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028382.13 |
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| CDS-3UTR CCA 90 bp | AGAAGCACAAATGCCATGTGGGCATCTTCTCTTCAGGTCTATCACGGCCATCTTGCTCTCATCCTTCTTTaGTGTCTGTCTGTCAGAAAT | + |
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Preference number: 4 (lower is better) Translates to: RSTNAMWASSLQVYHGHLALILL*CLSVRN Trigger: ATTTCTGACAGACAGACACCAAAGAAGGATGAGAGC...AAGATGGCCGTGATAGACCTGAAGAGAAGATGCCCACATGGCATTTGTGCTTCT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028382.13 |
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| CDS-3UTR GCA 90 bp | AGAAGCACAAATGCCATGTGGGCATCTTCTCTTCAGGTCTATCACGGCCATCTTTGGTTGACCAATGTTTaGTGGACTAAACATGCTTTG | + |
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Preference number: 4 (lower is better) Translates to: RSTNAMWASSLQVYHGHLWLTNV*WTKHAL Trigger: CAAAGCATGTTTAGTCCAGCAAACATTGGTCAACCA...AAGATGGCCGTGATAGACCTGAAGAGAAGATGCCCACATGGCATTTGTGCTTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028382.13 |
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| CDS-3UTR GCA 90 bp | AGAAGCACAAATGCCATGTGGGCATCTTCTCTTCAGGTCTATCACGGCCATCTTTATATAAGAAGCAGATaGCTGTGGAAACCCAAACAC | + |
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Preference number: 4 (lower is better) Translates to: RSTNAMWASSLQVYHGHLYIRSR*LWKPKH Trigger: GTGTTTGGGTTTCCACAGGCATCTGCTTCTTATATA...AAGATGGCCGTGATAGACCTGAAGAGAAGATGCCCACATGGCATTTGTGCTTCT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028382.13 |
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| CDS-3UTR CAA 90 bp | CCCGGCACTAAGCATGCACTACATCACAGAAGCACAAATGCCATGTGGGCATCTGGGCAGGAGATAGTGTaGTCTTTCGTGGTTGACCAA | + |
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Preference number: 5 (lower is better) Translates to: PGTKHALHHRSTNAMWASGQEIV*SFVVDQ Trigger: TTGGTCAACCACGAAAGACAACACTATCTCCTGCCC...AGATGCCCACATGGCATTTGTGCTTCTGTGATGTAGTGCATGCTTAGTGCCGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028382.13 |
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| CDS-3UTR CAA 90 bp | CTTCTCATGAAAGCCAGTGAGACTCACTTGAAGCTCAATCATTTAATTGACCGCTTGAAGTCAAAGGCGTaGATCCAAGTCCTGGGCTGG | + |
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Preference number: 5 (lower is better) Translates to: LLMKASETHLKLNHLIDRLKSKA*IQVLGW Trigger: CCAGCCCAGGACTTGGATCAACGCCTTTGACTTCAA...GCGGTCAATTAAATGATTGAGCTTCAAGTGAGTCTCACTGGCTTTCATGAGAAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028382.13 |
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| CDS-3UTR CAA 90 bp | GCCATGTGGGCATCTTCTCTTCAGGTCTATCACGGCCATCTTTTAAAGTGCAAGTGTTGTCTTTCGTGGTaGACCAATGTTTGCTGGACT | + |
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Preference number: 5 (lower is better) Translates to: AMWASSLQVYHGHLLKCKCCLSW*TNVCWT Trigger: AGTCCAGCAAACATTGGTCAACCACGAAAGACAACA...CTTGCACTTTAAAAGATGGCCGTGATAGACCTGAAGAGAAGATGCCCACATGGC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000028382.13 |
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| CDS-3UTR CAA 90 bp | ATCACAGAAGCACAAATGCCATGTGGGCATCTTCTCTTCAGGTCTATCACGGCCGCAACAATGAAATGTTaGCCTGTCTTCTTGAAGTCA | + |
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Preference number: 5 (lower is better) Translates to: ITEAQMPCGHLLFRSITAATMKC*PVFLKS Trigger: TGACTTCAAGAAGACAGGCAAACATTTCATTGTTGC...GGCCGTGATAGACCTGAAGAGAAGATGCCCACATGGCATTTGTGCTTCTGTGAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028382.13 |
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| CDS-3UTR CAA 90 bp | ATCCGCCTTCTCATGAAAGCCAGTGAGACTCACTTGAAGCTCAATCATTTAATTGGCTCTCATCCTTCTTaGGTGTCTGTCTGTCAGAAA | + |
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Preference number: 5 (lower is better) Translates to: IRLLMKASETHLKLNHLIGSHPS*VSVCQK Trigger: TTTCTGACAGACAGACACCAAAGAAGGATGAGAGCC...AATTAAATGATTGAGCTTCAAGTGAGTCTCACTGGCTTTCATGAGAAGGCGGAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028382.13 |
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| CDS-3UTR CAA 90 bp | CTTCTCATGAAAGCCAGTGAGACTCACTTGAAGCTCAATCATTTAATTGACCGCGGCTTGCAATTTAGATaGGTAACGAATATGCATCCA | + |
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Preference number: 5 (lower is better) Translates to: LLMKASETHLKLNHLIDRGLQFR*VTNMHP Trigger: TGGATGCATATTCGTTACCAATCTAAATTGCAAGCC...GCGGTCAATTAAATGATTGAGCTTCAAGTGAGTCTCACTGGCTTTCATGAGAAG 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000028382.13 |
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| CDS TCA 72 bp | ATACTTCTCACAGGTGGAGCTCCACTCTTATCTTTATaGGCAGGGACAACTGGCTGTGGTGGGGAGCCCCCT | + |
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Preference number: 6 (lower is better) Translates to: ILLTGGAPLLSL*AGTTGCGGEPP Trigger: AGGGGGCTCCCCACCACAGCCAGTTGTCCCTGCTCATAAAGATAAGAGTGGAGCTCCACCTGTGAGAAGTAT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000028382.13 ENSMUST00000124377.2 |
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