RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NUP133 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039509

Ensembl transcript IDs: ENSMUST00000044795.8

Found 196 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp TATGCCATTCTGAGGACAGACTGGCAGTGGTGGGGGAGGCCACACTaGGAACACTCAGAATGTGGGACCAACCATGACAGCCCGAAACAC +
Preference number: 1 (lower is better)
Translates to: YAILRTDWQWWGRPH*EHSECGTNHDSPKH
Trigger: GTGTTTCGGGCTGTCATGGTTGGTCCCACATTCTGAGTGTTCCCAGTGTGGCCTCCCCCACCACTGCCAGTCTGTCCTCAGAATGGCATA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR TCA 90 bp CCCCTGTGCTCTGTACAGGTTGCCAGGGCCCTTTCAGGTCCTGACTaGCTCACACATCCTCAGAATACAGCACACTCACCTCAGGGACAA +
Preference number: 1 (lower is better)
Translates to: PLCSVQVARALSGPD*LTHPQNTAHSPQGQ
Trigger: TTGTCCCTGAGGTGAGTGTGCTGTATTCTGAGGATGTGTGAGTCAGTCAGGACCTGAAAGGGCCCTGGCAACCTGTACAGAGCACAGGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR TCA 90 bp TTTCCCCCTGTGCTCTGTACAGGTTGCCAGGGCCCTTTCAGGTCCTaGCTGACTCACACATCCTCAGAATACAGCACACTCACCTCAGGG +
Preference number: 1 (lower is better)
Translates to: FPPVLCTGCQGPFRS*LTHTSSEYSTLTSG
Trigger: CCCTGAGGTGAGTGTGCTGTATTCTGAGGATGTGTGAGTCAGTCAGGACCTGAAAGGGCCCTGGCAACCTGTACAGAGCACAGGGGGAAA
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR CCA 90 bp GAGGCTGGAGAAGGGCAGCTACACAGAAGCAAGGGTGACTTCAGGTaGAAGAGGAGGAGGAAATACCTTACAGCTGAAAAAGAGCATCAG +
Preference number: 1 (lower is better)
Translates to: EAGEGQLHRSKGDFR*KRRRKYLTAEKEHQ
Trigger: CTGATGCTCTTTTTCAGCTGTAAGGTATTTCCTCCTCCTCTTCCACCTGAAGTCACCCTTGCTTCTGTGTAGCTGCCCTTCTCCAGCCTC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR CCA 90 bp CAAAGGTGTGCTAAGTACTCACCATTGCCCACACAATACAAAAGGTaGTCGACTGAAGCTCATTTCAAAACAGAAGCCCAGCTTCCAGGT +
Preference number: 1 (lower is better)
Translates to: QRCAKYSPLPTQYKR*STEAHFKTEAQLPG
Trigger: ACCTGGAAGCTGGGCTTCTGTTTTGAAATGAGCTTCAGTCGACCACCTTTTGTATTGTGTGGGCAATGGTGAGTACTTAGCACACCTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR CAA 90 bp CAGGGCTGGTATTGGACAACCAGTTGGGGAGCGAGGCAACCTGTTTaGTTTTGCTGCCTCTTTGGACCGAGGGAGGCTGGAGAAGGGCAG +
Preference number: 2 (lower is better)
Translates to: QGWYWTTSWGARQPV*FCCLFGPREAGEGQ
Trigger: CTGCCCTTCTCCAGCCTCCCTCGGTCCAAAGAGGCAGCAAAACAAAACAGGTTGCCTCGCTCCCCAACTGGTTGTCCAATACCAGCCCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR-3UTR CCA 90 bp CTGTCACTGTCTTCAGACACACCAGAAGAGGGCCCTGGGACCTATTACAGATGGTGGACCGAGGGAGGCTaGAGAAGGGCAGCTACACAG +
Preference number: 2 (lower is better)
Translates to: LSLSSDTPEEGPGTYYRWWTEGG*RRAATQ
Trigger: CTGTGTAGCTGCCCTTCTCCAGCCTCCCTCGGTCCA...CCATCTGTAATAGGTCCCAGGGCCCTCTTCTGGTGTGTCTGAAGACAGTGACAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR CAA 90 bp CTGGTATTGGACAACCAGTTGGGGAGCGAGGCAACCTGTTTTGTTTaGCTGCCTCTTTGGACCGAGGGAGGCTGGAGAAGGGCAGCTACA +
Preference number: 2 (lower is better)
Translates to: LVLDNQLGSEATCFV*LPLWTEGGWRRAAT
Trigger: TGTAGCTGCCCTTCTCCAGCCTCCCTCGGTCCAAAGAGGCAGCAAAACAAAACAGGTTGCCTCGCTCCCCAACTGGTTGTCCAATACCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR-3UTR GCA 90 bp CTGTCACTGTCTTCAGACACACCAGAAGAGGGCCCTGGGACCTATTACAGATGGGCAGGCACTTCCCTTTaGCTCCGACCAAGAGATCAG +
Preference number: 2 (lower is better)
Translates to: LSLSSDTPEEGPGTYYRWAGTSL*LRPRDQ
Trigger: CTGATCTCTTGGTCGGAGGCAAAGGGAAGTGCCTGC...CCATCTGTAATAGGTCCCAGGGCCCTCTTCTGGTGTGTCTGAAGACAGTGACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR-3UTR CCA 90 bp TTCAGACACACCAGAAGAGGGCCCTGGGACCTATTACAGATGGTAGTGAGCCACGTTTTGCTGCCTCTTTaGACCGAGGGAGGCTGGAGA +
Preference number: 2 (lower is better)
Translates to: FRHTRRGPWDLLQMVVSHVLLPL*TEGGWR
Trigger: TCTCCAGCCTCCCTCGGTCCAAAGAGGCAGCAAAAC...GTGGCTCACTACCATCTGTAATAGGTCCCAGGGCCCTCTTCTGGTGTGTCTGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR-3UTR TCA 90 bp GGACCAACCATGACAGCCCGAAACACCATGAATTTGTCTTGCAGACCTCTGGCTACACAGAAGCAAGGGTaGCTTCAGGTGGAAGAGGAG +
Preference number: 2 (lower is better)
Translates to: GPTMTARNTMNLSCRPLATQKQG*LQVEEE
Trigger: CTCCTCTTCCACCTGAAGTCACCCTTGCTTCTGTGT...AGCCAGAGGTCTGCAAGACAAATTCATGGTGTTTCGGGCTGTCATGGTTGGTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR-3UTR TCA 90 bp AGCAGGAGAAGGAAAACTGGAGCTCCTCTGAGAACAGAAGTCCAAAGGTGTGCTGGCCCTTTCAGGTCCTaGCTGACTCACACATCCTCA +
Preference number: 2 (lower is better)
Translates to: SRRRKTGAPLRTEVQRCAGPFRS*LTHTSS
Trigger: TGAGGATGTGTGAGTCAGTCAGGACCTGAAAGGGCC...AGCACACCTTTGGACTTCTGTTCTCAGAGGAGCTCCAGTTTTCCTTCTCCTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR-3UTR TCA 90 bp CCATCCCAGCAGGAGAAGGAAAACTGGAGCTCCTCTGAGAACAGAAGTCCAAAGCAGCCCGAAACACCATaGATTTGTCTTGCAGACCTC +
Preference number: 2 (lower is better)
Translates to: PSQQEKENWSSSENRSPKQPETP*ICLADL
Trigger: GAGGTCTGCAAGACAAATTCATGGTGTTTCGGGCTG...CTTTGGACTTCTGTTCTCAGAGGAGCTCCAGTTTTCCTTCTCCTGCTGGGATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR-3UTR GCA 90 bp ATCAGCTTCTCAGAGACTCCCAGAGTGCCACATGCAGAGGGCAATCTGTTTTCCCAACCTGTTTTGTTTTaGTGCCTCTTTGGACCGAGG +
Preference number: 2 (lower is better)
Translates to: ISFSETPRVPHAEGNLFSQPVLF*CLFGPR
Trigger: CCTCGGTCCAAAGAGGCAGCAAAACAAAACAGGTTG...GGAAAACAGATTGCCCTCTGCATGTGGCACTCTGGGAGTCTCTGAGAAGCTGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR-3UTR CCA 90 bp GCTAAGTACTCACCATTGCCCACACAATACAAAAGGTGGTCGACTGAAGCTCATCAGACAGGTAGGCCATaGCCAGAGCTCTCAGAGCAA +
Preference number: 2 (lower is better)
Translates to: AKYSPLPTQYKRWSTEAHQTGRP*PELSEQ
Trigger: TTGCTCTGAGAGCTCTGGCCATGGCCTACCTGTCTG...ATGAGCTTCAGTCGACCACCTTTTGTATTGTGTGGGCAATGGTGAGTACTTAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR-3UTR GCA 90 bp GCTAAGTACTCACCATTGCCCACACAATACAAAAGGTGGTCGACTGAAGCTCATAAACCTTTCCCCCTGTaGTCTGTACAGGTTGCCAGG +
Preference number: 2 (lower is better)
Translates to: AKYSPLPTQYKRWSTEAHKPFPL*SVQVAR
Trigger: CCTGGCAACCTGTACAGAGCACAGGGGGAAAGGTTT...ATGAGCTTCAGTCGACCACCTTTTGTATTGTGTGGGCAATGGTGAGTACTTAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR-3UTR CCA 90 bp AGCAGGAGAAGGAAAACTGGAGCTCCTCTGAGAACAGAAGTCCAAAGGTGTGCTTGTTCTAGCCAGGGCTaGTGTGTACACTTGCAGTTT +
Preference number: 2 (lower is better)
Translates to: SRRRKTGAPLRTEVQRCACSSQG*CVHLQF
Trigger: AAACTGCAAGTGTACACACCAGCCCTGGCTAGAACA...AGCACACCTTTGGACTTCTGTTCTCAGAGGAGCTCCAGTTTTCCTTCTCCTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR-3UTR GCA 90 bp CTGTCACTGTCTTCAGACACACCAGAAGAGGGCCCTGGGACCTATTACAGATGGCATAGAAAACCTGGTTaGTGCAGACAAAACAGACTT +
Preference number: 2 (lower is better)
Translates to: LSLSSDTPEEGPGTYYRWHRKPG*CRQNRL
Trigger: AAGTCTGTTTTGTCTGCAGCAACCAGGTTTTCTATG...CCATCTGTAATAGGTCCCAGGGCCCTCTTCTGGTGTGTCTGAAGACAGTGACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR-3UTR CCA 90 bp GGACCAACCATGACAGCCCGAAACACCATGAATTTGTCTTGCAGACCTCTGGCTTTAGACCCAGGGTTTTaGTTTCTAGGCCACAGTATA +
Preference number: 2 (lower is better)
Translates to: GPTMTARNTMNLSCRPLALDPGF*FLGHSI
Trigger: TATACTGTGGCCTAGAAACCAAAACCCTGGGTCTAA...AGCCAGAGGTCTGCAAGACAAATTCATGGTGTTTCGGGCTGTCATGGTTGGTCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR-3UTR GCA 90 bp GCTAAGTACTCACCATTGCCCACACAATACAAAAGGTGGTCGACTGAAGCTCATGAGCCACCATGTGGTTaGTGGGAATTGAATTCAAGT +
Preference number: 2 (lower is better)
Translates to: AKYSPLPTQYKRWSTEAHEPPCG*WELNSS
Trigger: ACTTGAATTCAATTCCCAGCAACCACATGGTGGCTC...ATGAGCTTCAGTCGACCACCTTTTGTATTGTGTGGGCAATGGTGAGTACTTAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR-3UTR GCA 90 bp CAGAAGCCCAGCTTCCAGGTCCACCAGTTACTTGTGTTTATTTTGGATATGAGCGCTGGTGTGTACACTTaGAGTTTTAGGACTTGGGAA +
Preference number: 2 (lower is better)
Translates to: QKPSFQVHQLLVFILDMSAGVYT*SFRTWE
Trigger: TTCCCAAGTCCTAAAACTGCAAGTGTACACACCAGC...GCTCATATCCAAAATAAACACAAGTAACTGGTGGACCTGGAAGCTGGGCTTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR-3UTR GCA 90 bp GCTAAGTACTCACCATTGCCCACACAATACAAAAGGTGGTCGACTGAAGCTCATATAAACAGACACACTTaGTCAGCCCATAGAACGTTA +
Preference number: 2 (lower is better)
Translates to: AKYSPLPTQYKRWSTEAHINRHT*SAHRTL
Trigger: TAACGTTCTATGGGCTGAGCAAGTGTGTCTGTTTAT...ATGAGCTTCAGTCGACCACCTTTTGTATTGTGTGGGCAATGGTGAGTACTTAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR-3UTR TCA 90 bp GCTAAGTACTCACCATTGCCCACACAATACAAAAGGTGGTCGACTGAAGCTCATACAGTCTTAGCTACCTaGCTTAGAAACAAATCATTC +
Preference number: 2 (lower is better)
Translates to: AKYSPLPTQYKRWSTEAHTVLAT*LRNKSF
Trigger: GAATGATTTGTTTCTAAGTCAGGTAGCTAAGACTGT...ATGAGCTTCAGTCGACCACCTTTTGTATTGTGTGGGCAATGGTGAGTACTTAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR-3UTR CCA 90 bp AAGACTTATCCATTATTGATGGATGCAGTGGCCCACACTTTTAATCCTTTAATTACCAGAAGAGGGCCCTaGGACCTATTACAGATGGTA +
Preference number: 2 (lower is better)
Translates to: KTYPLLMDAVAHTFNPLITRRGP*DLLQMV
Trigger: TACCATCTGTAATAGGTCCCAGGGCCCTCTTCTGGT...AATTAAAGGATTAAAAGTGTGGGCCACTGCATCCATCAATAATGGATAAGTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR-3UTR CCA 90 bp AACATCTTACTAAAACACTTTAAGACTTATCCATTATTGATGGATGCAGTGGCCCCACCATGTGGTTGCTaGGAATTGAATTCAAGTCCT +
Preference number: 2 (lower is better)
Translates to: NILLKHFKTYPLLMDAVAPPCGC*ELNSSP
Trigger: AGGACTTGAATTCAATTCCCAGCAACCACATGGTGG...GGCCACTGCATCCATCAATAATGGATAAGTCTTAAAGTGTTTTAGTAAGATGTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR CCA 72 bp GGGAGCGAGGCAACCTGTTTTGTTTTGCTGCCTCTTTaGACCGAGGGAGGCTGGAGAAGGGCAGCTACACAG +
Preference number: 3 (lower is better)
Translates to: GSEATCFVLLPL*TEGGWRRAATQ
Trigger: CTGTGTAGCTGCCCTTCTCCAGCCTCCCTCGGTCCAAAGAGGCAGCAAAACAAAACAGGTTGCCTCGCTCCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR GCA 72 bp CCGACCAAGAGATCAGCTTCTCAGAGACTCCCAGAGTaGCACATGCAGAGGGCAATCTGTTTTCCCCGTCCC +
Preference number: 3 (lower is better)
Translates to: PTKRSASQRLPE*HMQRAICFPRP
Trigger: GGGACGGGGAAAACAGATTGCCCTCTGCATGTGGCACTCTGGGAGTCTCTGAGAAGCTGATCTCTTGGTCGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR TCA 72 bp GGAGGCTGGAGAAGGGCAGCTACACAGAAGCAAGGGTaGCTTCAGGTGGAAGAGGAGGAGGAAATACCTTAC +
Preference number: 3 (lower is better)
Translates to: GGWRRAATQKQG*LQVEEEEEIPY
Trigger: GTAAGGTATTTCCTCCTCCTCTTCCACCTGAAGTCACCCTTGCTTCTGTGTAGCTGCCCTTCTCCAGCCTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR TCA 72 bp GTGCTCTGTACAGGTTGCCAGGGCCCTTTCAGGTCCTaGCTGACTCACACATCCTCAGAATACAGCACACTC +
Preference number: 3 (lower is better)
Translates to: VLCTGCQGPFRS*LTHTSSEYSTL
Trigger: GAGTGTGCTGTATTCTGAGGATGTGTGAGTCAGTCAGGACCTGAAAGGGCCCTGGCAACCTGTACAGAGCAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR GCA 72 bp CGTCCCCTGCCATCTCCAACACTTCCTCACTTCCGCTaGCCTGCTCTCCAACCTGTAGCATCTTTTAATTGC +
Preference number: 3 (lower is better)
Translates to: RPLPSPTLPHFR*PALQPVASFNC
Trigger: GCAATTAAAAGATGCTACAGGTTGGAGAGCAGGGCAGCGGAAGTGAGGAAGTGTTGGAGATGGCAGGGGACG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR TCA 72 bp AAGTCCTCTGGAAGAGTAGACAGCGCTCTTAACCACTaGGCCATCTCTCCAGCCCTGCCCCTTGCTTGTAAT +
Preference number: 3 (lower is better)
Translates to: KSSGRVDSALNH*AISPALPLACN
Trigger: ATTACAAGCAAGGGGCAGGGCTGGAGAGATGGCTCAGTGGTTAAGAGCGCTGTCTACTCTTCCAGAGGACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR CCA 72 bp ACTGTCACTGTCTTCAGACACACCAGAAGAGGGCCCTaGGACCTATTACAGATGGTAGTGAGCCACCATGTG +
Preference number: 3 (lower is better)
Translates to: TVTVFRHTRRGP*DLLQMVVSHHV
Trigger: CACATGGTGGCTCACTACCATCTGTAATAGGTCCCAGGGCCCTCTTCTGGTGTGTCTGAAGACAGTGACAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR CCA 72 bp CCTCAGAATACAGCACACTCACCTCAGGGACAAGGGTaGCTGCTGCCATTCACAGTCCTAACTAGTTCATGC +
Preference number: 3 (lower is better)
Translates to: PQNTAHSPQGQG*LLPFTVLTSSC
Trigger: GCATGAACTAGTTAGGACTGTGAATGGCAGCAGCCACCCTTGTCCCTGAGGTGAGTGTGCTGTATTCTGAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR-3UTR CAA 90 bp AGCAGGAGAAGGAAAACTGGAGCTCCTCTGAGAACAGAAGTCCAAAGGTGTGCTGTATTGGACAACCAGTaGGGGAGCGAGGCAACCTGT +
Preference number: 3 (lower is better)
Translates to: SRRRKTGAPLRTEVQRCAVLDNQ*GSEATC
Trigger: ACAGGTTGCCTCGCTCCCCAACTGGTTGTCCAATAC...AGCACACCTTTGGACTTCTGTTCTCAGAGGAGCTCCAGTTTTCCTTCTCCTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR-3UTR CAA 90 bp AGCAGGAGAAGGAAAACTGGAGCTCCTCTGAGAACAGAAGTCCAAAGGTGTGCTAGCAGGCACTTCCCTTaGCCTCCGACCAAGAGATCA +
Preference number: 3 (lower is better)
Translates to: SRRRKTGAPLRTEVQRCASRHFP*PPTKRS
Trigger: TGATCTCTTGGTCGGAGGCAAAGGGAAGTGCCTGCT...AGCACACCTTTGGACTTCTGTTCTCAGAGGAGCTCCAGTTTTCCTTCTCCTGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR-3UTR CAA 90 bp AGCAGGAGAAGGAAAACTGGAGCTCCTCTGAGAACAGAAGTCCAAAGGTGTGCTTTTTCAGGGCTGGTATaGGACAACCAGTTGGGGAGC +
Preference number: 3 (lower is better)
Translates to: SRRRKTGAPLRTEVQRCAFSGLV*DNQLGS
Trigger: GCTCCCCAACTGGTTGTCCAATACCAGCCCTGAAAA...AGCACACCTTTGGACTTCTGTTCTCAGAGGAGCTCCAGTTTTCCTTCTCCTGCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR GCA 72 bp CCAACCATGACAGCCCGAAACACCATGAATTTGTCTTaGAGACCTCTGGCTCTCCCCATAGCATCCAGTCAA +
Preference number: 3 (lower is better)
Translates to: PTMTARNTMNLS*RPLALPIASSQ
Trigger: TTGACTGGATGCTATGGGGAGAGCCAGAGGTCTGCAAGACAAATTCATGGTGTTTCGGGCTGTCATGGTTGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR-3UTR CAA 90 bp GGACCAACCATGACAGCCCGAAACACCATGAATTTGTCTTGCAGACCTCTGGCTGTTAGACCCAGGGTTTaGGTTTCTAGGCCACAGTAT +
Preference number: 3 (lower is better)
Translates to: GPTMTARNTMNLSCRPLAVRPRV*VSRPQY
Trigger: ATACTGTGGCCTAGAAACCAAAACCCTGGGTCTAAC...AGCCAGAGGTCTGCAAGACAAATTCATGGTGTTTCGGGCTGTCATGGTTGGTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR-3UTR CAA 90 bp CCATCCCAGCAGGAGAAGGAAAACTGGAGCTCCTCTGAGAACAGAAGTCCAAAGGCTAAGTACTCACCATaGCCCACACAATACAAAAGG +
Preference number: 3 (lower is better)
Translates to: PSQQEKENWSSSENRSPKAKYSP*PTQYKR
Trigger: CCTTTTGTATTGTGTGGGCAATGGTGAGTACTTAGC...CTTTGGACTTCTGTTCTCAGAGGAGCTCCAGTTTTCCTTCTCCTGCTGGGATGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR GCA 72 bp GTTTTTATTAAGGCAATGCAGATGCATGCAAGGACCTaGCATCCCAGCAGGAGAAGGAAAACTGGAGCTCCT +
Preference number: 3 (lower is better)
Translates to: VFIKAMQMHART*HPSRRRKTGAP
Trigger: AGGAGCTCCAGTTTTCCTTCTCCTGCTGGGATGGCAGGTCCTTGCATGCATCTGCATTGCCTTAATAAAAAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR-3UTR CAA 90 bp AGCAGGAGAAGGAAAACTGGAGCTCCTCTGAGAACAGAAGTCCAAAGGTGTGCTTGTGGTTGCTGGGAATaGAATTCAAGTCCTCTGGAA +
Preference number: 3 (lower is better)
Translates to: SRRRKTGAPLRTEVQRCACGCWE*NSSPLE
Trigger: TTCCAGAGGACTTGAATTCAATTCCCAGCAACCACA...AGCACACCTTTGGACTTCTGTTCTCAGAGGAGCTCCAGTTTTCCTTCTCCTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR GCA 72 bp CGCGGCTCCCATATAAAGCATAGAAAACCTGGTTGCTaGAGACAAAACAGACTTCAGGTTGATCCAGACCTA +
Preference number: 3 (lower is better)
Translates to: RGSHIKHRKPGC*RQNRLQVDPDL
Trigger: TAGGTCTGGATCAACCTGAAGTCTGTTTTGTCTGCAGCAACCAGGTTTTCTATGCTTTATATGGGAGCCGCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR-3UTR CAA 90 bp CAGAAGCCCAGCTTCCAGGTCCACCAGTTACTTGTGTTTATTTTGGATATGAGCAAGACTTATCCATTATaGATGGATGCAGTGGCCCAC +
Preference number: 3 (lower is better)
Translates to: QKPSFQVHQLLVFILDMSKTYPL*MDAVAH
Trigger: GTGGGCCACTGCATCCATCAATAATGGATAAGTCTT...GCTCATATCCAAAATAAACACAAGTAACTGGTGGACCTGGAAGCTGGGCTTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR GCA 72 bp TATCGCGGCTCCCATATAAAGCATAGAAAACCTGGTTaGTGCAGACAAAACAGACTTCAGGTTGATCCAGAC +
Preference number: 3 (lower is better)
Translates to: YRGSHIKHRKPG*CRQNRLQVDPD
Trigger: GTCTGGATCAACCTGAAGTCTGTTTTGTCTGCAGCAACCAGGTTTTCTATGCTTTATATGGGAGCCGCGATA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR CCA 72 bp GCTAAGTACTCACCATTGCCCACACAATACAAAAGGTaGTCGACTGAAGCTCATTTCAAAACAGAAGCCCAG +
Preference number: 3 (lower is better)
Translates to: AKYSPLPTQYKR*STEAHFKTEAQ
Trigger: CTGGGCTTCTGTTTTGAAATGAGCTTCAGTCGACCACCTTTTGTATTGTGTGGGCAATGGTGAGTACTTAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR TCA 72 bp CCAGGGTTTTGGTTTCTAGGCCACAGTATAAATCAGTaGCATCTCATCTTCACTTTGCTAAGCAGGCACTTC +
Preference number: 3 (lower is better)
Translates to: PGFWFLGHSINQ*HLIFTLLSRHF
Trigger: GAAGTGCCTGCTTAGCAAAGTGAAGATGAGATGTCACTGATTTATACTGTGGCCTAGAAACCAAAACCCTGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR TCA 72 bp ATGTACACCGGGTACCAGGAGACAGTCTTAGCTACCTaGCTTAGAAACAAATCATTCATTCTTCAGAGATGG +
Preference number: 3 (lower is better)
Translates to: MYTGYQETVLAT*LRNKSFILQRW
Trigger: CCATCTCTGAAGAATGAATGATTTGTTTCTAAGTCAGGTAGCTAAGACTGTCTCCTGGTACCCGGTGTACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR TCA 72 bp ATGCCAGTACCATATCTGGTAGCAATGACAACTTACTaGCAGCTCAGAAAGCCACACAAACATCTTACTAAA +
Preference number: 3 (lower is better)
Translates to: MPVPYLVAMTTY*QLRKPHKHLTK
Trigger: TTTAGTAAGATGTTTGTGTGGCTTTCTGAGCTGTCAGTAAGTTGTCATTGCTACCAGATATGGTACTGGCAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR-3UTR CAA 90 bp AAGACTTATCCATTATTGATGGATGCAGTGGCCCACACTTTTAATCCTTTAATTCTCCAGCCCTGCCCCTaGCTTGTAATTTTTAAATCA +
Preference number: 3 (lower is better)
Translates to: KTYPLLMDAVAHTFNPLILQPCP*LVIFKS
Trigger: TGATTTAAAAATTACAAGCAAGGGGCAGGGCTGGAG...AATTAAAGGATTAAAAGTGTGGGCCACTGCATCCATCAATAATGGATAAGTCTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR CCA 90 bp GGTAGTGAGCCACCATGTGGTTGCTGGGAATTGAATTCAAGTCCTCTGGAAGAGTCGGGTCCCCGGCCCTaGGGTTCGCGGAGAGGAGAC +
Preference number: 4 (lower is better)
Translates to: GSEPPCGCWELNSSPLEESGPRP*GSRRGD
Trigger: GTCTCCTCTCCGCGAACCCCAGGGCCGGGGACCCGA...CTCTTCCAGAGGACTTGAATTCAATTCCCAGCAACCACATGGTGGCTCACTACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR CCA 90 bp TTCAGACACACCAGAAGAGGGCCCTGGGACCTATTACAGATGGTAGTGAGCCACCTTCCCTGGCGAGGCTaGGCCAATAGCGGATGGACC +
Preference number: 4 (lower is better)
Translates to: FRHTRRGPWDLLQMVVSHLPWRG*ANSGWT
Trigger: GGTCCATCCGCTATTGGCCCAGCCTCGCCAGGGAAG...GTGGCTCACTACCATCTGTAATAGGTCCCAGGGCCCTCTTCTGGTGTGTCTGAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR GCA 90 bp TTCAGACACACCAGAAGAGGGCCCTGGGACCTATTACAGATGGTAGTGAGCCACCAATCCCTGAGAGCATaGCTTGGCCCTGGGGCAGGA +
Preference number: 4 (lower is better)
Translates to: FRHTRRGPWDLLQMVVSHQSLRA*LGPGAG
Trigger: TCCTGCCCCAGGGCCAAGGCATGCTCTCAGGGATTG...GTGGCTCACTACCATCTGTAATAGGTCCCAGGGCCCTCTTCTGGTGTGTCTGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR GCA 90 bp CTGTCACTGTCTTCAGACACACCAGAAGAGGGCCCTGGGACCTATTACAGATGGTCCCAGGTGCCACGCTaGTGCCAAAATCAGGAGCCC +
Preference number: 4 (lower is better)
Translates to: LSLSSDTPEEGPGTYYRWSQVPR*CQNQEP
Trigger: GGGCTCCTGATTTTGGCAGCAGCGTGGCACCTGGGA...CCATCTGTAATAGGTCCCAGGGCCCTCTTCTGGTGTGTCTGAAGACAGTGACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR CCA 90 bp ATCAGCTTCTCAGAGACTCCCAGAGTGCCACATGCAGAGGGCAATCTGTTTTCCCCTGAGAGCATGCCTTaGCCCTGGGGCAGGACATGC +
Preference number: 4 (lower is better)
Translates to: ISFSETPRVPHAEGNLFSPESMP*PWGRTC
Trigger: GCATGTCCTGCCCCAGGGCCAAGGCATGCTCTCAGG...GGAAAACAGATTGCCCTCTGCATGTGGCACTCTGGGAGTCTCTGAGAAGCTGAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR CAA 72 bp GACAACCAGTTGGGGAGCGAGGCAACCTGTTTTGTTTaGCTGCCTCTTTGGACCGAGGGAGGCTGGAGAAGG +
Preference number: 4 (lower is better)
Translates to: DNQLGSEATCFV*LPLWTEGGWRR
Trigger: CCTTCTCCAGCCTCCCTCGGTCCAAAGAGGCAGCAAAACAAAACAGGTTGCCTCGCTCCCCAACTGGTTGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR TCA 90 bp TTCAGACACACCAGAAGAGGGCCCTGGGACCTATTACAGATGGTAGTGAGCCACCCACGGAGGACAGGATaGAACTTCCTCCCTGCACTG +
Preference number: 4 (lower is better)
Translates to: FRHTRRGPWDLLQMVVSHPRRTG*NFLPAL
Trigger: CAGTGCAGGGAGGAAGTTTCATCCTGTCCTCCGTGG...GTGGCTCACTACCATCTGTAATAGGTCCCAGGGCCCTCTTCTGGTGTGTCTGAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR TCA 90 bp TTCAGACACACCAGAAGAGGGCCCTGGGACCTATTACAGATGGTAGTGAGCCACGCCCCGTCCACCAACTaGGGAGGTCAAAGACTCTTC +
Preference number: 4 (lower is better)
Translates to: FRHTRRGPWDLLQMVVSHAPSTN*GGQRLF
Trigger: GAAGAGTCTTTGACCTCCTCAGTTGGTGGACGGGGC...GTGGCTCACTACCATCTGTAATAGGTCCCAGGGCCCTCTTCTGGTGTGTCTGAA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR GCA 90 bp CCATCCCAGCAGGAGAAGGAAAACTGGAGCTCCTCTGAGAACAGAAGTCCAAAGGGGCTGTCTCCCAGGTaGCACGCTGCTGCCAAAATC +
Preference number: 4 (lower is better)
Translates to: PSQQEKENWSSSENRSPKGLSPR*HAAAKI
Trigger: GATTTTGGCAGCAGCGTGGCACCTGGGAGACAGCCC...CTTTGGACTTCTGTTCTCAGAGGAGCTCCAGTTTTCCTTCTCCTGCTGGGATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR TCA 90 bp TTCAGACACACCAGAAGAGGGCCCTGGGACCTATTACAGATGGTAGTGAGCCACAGGTCCACACTGATCTaGGTCACGGCCTTGTCTAGC +
Preference number: 4 (lower is better)
Translates to: FRHTRRGPWDLLQMVVSHRSTLI*VTALSS
Trigger: GCTAGACAAGGCCGTGACTCAGATCAGTGTGGACCT...GTGGCTCACTACCATCTGTAATAGGTCCCAGGGCCCTCTTCTGGTGTGTCTGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR CCA 90 bp TTCAGACACACCAGAAGAGGGCCCTGGGACCTATTACAGATGGTAGTGAGCCACCGCTGGAGTCGGGCTTaGTTGTCTGTCTGTTCACAC +
Preference number: 4 (lower is better)
Translates to: FRHTRRGPWDLLQMVVSHRWSRA*LSVCSH
Trigger: GTGTGAACAGACAGACAACCAAGCCCGACTCCAGCG...GTGGCTCACTACCATCTGTAATAGGTCCCAGGGCCCTCTTCTGGTGTGTCTGAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR CAA 72 bp TATTGGACAACCAGTTGGGGAGCGAGGCAACCTGTTTaGTTTTGCTGCCTCTTTGGACCGAGGGAGGCTGGA +
Preference number: 4 (lower is better)
Translates to: YWTTSWGARQPV*FCCLFGPREAG
Trigger: TCCAGCCTCCCTCGGTCCAAAGAGGCAGCAAAACAAAACAGGTTGCCTCGCTCCCCAACTGGTTGTCCAATA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR CCA 90 bp GGACCAACCATGACAGCCCGAAACACCATGAATTTGTCTTGCAGACCTCTGGCTTCGCTAGGGGGCAGCTaGAGTTCTTTGCAGACAGAC +
Preference number: 4 (lower is better)
Translates to: GPTMTARNTMNLSCRPLASLGGS*SSLQTD
Trigger: GTCTGTCTGCAAAGAACTCCAGCTGCCCCCTAGCGA...AGCCAGAGGTCTGCAAGACAAATTCATGGTGTTTCGGGCTGTCATGGTTGGTCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR CAA 72 bp AGAGCTCTCAGAGCAACATCTCTGGGTAGACCAGCCTaGGCATTACGATGTTTAGGAAGGGACCGTCTACGG +
Preference number: 4 (lower is better)
Translates to: RALRATSLGRPA*ALRCLGRDRLR
Trigger: CCGTAGACGGTCCCTTCCTAAACATCGTAATGCCAAGGCTGGTCTACCCAGAGATGTTGCTCTGAGAGCTCT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR CAA 72 bp AAACAACAAAACCTTTCCCCCTGTGCTCTGTACAGGTaGCCAGGGCCCTTTCAGGTCCTGACTGACTCACAC +
Preference number: 4 (lower is better)
Translates to: KQQNLSPCALYR*PGPFQVLTDSH
Trigger: GTGTGAGTCAGTCAGGACCTGAAAGGGCCCTGGCAACCTGTACAGAGCACAGGGGGAAAGGTTTTGTTGTTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR TCA 90 bp ATCAGCTTCTCAGAGACTCCCAGAGTGCCACATGCAGAGGGCAATCTGTTTTCCCAGGGTGTAGAAACTTaGTCCTCCTCTGTCCCACAG +
Preference number: 4 (lower is better)
Translates to: ISFSETPRVPHAEGNLFSQGVET*SSSVPQ
Trigger: CTGTGGGACAGAGGAGGATCAAGTTTCTACACCCTG...GGAAAACAGATTGCCCTCTGCATGTGGCACTCTGGGAGTCTCTGAGAAGCTGAT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR GCA 90 bp TTCAGACACACCAGAAGAGGGCCCTGGGACCTATTACAGATGGTAGTGAGCCACATGAAACTTCCTCCCTaGACTGCTGTCAGGAACCTG +
Preference number: 4 (lower is better)
Translates to: FRHTRRGPWDLLQMVVSHMKLPP*TAVRNL
Trigger: CAGGTTCCTGACAGCAGTGCAGGGAGGAAGTTTCAT...GTGGCTCACTACCATCTGTAATAGGTCCCAGGGCCCTCTTCTGGTGTGTCTGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR CCA 90 bp TTCAGACACACCAGAAGAGGGCCCTGGGACCTATTACAGATGGTAGTGAGCCACACTTCCCAGTGCCTGTaGAGCACACAAAGACAGCAT +
Preference number: 4 (lower is better)
Translates to: FRHTRRGPWDLLQMVVSHTSQCL*STQRQH
Trigger: ATGCTGTCTTTGTGTGCTCCACAGGCACTGGGAAGT...GTGGCTCACTACCATCTGTAATAGGTCCCAGGGCCCTCTTCTGGTGTGTCTGAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR CCA 90 bp GGTAGTGAGCCACCATGTGGTTGCTGGGAATTGAATTCAAGTCCTCTGGAAGAGCAGGAGTCAGGCTGTTaGGAACCTCACACTCCCTCT +
Preference number: 4 (lower is better)
Translates to: GSEPPCGCWELNSSPLEEQESGC*EPHTPS
Trigger: AGAGGGAGTGTGAGGTTCCCAACAGCCTGACTCCTG...CTCTTCCAGAGGACTTGAATTCAATTCCCAGCAACCACATGGTGGCTCACTACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR TCA 90 bp CCATCCCAGCAGGAGAAGGAAAACTGGAGCTCCTCTGAGAACAGAAGTCCAAAGGGCAGGACATGCTGGTaGATCTTTCCTGAGCTTTCA +
Preference number: 4 (lower is better)
Translates to: PSQQEKENWSSSENRSPKGRTCW*IFPELS
Trigger: TGAAAGCTCAGGAAAGATTCACCAGCATGTCCTGCC...CTTTGGACTTCTGTTCTCAGAGGAGCTCCAGTTTTCCTTCTCCTGCTGGGATGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR TCA 90 bp ATCAGCTTCTCAGAGACTCCCAGAGTGCCACATGCAGAGGGCAATCTGTTTTCCTGCACATCCCAGCTGTaGACCTGCTTCTCTGAAGAA +
Preference number: 4 (lower is better)
Translates to: ISFSETPRVPHAEGNLFSCTSQL*TCFSEE
Trigger: TTCTTCAGAGAAGCAGGTTCACAGCTGGGATGTGCA...GGAAAACAGATTGCCCTCTGCATGTGGCACTCTGGGAGTCTCTGAGAAGCTGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR TCA 90 bp CTGTCACTGTCTTCAGACACACCAGAAGAGGGCCCTGGGACCTATTACAGATGGTACGGTGACTGCATCTaGCATCTGGTTACCATTGTC +
Preference number: 4 (lower is better)
Translates to: LSLSSDTPEEGPGTYYRWYGDCI*HLVTIV
Trigger: GACAATGGTAACCAGATGTCAGATGCAGTCACCGTA...CCATCTGTAATAGGTCCCAGGGCCCTCTTCTGGTGTGTCTGAAGACAGTGACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR TCA 90 bp CTGTCACTGTCTTCAGACACACCAGAAGAGGGCCCTGGGACCTATTACAGATGGTTTCATGTAACCAGCTaGGATGCTCATGGGCTTGCA +
Preference number: 4 (lower is better)
Translates to: LSLSSDTPEEGPGTYYRWFHVTS*DAHGLA
Trigger: TGCAAGCCCATGAGCATCTCAGCTGGTTACATGAAA...CCATCTGTAATAGGTCCCAGGGCCCTCTTCTGGTGTGTCTGAAGACAGTGACAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR TCA 90 bp AGCAGGAGAAGGAAAACTGGAGCTCCTCTGAGAACAGAAGTCCAAAGGTGTGCTAGTAAGAGTTGGACTTaGGGCTTCCCAGCTGCTCTG +
Preference number: 4 (lower is better)
Translates to: SRRRKTGAPLRTEVQRCASKSWT*GFPAAL
Trigger: CAGAGCAGCTGGGAAGCCTCAAGTCCAACTCTTACT...AGCACACCTTTGGACTTCTGTTCTCAGAGGAGCTCCAGTTTTCCTTCTCCTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR GCA 90 bp TTCAGACACACCAGAAGAGGGCCCTGGGACCTATTACAGATGGTAGTGAGCCACCACCATCAATCGACATaGGATCAGGTCTTCAGACTG +
Preference number: 4 (lower is better)
Translates to: FRHTRRGPWDLLQMVVSHHHQST*DQVFRL
Trigger: CAGTCTGAAGACCTGATCGCATGTCGATTGATGGTG...GTGGCTCACTACCATCTGTAATAGGTCCCAGGGCCCTCTTCTGGTGTGTCTGAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR GCA 90 bp TCAGGTGGAAGAGGAGGAGGAAATACCTTACAGCTGAAAAAGAGCATCAGGGCCAGGACTTGTTCCTCATaGTCCAGGAGGCACTCACAG +
Preference number: 4 (lower is better)
Translates to: SGGRGGGNTLQLKKSIRARTCSS*SRRHSQ
Trigger: CTGTGAGTGCCTCCTGGAGCATGAGGAACAAGTCCT...GGCCCTGATGCTCTTTTTCAGCTGTAAGGTATTTCCTCCTCCTCTTCCACCTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR CCA 90 bp CAGAAGCCCAGCTTCCAGGTCCACCAGTTACTTGTGTTTATTTTGGATATGAGCTCTGGCAGGGTCTCCTaGTGTAGCAGGAAGCGCTCT +
Preference number: 4 (lower is better)
Translates to: QKPSFQVHQLLVFILDMSSGRVS*CSRKRS
Trigger: AGAGCGCTTCCTGCTACACCAGGAGACCCTGCCAGA...GCTCATATCCAAAATAAACACAAGTAACTGGTGGACCTGGAAGCTGGGCTTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR CAA 72 bp ACCAACCATGACAGCCCGAAACACCATGAATTTGTCTaGCAGACCTCTGGCTCTCCCCATAGCATCCAGTCA +
Preference number: 4 (lower is better)
Translates to: TNHDSPKHHEFV*QTSGSPHSIQS
Trigger: TGACTGGATGCTATGGGGAGAGCCAGAGGTCTGCAAGACAAATTCATGGTGTTTCGGGCTGTCATGGTTGGT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR TCA 90 bp CTGTCACTGTCTTCAGACACACCAGAAGAGGGCCCTGGGACCTATTACAGATGGCTGGTGAATCTTTCCTaGGCTTTCAGGAATCAATCG +
Preference number: 4 (lower is better)
Translates to: LSLSSDTPEEGPGTYYRWLVNLS*AFRNQS
Trigger: CGATTGATTCCTGAAAGCTCAGGAAAGATTCACCAG...CCATCTGTAATAGGTCCCAGGGCCCTCTTCTGGTGTGTCTGAAGACAGTGACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR TCA 90 bp AGCAGGAGAAGGAAAACTGGAGCTCCTCTGAGAACAGAAGTCCAAAGGTGTGCTCCAGTTCCCATTTGCTaGTGTTTGAACTCGTCAGGG +
Preference number: 4 (lower is better)
Translates to: SRRRKTGAPLRTEVQRCAPVPIC*CLNSSG
Trigger: CCCTGACGAGTTCAAACATCAGCAAATGGGAACTGG...AGCACACCTTTGGACTTCTGTTCTCAGAGGAGCTCCAGTTTTCCTTCTCCTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR TCA 90 bp CTGTCACTGTCTTCAGACACACCAGAAGAGGGCCCTGGGACCTATTACAGATGGGAATCCAAATCCGTGTaGGAGGAAAACAGCTCATCA +
Preference number: 4 (lower is better)
Translates to: LSLSSDTPEEGPGTYYRWESKSV*EENSSS
Trigger: TGATGAGCTGTTTTCCTCTCACACGGATTTGGATTC...CCATCTGTAATAGGTCCCAGGGCCCTCTTCTGGTGTGTCTGAAGACAGTGACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR TCA 90 bp GCTAAGTACTCACCATTGCCCACACAATACAAAAGGTGGTCGACTGAAGCTCATACCTCTGCCCACTCCTaGGAGACCAACGCAACTTCA +
Preference number: 4 (lower is better)
Translates to: AKYSPLPTQYKRWSTEAHTSAHS*ETNATS
Trigger: TGAAGTTGCGTTGGTCTCTCAGGAGTGGGCAGAGGT...ATGAGCTTCAGTCGACCACCTTTTGTATTGTGTGGGCAATGGTGAGTACTTAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR GCA 90 bp AGCAGGAGAAGGAAAACTGGAGCTCCTCTGAGAACAGAAGTCCAAAGGTGTGCTGTCACAATACTTCTCTaGCAGAGAAGCTGCCCATGG +
Preference number: 4 (lower is better)
Translates to: SRRRKTGAPLRTEVQRCAVTILL*QRSCPW
Trigger: CCATGGGCAGCTTCTCTGGCAGAGAAGTATTGTGAC...AGCACACCTTTGGACTTCTGTTCTCAGAGGAGCTCCAGTTTTCCTTCTCCTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR GCA 90 bp TTCAGACACACCAGAAGAGGGCCCTGGGACCTATTACAGATGGTAGTGAGCCACGCTTCAATCTTCTCTTaGAGCCTGTCCTCTGAAATG +
Preference number: 4 (lower is better)
Translates to: FRHTRRGPWDLLQMVVSHASIFS*SLSSEM
Trigger: CATTTCAGAGGACAGGCTGCAAGAGAAGATTGAAGC...GTGGCTCACTACCATCTGTAATAGGTCCCAGGGCCCTCTTCTGGTGTGTCTGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR GCA 90 bp GGTAGTGAGCCACCATGTGGTTGCTGGGAATTGAATTCAAGTCCTCTGGAAGAGGACCAGTCATCTCTCTaGAGTGCTCTGCACAGAATC +
Preference number: 4 (lower is better)
Translates to: GSEPPCGCWELNSSPLEEDQSSL*SALHRI
Trigger: GATTCTGTGCAGAGCACTGCAGAGAGATGACTGGTC...CTCTTCCAGAGGACTTGAATTCAATTCCCAGCAACCACATGGTGGCTCACTACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR CCA 90 bp GGTAGTGAGCCACCATGTGGTTGCTGGGAATTGAATTCAAGTCCTCTGGAAGAGCAGATAGTGTCCACCTaGGACACCTCTCGAAAGAAG +
Preference number: 4 (lower is better)
Translates to: GSEPPCGCWELNSSPLEEQIVST*DTSRKK
Trigger: CTTCTTTCGAGAGGTGTCCCAGGTGGACACTATCTG...CTCTTCCAGAGGACTTGAATTCAATTCCCAGCAACCACATGGTGGCTCACTACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR CAA 72 bp CATCTCATCTTCACTTTGCTAAGCAGGCACTTCCCTTaGCCTCCGACCAAGAGATCAGCTTCTCAGAGACTC +
Preference number: 4 (lower is better)
Translates to: HLIFTLLSRHFP*PPTKRSASQRL
Trigger: GAGTCTCTGAGAAGCTGATCTCTTGGTCGGAGGCAAAGGGAAGTGCCTGCTTAGCAAAGTGAAGATGAGATG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR TCA 90 bp TCAGGTGGAAGAGGAGGAGGAAATACCTTACAGCTGAAAAAGAGCATCAGGGCCGTAGTTCACAGACTCTaGTATGGAATGGTGGGGGAA +
Preference number: 4 (lower is better)
Translates to: SGGRGGGNTLQLKKSIRAVVHRL*YGMVGE
Trigger: TTCCCCCACCATTCCATATCAGAGTCTGTGAACTAC...GGCCCTGATGCTCTTTTTCAGCTGTAAGGTATTTCCTCCTCCTCTTCCACCTGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR TCA 90 bp GGTAGTGAGCCACCATGTGGTTGCTGGGAATTGAATTCAAGTCCTCTGGAAGAGCAGCAATCTTCCAAATaGGGAGCTTCTCCGTGCATA +
Preference number: 4 (lower is better)
Translates to: GSEPPCGCWELNSSPLEEQQSSK*GASPCI
Trigger: TATGCACGGAGAAGCTCCTCATTTGGAAGATTGCTG...CTCTTCCAGAGGACTTGAATTCAATTCCCAGCAACCACATGGTGGCTCACTACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR TCA 90 bp GGTAGTGAGCCACCATGTGGTTGCTGGGAATTGAATTCAAGTCCTCTGGAAGAGCATTTTCCCTTGGAGTaGCAGACACCAGACCACTAT +
Preference number: 4 (lower is better)
Translates to: GSEPPCGCWELNSSPLEEHFPLE*QTPDHY
Trigger: ATAGTGGTCTGGTGTCTGTCACTCCAAGGGAAAATG...CTCTTCCAGAGGACTTGAATTCAATTCCCAGCAACCACATGGTGGCTCACTACC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR GCA 90 bp GCTAAGTACTCACCATTGCCCACACAATACAAAAGGTGGTCGACTGAAGCTCATAAACCATACTCTCACTaGCCCGTCCACCAACTGAGG +
Preference number: 4 (lower is better)
Translates to: AKYSPLPTQYKRWSTEAHKPYSH*PVHQLR
Trigger: CCTCAGTTGGTGGACGGGGCAGTGAGAGTATGGTTT...ATGAGCTTCAGTCGACCACCTTTTGTATTGTGTGGGCAATGGTGAGTACTTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR GCA 90 bp AGCAGGAGAAGGAAAACTGGAGCTCCTCTGAGAACAGAAGTCCAAAGGTGTGCTTTGTCCTCCAGCTGGTaGAAAATGATCAGTGAGGTG +
Preference number: 4 (lower is better)
Translates to: SRRRKTGAPLRTEVQRCALSSSW*KMISEV
Trigger: CACCTCACTGATCATTTTGCACCAGCTGGAGGACAA...AGCACACCTTTGGACTTCTGTTCTCAGAGGAGCTCCAGTTTTCCTTCTCCTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR CCA 90 bp CTGTCACTGTCTTCAGACACACCAGAAGAGGGCCCTGGGACCTATTACAGATGGAAGTACTCGCTGAGCTaGATGCCGTCTTTTATAAGT +
Preference number: 4 (lower is better)
Translates to: LSLSSDTPEEGPGTYYRWKYSLS*MPSFIS
Trigger: ACTTATAAAAGACGGCATCCAGCTCAGCGAGTACTT...CCATCTGTAATAGGTCCCAGGGCCCTCTTCTGGTGTGTCTGAAGACAGTGACAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR TCA 90 bp GCTAAGTACTCACCATTGCCCACACAATACAAAAGGTGGTCGACTGAAGCTCATGTGAACCTGCTTCTCTaGAGAATCGTCCAGTTCCCA +
Preference number: 4 (lower is better)
Translates to: AKYSPLPTQYKRWSTEAHVNLLL*RIVQFP
Trigger: TGGGAACTGGACGATTCTTCAGAGAAGCAGGTTCAC...ATGAGCTTCAGTCGACCACCTTTTGTATTGTGTGGGCAATGGTGAGTACTTAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR TCA 90 bp GCTAAGTACTCACCATTGCCCACACAATACAAAAGGTGGTCGACTGAAGCTCATGAGTCACTTCTACGGTaGCTGCATCTGACATCTGGT +
Preference number: 4 (lower is better)
Translates to: AKYSPLPTQYKRWSTEAHESLLR*LHLTSG
Trigger: ACCAGATGTCAGATGCAGTCACCGTAGAAGTGACTC...ATGAGCTTCAGTCGACCACCTTTTGTATTGTGTGGGCAATGGTGAGTACTTAGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR TCA 90 bp AGCAGGAGAAGGAAAACTGGAGCTCCTCTGAGAACAGAAGTCCAAAGGTGTGCTATCATCTTTGCCATCTaGACCAGACCAGTCATCTCT +
Preference number: 4 (lower is better)
Translates to: SRRRKTGAPLRTEVQRCAIIFAI*TRPVIS
Trigger: AGAGATGACTGGTCTGGTTCAGATGGCAAAGATGAT...AGCACACCTTTGGACTTCTGTTCTCAGAGGAGCTCCAGTTTTCCTTCTCCTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR GCA 90 bp CAGAAGCCCAGCTTCCAGGTCCACCAGTTACTTGTGTTTATTTTGGATATGAGCCTCTCTGCAGTGCTCTaGACAGAATCTCCAGCTTCA +
Preference number: 4 (lower is better)
Translates to: QKPSFQVHQLLVFILDMSLSAVL*TESPAS
Trigger: TGAAGCTGGAGATTCTGTGCAGAGCACTGCAGAGAG...GCTCATATCCAAAATAAACACAAGTAACTGGTGGACCTGGAAGCTGGGCTTCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR CCA 90 bp TCAGGTGGAAGAGGAGGAGGAAATACCTTACAGCTGAAAAAGAGCATCAGGGCCACTGCATCTGACATCTaGTTACCATTGTCTTCCACC +
Preference number: 4 (lower is better)
Translates to: SGGRGGGNTLQLKKSIRATASDI*LPLSST
Trigger: GGTGGAAGACAATGGTAACCAGATGTCAGATGCAGT...GGCCCTGATGCTCTTTTTCAGCTGTAAGGTATTTCCTCCTCCTCTTCCACCTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR CCA 90 bp TCAGGTGGAAGAGGAGGAGGAAATACCTTACAGCTGAAAAAGAGCATCAGGGCCATCTTGTCCTCCAGCTaGTGCAAAATGATCAGTGAG +
Preference number: 4 (lower is better)
Translates to: SGGRGGGNTLQLKKSIRAILSSS*CKMISE
Trigger: CTCACTGATCATTTTGCACCAGCTGGAGGACAAGAT...GGCCCTGATGCTCTTTTTCAGCTGTAAGGTATTTCCTCCTCCTCTTCCACCTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR CCA 90 bp AGCAGGAGAAGGAAAACTGGAGCTCCTCTGAGAACAGAAGTCCAAAGGTGTGCTCTGCTGTATCGTTCTTaGTCACTGGATTTCTCTAGC +
Preference number: 4 (lower is better)
Translates to: SRRRKTGAPLRTEVQRCALLYRS*SLDFSS
Trigger: GCTAGAGAAATCCAGTGACCAAGAACGATACAGCAG...AGCACACCTTTGGACTTCTGTTCTCAGAGGAGCTCCAGTTTTCCTTCTCCTGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR GCA 90 bp AAGACTTATCCATTATTGATGGATGCAGTGGCCCACACTTTTAATCCTTTAATTCTCTCGGTCAGCAGCTaGTCTGGCAGGGTCTCCTGG +
Preference number: 4 (lower is better)
Translates to: KTYPLLMDAVAHTFNPLILSVSS*SGRVSW
Trigger: CCAGGAGACCCTGCCAGAGCAGCTGCTGACCGAGAG...AATTAAAGGATTAAAAGTGTGGGCCACTGCATCCATCAATAATGGATAAGTCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR GCA 90 bp GCTAAGTACTCACCATTGCCCACACAATACAAAAGGTGGTCGACTGAAGCTCATGGTCAACACAGGCATTaGACTAAGACTCAGCTGTCT +
Preference number: 4 (lower is better)
Translates to: AKYSPLPTQYKRWSTEAHGQHRH*TKTQLS
Trigger: AGACAGCTGAGTCTTAGTGCAATGCCTGTGTTGACC...ATGAGCTTCAGTCGACCACCTTTTGTATTGTGTGGGCAATGGTGAGTACTTAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR CCA 90 bp TTCAGACACACCAGAAGAGGGCCCTGGGACCTATTACAGATGGTAGTGAGCCACAAATCTGAAAAATTCTaGTCAGCAAACTGGGTCATG +
Preference number: 4 (lower is better)
Translates to: FRHTRRGPWDLLQMVVSHKSEKF*SANWVM
Trigger: CATGACCCAGTTTGCTGACCAGAATTTTTCAGATTT...GTGGCTCACTACCATCTGTAATAGGTCCCAGGGCCCTCTTCTGGTGTGTCTGAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
3UTR CAA 72 bp CCCAGCTTCCAGGTCCACCAGTTACTTGTGTTTATTTaGGATATGAGCTCAATGTCAGGCTTCACACGCCTT +
Preference number: 4 (lower is better)
Translates to: PSFQVHQLLVFI*DMSSMSGFTRL
Trigger: AAGGCGTGTGAAGCCTGACATTGAGCTCATATCCAAAATAAACACAAGTAACTGGTGGACCTGGAAGCTGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR GCA 90 bp CAGAAGCCCAGCTTCCAGGTCCACCAGTTACTTGTGTTTATTTTGGATATGAGCATGACAGAAACAGCCTaGACAGAATGGACTTCACCT +
Preference number: 4 (lower is better)
Translates to: QKPSFQVHQLLVFILDMSMTETA*TEWTSP
Trigger: AGGTGAAGTCCATTCTGTGCAGGCTGTTTCTGTCAT...GCTCATATCCAAAATAAACACAAGTAACTGGTGGACCTGGAAGCTGGGCTTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR GCA 90 bp GCTAAGTACTCACCATTGCCCACACAATACAAAAGGTGGTCGACTGAAGCTCATCGATTGGATCATCTTTaGCATCTGAACCAGACCAGT +
Preference number: 4 (lower is better)
Translates to: AKYSPLPTQYKRWSTEAHRLDHL*HLNQTS
Trigger: ACTGGTCTGGTTCAGATGGCAAAGATGATCCAATCG...ATGAGCTTCAGTCGACCACCTTTTGTATTGTGTGGGCAATGGTGAGTACTTAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR TCA 90 bp CAGAAGCCCAGCTTCCAGGTCCACCAGTTACTTGTGTTTATTTTGGATATGAGCGTCTGTTCACACATCTaGACCAGGATATCAAAGTCA +
Preference number: 4 (lower is better)
Translates to: QKPSFQVHQLLVFILDMSVCSHI*TRISKS
Trigger: TGACTTTGATATCCTGGTTCAGATGTGTGAACAGAC...GCTCATATCCAAAATAAACACAAGTAACTGGTGGACCTGGAAGCTGGGCTTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR GCA 90 bp AAGACTTATCCATTATTGATGGATGCAGTGGCCCACACTTTTAATCCTTTAATTCTGCTGTCAGGAACCTaGACATCTTCTCGCCTCCCA +
Preference number: 4 (lower is better)
Translates to: KTYPLLMDAVAHTFNPLILLSGT*TSSRLP
Trigger: TGGGAGGCGAGAAGATGTGCAGGTTCCTGACAGCAG...AATTAAAGGATTAAAAGTGTGGGCCACTGCATCCATCAATAATGGATAAGTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR TCA 90 bp AACATCTTACTAAAACACTTTAAGACTTATCCATTATTGATGGATGCAGTGGCCTCCACCAAGAGGCAGTaGGCTTTCATCTTGTCCTCC +
Preference number: 4 (lower is better)
Translates to: NILLKHFKTYPLLMDAVASTKRQ*AFILSS
Trigger: GGAGGACAAGATGAAAGCTCACTGCCTCTTGGTGGA...GGCCACTGCATCCATCAATAATGGATAAGTCTTAAAGTGTTTTAGTAAGATGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR CCA 90 bp AAGACTTATCCATTATTGATGGATGCAGTGGCCCACACTTTTAATCCTTTAATTCAGACTGATGAGTTGTaGTGCGGTCAACACAGGCAT +
Preference number: 4 (lower is better)
Translates to: KTYPLLMDAVAHTFNPLIQTDEL*CGQHRH
Trigger: ATGCCTGTGTTGACCGCACCACAACTCATCAGTCTG...AATTAAAGGATTAAAAGTGTGGGCCACTGCATCCATCAATAATGGATAAGTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR CCA 90 bp AACATCTTACTAAAACACTTTAAGACTTATCCATTATTGATGGATGCAGTGGCCGGATACATTTTCCCTTaGAGTGACAGACACCAGACC +
Preference number: 4 (lower is better)
Translates to: NILLKHFKTYPLLMDAVAGYIFP*SDRHQT
Trigger: GGTCTGGTGTCTGTCACTCCAAGGGAAAATGTATCC...GGCCACTGCATCCATCAATAATGGATAAGTCTTAAAGTGTTTTAGTAAGATGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR CCA 90 bp AACATCTTACTAAAACACTTTAAGACTTATCCATTATTGATGGATGCAGTGGCCGCTCTTGCTCAGCCATaGCTTCAATCTTCTCTTGCA +
Preference number: 4 (lower is better)
Translates to: NILLKHFKTYPLLMDAVAALAQP*LQSSLA
Trigger: TGCAAGAGAAGATTGAAGCCATGGCTGAGCAAGAGC...GGCCACTGCATCCATCAATAATGGATAAGTCTTAAAGTGTTTTAGTAAGATGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR GCA 90 bp AAGACTTATCCATTATTGATGGATGCAGTGGCCCACACTTTTAATCCTTTAATTGGCCCAAATCTTTCCTaGAGTACTGTAGAAATGCAG +
Preference number: 4 (lower is better)
Translates to: KTYPLLMDAVAHTFNPLIGPNLS*STVEMQ
Trigger: CTGCATTTCTACAGTACTGCAGGAAAGATTTGGGCC...AATTAAAGGATTAAAAGTGTGGGCCACTGCATCCATCAATAATGGATAAGTCTT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR TCA 90 bp AACATCTTACTAAAACACTTTAAGACTTATCCATTATTGATGGATGCAGTGGCCATAGGTCATCTGGCTTaGAAAGTTTGGCACCATCAA +
Preference number: 4 (lower is better)
Translates to: NILLKHFKTYPLLMDAVAIGHLA*KVWHHQ
Trigger: TTGATGGTGCCAAACTTTTCAAGCCAGATGACCTAT...GGCCACTGCATCCATCAATAATGGATAAGTCTTAAAGTGTTTTAGTAAGATGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR TCA 90 bp AAGACTTATCCATTATTGATGGATGCAGTGGCCCACACTTTTAATCCTTTAATTAGTCCAAGGCTTTCTTaGAATCATACTCATTGGCTC +
Preference number: 4 (lower is better)
Translates to: KTYPLLMDAVAHTFNPLISPRLS*NHTHWL
Trigger: GAGCCAATGAGTATGATTTCAAGAAAGCCTTGGACT...AATTAAAGGATTAAAAGTGTGGGCCACTGCATCCATCAATAATGGATAAGTCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR TCA 90 bp AACATCTTACTAAAACACTTTAAGACTTATCCATTATTGATGGATGCAGTGGCCTTCAAGTCCAAGTACTaGATGTTGACCCCTTCTTTA +
Preference number: 4 (lower is better)
Translates to: NILLKHFKTYPLLMDAVAFKSKY*MLTPSL
Trigger: TAAAGAAGGGGTCAACATTCAGTACTTGGACTTGAA...GGCCACTGCATCCATCAATAATGGATAAGTCTTAAAGTGTTTTAGTAAGATGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS CCA 90 bp CAGGATGATCCCGTGCTGGCGCATGACTGCTGTGCGGATACCGGATaGACCACTTGTGGCTGTCCATGGCACATACTCTGGCTCCTTCCC +
Preference number: 5 (lower is better)
Translates to: QDDPVLAHDCCADTG*TTCGCPWHILWLLP
Trigger: GGGAAGGAGCCAGAGTATGTGCCATGGACAGCCACAAGTGGTCCATCCGGTATCCGCACAGCAGTCATGCGCCAGCACGGGATCATCCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS CCA 90 bp AGCTTCTCCGTGCATACCAGGCAGGCCCACCCACCTTCATCGACATaGACAGAAAGCTGCTCGTCAGCCTCAGCCATTGTCAGGGCTTCC +
Preference number: 5 (lower is better)
Translates to: SFSVHTRQAHPPSST*TESCSSASAIVRAS
Trigger: GGAAGCCCTGACAATGGCTGAGGCTGACGAGCAGCTTTCTGTCCATGTCGATGAAGGTGGGTGGGCCTGCCTGGTATGCACGGAGAAGCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS TCA 90 bp CAGGAACCTGCACATCTTCTCGCCTCCCAAATCCACACAGGTGTCTaGGTAGGTGTCTTCCCTGGCGAGGCTGGGCCAATAGCGGATGGA +
Preference number: 5 (lower is better)
Translates to: QEPAHLLASQIHTGV*VGVFPGEAGPIADG
Trigger: TCCATCCGCTATTGGCCCAGCCTCGCCAGGGAAGACACCTACTCAGACACCTGTGTGGATTTGGGAGGCGAGAAGATGTGCAGGTTCCTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS GCA 90 bp CTGAGGGTATACCATCTTCAGGATGATCCCGTGCTGGCGCATGACTaGTGTGCGGATACCGGATGGACCACTTGTGGCTGTCCATGGCAC +
Preference number: 5 (lower is better)
Translates to: LRVYHLQDDPVLAHD*CADTGWTTCGCPWH
Trigger: GTGCCATGGACAGCCACAAGTGGTCCATCCGGTATCCGCACAGCAGTCATGCGCCAGCACGGGATCATCCTGAAGATGGTATACCCTCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS TCA 90 bp CCCAGCGTGGGTCTGAGGCCGGGTAGTCATCAATCAGGTCCACACTaGTCTGAGTCACGGCCTTGTCTAGCTCAGGGTCCGAATCCAAAT +
Preference number: 5 (lower is better)
Translates to: PSVGLRPGSHQSGPH*SESRPCLAQGPNPN
Trigger: ATTTGGATTCGGACCCTGAGCTAGACAAGGCCGTGACTCAGATCAGTGTGGACCTGATTGATGACTACCCGGCCTCAGACCCACGCTGGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS GCA 90 bp AGCAGCTGCTCTGGCAGGGTCTCCTGGTGTAGCAGGAAGCGCTCTTaGTCAGCCATGGCTTCAATCTTCTCTTGCAGCCTGTCCTCTGAA +
Preference number: 5 (lower is better)
Translates to: SSCSGRVSWCSRKRS*SAMASIFSCSLSSE
Trigger: TTCAGAGGACAGGCTGCAAGAGAAGATTGAAGCCATGGCTGAGCAAGAGCGCTTCCTGCTACACCAGGAGACCCTGCCAGAGCAGCTGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS GCA 90 bp AACACAGGCATTGCACTAAGACTCAGCTGTCTCTCGGTCAGCAGCTaGTCTGGCAGGGTCTCCTGGTGTAGCAGGAAGCGCTCTTGCTCA +
Preference number: 5 (lower is better)
Translates to: NTGIALRLSCLSVSS*SGRVSWCSRKRSCS
Trigger: TGAGCAAGAGCGCTTCCTGCTACACCAGGAGACCCTGCCAGAGCAGCTGCTGACCGAGAGACAGCTGAGTCTTAGTGCAATGCCTGTGTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS CCA 90 bp AGGGCCACCAAATCAGCGCTCCCGTGGAAATCGCTAGGGGGCAGCTaGAGTTCTTTGCAGACAGACAACTTAGTGACAGGCGACACAGCA +
Preference number: 5 (lower is better)
Translates to: RATKSALPWKSLGGS*SSLQTDNLVTGDTA
Trigger: TGCTGTGTCGCCTGTCACTAAGTTGTCTGTCTGCAAAGAACTCCAGCTGCCCCCTAGCGATTTCCACGGGAGCGCTGATTTGGTGGCCCT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR CAA 90 bp TTCAGACACACCAGAAGAGGGCCCTGGGACCTATTACAGATGGTAGTGAGCCACATGATCAGTGAGGTGTaGCTCAGCCCAGGGGCCTCC +
Preference number: 5 (lower is better)
Translates to: FRHTRRGPWDLLQMVVSHMISEV*LSPGAS
Trigger: GGAGGCCCCTGGGCTGAGCAACACCTCACTGATCAT...GTGGCTCACTACCATCTGTAATAGGTCCCAGGGCCCTCTTCTGGTGTGTCTGAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS TCA 90 bp GGTAGCAACCATGACAGAAACAGCCTGCACAGAATGGACTTCACCTaGGGTCGCAGCATAAGACAGGGCCACCAAATCAGCGCTCCCGTG +
Preference number: 5 (lower is better)
Translates to: GSNHDRNSLHRMDFT*GRSIRQGHQISAPV
Trigger: CACGGGAGCGCTGATTTGGTGGCCCTGTCTTATGCTGCGACCTCAGGTGAAGTCCATTCTGTGCAGGCTGTTTCTGTCATGGTTGCTACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS TCA 90 bp TCCTTGAGGACAGTATTGACGTCGATCGCCACCTCTGCCCACTCCTaGGAGACCAACGCAACTTCACGCAGGACTTGTTCCTCATGCTCC +
Preference number: 5 (lower is better)
Translates to: SLRTVLTSIATSAHS*ETNATSRRTCSSCS
Trigger: GGAGCATGAGGAACAAGTCCTGCGTGAAGTTGCGTTGGTCTCTCAGGAGTGGGCAGAGGTGGCGATCGACGTCAATACTGTCCTCAAGGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS CCA 90 bp CTGGCAGGGTCTCCTGGTGTAGCAGGAAGCGCTCTTGCTCAGCCATaGCTTCAATCTTCTCTTGCAGCCTGTCCTCTGAAATGTCTGAAG +
Preference number: 5 (lower is better)
Translates to: LAGSPGVAGSALAQP*LQSSLAACPLKCLK
Trigger: CTTCAGACATTTCAGAGGACAGGCTGCAAGAGAAGATTGAAGCCATGGCTGAGCAAGAGCGCTTCCTGCTACACCAGGAGACCCTGCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS TCA 90 bp GCATCGGTGATGCTCTCCTTCAGGGTCCTGTGCACATCCCAGCTGTaGACCTGCTTCTCTGAAGAATCGTCCAGTTCCCATTTGCTGATG +
Preference number: 5 (lower is better)
Translates to: ASVMLSFRVLCTSQL*TCFSEESSSSHLLM
Trigger: CATCAGCAAATGGGAACTGGACGATTCTTCAGAGAAGCAGGTTCACAGCTGGGATGTGCACAGGACCCTGAAGGAGAGCATCACCGATGC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR CAA 90 bp CTGTCACTGTCTTCAGACACACCAGAAGAGGGCCCTGGGACCTATTACAGATGGCGGATGGACCCCTCTTaGGTAGCAACCATGACAGAA +
Preference number: 5 (lower is better)
Translates to: LSLSSDTPEEGPGTYYRWRMDPS*VATMTE
Trigger: TTCTGTCATGGTTGCTACCAAAGAGGGGTCCATCCG...CCATCTGTAATAGGTCCCAGGGCCCTCTTCTGGTGTGTCTGAAGACAGTGACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS TCA 90 bp TTTCAGGAATCAATCGAACCAACTGGCTCCCCACGGAGGACAGGATaGAACTTCCTCCCTGCACTGCTGTCAGGAACCTGCACATCTTCT +
Preference number: 5 (lower is better)
Translates to: FQESIEPTGSPRRTG*NFLPALLSGTCTSS
Trigger: AGAAGATGTGCAGGTTCCTGACAGCAGTGCAGGGAGGAAGTTTCATCCTGTCCTCCGTGGGGAGCCAGTTGGTTCGATTGATTCCTGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS TCA 90 bp CGTAGCTGTCCAGGAAGCAGTCAATTAGTGCCACAAGCTGCTCCATaGCAACGTTCCGAAGTTTGCTGTCAGCCTGAGGGTATACCATCT +
Preference number: 5 (lower is better)
Translates to: RSCPGSSQLVPQAAP*QRSEVCCQPEGIPS
Trigger: AGATGGTATACCCTCAGGCTGACAGCAAACTTCGGAACGTTGTCATGGAGCAGCTTGTGGCACTAATTGACTGCTTCCTGGACAGCTACG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR CAA 90 bp TCAGGTGGAAGAGGAGGAGGAAATACCTTACAGCTGAAAAAGAGCATCAGGGCCAACTTCACGCAGGACTaGTTCCTCATGCTCCAGGAG +
Preference number: 5 (lower is better)
Translates to: SGGRGGGNTLQLKKSIRANFTQD*FLMLQE
Trigger: CTCCTGGAGCATGAGGAACAAGTCCTGCGTGAAGTT...GGCCCTGATGCTCTTTTTCAGCTGTAAGGTATTTCCTCCTCCTCTTCCACCTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR CAA 90 bp CTGTCACTGTCTTCAGACACACCAGAAGAGGGCCCTGGGACCTATTACAGATGGGATAGGTCATCTGGCTaGAAAAGTTTGGCACCATCA +
Preference number: 5 (lower is better)
Translates to: LSLSSDTPEEGPGTYYRWDRSSG*KSLAPS
Trigger: TGATGGTGCCAAACTTTTCAAGCCAGATGACCTATC...CCATCTGTAATAGGTCCCAGGGCCCTCTTCTGGTGTGTCTGAAGACAGTGACAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR CAA 90 bp GGACCAACCATGACAGCCCGAAACACCATGAATTTGTCTTGCAGACCTCTGGCTTCGATTGGATCATCTTaGCCATCTGAACCAGACCAG +
Preference number: 5 (lower is better)
Translates to: GPTMTARNTMNLSCRPLASIGSS*PSEPDQ
Trigger: CTGGTCTGGTTCAGATGGCAAAGATGATCCAATCGA...AGCCAGAGGTCTGCAAGACAAATTCATGGTGTTTCGGGCTGTCATGGTTGGTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS GCA 90 bp TGTAGCAGGAAGCGCTCTTGCTCAGCCATGGCTTCAATCTTCTCTTaGAGCCTGTCCTCTGAAATGTCTGAAGCTAAAGCTGCCAGTTTA +
Preference number: 5 (lower is better)
Translates to: CSRKRSCSAMASIFS*SLSSEMSEAKAASL
Trigger: TAAACTGGCAGCTTTAGCTTCAGACATTTCAGAGGACAGGCTGCAAGAGAAGATTGAAGCCATGGCTGAGCAAGAGCGCTTCCTGCTACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR CAA 90 bp GGTAGTGAGCCACCATGTGGTTGCTGGGAATTGAATTCAAGTCCTCTGGAAGAGTCTAAACAAGCCGACTaGGTGAAGGAAGTCCACCAA +
Preference number: 5 (lower is better)
Translates to: GSEPPCGCWELNSSPLEESKQAD*VKEVHQ
Trigger: TTGGTGGACTTCCTTCACCAAGTCGGCTTGTTTAGA...CTCTTCCAGAGGACTTGAATTCAATTCCCAGCAACCACATGGTGGCTCACTACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR CAA 90 bp GCTAAGTACTCACCATTGCCCACACAATACAAAAGGTGGTCGACTGAAGCTCATTGGAGTCGGGCTTGGTaGTCTGTCTGTTCACACATC +
Preference number: 5 (lower is better)
Translates to: AKYSPLPTQYKRWSTEAHWSRAW*SVCSHI
Trigger: GATGTGTGAACAGACAGACAACCAAGCCCGACTCCA...ATGAGCTTCAGTCGACCACCTTTTGTATTGTGTGGGCAATGGTGAGTACTTAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS TCA 90 bp AGCTGTGAACCTGCTTCTCTGAAGAATCGTCCAGTTCCCATTTGCTaGTGTTTGAACTCGTCAGGGTGTAGAAACTTGATCCTCCTCTGT +
Preference number: 5 (lower is better)
Translates to: SCEPASLKNRPVPIC*CLNSSGCRNLILLC
Trigger: ACAGAGGAGGATCAAGTTTCTACACCCTGACGAGTTCAAACATCAGCAAATGGGAACTGGACGATTCTTCAGAGAAGCAGGTTCACAGCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS CCA 90 bp ATTGGCTCTTCTGTTTTCGTCACAGATATACAGACTGATGAGTTGTaGTGCGGTCAACACAGGCATTGCACTAAGACTCAGCTGTCTCTC +
Preference number: 5 (lower is better)
Translates to: IGSSVFVTDIQTDEL*CGQHRHCTKTQLSL
Trigger: GAGAGACAGCTGAGTCTTAGTGCAATGCCTGTGTTGACCGCACCACAACTCATCAGTCTGTATATCTGTGACGAAAACAGAAGAGCCAAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR CAA 90 bp ATCAGCTTCTCAGAGACTCCCAGAGTGCCACATGCAGAGGGCAATCTGTTTTCCAAGTCCAAGGCTTTCTaGAAATCATACTCATTGGCT +
Preference number: 5 (lower is better)
Translates to: ISFSETPRVPHAEGNLFSKSKAF*KSYSLA
Trigger: AGCCAATGAGTATGATTTCAAGAAAGCCTTGGACTT...GGAAAACAGATTGCCCTCTGCATGTGGCACTCTGGGAGTCTCTGAGAAGCTGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS TCA 90 bp AAACACACTGTCTTTAGACACTTCGATTGGATCATCTTTGCCATCTaGACCAGACCAGTCATCTCTCTGCAGTGCTCTGCACAGAATCTC +
Preference number: 5 (lower is better)
Translates to: KHTVFRHFDWIIFAI*TRPVISLQCSAQNL
Trigger: GAGATTCTGTGCAGAGCACTGCAGAGAGATGACTGGTCTGGTTCAGATGGCAAAGATGATCCAATCGAAGTGTCTAAAGACAGTGTGTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR CAA 90 bp TCAGGTGGAAGAGGAGGAGGAAATACCTTACAGCTGAAAAAGAGCATCAGGGCCTTAAGCAGTTTTGTCTaGTCTTCATGGGCTACAGTT +
Preference number: 5 (lower is better)
Translates to: SGGRGGGNTLQLKKSIRALSSFV*SSWATV
Trigger: AACTGTAGCCCATGAAGACAAGACAAAACTGCTTAA...GGCCCTGATGCTCTTTTTCAGCTGTAAGGTATTTCCTCCTCCTCTTCCACCTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR CAA 90 bp AACATCTTACTAAAACACTTTAAGACTTATCCATTATTGATGGATGCAGTGGCCGCAGGAGTCAGGCTGTaGGGAACCTCACACTCCCTC +
Preference number: 5 (lower is better)
Translates to: NILLKHFKTYPLLMDAVAAGVRL*GTSHSL
Trigger: GAGGGAGTGTGAGGTTCCCAACAGCCTGACTCCTGC...GGCCACTGCATCCATCAATAATGGATAAGTCTTAAAGTGTTTTAGTAAGATGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS TCA 90 bp GCACACAAAGACAGCATTCTCCATGTAAAGATAGGTCATCTGGCTTaGAAAGTTTGGCACCATCAATCGACATGCGATCAGGTCTTCAGA +
Preference number: 5 (lower is better)
Translates to: AHKDSILHVKIGHLA*KVWHHQSTCDQVFR
Trigger: TCTGAAGACCTGATCGCATGTCGATTGATGGTGCCAAACTTTTCAAGCCAGATGACCTATCTTTACATGGAGAATGCTGTCTTTGTGTGC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR CAA 90 bp AACATCTTACTAAAACACTTTAAGACTTATCCATTATTGATGGATGCAGTGGCCGCGCTGGAGTCGGGCTaGGTTGTCTGTCTGTTCACA +
Preference number: 5 (lower is better)
Translates to: NILLKHFKTYPLLMDAVAALESG*VVCLFT
Trigger: TGTGAACAGACAGACAACCAAGCCCGACTCCAGCGC...GGCCACTGCATCCATCAATAATGGATAAGTCTTAAAGTGTTTTAGTAAGATGTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS TCA 90 bp CATCTTCTTCCTCATCAATGTACTCCAGTAAGTCCAAGGCTTTCTTaGAATCATACTCATTGGCTCTTCTGTTTTCGTCACAGATATACA +
Preference number: 5 (lower is better)
Translates to: HLLPHQCTPVSPRLS*NHTHWLFCFRHRYT
Trigger: TGTATATCTGTGACGAAAACAGAAGAGCCAATGAGTATGATTTCAAGAAAGCCTTGGACTTACTGGAGTACATTGATGAGGAAGAAGATG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS-3UTR CAA 90 bp AACATCTTACTAAAACACTTTAAGACTTATCCATTATTGATGGATGCAGTGGCCAACGAGTTTCCATATTaGCCAAACCTAGCAGTGTTG +
Preference number: 5 (lower is better)
Translates to: NILLKHFKTYPLLMDAVANEFPY*PNLAVL
Trigger: CAACACTGCTAGGTTTGGCAAATATGGAAACTCGTT...GGCCACTGCATCCATCAATAATGGATAAGTCTTAAAGTGTTTTAGTAAGATGTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS CCA 72 bp CCCGTGCTGGCGCATGACTGCTGTGCGGATACCGGATaGACCACTTGTGGCTGTCCATGGCACATACTCTGG +
Preference number: 6 (lower is better)
Translates to: PVLAHDCCADTG*TTCGCPWHILW
Trigger: CCAGAGTATGTGCCATGGACAGCCACAAGTGGTCCATCCGGTATCCGCACAGCAGTCATGCGCCAGCACGGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS CCA 72 bp TGTCTCTCGGTCAGCAGCTGCTCTGGCAGGGTCTCCTaGTGTAGCAGGAAGCGCTCTTGCTCAGCCATGGCT +
Preference number: 6 (lower is better)
Translates to: CLSVSSCSGRVS*CSRKRSCSAMA
Trigger: AGCCATGGCTGAGCAAGAGCGCTTCCTGCTACACCAGGAGACCCTGCCAGAGCAGCTGCTGACCGAGAGACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS GCA 72 bp TGGCTCCCCACGGAGGACAGGATGAAACTTCCTCCCTaGACTGCTGTCAGGAACCTGCACATCTTCTCGCCT +
Preference number: 6 (lower is better)
Translates to: WLPTEDRMKLPP*TAVRNLHIFSP
Trigger: AGGCGAGAAGATGTGCAGGTTCCTGACAGCAGTGCAGGGAGGAAGTTTCATCCTGTCCTCCGTGGGGAGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS GCA 72 bp AAAGGGAAGAAACCCTCCGGCCAATCCCTGAGAGCATaGCTTGGCCCTGGGGCAGGACATGCTGGTGAATCT +
Preference number: 6 (lower is better)
Translates to: KGKKPSGQSLRA*LGPGAGHAGES
Trigger: AGATTCACCAGCATGTCCTGCCCCAGGGCCAAGGCATGCTCTCAGGGATTGGCCGGAGGGTTTCTTCCCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS GCA 72 bp ATTGCACTAAGACTCAGCTGTCTCTCGGTCAGCAGCTaGTCTGGCAGGGTCTCCTGGTGTAGCAGGAAGCGC +
Preference number: 6 (lower is better)
Translates to: IALRLSCLSVSS*SGRVSWCSRKR
Trigger: GCGCTTCCTGCTACACCAGGAGACCCTGCCAGAGCAGCTGCTGACCGAGAGACAGCTGAGTCTTAGTGCAAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS CCA 72 bp GTGCATACCAGGCAGGCCCACCCACCTTCATCGACATaGACAGAAAGCTGCTCGTCAGCCTCAGCCATTGTC +
Preference number: 6 (lower is better)
Translates to: VHTRQAHPPSST*TESCSSASAIV
Trigger: GACAATGGCTGAGGCTGACGAGCAGCTTTCTGTCCATGTCGATGAAGGTGGGTGGGCCTGCCTGGTATGCAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS CCA 72 bp CCAAATCCACACAGGTGTCTGAGTAGGTGTCTTCCCTaGCGAGGCTGGGCCAATAGCGGATGGACCCCTCTT +
Preference number: 6 (lower is better)
Translates to: PNPHRCLSRCLP*RGWANSGWTPL
Trigger: AAGAGGGGTCCATCCGCTATTGGCCCAGCCTCGCCAGGGAAGACACCTACTCAGACACCTGTGTGGATTTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS CAA 90 bp ACCTGGGACACCTCTCGAAAGAAGACATCGGCAGGAGTCAGGCTGTaGGGAACCTCACACTCCCTCTTGTTCAGGGCGAGCAGGATAGCT +
Preference number: 6 (lower is better)
Translates to: TWDTSRKKTSAGVRL*GTSHSLLFRASRIA
Trigger: AGCTATCCTGCTCGCCCTGAACAAGAGGGAGTGTGAGGTTCCCAACAGCCTGACTCCTGCCGATGTCTTCTTTCGAGAGGTGTCCCAGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS CAA 90 bp CACCTCTGCCCACTCCTGAGAGACCAACGCAACTTCACGCAGGACTaGTTCCTCATGCTCCAGGAGGCACTCACAGATAGTGTCCACCTG +
Preference number: 6 (lower is better)
Translates to: HLCPLLRDQRNFTQD*FLMLQEALTDSVHL
Trigger: CAGGTGGACACTATCTGTGAGTGCCTCCTGGAGCATGAGGAACAAGTCCTGCGTGAAGTTGCGTTGGTCTCTCAGGAGTGGGCAGAGGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS TCA 72 bp GCACATCTTCTCGCCTCCCAAATCCACACAGGTGTCTaGGTAGGTGTCTTCCCTGGCGAGGCTGGGCCAATA +
Preference number: 6 (lower is better)
Translates to: AHLLASQIHTGV*VGVFPGEAGPI
Trigger: TATTGGCCCAGCCTCGCCAGGGAAGACACCTACTCAGACACCTGTGTGGATTTGGGAGGCGAGAAGATGTGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS TCA 72 bp TCAATCGAACCAACTGGCTCCCCACGGAGGACAGGATaGAACTTCCTCCCTGCACTGCTGTCAGGAACCTGC +
Preference number: 6 (lower is better)
Translates to: SIEPTGSPRRTG*NFLPALLSGTC
Trigger: GCAGGTTCCTGACAGCAGTGCAGGGAGGAAGTTTCATCCTGTCCTCCGTGGGGAGCCAGTTGGTTCGATTGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS TCA 72 bp CTCACACTCCCTCTTGTTCAGGGCGAGCAGGATAGCTaGGTTCACCAGGTCTGGCAGTCGAGAGTGGTGGTT +
Preference number: 6 (lower is better)
Translates to: LTLPLVQGEQDS*VHQVWQSRVVV
Trigger: AACCACCACTCTCGACTGCCAGACCTGGTGAACTCAGCTATCCTGCTCGCCCTGAACAAGAGGGAGTGTGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS GCA 72 bp TACCATCTTCAGGATGATCCCGTGCTGGCGCATGACTaGTGTGCGGATACCGGATGGACCACTTGTGGCTGT +
Preference number: 6 (lower is better)
Translates to: YHLQDDPVLAHD*CADTGWTTCGC
Trigger: ACAGCCACAAGTGGTCCATCCGGTATCCGCACAGCAGTCATGCGCCAGCACGGGATCATCCTGAAGATGGTA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS GCA 72 bp TCTGGCAGGGTCTCCTGGTGTAGCAGGAAGCGCTCTTaGTCAGCCATGGCTTCAATCTTCTCTTGCAGCCTG +
Preference number: 6 (lower is better)
Translates to: SGRVSWCSRKRS*SAMASIFSCSL
Trigger: CAGGCTGCAAGAGAAGATTGAAGCCATGGCTGAGCAAGAGCGCTTCCTGCTACACCAGGAGACCCTGCCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS CAA 72 bp ACCTCTCGAAAGAAGACATCGGCAGGAGTCAGGCTGTaGGGAACCTCACACTCCCTCTTGTTCAGGGCGAGC +
Preference number: 6 (lower is better)
Translates to: TSRKKTSAGVRL*GTSHSLLFRAS
Trigger: GCTCGCCCTGAACAAGAGGGAGTGTGAGGTTCCCAACAGCCTGACTCCTGCCGATGTCTTCTTTCGAGAGGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS TCA 72 bp CAATACTTCTCTGCCAGAGAAGCTGCCCATGGGTACTaGCCTAGTGTGAGAAGGGGCGAGAGCAGCTCGGAT +
Preference number: 6 (lower is better)
Translates to: QYFSAREAAHGY*PSVRRGESSSD
Trigger: ATCCGAGCTGCTCTCGCCCCTTCTCACACTAGGTCAGTACCCATGGGCAGCTTCTCTGGCAGAGAAGTATTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS GCA 72 bp GAGACCAACGCAACTTCACGCAGGACTTGTTCCTCATaGTCCAGGAGGCACTCACAGATAGTGTCCACCTGG +
Preference number: 6 (lower is better)
Translates to: ETNATSRRTCSS*SRRHSQIVSTW
Trigger: CCAGGTGGACACTATCTGTGAGTGCCTCCTGGAGCATGAGGAACAAGTCCTGCGTGAAGTTGCGTTGGTCTC
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS CCA 72 bp TCATGCTCCAGGAGGCACTCACAGATAGTGTCCACCTaGGACACCTCTCGAAAGAAGACATCGGCAGGAGTC +
Preference number: 6 (lower is better)
Translates to: SCSRRHSQIVST*DTSRKKTSAGV
Trigger: GACTCCTGCCGATGTCTTCTTTCGAGAGGTGTCCCAGGTGGACACTATCTGTGAGTGCCTCCTGGAGCATGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS CAA 72 bp CTCCCGTGGAAATCGCTAGGGGGCAGCTGGAGTTCTTaGCAGACAGACAACTTAGTGACAGGCGACACAGCA +
Preference number: 6 (lower is better)
Translates to: LPWKSLGGSWSS*QTDNLVTGDTA
Trigger: TGCTGTGTCGCCTGTCACTAAGTTGTCTGTCTGCAAAGAACTCCAGCTGCCCCCTAGCGATTTCCACGGGAG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS GCA 72 bp CAGACTGATGAGTTGTGGTGCGGTCAACACAGGCATTaGACTAAGACTCAGCTGTCTCTCGGTCAGCAGCTG +
Preference number: 6 (lower is better)
Translates to: QTDELWCGQHRH*TKTQLSLGQQL
Trigger: CAGCTGCTGACCGAGAGACAGCTGAGTCTTAGTGCAATGCCTGTGTTGACCGCACCACAACTCATCAGTCTG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS CCA 72 bp AAATCAGCGCTCCCGTGGAAATCGCTAGGGGGCAGCTaGAGTTCTTTGCAGACAGACAACTTAGTGACAGGC +
Preference number: 6 (lower is better)
Translates to: KSALPWKSLGGS*SSLQTDNLVTG
Trigger: GCCTGTCACTAAGTTGTCTGTCTGCAAAGAACTCCAGCTGCCCCCTAGCGATTTCCACGGGAGCGCTGATTT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS CAA 72 bp CCACTCCTGAGAGACCAACGCAACTTCACGCAGGACTaGTTCCTCATGCTCCAGGAGGCACTCACAGATAGT +
Preference number: 6 (lower is better)
Translates to: PLLRDQRNFTQD*FLMLQEALTDS
Trigger: ACTATCTGTGAGTGCCTCCTGGAGCATGAGGAACAAGTCCTGCGTGAAGTTGCGTTGGTCTCTCAGGAGTGG
54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS TCA 72 bp CATGACAGAAACAGCCTGCACAGAATGGACTTCACCTaGGGTCGCAGCATAAGACAGGGCCACCAAATCAGC +
Preference number: 6 (lower is better)
Translates to: HDRNSLHRMDFT*GRSIRQGHQIS
Trigger: GCTGATTTGGTGGCCCTGTCTTATGCTGCGACCTCAGGTGAAGTCCATTCTGTGCAGGCTGTTTCTGTCATG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS TCA 72 bp ATGCTCTCCTTCAGGGTCCTGTGCACATCCCAGCTGTaGACCTGCTTCTCTGAAGAATCGTCCAGTTCCCAT +
Preference number: 6 (lower is better)
Translates to: MLSFRVLCTSQL*TCFSEESSSSH
Trigger: ATGGGAACTGGACGATTCTTCAGAGAAGCAGGTTCACAGCTGGGATGTGCACAGGACCCTGAAGGAGAGCAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS TCA 72 bp CTTCATAGTTACTTTCAGACCCCCAAACAGCATCGGTaGTGCTCTCCTTCAGGGTCCTGTGCACATCCCAGC +
Preference number: 6 (lower is better)
Translates to: LHSYFQTPKQHR*CSPSGSCAHPS
Trigger: GCTGGGATGTGCACAGGACCCTGAAGGAGAGCATCACCGATGCTGTTTGGGGGTCTGAAAGTAACTATGAAG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS CAA 72 bp GTCAGCAAACTGGGTCATGTAGCGCTGGAGTCGGGCTaGGTTGTCTGTCTGTTCACACATCTGAACCAGGAT +
Preference number: 6 (lower is better)
Translates to: VSKLGHVALESG*VVCLFTHLNQD
Trigger: ATCCTGGTTCAGATGTGTGAACAGACAGACAACCAAGCCCGACTCCAGCGCTACATGACCCAGTTTGCTGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS CAA 90 bp AAATCAGCGCTCCCGTGGAAATCGCTAGGGGGCAGCTGGAGTTCTTaGCAGACAGACAACTTAGTGACAGGCGACACAGCAATCTTCCAA +
Preference number: 6 (lower is better)
Translates to: KSALPWKSLGGSWSS*QTDNLVTGDTAIFQ
Trigger: TTGGAAGATTGCTGTGTCGCCTGTCACTAAGTTGTCTGTCTGCAAAGAACTCCAGCTGCCCCCTAGCGATTTCCACGGGAGCGCTGATTT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS CCA 72 bp ATCTTTCCTGAGCTTTCAGGAATCAATCGAACCAACTaGCTCCCCACGGAGGACAGGATGAAACTTCCTCCC +
Preference number: 6 (lower is better)
Translates to: IFPELSGINRTN*LPTEDRMKLPP
Trigger: GGGAGGAAGTTTCATCCTGTCCTCCGTGGGGAGCCAGTTGGTTCGATTGATTCCTGAAAGCTCAGGAAAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS TCA 72 bp TTGCTTTCAGAACAAACTCAAAGTAAGAGTTGGACTTaGGGCTTCCCAGCTGCTCTGCTCGCAGTAGGTCCG +
Preference number: 6 (lower is better)
Translates to: LLSEQTQSKSWT*GFPAALLAVGP
Trigger: CGGACCTACTGCGAGCAGAGCAGCTGGGAAGCCTCAAGTCCAACTCTTACTTTGAGTTTGTTCTGAAAGCAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS GCA 72 bp GCTCGGATCTTTTCTGCAGGTACTCCACTTCCAGACTaGTGTATCGTTCTTGGTCACTGGATTTCTCTAGCG +
Preference number: 6 (lower is better)
Translates to: ARIFSAGTPLPD*CIVLGHWISLA
Trigger: CGCTAGAGAAATCCAGTGACCAAGAACGATACAGCAGTCTGGAAGTGGAGTACCTGCAGAAAAGATCCGAGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS GCA 72 bp TCATCTTTGCCATCTGAACCAGACCAGTCATCTCTCTaGAGTGCTCTGCACAGAATCTCCAGCTTCAGGTCA +
Preference number: 6 (lower is better)
Translates to: SSLPSEPDQSSL*SALHRISSFRS
Trigger: TGACCTGAAGCTGGAGATTCTGTGCAGAGCACTGCAGAGAGATGACTGGTCTGGTTCAGATGGCAAAGATGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS CCA 72 bp TGCAGGTACTCCACTTCCAGACTGCTGTATCGTTCTTaGTCACTGGATTTCTCTAGCGACTTCAGCTGGGAA +
Preference number: 6 (lower is better)
Translates to: CRYSTSRLLYRS*SLDFSSDFSWE
Trigger: TTCCCAGCTGAAGTCGCTAGAGAAATCCAGTGACCAAGAACGATACAGCAGTCTGGAAGTGGAGTACCTGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS CAA 90 bp TGTCCCTCTGATTGGATAGGAGCTCAAACGTCTAAACAAGCCGACTaGGTGAAGGAAGTCCACCAAGAGGCAGTGAGCTTTCATCTTGTC +
Preference number: 6 (lower is better)
Translates to: CPSDWIGAQTSKQAD*VKEVHQEAVSFHLV
Trigger: GACAAGATGAAAGCTCACTGCCTCTTGGTGGACTTCCTTCACCAAGTCGGCTTGTTTAGACGTTTGAGCTCCTATCCAATCAGAGGGACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS TCA 72 bp CTGCATCTGACATCTGGTTACCATTGTCTTCCACCGTaGTCACAGAGTAATAGACAAGACAGGGGCTGTCTC +
Preference number: 6 (lower is better)
Translates to: LHLTSGYHCLPP*SQSNRQDRGCL
Trigger: GAGACAGCCCCTGTCTTGTCTATTACTCTGTGATCACGGTGGAAGACAATGGTAACCAGATGTCAGATGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS TCA 72 bp GGGGTTATACTGAGTCACTTCTACGGTGACTGCATCTaGCATCTGGTTACCATTGTCTTCCACCGTGATCAC +
Preference number: 6 (lower is better)
Translates to: GVILSHFYGDCI*HLVTIVFHRDH
Trigger: GTGATCACGGTGGAAGACAATGGTAACCAGATGTCAGATGCAGTCACCGTAGAAGTGACTCAGTATAACCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS CAA 72 bp GATTGGATAGGAGCTCAAACGTCTAAACAAGCCGACTaGGTGAAGGAAGTCCACCAAGAGGCAGTGAGCTTT +
Preference number: 6 (lower is better)
Translates to: DWIGAQTSKQAD*VKEVHQEAVSF
Trigger: AAAGCTCACTGCCTCTTGGTGGACTTCCTTCACCAAGTCGGCTTGTTTAGACGTTTGAGCTCCTATCCAATC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS CAA 90 bp AAAATTCTGGTCAGCAAACTGGGTCATGTAGCGCTGGAGTCGGGCTaGGTTGTCTGTCTGTTCACACATCTGAACCAGGATATCAAAGTC +
Preference number: 6 (lower is better)
Translates to: KILVSKLGHVALESG*VVCLFTHLNQDIKV
Trigger: GACTTTGATATCCTGGTTCAGATGTGTGAACAGACAGACAACCAAGCCCGACTCCAGCGCTACATGACCCAGTTTGCTGACCAGAATTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS CAA 90 bp CTCATTGGCTCTTCTGTTTTCGTCACAGATATACAGACTGATGAGTaGTGGTGCGGTCAACACAGGCATTGCACTAAGACTCAGCTGTCT +
Preference number: 6 (lower is better)
Translates to: LIGSSVFVTDIQTDE*WCGQHRHCTKTQLS
Trigger: AGACAGCTGAGTCTTAGTGCAATGCCTGTGTTGACCGCACCACAACTCATCAGTCTGTATATCTGTGACGAAAACAGAAGAGCCAATGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS TCA 72 bp GTCTTTAGACACTTCGATTGGATCATCTTTGCCATCTaGACCAGACCAGTCATCTCTCTGCAGTGCTCTGCA +
Preference number: 6 (lower is better)
Translates to: VFRHFDWIIFAI*TRPVISLQCSA
Trigger: TGCAGAGCACTGCAGAGAGATGACTGGTCTGGTTCAGATGGCAAAGATGATCCAATCGAAGTGTCTAAAGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS CCA 72 bp AGTAGGTCCGTCACCTCTGGCAAGTACTCGCTGAGCTaGATGCCGTCTTTTATAAGTTTCTGCAAGATCTTT +
Preference number: 6 (lower is better)
Translates to: SRSVTSGKYSLS*MPSFISFCKIF
Trigger: AAAGATCTTGCAGAAACTTATAAAAGACGGCATCCAGCTCAGCGAGTACTTGCCAGAGGTGACGGACCTACT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS TCA 72 bp CATTGTCAGGGCTTCCATGATCTTAACAGGGAGAGATaGTCCAAACACTCTCACATCGTAGTTCACAGACTC +
Preference number: 6 (lower is better)
Translates to: HCQGFHDLNRER*SKHSHIVVHRL
Trigger: GAGTCTGTGAACTACGATGTGAGAGTGTTTGGATCATCTCTCCCTGTTAAGATCATGGAAGCCCTGACAATG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS TCA 72 bp CCTGCTTCTCTGAAGAATCGTCCAGTTCCCATTTGCTaGTGTTTGAACTCGTCAGGGTGTAGAAACTTGATC +
Preference number: 6 (lower is better)
Translates to: PASLKNRPVPIC*CLNSSGCRNLI
Trigger: GATCAAGTTTCTACACCCTGACGAGTTCAAACATCAGCAAATGGGAACTGGACGATTCTTCAGAGAAGCAGG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS CCA 72 bp TCTGTTTTCGTCACAGATATACAGACTGATGAGTTGTaGTGCGGTCAACACAGGCATTGCACTAAGACTCAG +
Preference number: 6 (lower is better)
Translates to: SVFVTDIQTDEL*CGQHRHCTKTQ
Trigger: CTGAGTCTTAGTGCAATGCCTGTGTTGACCGCACCACAACTCATCAGTCTGTATATCTGTGACGAAAACAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS CAA 90 bp AGCACACAAAGACAGCATTCTCCATGTAAAGATAGGTCATCTGGCTaGAAAAGTTTGGCACCATCAATCGACATGCGATCAGGTCTTCAG +
Preference number: 6 (lower is better)
Translates to: STQRQHSPCKDRSSG*KSLAPSIDMRSGLQ
Trigger: CTGAAGACCTGATCGCATGTCGATTGATGGTGCCAAACTTTTCAAGCCAGATGACCTATCTTTACATGGAGAATGCTGTCTTTGTGTGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS CAA 90 bp ATCTTTACAAACACACTGTCTTTAGACACTTCGATTGGATCATCTTaGCCATCTGAACCAGACCAGTCATCTCTCTGCAGTGCTCTGCAC +
Preference number: 6 (lower is better)
Translates to: IFTNTLSLDTSIGSS*PSEPDQSSLCSALH
Trigger: GTGCAGAGCACTGCAGAGAGATGACTGGTCTGGTTCAGATGGCAAAGATGATCCAATCGAAGTGTCTAAAGACAGTGTGTTTGTAAAGAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS CAA 72 bp TCTTCTGTTTTCGTCACAGATATACAGACTGATGAGTaGTGGTGCGGTCAACACAGGCATTGCACTAAGACT +
Preference number: 6 (lower is better)
Translates to: SSVFVTDIQTDE*WCGQHRHCTKT
Trigger: AGTCTTAGTGCAATGCCTGTGTTGACCGCACCACAACTCATCAGTCTGTATATCTGTGACGAAAACAGAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS CAA 72 bp AACACACTGTCTTTAGACACTTCGATTGGATCATCTTaGCCATCTGAACCAGACCAGTCATCTCTCTGCAGT +
Preference number: 6 (lower is better)
Translates to: NTLSLDTSIGSS*PSEPDQSSLCS
Trigger: ACTGCAGAGAGATGACTGGTCTGGTTCAGATGGCAAAGATGATCCAATCGAAGTGTCTAAAGACAGTGTGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS CAA 72 bp AGACAGCATTCTCCATGTAAAGATAGGTCATCTGGCTaGAAAAGTTTGGCACCATCAATCGACATGCGATCA +
Preference number: 6 (lower is better)
Translates to: RQHSPCKDRSSG*KSLAPSIDMRS
Trigger: TGATCGCATGTCGATTGATGGTGCCAAACTTTTCAAGCCAGATGACCTATCTTTACATGGAGAATGCTGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8
CDS CAA 90 bp ACATCTTCTTCCTCATCAATGTACTCCAGTAAGTCCAAGGCTTTCTaGAAATCATACTCATTGGCTCTTCTGTTTTCGTCACAGATATAC +
Preference number: 6 (lower is better)
Translates to: TSSSSSMYSSKSKAF*KSYSLALLFSSQIY
Trigger: GTATATCTGTGACGAAAACAGAAGAGCCAATGAGTATGATTTCAAGAAAGCCTTGGACTTACTGGAGTACATTGATGAGGAAGAAGATGT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044795.8