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Pregenerated sensors for NUFIP1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000022009

Ensembl transcript IDs: ENSMUST00000022586.2

Found 84 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp GGTGGGAGCATGGCAGCATCCAGGCAGGCATGCTGCAGGAATTGCTaGAAGCTCTACATCTTCATCTGTAGGCCTCTAAGAGAAGACTCC +
Preference number: 1 (lower is better)
Translates to: GGSMAASRQACCRNC*KLYIFICRPLREDS
Trigger: GGAGTCTTCTCTTAGAGGCCTACAGATGAAGATGTAGAGCTTTCAGCAATTCCTGCAGCATGCCTGCCTGGATGCTGCCATGCTCCCACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR CCA 90 bp AGACAGACAGACAGAGCAGTCATGGAGGTCAAGGGTACAACTCTGTaGAGTTGGCTCTCTCCATTTTTATGTAGGGTTTTTGAGACAGAA +
Preference number: 1 (lower is better)
Translates to: RQTDRAVMEVKGTTL*SWLSPFLCRVFETE
Trigger: TTCTGTCTCAAAAACCCTACATAAAAATGGAGAGAGCCAACTCCACAGAGTTGTACCCTTGACCTCCATGACTGCTCTGTCTGTCTGTCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR CCA 90 bp CACACCTACTCTAACAGGGCTATACCTCCTAACAGTGCCATTCCCTaGGCCAAGCATATACAAACCATCACAATCATCATAGGTTTGCAT +
Preference number: 1 (lower is better)
Translates to: HTYSNRAIPPNSAIP*AKHIQTITIIIGLH
Trigger: ATGCAAACCTATGATGATTGTGATGGTTTGTATATGCTTGGCCCAGGGAATGGCACTGTTAGGAGGTATAGCCCTGTTAGAGTAGGTGTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR GCA 90 bp AAGGCAGAAATGCACAATGACCACAAGTCAATTCAAAATCCAATGTaGAATGAATCTAAAGTGATTCTGGCTGCACACGCTGGGGCTGTG +
Preference number: 1 (lower is better)
Translates to: KAEMHNDHKSIQNPM*NESKVILAAHAGAV
Trigger: CACAGCCCCAGCGTGTGCAGCCAGAATCACTTTAGATTCATTGCACATTGGATTTTGAATTGACTTGTGGTCATTGTGCATTTCTGCCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR CCA 90 bp CCACATGGTGGCTCACAACCATCTATAAGATCTGATGCCCTCTTCTaGCACACAAGTGTACATGCAGAGAAAGCACTGATACATAAACAA +
Preference number: 1 (lower is better)
Translates to: PHGGSQPSIRSDALF*HTSVHAEKALIHKQ
Trigger: TTGTTTATGTATCAGTGCTTTCTCTGCATGTACACTTGTGTGCCAGAAGAGGGCATCAGATCTTATAGATGGTTGTGAGCCACCATGTGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR TCA 90 bp AGACAGAACTCGGTGTCAGGCTTGTGTGTAAAGTGCTCTACCCACTaGGCCTCTTTAAAATACTACCCTTGGTCACTGTTAAATAACTCT +
Preference number: 1 (lower is better)
Translates to: RQNSVSGLCVKCSTH*ASLKYYPWSLLNNS
Trigger: AGAGTTATTTAACAGTGACCAAGGGTAGTATTTTAAAGAGGCTCAGTGGGTAGAGCACTTTACACACAAGCCTGACACCGAGTTCTGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR TCA 90 bp ATTTGCCTCTTGCTATGCTTCACACGTTCATATCAAATCAGTGTATaGTTAGGCTCCATGGTGTTTGATTTTAAAAACTGCTGTTTGCAC +
Preference number: 1 (lower is better)
Translates to: ICLLLCFTRSYQISV*LGSMVFDFKNCCLH
Trigger: GTGCAAACAGCAGTTTTTAAAATCAAACACCATGGAGCCTAATCATACACTGATTTGATATGAACGTGTGAAGCATAGCAAGAGGCAAAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR-3UTR TCA 90 bp ATTCTGGCTGCACACGCTGGGGCTGTGTCCTGTGACTTCGCTGTGGCTTTAAGCCCCTTCCAGAGGTCCTaGGTTCAAATCCCGGTAACC +
Preference number: 2 (lower is better)
Translates to: ILAAHAGAVSCDFAVALSPFQRS*VQIPVT
Trigger: GGTTACCGGGATTTGAACTCAGGACCTCTGGAAGGG...GCTTAAAGCCACAGCGAAGTCACAGGACACAGCCCCAGCGTGTGCAGCCAGAAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR-3UTR TCA 90 bp GTGGAAAGCTTAAGAACCCCATTCAGCGGGGCCTGGAGAGATGGCTCAGCGGTTCAGGTGCTTTACAGATaGGTGTGGAAACGGGAGACA +
Preference number: 2 (lower is better)
Translates to: VESLRTPFSGAWRDGSAVQVLYR*VWKRET
Trigger: TGTCTCCCGTTTCCACACTCATCTGTAAAGCACCTG...AACCGCTGAGCCATCTCTCCAGGCCCCGCTGAATGGGGTTCTTAAGCTTTCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR-3UTR TCA 90 bp ATTCTGGCTGCACACGCTGGGGCTGTGTCCTGTGACTTCGCTGTGGCTTTAAGCTCTACCAGTGACATTTaGTTTGTATACCTGTCTACC +
Preference number: 2 (lower is better)
Translates to: ILAAHAGAVSCDFAVALSSTSDI*FVYLST
Trigger: GGTAGACAGGTATACAAATCAAATGTCACTGGTAGA...GCTTAAAGCCACAGCGAAGTCACAGGACACAGCCCCAGCGTGTGCAGCCAGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR-3UTR GCA 90 bp ATTCTGGCTGCACACGCTGGGGCTGTGTCCTGTGACTTCGCTGTGGCTTTAAGCTTAAAAACTGCTGTTTaGACTGCTGACTTGAGCATC +
Preference number: 2 (lower is better)
Translates to: ILAAHAGAVSCDFAVALSLKTAV*TADLSI
Trigger: GATGCTCAAGTCAGCAGTGCAAACAGCAGTTTTTAA...GCTTAAAGCCACAGCGAAGTCACAGGACACAGCCCCAGCGTGTGCAGCCAGAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR-3UTR TCA 90 bp CAGCATCCAGGCAGGCATGCTGCAGGAATTGCTGAAAGCTCTACATCTTCATCTAGCTGCAGAAGTTGCTaGTTTTCTCTCCTTACTCAA +
Preference number: 2 (lower is better)
Translates to: QHPGRHAAGIAESSTSSSSCRSC*FSLLTQ
Trigger: TTGAGTAAGGAGAGAAAATCAGCAACTTCTGCAGCT...AGATGAAGATGTAGAGCTTTCAGCAATTCCTGCAGCATGCCTGCCTGGATGCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR-3UTR TCA 90 bp GGCTCTCTCCATTTTTATGTAGGGTTTTTGAGACAGAACTCGGTGTCAGGCTTGACCATCTATAAGATCTaGTGCCCTCTTCTGGCACAC +
Preference number: 2 (lower is better)
Translates to: GSLHFYVGFLRQNSVSGLTIYKI*CPLLAH
Trigger: GTGTGCCAGAAGAGGGCATCAGATCTTATAGATGGT...CAAGCCTGACACCGAGTTCTGTCTCAAAAACCCTACATAAAAATGGAGAGAGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR-3UTR TCA 90 bp GGCTCTCTCCATTTTTATGTAGGGTTTTTGAGACAGAACTCGGTGTCAGGCTTGGCAATGAATCTAAAGTaGTTCTGGCTGCACACGCTG +
Preference number: 2 (lower is better)
Translates to: GSLHFYVGFLRQNSVSGLAMNLK*FWLHTL
Trigger: CAGCGTGTGCAGCCAGAATCACTTTAGATTCATTGC...CAAGCCTGACACCGAGTTCTGTCTCAAAAACCCTACATAAAAATGGAGAGAGCC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR CAA 90 bp GTACAACTCTGTGGAGTTGGCTCTCTCCATTTTTATGTAGGGTTTTaGAGACAGAACTCGGTGTCAGGCTTGTGTGTAAAGTGCTCTACC +
Preference number: 2 (lower is better)
Translates to: VQLCGVGSLHFYVGF*RQNSVSGLCVKCST
Trigger: GGTAGAGCACTTTACACACAAGCCTGACACCGAGTTCTGTCTCAAAAACCCTACATAAAAATGGAGAGAGCCAACTCCACAGAGTTGTAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR-3UTR CCA 90 bp GCAGAATCGCTTTGTTTCTGGGGGAAACACACCTGTTCCCAAAAGCAGGATATTGGAAACAGAACAGAATaGGTTGCTAGGTACCTGTTC +
Preference number: 2 (lower is better)
Translates to: AESLCFWGKHTCSQKQDIGNRTE*VARYLF
Trigger: GAACAGGTACCTAGCAACCCATTCTGTTCTGTTTCC...AATATCCTGCTTTTGGGAACAGGTGTGTTTCCCCCAGAAACAAAGCGATTCTGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR-3UTR TCA 90 bp CTGCTCTCACGGTTTGGCTATAGAAAACCAAGACTTGTAATATTTGCCTCTTGCAACTCTGGAAAAGTCTaGAGATGTTCTACGTCCTGC +
Preference number: 2 (lower is better)
Translates to: LLSRFGYRKPRLVIFASCNSGKV*RCSTSC
Trigger: GCAGGACGTAGAACATCTTCAGACTTTTCCAGAGTT...GCAAGAGGCAAATATTACAAGTCTTGGTTTTCTATAGCCAAACCGTGAGAGCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR-3UTR GCA 90 bp CTGCTCTCACGGTTTGGCTATAGAAAACCAAGACTTGTAATATTTGCCTCTTGCTGGTGTTCTCTCAGGTaGTTTACAGATGAGTGTGGA +
Preference number: 2 (lower is better)
Translates to: LLSRFGYRKPRLVIFASCWCSLR*FTDECG
Trigger: TCCACACTCATCTGTAAAGCACCTGAGAGAACACCA...GCAAGAGGCAAATATTACAAGTCTTGGTTTTCTATAGCCAAACCGTGAGAGCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR-3UTR GCA 90 bp GGCCAAGCATATACAAACCATCACAATCATCATAGGTTTGCATACATGTGTTGTGGTATTCCCAGCAAATaGTACACAGCCAGCTTCTTC +
Preference number: 2 (lower is better)
Translates to: GQAYTNHHNHHRFAYMCCGIPSK*YTASFF
Trigger: GAAGAAGCTGGCTGTGTAGCATTTGCTGGGAATACC...ACAACACATGTATGCAAACCTATGATGATTGTGATGGTTTGTATATGCTTGGCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR-3UTR CCA 90 bp GGCTCTCTCCATTTTTATGTAGGGTTTTTGAGACAGAACTCGGTGTCAGGCTTGGATCATTCACCTGATTaGTATGCAAATATGCTTCTC +
Preference number: 2 (lower is better)
Translates to: GSLHFYVGFLRQNSVSGLDHSPD*YANMLL
Trigger: GAGAAGCATATTTGCATACCAATCAGGTGAATGATC...CAAGCCTGACACCGAGTTCTGTCTCAAAAACCCTACATAAAAATGGAGAGAGCC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR-3UTR GCA 90 bp TTCCCTATTACCCAGTATCTTCAACTCTTAATTAACTCAACCACAGTCTTCCTTGCACACAAGTGTACATaGAGAGAAAGCACTGATACA +
Preference number: 2 (lower is better)
Translates to: FPITQYLQLLINSTTVFLAHKCT*RESTDT
Trigger: TGTATCAGTGCTTTCTCTGCATGTACACTTGTGTGC...AAGGAAGACTGTGGTTGAGTTAATTAAGAGTTGAAGATACTGGGTAATAGGGAA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR-3UTR CCA 90 bp ACATTTGATTTGTATACCTGTCTACCAGTGACGTTTGATTTGTATACCTGTCTACTCCTTACTCAAGGATaGTGTTCTCTCAGGTGCTTT +
Preference number: 2 (lower is better)
Translates to: TFDLYTCLPVTFDLYTCLLLTQG*CSLRCF
Trigger: AAAGCACCTGAGAGAACACCATCCTTGAGTAAGGAG...TAGACAGGTATACAAATCAAACGTCACTGGTAGACAGGTATACAAATCAAATGT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR-3UTR TCA 90 bp TTCCCTATTACCCAGTATCTTCAACTCTTAATTAACTCAACCACAGTCTTCCTTGGCAGAAATGCACAATaGCCACAAGTCAATTCAAAA +
Preference number: 2 (lower is better)
Translates to: FPITQYLQLLINSTTVFLGRNAQ*PQVNSK
Trigger: TTTTGAATTGACTTGTGGTCATTGTGCATTTCTGCC...AAGGAAGACTGTGGTTGAGTTAATTAAGAGTTGAAGATACTGGGTAATAGGGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR-3UTR GCA 90 bp GGCCAAGCATATACAAACCATCACAATCATCATAGGTTTGCATACATGTGTTGTAAGACTTGTAATATTTaGCTCTTGCTATGCTTCACA +
Preference number: 2 (lower is better)
Translates to: GQAYTNHHNHHRFAYMCCKTCNI*LLLCFT
Trigger: TGTGAAGCATAGCAAGAGGCAAATATTACAAGTCTT...ACAACACATGTATGCAAACCTATGATGATTGTGATGGTTTGTATATGCTTGGCC
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR CCA 72 bp CTAGTGGAAAGCTTAAGAACCCCATTCAGCGGGGCCTaGAGAGATGGCTCAGCGGTTAAGAGCACTGGCTAC +
Preference number: 3 (lower is better)
Translates to: LVESLRTPFSGA*RDGSAVKSTGY
Trigger: GTAGCCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGGCCCCGCTGAATGGGGTTCTTAAGCTTTCCACTAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR CCA 72 bp CAAACAGGGTCGCTCCCAACAATAAAGGTGGGAGCATaGCAGCATCCAGGCAGGCATGCTGCAGGAATTGCT +
Preference number: 3 (lower is better)
Translates to: QTGSLPTIKVGA*QHPGRHAAGIA
Trigger: AGCAATTCCTGCAGCATGCCTGCCTGGATGCTGCCATGCTCCCACCTTTATTGTTGGGAGCGACCCTGTTTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR CCA 72 bp ACACACTCCGCACTGCGCCTACCATCACACTACAAATaGCACCTCAAACCTAAGCTCAGACTCCAGACAGCT +
Preference number: 3 (lower is better)
Translates to: THSALRLPSHYK*HLKPKLRLQTA
Trigger: AGCTGTCTGGAGTCTGAGCTTAGGTTTGAGGTGCCATTTGTAGTGTGATGGTAGGCGCAGTGCGGAGTGTGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR-3UTR CAA 90 bp CAAATGCTACACAGCCAGCTTCTTCAACTGTGGATGTGTGCAACTGCGTGGCAATCCCAGCTGCAGAAGTaGCTGATTTTCTCTCCTTAC +
Preference number: 3 (lower is better)
Translates to: QMLHSQLLQLWMCATAWQSQLQK*LIFSPY
Trigger: GTAAGGAGAGAAAATCAGCAACTTCTGCAGCTGGGA...TTGCCACGCAGTTGCACACATCCACAGTTGAAGAAGCTGGCTGTGTAGCATTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR-3UTR CAA 90 bp CAAATGCTACACAGCCAGCTTCTTCAACTGTGGATGTGTGCAACTGCGTGGCAATCATACAGAGATTCCTaGGACAAAAGGAGGTCACTA +
Preference number: 3 (lower is better)
Translates to: QMLHSQLLQLWMCATAWQSYRDS*DKRRSL
Trigger: TAGTGACCTCCTTTTGTCCAAGGAATCTCTGTATGA...TTGCCACGCAGTTGCACACATCCACAGTTGAAGAAGCTGGCTGTGTAGCATTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR TCA 72 bp GTAACCACATGGTGGCTCACAACCATCTATAAGATCTaGTGCCCTCTTCTGGCACACAAGTGTACATGCAGA +
Preference number: 3 (lower is better)
Translates to: VTTWWLTTIYKI*CPLLAHKCTCR
Trigger: TCTGCATGTACACTTGTGTGCCAGAAGAGGGCATCAGATCTTATAGATGGTTGTGAGCCACCATGTGGTTAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR CCA 72 bp GGCTCACAACCATCTATAAGATCTGATGCCCTCTTCTaGCACACAAGTGTACATGCAGAGAAAGCACTGATA +
Preference number: 3 (lower is better)
Translates to: GSQPSIRSDALF*HTSVHAEKALI
Trigger: TATCAGTGCTTTCTCTGCATGTACACTTGTGTGCCAGAAGAGGGCATCAGATCTTATAGATGGTTGTGAGCC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR CCA 72 bp GACAGAGCAGTCATGGAGGTCAAGGGTACAACTCTGTaGAGTTGGCTCTCTCCATTTTTATGTAGGGTTTTT +
Preference number: 3 (lower is better)
Translates to: DRAVMEVKGTTL*SWLSPFLCRVF
Trigger: AAAAACCCTACATAAAAATGGAGAGAGCCAACTCCACAGAGTTGTACCCTTGACCTCCATGACTGCTCTGTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR-3UTR CAA 90 bp GCAGAATCGCTTTGTTTCTGGGGGAAACACACCTGTTCCCAAAAGCAGGATATTTGTAATATTTGCCTCTaGCTATGCTTCACACGTTCA +
Preference number: 3 (lower is better)
Translates to: AESLCFWGKHTCSQKQDICNICL*LCFTRS
Trigger: TGAACGTGTGAAGCATAGCAAGAGGCAAATATTACA...AATATCCTGCTTTTGGGAACAGGTGTGTTTCCCCCAGAAACAAAGCGATTCTGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR GCA 72 bp TGTGTGCAACTGCGTGGCAACAGTAAAAGGCAGAAATaGACAATGACCACAAGTCAATTCAAAATCCAATGT +
Preference number: 3 (lower is better)
Translates to: CVQLRGNSKRQK*TMTTSQFKIQC
Trigger: ACATTGGATTTTGAATTGACTTGTGGTCATTGTGCATTTCTGCCTTTTACTGTTGCCACGCAGTTGCACACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR GCA 72 bp ATGCACAATGACCACAAGTCAATTCAAAATCCAATGTaGAATGAATCTAAAGTGATTCTGGCTGCACACGCT +
Preference number: 3 (lower is better)
Translates to: MHNDHKSIQNPM*NESKVILAAHA
Trigger: AGCGTGTGCAGCCAGAATCACTTTAGATTCATTGCACATTGGATTTTGAATTGACTTGTGGTCATTGTGCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR-3UTR CAA 90 bp GGCCAAGCATATACAAACCATCACAATCATCATAGGTTTGCATACATGTGTTGTTTTTATGTAGGGTTTTaGAGACAGAACTCGGTGTCA +
Preference number: 3 (lower is better)
Translates to: GQAYTNHHNHHRFAYMCCFYVGF*RQNSVS
Trigger: TGACACCGAGTTCTGTCTCAAAAACCCTACATAAAA...ACAACACATGTATGCAAACCTATGATGATTGTGATGGTTTGTATATGCTTGGCC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR TCA 72 bp TTGCTATGCTTCACACGTTCATATCAAATCAGTGTATaGTTAGGCTCCATGGTGTTTGATTTTAAAAACTGC +
Preference number: 3 (lower is better)
Translates to: LLCFTRSYQISV*LGSMVFDFKNC
Trigger: GCAGTTTTTAAAATCAAACACCATGGAGCCTAATCATACACTGATTTGATATGAACGTGTGAAGCATAGCAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR CCA 72 bp TGTTTCAACATTAACAATTACAAAATCAGTCAACTCTaGAAAAGTCTGAAGATGTTCTACGTCCTGCAACAT +
Preference number: 3 (lower is better)
Translates to: CFNINNYKISQL*KSLKMFYVLQH
Trigger: ATGTTGCAGGACGTAGAACATCTTCAGACTTTTCCAGAGTTGACTGATTTTGTAATTGTTAATGTTGAAACA
35% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS-3UTR CCA 90 bp AGAACCCCATTCAGCGGGGCCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGGCCTCCGAGCCCGCCACTaGGGACGACAGAGGAGGTGG +
Preference number: 4 (lower is better)
Translates to: RTPFSGAWRDGSAVKSTGLRARH*GRQRRW
Trigger: CCACCTCCTCTGTCGTCCCCAGTGGCGGGCTCGGAG...GCCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGGCCCCGCTGAATGGGGTTCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS-3UTR CCA 90 bp AGAACCCCATTCAGCGGGGCCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGGCGTGGCGGCGGCAGCATaGCCCAGTACACCCAGTTGT +
Preference number: 4 (lower is better)
Translates to: RTPFSGAWRDGSAVKSTGVAAAA*PSTPSC
Trigger: ACAACTGGGTGTACTGGGCCATGCTGCCGCCGCCAC...GCCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGGCCCCGCTGAATGGGGTTCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS-3UTR CCA 90 bp CTGGCTACCCTTCCAGAGGTCCTGAGTTCAAATCCCGGTAACCACATGGTGGCTGGACGACAGAGGAGGTaGTGGCGGCGGCAGCATGGC +
Preference number: 4 (lower is better)
Translates to: LATLPEVLSSNPGNHMVAGRQRR*WRRQHG
Trigger: GCCATGCTGCCGCCGCCACCACCTCCTCTGTCGTCC...AGCCACCATGTGGTTACCGGGATTTGAACTCAGGACCTCTGGAAGGGTAGCCAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS-3UTR CCA 90 bp CACTACAAATGGCACCTCAAACCTAAGCTCAGACTCCAGACAGCTGTAGGTCTGCGACAGAGGAGGTGGTaGCGGCGGCAGCATGGCCCA +
Preference number: 4 (lower is better)
Translates to: HYKWHLKPKLRLQTAVGLRQRRW*RRQHGP
Trigger: TGGGCCATGCTGCCGCCGCCACCACCTCCTCTGTCG...CAGACCTACAGCTGTCTGGAGTCTGAGCTTAGGTTTGAGGTGCCATTTGTAGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS-3UTR GCA 90 bp GAACCCCATTCAGCGGGGCCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGGCTGGCACTACAGTCCTTTaGGCTTTCTCTTCCTTATCA +
Preference number: 4 (lower is better)
Translates to: EPHSAGPGEMAQRLRALAGTTVL*AFSSLS
Trigger: TGATAAGGAAGAGAAAGCGCAAAGGACTGTAGTGCC...AGCCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGGCCCCGCTGAATGGGGTTC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS-3UTR CCA 90 bp CTGGCTACCCTTCCAGAGGTCCTGAGTTCAAATCCCGGTAACCACATGGTGGCTGACTCAGAGTCGCTGTaGATCAAAGCACCTAGAGGG +
Preference number: 4 (lower is better)
Translates to: LATLPEVLSSNPGNHMVADSESL*IKAPRG
Trigger: CCCTCTAGGTGCTTTGATCCACAGCGACTCTGAGTC...AGCCACCATGTGGTTACCGGGATTTGAACTCAGGACCTCTGGAAGGGTAGCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS-3UTR TCA 90 bp CTGGCTACCCTTCCAGAGGTCCTGAGTTCAAATCCCGGTAACCACATGGTGGCTCTTCTGCTTCAGTCTTaGTGGGAGCTTCTTCTGGCT +
Preference number: 4 (lower is better)
Translates to: LATLPEVLSSNPGNHMVALLLQS*WELLLA
Trigger: AGCCAGAAGAAGCTCCCATCAAGACTGAAGCAGAAG...AGCCACCATGTGGTTACCGGGATTTGAACTCAGGACCTCTGGAAGGGTAGCCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS-3UTR GCA 90 bp GAACCCCATTCAGCGGGGCCTGGAGAGATGGCTCAGCGGTTAAGAGCACTGGCTTTCATACCAGGAGCATaGATATTTCTCCAATGGAAC +
Preference number: 4 (lower is better)
Translates to: EPHSAGPGEMAQRLRALAFIPGA*IFLQWN
Trigger: GTTCCATTGGAGAAATATGCATGCTCCTGGTATGAA...AGCCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGGCCCCGCTGAATGGGGTTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS-3UTR TCA 90 bp ACATTTGATTTGTATACCTGTCTACCAGTGACGTTTGATTTGTATACCTGTCTAGGCTGGGGCAGCACGTaGGGCTGTCCCTTCCGGCTC +
Preference number: 4 (lower is better)
Translates to: TFDLYTCLPVTFDLYTCLGWGST*GCPFRL
Trigger: GAGCCGGAAGGGACAGCCTCACGTGCTGCCCCAGCC...TAGACAGGTATACAAATCAAACGTCACTGGTAGACAGGTATACAAATCAAATGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS-3UTR TCA 90 bp CTGCTCTCACGGTTTGGCTATAGAAAACCAAGACTTGTAATATTTGCCTCTTGCGCCGCGGGAAGAATCTaGGCATCGAACGGTGGAAGC +
Preference number: 4 (lower is better)
Translates to: LLSRFGYRKPRLVIFASCAAGRI*ASNGGS
Trigger: GCTTCCACCGTTCGATGCTCAGATTCTTCCCGCGGC...GCAAGAGGCAAATATTACAAGTCTTGGTTTTCTATAGCCAAACCGTGAGAGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS-3UTR TCA 90 bp CTGGCTACCCTTCCAGAGGTCCTGAGTTCAAATCCCGGTAACCACATGGTGGCTCCTCTTCTCCATTTATaGTGTTTACCAGGACTTCTG +
Preference number: 4 (lower is better)
Translates to: LATLPEVLSSNPGNHMVAPLLHL*CLPGLL
Trigger: CAGAAGTCCTGGTAAACATCATAAATGGAGAAGAGG...AGCCACCATGTGGTTACCGGGATTTGAACTCAGGACCTCTGGAAGGGTAGCCAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS-3UTR GCA 90 bp CTGGCTACCCTTCCAGAGGTCCTGAGTTCAAATCCCGGTAACCACATGGTGGCTACATGCCCTTCATTTTaGCATACTGTGTGGTTGTCA +
Preference number: 4 (lower is better)
Translates to: LATLPEVLSSNPGNHMVATCPSF*HTVWLS
Trigger: TGACAACCACACAGTATGGCAAAATGAAGGGCATGT...AGCCACCATGTGGTTACCGGGATTTGAACTCAGGACCTCTGGAAGGGTAGCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS-3UTR CCA 90 bp AGCATCCAGGCAGGCATGCTGCAGGAATTGCTGAAAGCTCTACATCTTCATCTGTCTGGTTCTCCCACTTaGATCTTGAGACTGTTCTAC +
Preference number: 4 (lower is better)
Translates to: SIQAGMLQELLKALHLHLSGSPT*ILRLFY
Trigger: GTAGAACAGTCTCAAGATCCAAGTGGGAGAACCAGA...CAGATGAAGATGTAGAGCTTTCAGCAATTCCTGCAGCATGCCTGCCTGGATGCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS-3UTR GCA 90 bp ACATTTGATTTGTATACCTGTCTACCAGTGACGTTTGATTTGTATACCTGTCTACCAACGACTGCTCTCTaGCTAGCCCCACCTCTTCTC +
Preference number: 4 (lower is better)
Translates to: TFDLYTCLPVTFDLYTCLPTTAL*LAPPLL
Trigger: GAGAAGAGGTGGGGCTAGGCAGAGAGCAGTCGTTGG...TAGACAGGTATACAAATCAAACGTCACTGGTAGACAGGTATACAAATCAAATGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR CAA 72 bp TGTGGAGTTGGCTCTCTCCATTTTTATGTAGGGTTTTaGAGACAGAACTCGGTGTCAGGCTTGTGTGTAAAG +
Preference number: 4 (lower is better)
Translates to: CGVGSLHFYVGF*RQNSVSGLCVK
Trigger: CTTTACACACAAGCCTGACACCGAGTTCTGTCTCAAAAACCCTACATAAAAATGGAGAGAGCCAACTCCACA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS-3UTR CCA 90 bp TTCCCTATTACCCAGTATCTTCAACTCTTAATTAACTCAACCACAGTCTTCCTTCTGGTGTCACTTCCTTaGGCACTACAGTCCTTTGCG +
Preference number: 4 (lower is better)
Translates to: FPITQYLQLLINSTTVFLLVSLP*ALQSFA
Trigger: CGCAAAGGACTGTAGTGCCCAAGGAAGTGACACCAG...AAGGAAGACTGTGGTTGAGTTAATTAAGAGTTGAAGATACTGGGTAATAGGGAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS-3UTR CCA 90 bp GGCTCTCTCCATTTTTATGTAGGGTTTTTGAGACAGAACTCGGTGTCAGGCTTGTTGAACATTTTGTTTTaGACTCTTGGGAGGACTGCT +
Preference number: 4 (lower is better)
Translates to: GSLHFYVGFLRQNSVSGLLNILF*TLGRTA
Trigger: AGCAGTCCTCCCAAGAGTCCAAAACAAAATGTTCAA...CAAGCCTGACACCGAGTTCTGTCTCAAAAACCCTACATAAAAATGGAGAGAGCC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR CAA 72 bp GTTACTTATCTAAGCCTGGGGTCATACAGAGATTCCTaGGACAAAAGGAGGTCACTAGTGGAAAGCTTAAGA +
Preference number: 4 (lower is better)
Translates to: VTYLSLGSYRDS*DKRRSLVESLR
Trigger: TCTTAAGCTTTCCACTAGTGACCTCCTTTTGTCCAAGGAATCTCTGTATGACCCCAGGCTTAGATAAGTAAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS-3UTR CCA 90 bp TTCCCTATTACCCAGTATCTTCAACTCTTAATTAACTCAACCACAGTCTTCCTTCTGAGTCCGTTCCTCTaGTTCTCCCACTTGGATCTT +
Preference number: 4 (lower is better)
Translates to: FPITQYLQLLINSTTVFLLSPFL*FSHLDL
Trigger: AAGATCCAAGTGGGAGAACCAGAGGAACGGACTCAG...AAGGAAGACTGTGGTTGAGTTAATTAAGAGTTGAAGATACTGGGTAATAGGGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS-3UTR CCA 90 bp GGCCAAGCATATACAAACCATCACAATCATCATAGGTTTGCATACATGTGTTGTCAGGCTTCGAATCTCTaGCATGATTTCCTAGTCCAA +
Preference number: 4 (lower is better)
Translates to: GQAYTNHHNHHRFAYMCCQASNL*HDFLVQ
Trigger: TTGGACTAGGAAATCATGCCAGAGATTCGAAGCCTG...ACAACACATGTATGCAAACCTATGATGATTGTGATGGTTTGTATATGCTTGGCC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR CAA 72 bp TTTGATTTGTATACCTGTCTACCAGTGACGTTTGATTaGTATACCTGTCTACCAGTGACGTTTGATTTGTAT +
Preference number: 4 (lower is better)
Translates to: FDLYTCLPVTFD*YTCLPVTFDLY
Trigger: ATACAAATCAAACGTCACTGGTAGACAGGTATACAAATCAAACGTCACTGGTAGACAGGTATACAAATCAAA
36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR CAA 72 bp TTTGATTTGTATACCAGTCTACCAGTGACATTTGATTaGTATACCTGTCTACCAGTGACGTTTGATTTGTAT +
Preference number: 4 (lower is better)
Translates to: FDLYTSLPVTFD*YTCLPVTFDLY
Trigger: ATACAAATCAAACGTCACTGGTAGACAGGTATACAAATCAAATGTCACTGGTAGACTGGTATACAAATCAAA
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
3UTR CAA 72 bp CATTTCCTTTACGGCTTTCTATCAGTAACGTTTGATTaGTATACCAGTCTACCAGTGACATTTGATTTGTAT +
Preference number: 4 (lower is better)
Translates to: HFLYGFLSVTFD*YTSLPVTFDLY
Trigger: ATACAAATCAAATGTCACTGGTAGACTGGTATACAAATCAAACGTTACTGATAGAAAGCCGTAAAGGAAATG
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS CCA 90 bp CTTCCGGCTCTGCTCCGAGCCCGCCACTGGGGACGACAGAGGAGGTaGTGGCGGCGGCAGCATGGCCCAGTACACCCAGTTGTCCCGCGG +
Preference number: 5 (lower is better)
Translates to: LPALLRARHWGRQRR*WRRQHGPVHPVVPR
Trigger: CCGCGGGACAACTGGGTGTACTGGGCCATGCTGCCGCCGCCACCACCTCCTCTGTCGTCCCCAGTGGCGGGCTCGGAGCAGAGCCGGAAG
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS CCA 90 bp CAGCACGTGAGGCTGTCCCTTCCGGCTCTGCTCCGAGCCCGCCACTaGGGACGACAGAGGAGGTGGTGGCGGCGGCAGCATGGCCCAGTA +
Preference number: 5 (lower is better)
Translates to: QHVRLSLPALLRARH*GRQRRWWRRQHGPV
Trigger: TACTGGGCCATGCTGCCGCCGCCACCACCTCCTCTGTCGTCCCCAGTGGCGGGCTCGGAGCAGAGCCGGAAGGGACAGCCTCACGTGCTG
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS TCA 90 bp GGCGGAGCCTGGGCATCGAAAGGAGGCTGCGCCGCGGGAAGAATCTaGGCATCGAACGGTGGAAGCGCTCCGGAGGGAGGCTGGGGCAGC +
Preference number: 5 (lower is better)
Translates to: GGAWASKGGCAAGRI*ASNGGSAPEGGWGS
Trigger: GCTGCCCCAGCCTCCCTCCGGAGCGCTTCCACCGTTCGATGCTCAGATTCTTCCCGCGGCGCAGCCTCCTTTCGATGCCCAGGCTCCGCC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS-3UTR CAA 90 bp CTGGCTACCCTTCCAGAGGTCCTGAGTTCAAATCCCGGTAACCACATGGTGGCTGACATGCCCTTCATTTaGCCATACTGTGTGGTTGTC +
Preference number: 5 (lower is better)
Translates to: LATLPEVLSSNPGNHMVADMPFI*PYCVVV
Trigger: GACAACCACACAGTATGGCAAAATGAAGGGCATGTC...AGCCACCATGTGGTTACCGGGATTTGAACTCAGGACCTCTGGAAGGGTAGCCAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS TCA 90 bp TCCACATTAGCCTTGGATGGAACTTCAGGCTTCGAATCTCTGGCATaGTTTCCTAGTCCAACGACTGCTCTCTGCCTAGCCCCACCTCTT +
Preference number: 5 (lower is better)
Translates to: STLALDGTSGFESLA*FPSPTTALCLAPPL
Trigger: AAGAGGTGGGGCTAGGCAGAGAGCAGTCGTTGGACTAGGAAATCATGCCAGAGATTCGAAGCCTGAAGTTCCATCCAAGGCTAATGTGGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS-3UTR CAA 90 bp GTGGAAAGCTTAAGAACCCCATTCAGCGGGGCCTGGAGAGATGGCTCAGCGGTTTTTGAACATTTTGTTTaGGACTCTTGGGAGGACTGC +
Preference number: 5 (lower is better)
Translates to: VESLRTPFSGAWRDGSAVFEHFV*DSWEDC
Trigger: GCAGTCCTCCCAAGAGTCCAAAACAAAATGTTCAAA...AACCGCTGAGCCATCTCTCCAGGCCCCGCTGAATGGGGTTCTTAAGCTTTCCAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS-3UTR CAA 90 bp ATTCTGGCTGCACACGCTGGGGCTGTGTCCTGTGACTTCGCTGTGGCTTTAAGCAGTTGTTTGAACATTTaGTTTTGGACTCTTGGGAGG +
Preference number: 5 (lower is better)
Translates to: ILAAHAGAVSCDFAVALSSCLNI*FWTLGR
Trigger: CCTCCCAAGAGTCCAAAACAAAATGTTCAAACAACT...GCTTAAAGCCACAGCGAAGTCACAGGACACAGCCCCAGCGTGTGCAGCCAGAAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS CCA 90 bp ACAGTCCTTTGCGCTTTCTCTTCCTTATCAGACTCAGAGTCGCTGTaGATCAAAGCACCTAGAGGGTCCACATTAGCCTTGGATGGAACT +
Preference number: 5 (lower is better)
Translates to: TVLCAFSSLSDSESL*IKAPRGSTLALDGT
Trigger: AGTTCCATCCAAGGCTAATGTGGACCCTCTAGGTGCTTTGATCCACAGCGACTCTGAGTCTGATAAGGAAGAGAAAGCGCAAAGGACTGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS-3UTR CAA 90 bp GCAGAATCGCTTTGTTTCTGGGGGAAACACACCTGTTCCCAAAAGCAGGATATTGGGCACTACAGTCCTTaGCGCTTTCTCTTCCTTATC +
Preference number: 5 (lower is better)
Translates to: AESLCFWGKHTCSQKQDIGHYSP*RFLFLI
Trigger: GATAAGGAAGAGAAAGCGCAAAGGACTGTAGTGCCC...AATATCCTGCTTTTGGGAACAGGTGTGTTTCCCCCAGAAACAAAGCGATTCTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS-3UTR CAA 90 bp CAGTCAACTCTGGAAAAGTCTGAAGATGTTCTACGTCCTGCAACATCAACCTCATGCCATACTGTGTGGTaGTCAACACTTCTCCTCTCT +
Preference number: 5 (lower is better)
Translates to: QSTLEKSEDVLRPATSTSCHTVW*STLLLS
Trigger: AGAGAGGAGAAGTGTTGACAACCACACAGTATGGCA...TGAGGTTGATGTTGCAGGACGTAGAACATCTTCAGACTTTTCCAGAGTTGACTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS TCA 90 bp GCTTATCTTTCTGAGTCCGTTCCTCTGGTTCTCCCACTTGGATCTTaGGACTGTTCTACCAGTTGTTTGAACATTTTGTTTTGGACTCTT +
Preference number: 5 (lower is better)
Translates to: AYLSESVPLVLPLGS*DCSTSCLNILFWTL
Trigger: AAGAGTCCAAAACAAAATGTTCAAACAACTGGTAGAACAGTCTCAAGATCCAAGTGGGAGAACCAGAGGAACGGACTCAGAAAGATAAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS-3UTR CAA 90 bp GGCCAAGCATATACAAACCATCACAATCATCATAGGTTTGCATACATGTGTTGTTCTCCCACTTGGATCTaGAGACTGTTCTACCAGTTG +
Preference number: 5 (lower is better)
Translates to: GQAYTNHHNHHRFAYMCCSPTWI*RLFYQL
Trigger: CAACTGGTAGAACAGTCTCAAGATCCAAGTGGGAGA...ACAACACATGTATGCAAACCTATGATGATTGTGATGGTTTGTATATGCTTGGCC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS-3UTR CAA 90 bp GGCCAAGCATATACAAACCATCACAATCATCATAGGTTTGCATACATGTGTTGTACACTTCTCCTCTCTTaGCCTTTTCCAGTTGTAACT +
Preference number: 5 (lower is better)
Translates to: GQAYTNHHNHHRFAYMCCTLLLS*PFPVVT
Trigger: AGTTACAACTGGAAAAGGCAAAGAGAGGAGAAGTGT...ACAACACATGTATGCAAACCTATGATGATTGTGATGGTTTGTATATGCTTGGCC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS TCA 72 bp GGTGGAAGCGCTCCGGAGGGAGGCTGGGGCAGCACGTaGGGCTGTCCCTTCCGGCTCTGCTCCGAGCCCGCC +
Preference number: 6 (lower is better)
Translates to: GGSAPEGGWGST*GCPFRLCSEPA
Trigger: GGCGGGCTCGGAGCAGAGCCGGAAGGGACAGCCTCACGTGCTGCCCCAGCCTCCCTCCGGAGCGCTTCCACC
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS CCA 72 bp AGGCTGTCCCTTCCGGCTCTGCTCCGAGCCCGCCACTaGGGACGACAGAGGAGGTGGTGGCGGCGGCAGCAT +
Preference number: 6 (lower is better)
Translates to: RLSLPALLRARH*GRQRRWWRRQH
Trigger: ATGCTGCCGCCGCCACCACCTCCTCTGTCGTCCCCAGTGGCGGGCTCGGAGCAGAGCCGGAAGGGACAGCCT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS CCA 72 bp CTCCGAGCCCGCCACTGGGGACGACAGAGGAGGTGGTaGCGGCGGCAGCATGGCCCAGTACACCCAGTTGTC +
Preference number: 6 (lower is better)
Translates to: LRARHWGRQRRW*RRQHGPVHPVV
Trigger: GACAACTGGGTGTACTGGGCCATGCTGCCGCCGCCACCACCTCCTCTGTCGTCCCCAGTGGCGGGCTCGGAG
69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS TCA 72 bp TGGGCATCGAAAGGAGGCTGCGCCGCGGGAAGAATCTaGGCATCGAACGGTGGAAGCGCTCCGGAGGGAGGC +
Preference number: 6 (lower is better)
Translates to: WASKGGCAAGRI*ASNGGSAPEGG
Trigger: GCCTCCCTCCGGAGCGCTTCCACCGTTCGATGCTCAGATTCTTCCCGCGGCGCAGCCTCCTTTCGATGCCCA
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS CAA 72 bp TTGCAAATTCCAGGCCTGCTGGCCGCTGAACTGAGATaGAGCATCGGGCGGAGCCTGGGCATCGAAAGGAGG +
Preference number: 6 (lower is better)
Translates to: LQIPGLLAAELR*SIGRSLGIERR
Trigger: CCTCCTTTCGATGCCCAGGCTCCGCCCGATGCTCAATCTCAGTTCAGCGGCCAGCAGGCCTGGAATTTGCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS CAA 72 bp ATTAGGAGACAATCCCCAGTACCAAGGCGTGGAGGCTaGCAAATTCCAGGCCTGCTGGCCGCTGAACTGAGA +
Preference number: 6 (lower is better)
Translates to: IRRQSPVPRRGG*QIPGLLAAELR
Trigger: TCTCAGTTCAGCGGCCAGCAGGCCTGGAATTTGCAAGCCTCCACGCCTTGGTACTGGGGATTGTCTCCTAAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS CCA 72 bp TGCGCTTTCTCTTCCTTATCAGACTCAGAGTCGCTGTaGATCAAAGCACCTAGAGGGTCCACATTAGCCTTG +
Preference number: 6 (lower is better)
Translates to: CAFSSLSDSESL*IKAPRGSTLAL
Trigger: CAAGGCTAATGTGGACCCTCTAGGTGCTTTGATCCACAGCGACTCTGAGTCTGATAAGGAAGAGAAAGCGCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS CAA 90 bp CGTTCCTCTGGTTCTCCCACTTGGATCTTGAGACTGTTCTACCAGTaGTTTGAACATTTTGTTTTGGACTCTTGGGAGGACTGCTATGAA +
Preference number: 6 (lower is better)
Translates to: RSSGSPTWILRLFYQ*FEHFVLDSWEDCYE
Trigger: TTCATAGCAGTCCTCCCAAGAGTCCAAAACAAAATGTTCAAACAACTGGTAGAACAGTCTCAAGATCCAAGTGGGAGAACCAGAGGAACG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS CAA 72 bp GGTTCTCCCACTTGGATCTTGAGACTGTTCTACCAGTaGTTTGAACATTTTGTTTTGGACTCTTGGGAGGAC +
Preference number: 6 (lower is better)
Translates to: GSPTWILRLFYQ*FEHFVLDSWED
Trigger: GTCCTCCCAAGAGTCCAAAACAAAATGTTCAAACAACTGGTAGAACAGTCTCAAGATCCAAGTGGGAGAACC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2
CDS TCA 72 bp TCTGAGTCCGTTCCTCTGGTTCTCCCACTTGGATCTTaGGACTGTTCTACCAGTTGTTTGAACATTTTGTTT +
Preference number: 6 (lower is better)
Translates to: SESVPLVLPLGS*DCSTSCLNILF
Trigger: AAACAAAATGTTCAAACAACTGGTAGAACAGTCTCAAGATCCAAGTGGGAGAACCAGAGGAACGGACTCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000022586.2