RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NUDT22 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000037349

Ensembl transcript IDs: ENSMUST00000041686.10, ENSMUST00000180765.2

Found 43 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp TCCTCCAGGCAATGGACGACGGTCATGAGCCGGGCTCAGCTCCACTaGTACCTGCTCCTGGGAAAGTCCCCCAAGAGGGCACAGCAGCAG +
Preference number: 5 (lower is better)
Translates to: SSRQWTTVMSRAQLH*YLLLGKSPKRAQQQ
Trigger: CTGCTGCTGTGCCCTCTTGGGGGACTTTCCCAGGAGCAGGTAGCAGTGGAGCTGAGCCCGGCTCATGACCGTCGTCCATTGCCTGGAGGA
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS GCA 90 bp CAGCGCCCTGCTGTCGCAGCCAGGAGGCTGAGCTGGACCAGTTGGTaGCCAGGAAGTCCCGGTAGGAAGTTAGACCCAAGTGCAGGAGCA +
Preference number: 5 (lower is better)
Translates to: QRPAVAARRLSWTSW*PGSPGRKLDPSAGA
Trigger: TGCTCCTGCACTTGGGTCTAACTTCCTACCGGGACTTCCTGGGCACCAACTGGTCCAGCTCAGCCTCCTGGCTGCGACAGCAGGGCGCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS GCA 90 bp GAAGTCGTCAGCTGTGACCAGTGCGGCACCCACCCCCAGTGGGTCTaGCAGATAGGCTTGCTTGTCACCCCAATCTGCAGCGCCCTGCTG +
Preference number: 5 (lower is better)
Translates to: EVVSCDQCGTHPQWV*QIGLLVTPICSALL
Trigger: CAGCAGGGCGCTGCAGATTGGGGTGACAAGCAAGCCTATCTGGCAGACCCACTGGGGGTGGGTGCCGCACTGGTCACAGCTGACGACTTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS CCA 90 bp CTGCAGCGCCCTGCTGTCGCAGCCAGGAGGCTGAGCTGGACCAGTTaGTGCCCAGGAAGTCCCGGTAGGAAGTTAGACCCAAGTGCAGGA +
Preference number: 5 (lower is better)
Translates to: LQRPAVAARRLSWTS*CPGSPGRKLDPSAG
Trigger: TCCTGCACTTGGGTCTAACTTCCTACCGGGACTTCCTGGGCACCAACTGGTCCAGCTCAGCCTCCTGGCTGCGACAGCAGGGCGCTGCAG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS CCA 90 bp CACCCCAATCTGCAGCGCCCTGCTGTCGCAGCCAGGAGGCTGAGCTaGACCAGTTGGTGCCCAGGAAGTCCCGGTAGGAAGTTAGACCCA +
Preference number: 5 (lower is better)
Translates to: HPNLQRPAVAARRLS*TSWCPGSPGRKLDP
Trigger: TGGGTCTAACTTCCTACCGGGACTTCCTGGGCACCAACTGGTCCAGCTCAGCCTCCTGGCTGCGACAGCAGGGCGCTGCAGATTGGGGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS TCA 90 bp CTACCTGCTGAGAGCGGCGCAGGAAGACAAGGAAGTCGTCAGCTGTaGCCAGTGCGGCACCCACCCCCAGTGGGTCTGCCAGATAGGCTT +
Preference number: 5 (lower is better)
Translates to: LPAESGAGRQGSRQL*PVRHPPPVGLPDRL
Trigger: AAGCCTATCTGGCAGACCCACTGGGGGTGGGTGCCGCACTGGTCACAGCTGACGACTTCCTTGTCTTCCTGCGCCGCTCTCAGCAGGTAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS TCA 90 bp TGCCCACCGGGTACATCCACCAGTCCGGGAGCTTCCGCTACCTGCTaGGAGCGGCGCAGGAAGACAAGGAAGTCGTCAGCTGTGACCAGT +
Preference number: 5 (lower is better)
Translates to: CPPGTSTSPGASATC*ERRRKTRKSSAVTS
Trigger: ACTGGTCACAGCTGACGACTTCCTTGTCTTCCTGCGCCGCTCTCAGCAGGTAGCGGAAGCTCCCGGACTGGTGGATGTACCCGGTGGGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS GCA 90 bp CTGAGAGCGGCGCAGGAAGACAAGGAAGTCGTCAGCTGTGACCAGTaGGGCACCCACCCCCAGTGGGTCTGCCAGATAGGCTTGCTTGTC +
Preference number: 5 (lower is better)
Translates to: LRAAQEDKEVVSCDQ*GTHPQWVCQIGLLV
Trigger: GACAAGCAAGCCTATCTGGCAGACCCACTGGGGGTGGGTGCCGCACTGGTCACAGCTGACGACTTCCTTGTCTTCCTGCGCCGCTCTCAG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS CCA 90 bp CCGAGTCTCCCAGATGGCAGTGATGGCCTTGTCTCCTCCAGGCAATaGACGACGGTCATGAGCCGGGCTCAGCTCCACTGCTACCTGCTC +
Preference number: 5 (lower is better)
Translates to: PSLPDGSDGLVSSRQ*TTVMSRAQLHCYLL
Trigger: GAGCAGGTAGCAGTGGAGCTGAGCCCGGCTCATGACCGTCGTCCATTGCCTGGAGGAGACAAGGCCATCACTGCCATCTGGGAGACTCGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS CCA 90 bp GACAAGGAAGTCGTCAGCTGTGACCAGTGCGGCACCCACCCCCAGTaGGTCTGCCAGATAGGCTTGCTTGTCACCCCAATCTGCAGCGCC +
Preference number: 5 (lower is better)
Translates to: DKEVVSCDQCGTHPQ*VCQIGLLVTPICSA
Trigger: GGCGCTGCAGATTGGGGTGACAAGCAAGCCTATCTGGCAGACCCACTGGGGGTGGGTGCCGCACTGGTCACAGCTGACGACTTCCTTGTC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS TCA 90 bp ATGGCAGTGATGGCCTTGTCTCCTCCAGGCAATGGACGACGGTCATaGGCCGGGCTCAGCTCCACTGCTACCTGCTCCTGGGAAAGTCCC +
Preference number: 5 (lower is better)
Translates to: MAVMALSPPGNGRRS*AGLSSTATCSWESP
Trigger: GGGACTTTCCCAGGAGCAGGTAGCAGTGGAGCTGAGCCCGGCTCATGACCGTCGTCCATTGCCTGGAGGAGACAAGGCCATCACTGCCAT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS GCA 90 bp GCGATTGTAGAGGAGGATGGCGCCTTTGGCCGAGGGGCAGAGTTGTaGCCACATCTCCGTCTCCTGCAGTCTCTGTACCCTCTGTGTCTC +
Preference number: 5 (lower is better)
Translates to: AIVEEDGAFGRGAEL*PHLRLLQSLYPLCL
Trigger: GAGACACAGAGGGTACAGAGACTGCAGGAGACGGAGATGTGGGCACAACTCTGCCCCTCGGCCAAAGGCGCCATCCTCCTCTACAATCGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS CCA 90 bp GCTCAGGCGAGCTGGACACCAGTGTGGCTGAGTGAAGGCGGAACTTaGGAGCATCAAAGATCCAAGGTTGGGCCTGTTGCCGAGTCTCCC +
Preference number: 5 (lower is better)
Translates to: AQASWTPVWLSEGGT*EHQRSKVGPVAESP
Trigger: GGGAGACTCGGCAACAGGCCCAACCTTGGATCTTTGATGCTCCCAAGTTCCGCCTTCACTCAGCCACACTGGTGTCCAGCTCGCCTGAGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS CCA 90 bp CTGACTGTAGAGGTGGATGGCGATTGTAGAGGAGGATGGCGCCTTTaGCCGAGGGGCAGAGTTGTGCCCACATCTCCGTCTCCTGCAGTC +
Preference number: 5 (lower is better)
Translates to: LTVEVDGDCRGGWRL*PRGRVVPTSPSPAV
Trigger: GACTGCAGGAGACGGAGATGTGGGCACAACTCTGCCCCTCGGCCAAAGGCGCCATCCTCCTCTACAATCGCCATCCACCTCTACAGTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS TCA 90 bp CAAAGATCCAAGGTTGGGCCTGTTGCCGAGTCTCCCAGATGGCAGTaGTGGCCTTGTCTCCTCCAGGCAATGGACGACGGTCATGAGCCG +
Preference number: 5 (lower is better)
Translates to: QRSKVGPVAESPRWQ*WPCLLQAMDDGHEP
Trigger: CGGCTCATGACCGTCGTCCATTGCCTGGAGGAGACAAGGCCATCACTGCCATCTGGGAGACTCGGCAACAGGCCCAACCTTGGATCTTTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS CCA 90 bp TCCCAACACCTGACTGTAGAGGTGGATGGCGATTGTAGAGGAGGATaGCGCCTTTGGCCGAGGGGCAGAGTTGTGCCCACATCTCCGTCT +
Preference number: 5 (lower is better)
Translates to: SQHLTVEVDGDCRGG*RLWPRGRVVPTSPS
Trigger: AGACGGAGATGTGGGCACAACTCTGCCCCTCGGCCAAAGGCGCCATCCTCCTCTACAATCGCCATCCACCTCTACAGTCAGGTGTTGGGA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS CCA 90 bp AGGAAGTTAGACCCAAGTGCAGGAGCAGCTGTGGCTCAGGCGAGCTaGACACCAGTGTGGCTGAGTGAAGGCGGAACTTGGGAGCATCAA +
Preference number: 5 (lower is better)
Translates to: RKLDPSAGAAVAQAS*TPVWLSEGGTWEHQ
Trigger: TTGATGCTCCCAAGTTCCGCCTTCACTCAGCCACACTGGTGTCCAGCTCGCCTGAGCCACAGCTGCTCCTGCACTTGGGTCTAACTTCCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS CCA 90 bp CTGCCCGCGCTGGTCTCATTGCAAGCGATTCCCAACAACAGTGGCTaGCTCAAGGTGTGCAGTGGCAGGTTCACCTCATCACAGATCTCC +
Preference number: 5 (lower is better)
Translates to: LPALVSLQAIPNNSG*LKVCSGRFTSSQIS
Trigger: GGAGATCTGTGATGAGGTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS CCA 90 bp GGCTCTGCCCGCGCTGGTCTCATTGCAAGCGATTCCCAACAACAGTaGCTGGCTCAAGGTGTGCAGTGGCAGGTTCACCTCATCACAGAT +
Preference number: 5 (lower is better)
Translates to: GSARAGLIASDSQQQ*LAQGVQWQVHLITD
Trigger: ATCTGTGATGAGGTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS GCA 90 bp ACTGGACATAGAACTCTGCACTGGCTCTGCCCGCGCTGGTCTCATTaGAAGCGATTCCCAACAACAGTGGCTGGCTCAAGGTGTGCAGTG +
Preference number: 5 (lower is better)
Translates to: TGHRTLHWLCPRWSH*KRFPTTVAGSRCAV
Trigger: CACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCCAGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS CCA 90 bp TCAAGCTGCACTGGACATAGAACTCTGCACTGGCTCTGCCCGCGCTaGTCTCATTGCAAGCGATTCCCAACAACAGTGGCTGGCTCAAGG +
Preference number: 5 (lower is better)
Translates to: SSCTGHRTLHWLCPR*SHCKRFPTTVAGSR
Trigger: CCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCCAGTGCAGCTTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS GCA 90 bp CCTCTGAAGTCAAGCTGCACTGGACATAGAACTCTGCACTGGCTCTaGCCGCGCTGGTCTCATTGCAAGCGATTCCCAACAACAGTGGCT +
Preference number: 5 (lower is better)
Translates to: PLKSSCTGHRTLHWL*PRWSHCKRFPTTVA
Trigger: AGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCCAGTGCAGCTTGACTTCAGAGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS CAA 90 bp TGTGACCAGTGCGGCACCCACCCCCAGTGGGTCTGCCAGATAGGCTaGCTTGTCACCCCAATCTGCAGCGCCCTGCTGTCGCAGCCAGGA +
Preference number: 6 (lower is better)
Translates to: CDQCGTHPQWVCQIG*LVTPICSALLSQPG
Trigger: TCCTGGCTGCGACAGCAGGGCGCTGCAGATTGGGGTGACAAGCAAGCCTATCTGGCAGACCCACTGGGGGTGGGTGCCGCACTGGTCACA
64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS GCA 72 bp GCGCAGGAAGACAAGGAAGTCGTCAGCTGTGACCAGTaGGGCACCCACCCCCAGTGGGTCTGCCAGATAGGC +
Preference number: 6 (lower is better)
Translates to: AQEDKEVVSCDQ*GTHPQWVCQIG
Trigger: GCCTATCTGGCAGACCCACTGGGGGTGGGTGCCGCACTGGTCACAGCTGACGACTTCCTTGTCTTCCTGCGC
64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS GCA 72 bp CAATGGACGACGGTCATGAGCCGGGCTCAGCTCCACTaGTACCTGCTCCTGGGAAAGTCCCCCAAGAGGGCA +
Preference number: 6 (lower is better)
Translates to: QWTTVMSRAQLH*YLLLGKSPKRA
Trigger: TGCCCTCTTGGGGGACTTTCCCAGGAGCAGGTAGCAGTGGAGCTGAGCCCGGCTCATGACCGTCGTCCATTG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS GCA 72 bp AGCTGTGACCAGTGCGGCACCCACCCCCAGTGGGTCTaGCAGATAGGCTTGCTTGTCACCCCAATCTGCAGC +
Preference number: 6 (lower is better)
Translates to: SCDQCGTHPQWV*QIGLLVTPICS
Trigger: GCTGCAGATTGGGGTGACAAGCAAGCCTATCTGGCAGACCCACTGGGGGTGGGTGCCGCACTGGTCACAGCT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS GCA 72 bp GAGGAGGATGGCGCCTTTGGCCGAGGGGCAGAGTTGTaGCCACATCTCCGTCTCCTGCAGTCTCTGTACCCT +
Preference number: 6 (lower is better)
Translates to: EEDGAFGRGAEL*PHLRLLQSLYP
Trigger: AGGGTACAGAGACTGCAGGAGACGGAGATGTGGGCACAACTCTGCCCCTCGGCCAAAGGCGCCATCCTCCTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS CCA 72 bp CCAGATGGCAGTGATGGCCTTGTCTCCTCCAGGCAATaGACGACGGTCATGAGCCGGGCTCAGCTCCACTGC +
Preference number: 6 (lower is better)
Translates to: PDGSDGLVSSRQ*TTVMSRAQLHC
Trigger: GCAGTGGAGCTGAGCCCGGCTCATGACCGTCGTCCATTGCCTGGAGGAGACAAGGCCATCACTGCCATCTGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS CCA 72 bp GACCCAAGTGCAGGAGCAGCTGTGGCTCAGGCGAGCTaGACACCAGTGTGGCTGAGTGAAGGCGGAACTTGG +
Preference number: 6 (lower is better)
Translates to: DPSAGAAVAQAS*TPVWLSEGGTW
Trigger: CCAAGTTCCGCCTTCACTCAGCCACACTGGTGTCCAGCTCGCCTGAGCCACAGCTGCTCCTGCACTTGGGTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS CCA 72 bp GTCGTCAGCTGTGACCAGTGCGGCACCCACCCCCAGTaGGTCTGCCAGATAGGCTTGCTTGTCACCCCAATC +
Preference number: 6 (lower is better)
Translates to: VVSCDQCGTHPQ*VCQIGLLVTPI
Trigger: GATTGGGGTGACAAGCAAGCCTATCTGGCAGACCCACTGGGGGTGGGTGCCGCACTGGTCACAGCTGACGAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS GCA 72 bp GCTGTCGCAGCCAGGAGGCTGAGCTGGACCAGTTGGTaGCCAGGAAGTCCCGGTAGGAAGTTAGACCCAAGT +
Preference number: 6 (lower is better)
Translates to: AVAARRLSWTSW*PGSPGRKLDPS
Trigger: ACTTGGGTCTAACTTCCTACCGGGACTTCCTGGGCACCAACTGGTCCAGCTCAGCCTCCTGGCTGCGACAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS CCA 72 bp GAGGTGGATGGCGATTGTAGAGGAGGATGGCGCCTTTaGCCGAGGGGCAGAGTTGTGCCCACATCTCCGTCT +
Preference number: 6 (lower is better)
Translates to: EVDGDCRGGWRL*PRGRVVPTSPS
Trigger: AGACGGAGATGTGGGCACAACTCTGCCCCTCGGCCAAAGGCGCCATCCTCCTCTACAATCGCCATCCACCTC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS CAA 72 bp GTAGAGGAGGATGGCGCCTTTGGCCGAGGGGCAGAGTaGTGCCCACATCTCCGTCTCCTGCAGTCTCTGTAC +
Preference number: 6 (lower is better)
Translates to: VEEDGAFGRGAE*CPHLRLLQSLY
Trigger: GTACAGAGACTGCAGGAGACGGAGATGTGGGCACAACTCTGCCCCTCGGCCAAAGGCGCCATCCTCCTCTAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS CCA 72 bp CTGACTGTAGAGGTGGATGGCGATTGTAGAGGAGGATaGCGCCTTTGGCCGAGGGGCAGAGTTGTGCCCACA +
Preference number: 6 (lower is better)
Translates to: LTVEVDGDCRGG*RLWPRGRVVPT
Trigger: TGTGGGCACAACTCTGCCCCTCGGCCAAAGGCGCCATCCTCCTCTACAATCGCCATCCACCTCTACAGTCAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS CAA 90 bp ATGGCGATTGTAGAGGAGGATGGCGCCTTTGGCCGAGGGGCAGAGTaGTGCCCACATCTCCGTCTCCTGCAGTCTCTGTACCCTCTGTGT +
Preference number: 6 (lower is better)
Translates to: MAIVEEDGAFGRGAE*CPHLRLLQSLYPLC
Trigger: ACACAGAGGGTACAGAGACTGCAGGAGACGGAGATGTGGGCACAACTCTGCCCCTCGGCCAAAGGCGCCATCCTCCTCTACAATCGCCAT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS GCA 72 bp AGAACTCTGCACTGGCTCTGCCCGCGCTGGTCTCATTaGAAGCGATTCCCAACAACAGTGGCTGGCTCAAGG +
Preference number: 6 (lower is better)
Translates to: RTLHWLCPRWSH*KRFPTTVAGSR
Trigger: CCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS CCA 72 bp AGCTGGACACCAGTGTGGCTGAGTGAAGGCGGAACTTaGGAGCATCAAAGATCCAAGGTTGGGCCTGTTGCC +
Preference number: 6 (lower is better)
Translates to: SWTPVWLSEGGT*EHQRSKVGPVA
Trigger: GGCAACAGGCCCAACCTTGGATCTTTGATGCTCCCAAGTTCCGCCTTCACTCAGCCACACTGGTGTCCAGCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS TCA 72 bp CGTGGGCCTCAGGTCCCCCACTCAGGTAATAACTCCTaGCCTCCTCTGAAGTCAAGCTGCACTGGACATAGA +
Preference number: 6 (lower is better)
Translates to: RGPQVPHSGNNS*PPLKSSCTGHR
Trigger: TCTATGTCCAGTGCAGCTTGACTTCAGAGGAGGTCAGGAGTTATTACCTGAGTGGGGGACCTGAGGCCCACG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS GCA 72 bp TCAAGCTGCACTGGACATAGAACTCTGCACTGGCTCTaGCCGCGCTGGTCTCATTGCAAGCGATTCCCAACA +
Preference number: 6 (lower is better)
Translates to: SSCTGHRTLHWL*PRWSHCKRFPT
Trigger: TGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCCAGTGCAGCTTGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS CCA 72 bp ACTGGACATAGAACTCTGCACTGGCTCTGCCCGCGCTaGTCTCATTGCAAGCGATTCCCAACAACAGTGGCT +
Preference number: 6 (lower is better)
Translates to: TGHRTLHWLCPR*SHCKRFPTTVA
Trigger: AGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAGCGCGGGCAGAGCCAGTGCAGAGTTCTATGTCCAGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS GCA 72 bp AACTTGGGAGCATCAAAGATCCAAGGTTGGGCCTGTTaGCGAGTCTCCCAGATGGCAGTGATGGCCTTGTCT +
Preference number: 6 (lower is better)
Translates to: NLGASKIQGWAC*RVSQMAVMALS
Trigger: AGACAAGGCCATCACTGCCATCTGGGAGACTCGGCAACAGGCCCAACCTTGGATCTTTGATGCTCCCAAGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS GCA 72 bp CAAGCGATTCCCAACAACAGTGGCTGGCTCAAGGTGTaGAGTGGCAGGTTCACCTCATCACAGATCTCCTGT +
Preference number: 6 (lower is better)
Translates to: QAIPNNSGWLKV*SGRFTSSQISC
Trigger: ACAGGAGATCTGTGATGAGGTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2
CDS CCA 72 bp CTGGTCTCATTGCAAGCGATTCCCAACAACAGTGGCTaGCTCAAGGTGTGCAGTGGCAGGTTCACCTCATCA +
Preference number: 6 (lower is better)
Translates to: LVSLQAIPNNSG*LKVCSGRFTSS
Trigger: TGATGAGGTGAACCTGCCACTGCACACCTTGAGCCAGCCACTGTTGTTGGGAATCGCTTGCAATGAGACCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000041686.10
ENSMUST00000180765.2