RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NUDT2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000028443

Ensembl transcript IDs: ENSMUST00000030154.7

Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp ATCTGCTCTTGGTTGTTAACAAGCCATGACCCGTGCATCCTTCCCTaGATGGAAGGGTGGGTTTATCTTGAAAAACCCTTAAGGATGCAA +
Preference number: 1 (lower is better)
Translates to: ICSWLLTSHDPCILP*MEGWVYLEKPLRMQ
Trigger: TTGCATCCTTAAGGGTTTTTCAAGATAAACCCACCCTTCCATCCAGGGAAGGATGCACGGGTCATGGCTTGTTAACAACCAAGAGCAGAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
3UTR CCA 90 bp TTGTTAACAAGCCATGACCCGTGCATCCTTCCCTGGATGGAAGGGTaGGTTTATCTTGAAAAACCCTTAAGGATGCAATGGAAGCATTTG +
Preference number: 1 (lower is better)
Translates to: LLTSHDPCILPWMEG*VYLEKPLRMQWKHL
Trigger: CAAATGCTTCCATTGCATCCTTAAGGGTTTTTCAAGATAAACCCACCCTTCCATCCAGGGAAGGATGCACGGGTCATGGCTTGTTAACAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
3UTR-3UTR CCA 90 bp GCCGAGTTAATTTTAATTTCACTAACCTATCTGCTCTTGGTTGTTAACAAGCCACCCTGGATGGAAGGGTaGGTTTATCTTGAAAAACCC +
Preference number: 2 (lower is better)
Translates to: AELILISLTYLLLVVNKPPWMEG*VYLEKP
Trigger: GGGTTTTTCAAGATAAACCCACCCTTCCATCCAGGG...TGGCTTGTTAACAACCAAGAGCAGATAGGTTAGTGAAATTAAAATTAACTCGGC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
3UTR CAA 90 bp TTAAAGTCATTATTTTCTATGCTAGGGATTGAATCCAGGGCTTCCTaGCTGTCACCTGAGAGTGCCGAGTTAATTTTAATTTCACTAACC +
Preference number: 2 (lower is better)
Translates to: LKSLFSMLGIESRAS*LSPESAELILISLT
Trigger: GGTTAGTGAAATTAAAATTAACTCGGCACTCTCAGGTGACAGCAAGGAAGCCCTGGATTCAATCCCTAGCATAGAAAATAATGACTTTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
3UTR-3UTR TCA 90 bp GCCGAGTTAATTTTAATTTCACTAACCTATCTGCTCTTGGTTGTTAACAAGCCAAGGGTGGGTTTATCTTaGAAAACCCTTAAGGATGCA +
Preference number: 2 (lower is better)
Translates to: AELILISLTYLLLVVNKPRVGLS*KTLKDA
Trigger: TGCATCCTTAAGGGTTTTTCAAGATAAACCCACCCT...TGGCTTGTTAACAACCAAGAGCAGATAGGTTAGTGAAATTAAAATTAACTCGGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
3UTR TCA 72 bp TCACTAACCTATCTGCTCTTGGTTGTTAACAAGCCATaGCCCGTGCATCCTTCCCTGGATGGAAGGGTGGGT +
Preference number: 3 (lower is better)
Translates to: SLTYLLLVVNKP*PVHPSLDGRVG
Trigger: ACCCACCCTTCCATCCAGGGAAGGATGCACGGGTCATGGCTTGTTAACAACCAAGAGCAGATAGGTTAGTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
3UTR GCA 72 bp CCTATCTGCTCTTGGTTGTTAACAAGCCATGACCCGTaGATCCTTCCCTGGATGGAAGGGTGGGTTTATCTT +
Preference number: 3 (lower is better)
Translates to: PICSWLLTSHDP*ILPWMEGWVYL
Trigger: AAGATAAACCCACCCTTCCATCCAGGGAAGGATGCACGGGTCATGGCTTGTTAACAACCAAGAGCAGATAGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
3UTR CCA 72 bp AGCCATGACCCGTGCATCCTTCCCTGGATGGAAGGGTaGGTTTATCTTGAAAAACCCTTAAGGATGCAATGG +
Preference number: 3 (lower is better)
Translates to: SHDPCILPWMEG*VYLEKPLRMQW
Trigger: CCATTGCATCCTTAAGGGTTTTTCAAGATAAACCCACCCTTCCATCCAGGGAAGGATGCACGGGTCATGGCT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
3UTR TCA 72 bp GTGCATCCTTCCCTGGATGGAAGGGTGGGTTTATCTTaGAAAACCCTTAAGGATGCAATGGAAGCATTTGTT +
Preference number: 3 (lower is better)
Translates to: VHPSLDGRVGLS*KTLKDAMEAFV
Trigger: AACAAATGCTTCCATTGCATCCTTAAGGGTTTTTCAAGATAAACCCACCCTTCCATCCAGGGAAGGATGCAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
CDS-3UTR TCA 90 bp TGGTTGTTAACAAGCCATGACCCGTGCATCCTTCCCTGGATGGAAGGGTGGGTTTTCATCTCCTTGAACTaGGCCAACTGGCAGGCCTCC +
Preference number: 4 (lower is better)
Translates to: WLLTSHDPCILPWMEGWVFISLN*ANWQAS
Trigger: GGAGGCCTGCCAGTTGGCTCAGTTCAAGGAGATGAA...AACCCACCCTTCCATCCAGGGAAGGATGCACGGGTCATGGCTTGTTAACAACCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
CDS-3UTR TCA 90 bp TCTTGGTTGTTAACAAGCCATGACCCGTGCATCCTTCCCTGGATGGAAGGGTGGTTGCCTTCATCTCCTTaGACTGAGCCAACTGGCAGG +
Preference number: 4 (lower is better)
Translates to: SWLLTSHDPCILPWMEGWLPSSP*TEPTGR
Trigger: CCTGCCAGTTGGCTCAGTTCAAGGAGATGAAGGCAA...CCACCCTTCCATCCAGGGAAGGATGCACGGGTCATGGCTTGTTAACAACCAAGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
CDS-3UTR CCA 90 bp ATGACCCGTGCATCCTTCCCTGGATGGAAGGGTGGGTTTATCTTGAAAAACCCTTCTCCTGGGTCCACATaGCCTTTGGGAGGAGTCCAG +
Preference number: 4 (lower is better)
Translates to: MTRASFPGWKGGFILKNPSPGST*PLGGVQ
Trigger: CTGGACTCCTCCCAAAGGCCATGTGGACCCAGGAGA...AGGGTTTTTCAAGATAAACCCACCCTTCCATCCAGGGAAGGATGCACGGGTCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
CDS-3UTR TCA 90 bp CAAGCCATGACCCGTGCATCCTTCCCTGGATGGAAGGGTGGGTTTATCTTGAAAGTGATGAATGCCGTCTaGTGCCTGCAGCAGCAGAAA +
Preference number: 4 (lower is better)
Translates to: QAMTRASFPGWKGGFILKVMNAV*CLQQQK
Trigger: TTTCTGCTGCTGCAGGCATCAGACGGCATTCATCAC...TTTCAAGATAAACCCACCCTTCCATCCAGGGAAGGATGCACGGGTCATGGCTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
CDS-3UTR GCA 90 bp CAAGCCATGACCCGTGCATCCTTCCCTGGATGGAAGGGTGGGTTTATCTTGAAAGAGTCCAGTGATGAATaGCGTCTGATGCCTGCAGCA +
Preference number: 4 (lower is better)
Translates to: QAMTRASFPGWKGGFILKESSDE*RLMPAA
Trigger: TGCTGCAGGCATCAGACGGCATTCATCACTGGACTC...TTTCAAGATAAACCCACCCTTCCATCCAGGGAAGGATGCACGGGTCATGGCTTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
CDS-3UTR CCA 90 bp TGGTTGTTAACAAGCCATGACCCGTGCATCCTTCCCTGGATGGAAGGGTGGGTTGTGGAGCAGAGAAACTaGTGTCCTTCTTGGAGTGTT +
Preference number: 4 (lower is better)
Translates to: WLLTSHDPCILPWMEGWVVEQRN*CPSWSV
Trigger: AACACTCCAAGAAGGACACCAGTTTCTCTGCTCCAC...AACCCACCCTTCCATCCAGGGAAGGATGCACGGGTCATGGCTTGTTAACAACCA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
CDS-3UTR GCA 90 bp ATGACCCGTGCATCCTTCCCTGGATGGAAGGGTGGGTTTATCTTGAAAAACCCTGTTGGCTTGCTTCTATaGCTGTTTCCTCCCGAGTCT +
Preference number: 4 (lower is better)
Translates to: MTRASFPGWKGGFILKNPVGLLL*LFPPES
Trigger: AGACTCGGGAGGAAACAGGCATAGAAGCAAGCCAAC...AGGGTTTTTCAAGATAAACCCACCCTTCCATCCAGGGAAGGATGCACGGGTCAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
CDS-3UTR GCA 90 bp TGGTTGTTAACAAGCCATGACCCGTGCATCCTTCCCTGGATGGAAGGGTGGGTTGTAGTCTTTCACTTCTaGCAGCCAGTAAATGACCGT +
Preference number: 4 (lower is better)
Translates to: WLLTSHDPCILPWMEGWVVVFHF*QPVNDR
Trigger: ACGGTCATTTACTGGCTGGCAGAAGTGAAAGACTAC...AACCCACCCTTCCATCCAGGGAAGGATGCACGGGTCATGGCTTGTTAACAACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
CDS-3UTR GCA 90 bp TGGTTGTTAACAAGCCATGACCCGTGCATCCTTCCCTGGATGGAAGGGTGGGTTTCCTTCTTGGAGTGTTaGCTTCATCTCCTTGAACTG +
Preference number: 4 (lower is better)
Translates to: WLLTSHDPCILPWMEGWVSFLEC*LHLLEL
Trigger: CAGTTCAAGGAGATGAAGGCAACACTCCAAGAAGGA...AACCCACCCTTCCATCCAGGGAAGGATGCACGGGTCATGGCTTGTTAACAACCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
CDS-3UTR CCA 90 bp TCTTGGTTGTTAACAAGCCATGACCCGTGCATCCTTCCCTGGATGGAAGGGTGGTCAATGATGGTCAGTTaGCTTGCTTCTATGCCTGTT +
Preference number: 4 (lower is better)
Translates to: SWLLTSHDPCILPWMEGWSMMVS*LASMPV
Trigger: AACAGGCATAGAAGCAAGCCAACTGACCATCATTGA...CCACCCTTCCATCCAGGGAAGGATGCACGGGTCATGGCTTGTTAACAACCAAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
CDS-3UTR GCA 90 bp ATGACCCGTGCATCCTTCCCTGGATGGAAGGGTGGGTTTATCTTGAAAAACCCTATGCCGTCTGATGCCTaGAGCAGCAGAAATTCAATT +
Preference number: 4 (lower is better)
Translates to: MTRASFPGWKGGFILKNPMPSDA*SSRNSI
Trigger: AATTGAATTTCTGCTGCTGCAGGCATCAGACGGCAT...AGGGTTTTTCAAGATAAACCCACCCTTCCATCCAGGGAAGGATGCACGGGTCAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
CDS-3UTR TCA 90 bp GCCGAGTTAATTTTAATTTCACTAACCTATCTGCTCTTGGTTGTTAACAAGCCAGGTGTCTTCGGAAGATaGTCAAGCCACATGCCCTCA +
Preference number: 4 (lower is better)
Translates to: AELILISLTYLLLVVNKPGVFGR*SSHMPS
Trigger: TGAGGGCATGTGGCTTGATCATCTTCCGAAGACACC...TGGCTTGTTAACAACCAAGAGCAGATAGGTTAGTGAAATTAAAATTAACTCGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
CDS-3UTR CCA 90 bp GCCGAGTTAATTTTAATTTCACTAACCTATCTGCTCTTGGTTGTTAACAAGCCAGGTCCACATGGCCTTTaGGAGGAGTCCAGTGATGAA +
Preference number: 4 (lower is better)
Translates to: AELILISLTYLLLVVNKPGPHGL*EESSDE
Trigger: TTCATCACTGGACTCCTCCCAAAGGCCATGTGGACC...TGGCTTGTTAACAACCAAGAGCAGATAGGTTAGTGAAATTAAAATTAACTCGGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
CDS-3UTR GCA 90 bp GCCGAGTTAATTTTAATTTCACTAACCTATCTGCTCTTGGTTGTTAACAAGCCAGATGGTCAGTTGGCTTaGTTCTATGCCTGTTTCCTC +
Preference number: 4 (lower is better)
Translates to: AELILISLTYLLLVVNKPDGQLA*FYACFL
Trigger: GAGGAAACAGGCATAGAAGCAAGCCAACTGACCATC...TGGCTTGTTAACAACCAAGAGCAGATAGGTTAGTGAAATTAAAATTAACTCGGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
3UTR CAA 72 bp TTATTTTCTATGCTAGGGATTGAATCCAGGGCTTCCTaGCTGTCACCTGAGAGTGCCGAGTTAATTTTAATT +
Preference number: 4 (lower is better)
Translates to: LFSMLGIESRAS*LSPESAELILI
Trigger: AATTAAAATTAACTCGGCACTCTCAGGTGACAGCAAGGAAGCCCTGGATTCAATCCCTAGCATAGAAAATAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
CDS-3UTR CAA 90 bp CAAGCCATGACCCGTGCATCCTTCCCTGGATGGAAGGGTGGGTTTATCTTGAAACAGCCAGCGGTAGGCTaGATGCTCCTGGGAGAGGCG +
Preference number: 5 (lower is better)
Translates to: QAMTRASFPGWKGGFILKQPAVG*MLLGEA
Trigger: CGCCTCTCCCAGGAGCATCAAGCCTACCGCTGGCTG...TTTCAAGATAAACCCACCCTTCCATCCAGGGAAGGATGCACGGGTCATGGCTTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
CDS GCA 90 bp TCAGGCCGGTGTGGAGCAGAGAAACTGGTGTCCTTCTTGGAGTGTTaGCTTCATCTCCTTGAACTGAGCCAACTGGCAGGCCTCCTCCAG +
Preference number: 5 (lower is better)
Translates to: SGRCGAEKLVSFLEC*LHLLELSQLAGLLQ
Trigger: CTGGAGGAGGCCTGCCAGTTGGCTCAGTTCAAGGAGATGAAGGCAACACTCCAAGAAGGACACCAGTTTCTCTGCTCCACACCGGCCTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
CDS GCA 90 bp GTAATTGAGCTCCCTTCTGAACCCCTCAATGATGGTCAGTTGGCTTaGTTCTATGCCTGTTTCCTCCCGAGTCTCTCGCAGGGCTGTTTC +
Preference number: 5 (lower is better)
Translates to: VIELPSEPLNDGQLA*FYACFLPSLSQGCF
Trigger: GAAACAGCCCTGCGAGAGACTCGGGAGGAAACAGGCATAGAAGCAAGCCAACTGACCATCATTGAGGGGTTCAGAAGGGAGCTCAATTAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
CDS GCA 90 bp TCTCTCCTGGGTCCACATGGCCTTTGGGAGGAGTCCAGTGATGAATaGCGTCTGATGCCTGCAGCAGCAGAAATTCAATTGTACTGTTGT +
Preference number: 5 (lower is better)
Translates to: SLLGPHGLWEESSDE*RLMPAAAEIQLYCC
Trigger: ACAACAGTACAATTGAATTTCTGCTGCTGCAGGCATCAGACGGCATTCATCACTGGACTCCTCCCAAAGGCCATGTGGACCCAGGAGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
CDS GCA 90 bp ATGCTCCTGGGAGAGGCGGATCTCTACATTGTAGTCTTTCACTTCTaGCAGCCAGTAAATGACCGTTTTAGGCTTCTGCCTGGCCACGTA +
Preference number: 5 (lower is better)
Translates to: MLLGEADLYIVVFHF*QPVNDRFRLLPGHV
Trigger: TACGTGGCCAGGCAGAAGCCTAAAACGGTCATTTACTGGCTGGCAGAAGTGAAAGACTACAATGTAGAGATCCGCCTCTCCCAGGAGCAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
CDS-3UTR CAA 90 bp TCTTGGTTGTTAACAAGCCATGACCCGTGCATCCTTCCCTGGATGGAAGGGTGGCTCAATGATGGTCAGTaGGCTTGCTTCTATGCCTGT +
Preference number: 5 (lower is better)
Translates to: SWLLTSHDPCILPWMEGWLNDGQ*ACFYAC
Trigger: ACAGGCATAGAAGCAAGCCAACTGACCATCATTGAG...CCACCCTTCCATCCAGGGAAGGATGCACGGGTCATGGCTTGTTAACAACCAAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
CDS-3UTR CAA 90 bp CAAGCCATGACCCGTGCATCCTTCCCTGGATGGAAGGGTGGGTTTATCTTGAAAGTACTGTTGTCCATCTaGGGAATAAGGTGTCTTCGG +
Preference number: 5 (lower is better)
Translates to: QAMTRASFPGWKGGFILKVLLSI*GIRCLR
Trigger: CCGAAGACACCTTATTCCCAAGATGGACAACAGTAC...TTTCAAGATAAACCCACCCTTCCATCCAGGGAAGGATGCACGGGTCATGGCTTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
CDS-3UTR CAA 90 bp ATGACCCGTGCATCCTTCCCTGGATGGAAGGGTGGGTTTATCTTGAAAAACCCTGCAGCAGAAATTCAATaGTACTGTTGTCCATCTTGG +
Preference number: 5 (lower is better)
Translates to: MTRASFPGWKGGFILKNPAAEIQ*YCCPSW
Trigger: CCAAGATGGACAACAGTACAATTGAATTTCTGCTGC...AGGGTTTTTCAAGATAAACCCACCCTTCCATCCAGGGAAGGATGCACGGGTCAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
CDS-3UTR CAA 90 bp CAAGCCATGACCCGTGCATCCTTCCCTGGATGGAAGGGTGGGTTTATCTTGAAAAATTCAATTGTACTGTaGTCCATCTTGGGAATAAGG +
Preference number: 5 (lower is better)
Translates to: QAMTRASFPGWKGGFILKNSIVL*SILGIR
Trigger: CCTTATTCCCAAGATGGACAACAGTACAATTGAATT...TTTCAAGATAAACCCACCCTTCCATCCAGGGAAGGATGCACGGGTCATGGCTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
CDS-3UTR CAA 90 bp GCCGAGTTAATTTTAATTTCACTAACCTATCTGCTCTTGGTTGTTAACAAGCCAAAACTGGTGTCCTTCTaGGAGTGTTGCCTTCATCTC +
Preference number: 5 (lower is better)
Translates to: AELILISLTYLLLVVNKPKLVSF*ECCLHL
Trigger: GAGATGAAGGCAACACTCCAAGAAGGACACCAGTTT...TGGCTTGTTAACAACCAAGAGCAGATAGGTTAGTGAAATTAAAATTAACTCGGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
CDS TCA 72 bp ACTGGTGTCCTTCTTGGAGTGTTGCCTTCATCTCCTTaGACTGAGCCAACTGGCAGGCCTCCTCCAGCCCCA +
Preference number: 6 (lower is better)
Translates to: TGVLLGVLPSSP*TEPTGRPPPAP
Trigger: TGGGGCTGGAGGAGGCCTGCCAGTTGGCTCAGTTCAAGGAGATGAAGGCAACACTCCAAGAAGGACACCAGT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
CDS CAA 90 bp GGCCACGTAATTGAGCTCCCTTCTGAACCCCTCAATGATGGTCAGTaGGCTTGCTTCTATGCCTGTTTCCTCCCGAGTCTCTCGCAGGGC +
Preference number: 6 (lower is better)
Translates to: GHVIELPSEPLNDGQ*ACFYACFLPSLSQG
Trigger: GCCCTGCGAGAGACTCGGGAGGAAACAGGCATAGAAGCAAGCCAACTGACCATCATTGAGGGGTTCAGAAGGGAGCTCAATTACGTGGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
CDS GCA 72 bp CTCCCTTCTGAACCCCTCAATGATGGTCAGTTGGCTTaGTTCTATGCCTGTTTCCTCCCGAGTCTCTCGCAG +
Preference number: 6 (lower is better)
Translates to: LPSEPLNDGQLA*FYACFLPSLSQ
Trigger: CTGCGAGAGACTCGGGAGGAAACAGGCATAGAAGCAAGCCAACTGACCATCATTGAGGGGTTCAGAAGGGAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
CDS GCA 72 bp GGTCCACATGGCCTTTGGGAGGAGTCCAGTGATGAATaGCGTCTGATGCCTGCAGCAGCAGAAATTCAATTG +
Preference number: 6 (lower is better)
Translates to: GPHGLWEESSDE*RLMPAAAEIQL
Trigger: CAATTGAATTTCTGCTGCTGCAGGCATCAGACGGCATTCATCACTGGACTCCTCCCAAAGGCCATGTGGACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
CDS CAA 72 bp TCAGGCCGGTGTGGAGCAGAGAAACTGGTGTCCTTCTaGGAGTGTTGCCTTCATCTCCTTGAACTGAGCCAA +
Preference number: 6 (lower is better)
Translates to: SGRCGAEKLVSF*ECCLHLLELSQ
Trigger: TTGGCTCAGTTCAAGGAGATGAAGGCAACACTCCAAGAAGGACACCAGTTTCTCTGCTCCACACCGGCCTGA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7
CDS CCA 72 bp TTGAGCTCCCTTCTGAACCCCTCAATGATGGTCAGTTaGCTTGCTTCTATGCCTGTTTCCTCCCGAGTCTCT +
Preference number: 6 (lower is better)
Translates to: LSSLLNPSMMVS*LASMPVSSRVS
Trigger: AGAGACTCGGGAGGAAACAGGCATAGAAGCAAGCCAACTGACCATCATTGAGGGGTTCAGAAGGGAGCTCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000030154.7