Pregenerated sensors for NUDT16 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032565Ensembl transcript IDs: ENSMUST00000035179.9, ENSMUST00000185533.2, ENSMUST00000186925.2
Found 39 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | GCCCCAGGTAACACAGGACAATTCTCAGAAAGAAGCCATCTCCTTTaGTTCCCTAACAGGCATGGGTTGGGCTGGACACAGGACAGCAGC | + |
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Preference number: 1 (lower is better) Translates to: APGNTGQFSERSHLL*FPNRHGLGWTQDSS Trigger: GCTGCTGTCCTGTGTCCAGCCCAACCCATGCCTGTTAGGGAAGCAAAGGAGATGGCTTCTTTCTGAGAATTGTCCTGTGTTACCTGGGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035179.9 |
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| 3UTR TCA 90 bp | AATGGGAGCTCAAAGATGAACACGCAGGAAGACAGGTATCAGGACTaGGGTCTCAGGCCTCCTAAGAAGCCCTTGACAATTCCAACTCTC | + |
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Preference number: 1 (lower is better) Translates to: NGSSKMNTQEDRYQD*GLRPPKKPLTIPTL Trigger: GAGAGTTGGAATTGTCAAGGGCTTCTTAGGAGGCCTGAGACCTCAGTCCTGATACCTGTCTTCCTGCGTGTTCATCTTTGAGCTCCCATT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035179.9 |
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| 3UTR TCA 90 bp | GGAGTGGGATGTGCCAAATGCCACATCATGGTTAAACTGGGCAGATaGCAGTGTGTCAGGCTGTGTGTGACCACGAACTACACATATACA | + |
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Preference number: 1 (lower is better) Translates to: GVGCAKCHIMVKLGR*QCVRLCVTTNYTYT Trigger: TGTATATGTGTAGTTCGTGGTCACACACAGCCTGACACACTGTCATCTGCCCAGTTTAACCATGATGTGGCATTTGGCACATCCCACTCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035179.9 |
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| 3UTR CCA 90 bp | AGGTGTTCCGTTGAAAACAGTGCATATCCTTCCCTGTTGCTAATCTaGCACCACCTACAATCCTTTATACCCCAAAGAGAGACCACTTGT | + |
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Preference number: 1 (lower is better) Translates to: RCSVENSAYPSLLLI*HHLQSFIPQRETTC Trigger: ACAAGTGGTCTCTCTTTGGGGTATAAAGGATTGTAGGTGGTGCCAGATTAGCAACAGGGAAGGATATGCACTGTTTTCAACGGAACACCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035179.9 |
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| 3UTR TCA 90 bp | TCTGTCACCATACCTAGCACTGAGCAAGTATTAACCTGTACCTTTTaGAAAAGCTCTGGAACTTGGAGGCCCAGATATCAGCCTACTCTT | + |
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Preference number: 1 (lower is better) Translates to: SVTIPSTEQVLTCTF*KSSGTWRPRYQPTL Trigger: AAGAGTAGGCTGATATCTGGGCCTCCAAGTTCCAGAGCTTTTTCAAAAGGTACAGGTTAATACTTGCTCAGTGCTAGGTATGGTGACAGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035179.9 |
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| 3UTR-3UTR CCA 90 bp | ACAGCGGATGGGGAAGAAACCCTCCCATTTACCCGGAAGGAGTGGGATGTGCCACATACCAAGGCCCTCTaGGTTCCAGGGGTCCATGCT | + |
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Preference number: 2 (lower is better) Translates to: TADGEETLPFTRKEWDVPHTKAL*VPGVHA Trigger: AGCATGGACCCCTGGAACCCAGAGGGCCTTGGTATG...TGGCACATCCCACTCCTTCCGGGTAAATGGGAGGGTTTCTTCCCCATCCGCTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035179.9 |
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| 3UTR-3UTR GCA 90 bp | CAGGCATGGGTTGGGCTGGACACAGGACAGCAGCCTTACAGCGGATGGGGAAGAGGAAGGAGTGGGATGTaGCAAATGCCACATCATGGT | + |
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Preference number: 2 (lower is better) Translates to: QAWVGLDTGQQPYSGWGRGRSGM*QMPHHG Trigger: ACCATGATGTGGCATTTGGCACATCCCACTCCTTCC...TCTTCCCCATCCGCTGTAAGGCTGCTGTCCTGTGTCCAGCCCAACCCATGCCTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035179.9 |
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| 3UTR-3UTR CCA 90 bp | ACAGCGGATGGGGAAGAAACCCTCCCATTTACCCGGAAGGAGTGGGATGTGCCATCCCTGTTGCTAATCTaGCACCACCTACAATCCTTT | + |
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Preference number: 2 (lower is better) Translates to: TADGEETLPFTRKEWDVPSLLLI*HHLQSF Trigger: AAAGGATTGTAGGTGGTGCCAGATTAGCAACAGGGA...TGGCACATCCCACTCCTTCCGGGTAAATGGGAGGGTTTCTTCCCCATCCGCTGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035179.9 |
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| 3UTR CAA 90 bp | CACCAGACAAGGTGTTCCGTTGAAAACAGTGCATATCCTTCCCTGTaGCTAATCTGGCACCACCTACAATCCTTTATACCCCAAAGAGAG | + |
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Preference number: 2 (lower is better) Translates to: HQTRCSVENSAYPSL*LIWHHLQSFIPQRE Trigger: CTCTCTTTGGGGTATAAAGGATTGTAGGTGGTGCCAGATTAGCAACAGGGAAGGATATGCACTGTTTTCAACGGAACACCTTGTCTGGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035179.9 |
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| 3UTR-3UTR TCA 90 bp | CCTTTTGAAAAAGCTCTGGAACTTGGAGGCCCAGATATCAGCCTACTCTTCCAGCTCCTAAGAAGCCCTTaGCAATTCCAACTCTCAGTT | + |
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Preference number: 2 (lower is better) Translates to: PFEKALELGGPDISLLFQLLRSP*QFQLSV Trigger: AACTGAGAGTTGGAATTGTCAAGGGCTTCTTAGGAG...CTGGAAGAGTAGGCTGATATCTGGGCCTCCAAGTTCCAGAGCTTTTTCAAAAGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035179.9 |
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| 3UTR-3UTR CCA 90 bp | TTTCTGAAACCCACTGCTCTGCTCAAGCCCCAGGTAACACAGGACAATTCTCAGACACATATACATACCTaGAGCTTCCAGGCTGTTTGT | + |
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Preference number: 2 (lower is better) Translates to: FLKPTALLKPQVTQDNSQTHIHT*SFQAVC Trigger: ACAAACAGCCTGGAAGCTCCAGGTATGTATATGTGT...CTGAGAATTGTCCTGTGTTACCTGGGGCTTGAGCAGAGCAGTGGGTTTCAGAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035179.9 |
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| 3UTR-3UTR CCA 90 bp | CCTTTTGAAAAAGCTCTGGAACTTGGAGGCCCAGATATCAGCCTACTCTTCCAGACATCATGGTTAAACTaGGCAGATGACAGTGTGTCA | + |
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Preference number: 2 (lower is better) Translates to: PFEKALELGGPDISLLFQTSWLN*ADDSVS Trigger: TGACACACTGTCATCTGCCCAGTTTAACCATGATGT...CTGGAAGAGTAGGCTGATATCTGGGCCTCCAAGTTCCAGAGCTTTTTCAAAAGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035179.9 |
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| 3UTR-3UTR CCA 90 bp | TACCTTTTGAAAAAGCTCTGGAACTTGGAGGCCCAGATATCAGCCTACTCTTCCCCAAATGCCACATCATaGTTAAACTGGGCAGATGAC | + |
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Preference number: 2 (lower is better) Translates to: YLLKKLWNLEAQISAYSSPNATS*LNWADD Trigger: GTCATCTGCCCAGTTTAACCATGATGTGGCATTTGG...GGAAGAGTAGGCTGATATCTGGGCCTCCAAGTTCCAGAGCTTTTTCAAAAGGTA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000035179.9 |
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| 3UTR-3UTR CCA 90 bp | CTTTTGAAAAAGCTCTGGAACTTGGAGGCCCAGATATCAGCCTACTCTTCCAGAGCTAGACAGAGACAATaGGAGCTCAAAGATGAACAC | + |
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Preference number: 2 (lower is better) Translates to: LLKKLWNLEAQISAYSSRARQRQ*ELKDEH Trigger: GTGTTCATCTTTGAGCTCCCATTGTCTCTGTCTAGC...TCTGGAAGAGTAGGCTGATATCTGGGCCTCCAAGTTCCAGAGCTTTTTCAAAAG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035179.9 |
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| 3UTR-3UTR CAA 90 bp | GCCTTACAGCGGATGGGGAAGAAACCCTCCCATTTACCCGGAAGGAGTGGGATGCCAAAGAGAGACCACTaGTCCTTCCCTCCCTCATAC | + |
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Preference number: 3 (lower is better) Translates to: ALQRMGKKPSHLPGRSGMPKRDH*SFPPSY Trigger: GTATGAGGGAGGGAAGGACAAGTGGTCTCTCTTTGG...CATCCCACTCCTTCCGGGTAAATGGGAGGGTTTCTTCCCCATCCGCTGTAAGGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035179.9 |
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| 3UTR TCA 72 bp | ATCAGGACTGAGGTCTCAGGCCTCCTAAGAAGCCCTTaGCAATTCCAACTCTCAGTTAGAGCGCAGGGCTGG | + |
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Preference number: 3 (lower is better) Translates to: IRTEVSGLLRSP*QFQLSVRAQGW Trigger: CCAGCCCTGCGCTCTAACTGAGAGTTGGAATTGTCAAGGGCTTCTTAGGAGGCCTGAGACCTCAGTCCTGAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035179.9 |
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| 3UTR-3UTR CAA 90 bp | CCTTTTGAAAAAGCTCTGGAACTTGGAGGCCCAGATATCAGCCTACTCTTCCAGCCTAACAGGCATGGGTaGGGCTGGACACAGGACAGC | + |
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Preference number: 3 (lower is better) Translates to: PFEKALELGGPDISLLFQPNRHG*GWTQDS Trigger: GCTGTCCTGTGTCCAGCCCAACCCATGCCTGTTAGG...CTGGAAGAGTAGGCTGATATCTGGGCCTCCAAGTTCCAGAGCTTTTTCAAAAGG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035179.9 |
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| 3UTR GCA 72 bp | AATAAAGGGAAAACTCCAACACAAGGAGGGAAACTATaGCCAAGGCCCTCTGGGTTCCAGGGGTCCATGCTG | + |
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Preference number: 3 (lower is better) Translates to: NKGKTPTQGGKL*PRPSGFQGSML Trigger: CAGCATGGACCCCTGGAACCCAGAGGGCCTTGGGCATAGTTTCCCTCCTTGTGTTGGAGTTTTCCCTTTATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000185533.2 |
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| 3UTR CCA 72 bp | ACCCGGAAGGAGTGGGATGTGCCAAATGCCACATCATaGTTAAACTGGGCAGATGACAGTGTGTCAGGCTGT | + |
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Preference number: 3 (lower is better) Translates to: TRKEWDVPNATS*LNWADDSVSGC Trigger: ACAGCCTGACACACTGTCATCTGCCCAGTTTAACCATGATGTGGCATTTGGCACATCCCACTCCTTCCGGGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035179.9 |
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| 3UTR TCA 72 bp | TCAAAGATGAACACGCAGGAAGACAGGTATCAGGACTaGGGTCTCAGGCCTCCTAAGAAGCCCTTGACAATT | + |
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Preference number: 3 (lower is better) Translates to: SKMNTQEDRYQD*GLRPPKKPLTI Trigger: AATTGTCAAGGGCTTCTTAGGAGGCCTGAGACCTCAGTCCTGATACCTGTCTTCCTGCGTGTTCATCTTTGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035179.9 |
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| 3UTR-3UTR CAA 90 bp | TACCTTTTGAAAAAGCTCTGGAACTTGGAGGCCCAGATATCAGCCTACTCTTCCGCATATCCTTCCCTGTaGCTAATCTGGCACCACCTA | + |
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Preference number: 3 (lower is better) Translates to: YLLKKLWNLEAQISAYSSAYPSL*LIWHHL Trigger: TAGGTGGTGCCAGATTAGCAACAGGGAAGGATATGC...GGAAGAGTAGGCTGATATCTGGGCCTCCAAGTTCCAGAGCTTTTTCAAAAGGTA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035179.9 |
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| 3UTR CCA 72 bp | GTTGAAAACAGTGCATATCCTTCCCTGTTGCTAATCTaGCACCACCTACAATCCTTTATACCCCAAAGAGAG | + |
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Preference number: 3 (lower is better) Translates to: VENSAYPSLLLI*HHLQSFIPQRE Trigger: CTCTCTTTGGGGTATAAAGGATTGTAGGTGGTGCCAGATTAGCAACAGGGAAGGATATGCACTGTTTTCAAC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035179.9 |
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| 3UTR CCA 72 bp | ACCACAAATTTATACATCATGCAGATAAGTTTGACGTaGCAGAGTAAAGGGTTCCCACGGACACCATGTGAC | + |
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Preference number: 3 (lower is better) Translates to: TTNLYIMQISLT*QSKGFPRTPCD Trigger: GTCACATGGTGTCCGTGGGAACCCTTTACTCTGCCACGTCAAACTTATCTGCATGATGTATAAATTTGTGGT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035179.9 |
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| 3UTR TCA 72 bp | ATACCTAGCACTGAGCAAGTATTAACCTGTACCTTTTaGAAAAGCTCTGGAACTTGGAGGCCCAGATATCAG | + |
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Preference number: 3 (lower is better) Translates to: IPSTEQVLTCTF*KSSGTWRPRYQ Trigger: CTGATATCTGGGCCTCCAAGTTCCAGAGCTTTTTCAAAAGGTACAGGTTAATACTTGCTCAGTGCTAGGTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035179.9 |
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| CDS-3UTR TCA 90 bp | TGGGTTGGGCTGGACACAGGACAGCAGCCTTACAGCGGATGGGGAAGAAACCCTCCATGGTCCTTGGCTTaGGGTGCCCTGGCTTCCACA | + |
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Preference number: 4 (lower is better) Translates to: WVGLDTGQQPYSGWGRNPPWSLA*GALAST Trigger: TGTGGAAGCCAGGGCACCTCAAGCCAAGGACCATGG...AGGGTTTCTTCCCCATCCGCTGTAAGGCTGCTGTCCTGTGTCCAGCCCAACCCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035179.9 |
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| CDS-3UTR CCA 90 bp | GGCATGGGTTGGGCTGGACACAGGACAGCAGCCTTACAGCGGATGGGGAAGAAATGGCTTGAGGTGCCCTaGCTTCCACAGCCTGCAGCT | + |
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Preference number: 4 (lower is better) Translates to: GMGWAGHRTAALQRMGKKWLEVP*LPQPAA Trigger: AGCTGCAGGCTGTGGAAGCCAGGGCACCTCAAGCCA...TTTCTTCCCCATCCGCTGTAAGGCTGCTGTCCTGTGTCCAGCCCAACCCATGCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035179.9 |
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| CDS-3UTR GCA 90 bp | CAGCCTTACAGCGGATGGGGAAGAAACCCTCCCATTTACCCGGAAGGAGTGGGAGTCCTTGGCTTGAGGTaGCCTGGCTTCCACAGCCTG | + |
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Preference number: 4 (lower is better) Translates to: QPYSGWGRNPPIYPEGVGVLGLR*PGFHSL Trigger: CAGGCTGTGGAAGCCAGGGCACCTCAAGCCAAGGAC...TCCCACTCCTTCCGGGTAAATGGGAGGGTTTCTTCCCCATCCGCTGTAAGGCTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035179.9 |
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| CDS-3UTR CCA 90 bp | CAGCCTTACAGCGGATGGGGAAGAAACCCTCCCATTTACCCGGAAGGAGTGGGACCAGAGTCAGGCGCTTaGCATAGAAGTGGGCCACCA | + |
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Preference number: 4 (lower is better) Translates to: QPYSGWGRNPPIYPEGVGPESGA*HRSGPP Trigger: TGGTGGCCCACTTCTATGCCAAGCGCCTGACTCTGG...TCCCACTCCTTCCGGGTAAATGGGAGGGTTTCTTCCCCATCCGCTGTAAGGCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035179.9 |
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| CDS-3UTR TCA 90 bp | CAGGCATGGGTTGGGCTGGACACAGGACAGCAGCCTTACAGCGGATGGGGAAGAAGAAGTTTCAAGTCCTaGAGGGCTTCTAGTAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: QAWVGLDTGQQPYSGWGRRSFKS*RASSSC Trigger: GCAGCTACTAGAAGCCCTTCAGGACTTGAAACTTCT...TCTTCCCCATCCGCTGTAAGGCTGCTGTCCTGTGTCCAGCCCAACCCATGCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035179.9 |
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| 3UTR CAA 72 bp | AGAAGCCATCTCCTTTGCTTCCCTAACAGGCATGGGTaGGGCTGGACACAGGACAGCAGCCTTACAGCGGAT | + |
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Preference number: 4 (lower is better) Translates to: RSHLLCFPNRHG*GWTQDSSLTAD Trigger: ATCCGCTGTAAGGCTGCTGTCCTGTGTCCAGCCCAACCCATGCCTGTTAGGGAAGCAAAGGAGATGGCTTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035179.9 |
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| CDS-3UTR GCA 90 bp | TCCGTTGAAAACAGTGCATATCCTTCCCTGTTGCTAATCTGGCACCACCTACAATCCAGGCAGCTGTCCTaGGCGTCCACGAAGCCGCCA | + |
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Preference number: 4 (lower is better) Translates to: SVENSAYPSLLLIWHHLQSRQLS*ASTKPP Trigger: TGGCGGCTTCGTGGACGCGCAGGACAGCTGCCTGGA...TTGTAGGTGGTGCCAGATTAGCAACAGGGAAGGATATGCACTGTTTTCAACGGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035179.9 |
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| CDS-3UTR GCA 90 bp | CCTTTTGAAAAAGCTCTGGAACTTGGAGGCCCAGATATCAGCCTACTCTTCCAGCTGGCTTCCACAGCCTaGAGCTGTTCCAGAGTCAGG | + |
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Preference number: 4 (lower is better) Translates to: PFEKALELGGPDISLLFQLASTA*SCSRVR Trigger: CCTGACTCTGGAACAGCTGCAGGCTGTGGAAGCCAG...CTGGAAGAGTAGGCTGATATCTGGGCCTCCAAGTTCCAGAGCTTTTTCAAAAGG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035179.9 |
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| 3UTR CAA 72 bp | ACAACAACCACAAATTTATACATCATGCAGATAAGTTaGACGTGGCAGAGTAAAGGGTTCCCACGGACACCA | + |
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Preference number: 4 (lower is better) Translates to: TTTTNLYIMQIS*TWQSKGFPRTP Trigger: TGGTGTCCGTGGGAACCCTTTACTCTGCCACGTCAAACTTATCTGCATGATGTATAAATTTGTGGTTGTTGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035179.9 |
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| CDS-3UTR TCA 90 bp | ATACAATATCTTTCCACGAATCCAGCCCTTCAAAGGATAATAAAGGGAAAACTCAGAAGTTTCAAGTCCTaGAGGGCTTCTAGTAGCTGC | + |
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Preference number: 4 (lower is better) Translates to: IQYLSTNPALQRIIKGKLRSFKS*RASSSC Trigger: GCAGCTACTAGAAGCCCTTCAGGACTTGAAACTTCT...GAGTTTTCCCTTTATTATCCTTTGAAGGGCTGGATTCGTGGAAAGATATTGTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000185533.2 |
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| CDS GCA 90 bp | GCCCGTCAAAGCGCATCTGCATCAGCACGGCGAAGCGCATCGGGATaGGGCCGAACAGCTTGCGGGGGTCGGGCGCGTAGAGCAGCGCAT | + |
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Preference number: 5 (lower is better) Translates to: ARQSASASARRSASG*GRTACGGRARRAAH Trigger: ATGCGCTGCTCTACGCGCCCGACCCCCGCAAGCTGTTCGGCCGCATCCCGATGCGCTTCGCCGTGCTGATGCAGATGCGCTTTGACGGGC 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000035179.9 |
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| CDS-3UTR CAA 90 bp | ACAGCGGATGGGGAAGAAACCCTCCCATTTACCCGGAAGGAGTGGGATGTGCCACCCATGGTCCTTGGCTaGAGGTGCCCTGGCTTCCAC | + |
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Preference number: 5 (lower is better) Translates to: TADGEETLPFTRKEWDVPPMVLG*RCPGFH Trigger: GTGGAAGCCAGGGCACCTCAAGCCAAGGACCATGGG...TGGCACATCCCACTCCTTCCGGGTAAATGGGAGGGTTTCTTCCCCATCCGCTGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035179.9 |
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| CDS TCA 90 bp | ATCTTTAGTTTTGCAATAATGCCAGGATCCAGAAGTTTCAAGTCCTaGAGGGCTTCTAGTAGCTGCTCTCGGGCAGCTCCAATGAAGGAA | + |
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Preference number: 5 (lower is better) Translates to: IFSFAIMPGSRSFKS*RASSSCSRAAPMKE Trigger: TTCCTTCATTGGAGCTGCCCGAGAGCAGCTACTAGAAGCCCTTCAGGACTTGAAACTTCTGGATCCTGGCATTATTGCAAAACTAAAGAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000035179.9 ENSMUST00000185533.2 ENSMUST00000186925.2 |
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| CDS GCA 72 bp | GGGCCACCACGCGCGGTCTGGCCGCGATGTGTGAGCTaGGGTAGTCAGAGCGTTCAACGCGGAAGGCAGACA | + |
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Preference number: 6 (lower is better) Translates to: GPPRAVWPRCVS*GSQSVQRGRQT Trigger: TGTCTGCCTTCCGCGTTGAACGCTCTGACTACCGCAGCTCACACATCGCGGCCAGACCGCGCGTGGTGGCCC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035179.9 ENSMUST00000186925.2 |
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| CDS TCA 72 bp | TTTGCAATAATGCCAGGATCCAGAAGTTTCAAGTCCTaGAGGGCTTCTAGTAGCTGCTCTCGGGCAGCTCCA | + |
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Preference number: 6 (lower is better) Translates to: FAIMPGSRSFKS*RASSSCSRAAP Trigger: TGGAGCTGCCCGAGAGCAGCTACTAGAAGCCCTTCAGGACTTGAAACTTCTGGATCCTGGCATTATTGCAAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000035179.9 ENSMUST00000185533.2 ENSMUST00000186925.2 |
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