Pregenerated sensors for NUDT1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000036639Ensembl transcript IDs: ENSMUST00000050205.12, ENSMUST00000071881.10, ENSMUST00000110825.2, ENSMUST00000110826.8, ENSMUST00000110827.8, ENSMUST00000198660.5
Found 51 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTCCATTCTCCGACCCCCAGTGACTCAGTTCCACCAGCAGGGCTCTaGCTCTTAAAGGTGCCACAACCTTCTAAAACAGGACCAGTATGT | + |
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Preference number: 1 (lower is better) Translates to: LHSPTPSDSVPPAGL*LLKVPQPSKTGPVC Trigger: ACATACTGGTCCTGTTTTAGAAGGTTGTGGCACCTTTAAGAGCCAGAGCCCTGCTGGTGGAACTGAGTCACTGGGGGTCGGAGAATGGAG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 |
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| 3UTR-3UTR TCA 90 bp | GCAAGGCCCATCCTCCATTCTCCGACCCCCAGTGACTCAGTTCCACCAGCAGGGGGCTGTGTAGCATCCTaGGTGGCCAGAACCAGCCAG | + |
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Preference number: 2 (lower is better) Translates to: ARPILHSPTPSDSVPPAGGCVAS*VARTSQ Trigger: CTGGCTGGTTCTGGCCACTCAGGATGCTACACAGCC...CCCTGCTGGTGGAACTGAGTCACTGGGGGTCGGAGAATGGAGGATGGGCCTTGC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 |
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| 3UTR CAA 90 bp | CACACAGAAAATACCAGCCCCTGCTTGTGCCCTTGGTCCGACAGCTaGCGGCTGTGTAGCATCCTGAGTGGCCAGAACCAGCCAGACTTC | + |
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Preference number: 2 (lower is better) Translates to: HTENTSPCLCPWSDS*RLCSILSGQNQPDF Trigger: GAAGTCTGGCTGGTTCTGGCCACTCAGGATGCTACACAGCCGCAAGCTGTCGGACCAAGGGCACAAGCAGGGGCTGGTATTTTCTGTGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 ENSMUST00000110827.8 |
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| 3UTR-3UTR TCA 90 bp | CCAGCAGGGCTCTGGCTCTTAAAGGTGCCACAACCTTCTAAAACAGGACCAGTAGGCTGTGTAGCATCCTaGGTGGCCAGAACCAGCCAG | + |
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Preference number: 2 (lower is better) Translates to: PAGLWLLKVPQPSKTGPVGCVAS*VARTSQ Trigger: CTGGCTGGTTCTGGCCACTCAGGATGCTACACAGCC...TACTGGTCCTGTTTTAGAAGGTTGTGGCACCTTTAAGAGCCAGAGCCCTGCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 |
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| 3UTR-3UTR TCA 90 bp | CGGTTTATTTCAGCTCATCCATCTGGGGATACAGTCCATCGTGGAAAATCTGACTTCTCCGACCCCCAGTaGCTCAGTTCCACCAGCAGG | + |
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Preference number: 2 (lower is better) Translates to: RFISAHPSGDTVHRGKSDFSDPQ*LSSTSR Trigger: CCTGCTGGTGGAACTGAGTCACTGGGGGTCGGAGAA...GTCAGATTTTCCACGATGGACTGTATCCCCAGATGGATGAGCTGAAATAAACCG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 |
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| 3UTR-3UTR TCA 90 bp | CTCACCTATAAAGCAAGGCCCATCCTCCATTCTCCGACCCCCAGTGACTCAGTTACATTGGTGTATTGGTaGCATTTCACATTTCAACCC | + |
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Preference number: 2 (lower is better) Translates to: LTYKARPILHSPTPSDSVTLVYW*HFTFQP Trigger: GGGTTGAAATGTGAAATGTCACCAATACACCAATGT...AACTGAGTCACTGGGGGTCGGAGAATGGAGGATGGGCCTTGCTTTATAGGTGAG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 |
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| 3UTR-3UTR TCA 90 bp | AACGGTTTATTTCAGCTCATCCATCTGGGGATACAGTCCATCGTGGAAAATCTGACATTGGTGTATTGGTaGCATTTCACATTTCAACCC | + |
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Preference number: 2 (lower is better) Translates to: NGLFQLIHLGIQSIVENLTLVYW*HFTFQP Trigger: GGGTTGAAATGTGAAATGTCACCAATACACCAATGT...CAGATTTTCCACGATGGACTGTATCCCCAGATGGATGAGCTGAAATAAACCGTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 |
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| 3UTR-3UTR CAA 90 bp | CCAGCAGGGCTCTGGCTCTTAAAGGTGCCACAACCTTCTAAAACAGGACCAGTACCTTGGTCCGACAGCTaGCGGCTGTGTAGCATCCTG | + |
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Preference number: 3 (lower is better) Translates to: PAGLWLLKVPQPSKTGPVPWSDS*RLCSIL Trigger: CAGGATGCTACACAGCCGCAAGCTGTCGGACCAAGG...TACTGGTCCTGTTTTAGAAGGTTGTGGCACCTTTAAGAGCCAGAGCCCTGCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 |
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| 3UTR CAA 72 bp | AATACCAGCCCCTGCTTGTGCCCTTGGTCCGACAGCTaGCGGCTGTGTAGCATCCTGAGTGGCCAGAACCAG | + |
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Preference number: 4 (lower is better) Translates to: NTSPCLCPWSDS*RLCSILSGQNQ Trigger: CTGGTTCTGGCCACTCAGGATGCTACACAGCCGCAAGCTGTCGGACCAAGGGCACAAGCAGGGGCTGGTATT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 ENSMUST00000110827.8 |
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| CDS-3UTR TCA 90 bp | GACAGCTTGCGGCTGTGTAGCATCCTGAGTGGCCAGAACCAGCCAGACTTCTGTCCCAGGAGAACTCGCTaGGGCTGTAGCACTAGCACA | + |
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Preference number: 4 (lower is better) Translates to: DSLRLCSILSGQNQPDFCPRRTR*GCSTST Trigger: TGTGCTAGTGCTACAGCCTCAGCGAGTTCTCCTGGG...ACAGAAGTCTGGCTGGTTCTGGCCACTCAGGATGCTACACAGCCGCAAGCTGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 ENSMUST00000110827.8 |
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| CDS-3UTR GCA 90 bp | GACAGCTTGCGGCTGTGTAGCATCCTGAGTGGCCAGAACCAGCCAGACTTCTGTATGGTCTCTCCTTCCTaGACCTTGCCCCCGAAGCCA | + |
|
Preference number: 4 (lower is better) Translates to: DSLRLCSILSGQNQPDFCMVSPS*TLPPKP Trigger: TGGCTTCGGGGGCAAGGTGCAGGAAGGAGAGACCAT...ACAGAAGTCTGGCTGGTTCTGGCCACTCAGGATGCTACACAGCCGCAAGCTGTC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 ENSMUST00000110827.8 |
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| CDS-3UTR GCA 90 bp | GACAGCTTGCGGCTGTGTAGCATCCTGAGTGGCCAGAACCAGCCAGACTTCTGTAGCCCCTCTTCTTCATaGCCAGGAGAACTCGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: DSLRLCSILSGQNQPDFCSPSSS*PGELAE Trigger: CTCAGCGAGTTCTCCTGGGCATGAAGAAGAGGGGCT...ACAGAAGTCTGGCTGGTTCTGGCCACTCAGGATGCTACACAGCCGCAAGCTGTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 ENSMUST00000110827.8 |
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| CDS-3UTR GCA 90 bp | CTCACCTATAAAGCAAGGCCCATCCTCCATTCTCCGACCCCCAGTGACTCAGTTCTCCTTCCTGCACCTTaGCCCCGAAGCCATTCCAGC | + |
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Preference number: 4 (lower is better) Translates to: LTYKARPILHSPTPSDSVLLPAP*PRSHSS Trigger: GCTGGAATGGCTTCGGGGGCAAGGTGCAGGAAGGAG...AACTGAGTCACTGGGGGTCGGAGAATGGAGGATGGGCCTTGCTTTATAGGTGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 |
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| CDS-3UTR TCA 90 bp | CTCACCTATAAAGCAAGGCCCATCCTCCATTCTCCGACCCCCAGTGACTCAGTTCCCAGGAGAACTCGCTaGGGCTGTAGCACTAGCACA | + |
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Preference number: 4 (lower is better) Translates to: LTYKARPILHSPTPSDSVPRRTR*GCSTST Trigger: TGTGCTAGTGCTACAGCCTCAGCGAGTTCTCCTGGG...AACTGAGTCACTGGGGGTCGGAGAATGGAGGATGGGCCTTGCTTTATAGGTGAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 |
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| CDS-3UTR TCA 90 bp | GACAGCTTGCGGCTGTGTAGCATCCTGAGTGGCCAGAACCAGCCAGACTTCTGTCTGAGGATCGTGTCCTaGTCCTGGAACTTGAAGTGC | + |
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Preference number: 4 (lower is better) Translates to: DSLRLCSILSGQNQPDFCLRIVS*SWNLKC Trigger: GCACTTCAAGTTCCAGGATCAGGACACGATCCTCAG...ACAGAAGTCTGGCTGGTTCTGGCCACTCAGGATGCTACACAGCCGCAAGCTGTC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 ENSMUST00000110827.8 |
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| CDS-3UTR GCA 90 bp | TCACCTATAAAGCAAGGCCCATCCTCCATTCTCCGACCCCCAGTGACTCAGTTCATGGTCTCTCCTTCCTaGACCTTGCCCCCGAAGCCA | + |
|
Preference number: 4 (lower is better) Translates to: SPIKQGPSSILRPPVTQFMVSPS*TLPPKP Trigger: TGGCTTCGGGGGCAAGGTGCAGGAAGGAGAGACCAT...GAACTGAGTCACTGGGGGTCGGAGAATGGAGGATGGGCCTTGCTTTATAGGTGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 |
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| CDS-3UTR TCA 90 bp | CATTCTCCGACCCCCAGTGACTCAGTTCCACCAGCAGGGCTCTGGCTCTTAAAGCAGAACTTCTTCTTCTaGAGCAGGAGTGGGAACCAG | + |
|
Preference number: 4 (lower is better) Translates to: HSPTPSDSVPPAGLWLLKQNFFF*SRSGNQ Trigger: CTGGTTCCCACTCCTGCTTCAGAAGAAGAAGTTCTG...CTTTAAGAGCCAGAGCCCTGCTGGTGGAACTGAGTCACTGGGGGTCGGAGAATG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 |
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| CDS-3UTR TCA 90 bp | GACAGCTTGCGGCTGTGTAGCATCCTGAGTGGCCAGAACCAGCCAGACTTCTGTCAGAACTTCTTCTTCTaGAGCAGGAGTGGGAACCAG | + |
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Preference number: 4 (lower is better) Translates to: DSLRLCSILSGQNQPDFCQNFFF*SRSGNQ Trigger: CTGGTTCCCACTCCTGCTTCAGAAGAAGAAGTTCTG...ACAGAAGTCTGGCTGGTTCTGGCCACTCAGGATGCTACACAGCCGCAAGCTGTC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 ENSMUST00000110827.8 |
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| CDS-3UTR CCA 90 bp | GACAGCTTGCGGCTGTGTAGCATCCTGAGTGGCCAGAACCAGCCAGACTTCTGTCTTCTGAAGCAGGAGTaGGAACCAGTAGCTGTCATC | + |
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Preference number: 4 (lower is better) Translates to: DSLRLCSILSGQNQPDFCLLKQE*EPVAVI Trigger: GATGACAGCTACTGGTTCCCACTCCTGCTTCAGAAG...ACAGAAGTCTGGCTGGTTCTGGCCACTCAGGATGCTACACAGCCGCAAGCTGTC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 ENSMUST00000110827.8 |
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| CDS-3UTR TCA 90 bp | TCACCTATAAAGCAAGGCCCATCCTCCATTCTCCGACCCCCAGTGACTCAGTTCCTGAGGATCGTGTCCTaGTCCTGGAACTTGAAGTGC | + |
|
Preference number: 4 (lower is better) Translates to: SPIKQGPSSILRPPVTQFLRIVS*SWNLKC Trigger: GCACTTCAAGTTCCAGGATCAGGACACGATCCTCAG...GAACTGAGTCACTGGGGGTCGGAGAATGGAGGATGGGCCTTGCTTTATAGGTGA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 |
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| CDS-3UTR TCA 90 bp | ACCTATAAAGCAAGGCCCATCCTCCATTCTCCGACCCCCAGTGACTCAGTTCCATCCAGTTGGAACCACTaGGGGCGCATTTCTTCACTT | + |
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Preference number: 4 (lower is better) Translates to: TYKARPILHSPTPSDSVPSSWNH*GRISSL Trigger: AAGTGAAGAAATGCGCCCTCAGTGGTTCCAACTGGA...TGGAACTGAGTCACTGGGGGTCGGAGAATGGAGGATGGGCCTTGCTTTATAGGT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 |
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| CDS-3UTR GCA 90 bp | CGGTTTATTTCAGCTCATCCATCTGGGGATACAGTCCATCGTGGAAAATCTGACCTCCTTCCTGCACCTTaGCCCCGAAGCCATTCCAGC | + |
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Preference number: 4 (lower is better) Translates to: RFISAHPSGDTVHRGKSDLLPAP*PRSHSS Trigger: GCTGGAATGGCTTCGGGGGCAAGGTGCAGGAAGGAG...GTCAGATTTTCCACGATGGACTGTATCCCCAGATGGATGAGCTGAAATAAACCG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 |
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| CDS-3UTR GCA 90 bp | GACAGCTTGCGGCTGTGTAGCATCCTGAGTGGCCAGAACCAGCCAGACTTCTGTTCCTGGAACTTGAAGTaGCCACAGAACTTCTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: DSLRLCSILSGQNQPDFCSWNLK*PQNFFF Trigger: GAAGAAGAAGTTCTGTGGGCACTTCAAGTTCCAGGA...ACAGAAGTCTGGCTGGTTCTGGCCACTCAGGATGCTACACAGCCGCAAGCTGTC 52% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 ENSMUST00000110827.8 |
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| CDS-3UTR CCA 90 bp | CCAGCAGGGCTCTGGCTCTTAAAGGTGCCACAACCTTCTAAAACAGGACCAGTACTTCTGAAGCAGGAGTaGGAACCAGTAGCTGTCATC | + |
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Preference number: 4 (lower is better) Translates to: PAGLWLLKVPQPSKTGPVLLKQE*EPVAVI Trigger: GATGACAGCTACTGGTTCCCACTCCTGCTTCAGAAG...TACTGGTCCTGTTTTAGAAGGTTGTGGCACCTTTAAGAGCCAGAGCCCTGCTGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 |
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| CDS-3UTR TCA 90 bp | ATTTCAGCTCATCCATCTGGGGATACAGTCCATCGTGGAAAATCTGACACAGTACCCAGGAGAACTCGCTaGGGCTGTAGCACTAGCACA | + |
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Preference number: 4 (lower is better) Translates to: ISAHPSGDTVHRGKSDTVPRRTR*GCSTST Trigger: TGTGCTAGTGCTACAGCCTCAGCGAGTTCTCCTGGG...TACTGTGTCAGATTTTCCACGATGGACTGTATCCCCAGATGGATGAGCTGAAAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 |
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| CDS-3UTR GCA 90 bp | TCACCTATAAAGCAAGGCCCATCCTCCATTCTCCGACCCCCAGTGACTCAGTTCTCCTGGAACTTGAAGTaGCCACAGAACTTCTTCTTC | + |
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Preference number: 4 (lower is better) Translates to: SPIKQGPSSILRPPVTQFSWNLK*PQNFFF Trigger: GAAGAAGAAGTTCTGTGGGCACTTCAAGTTCCAGGA...GAACTGAGTCACTGGGGGTCGGAGAATGGAGGATGGGCCTTGCTTTATAGGTGA 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 |
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| CDS-3UTR CCA 90 bp | TCAGTTCCACCAGCAGGGCTCTGGCTCTTAAAGGTGCCACAACCTTCTAAAACACTTCTGAAGCAGGAGTaGGAACCAGTAGCTGTCATC | + |
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Preference number: 4 (lower is better) Translates to: SVPPAGLWLLKVPQPSKTLLKQE*EPVAVI Trigger: GATGACAGCTACTGGTTCCCACTCCTGCTTCAGAAG...TGTTTTAGAAGGTTGTGGCACCTTTAAGAGCCAGAGCCCTGCTGGTGGAACTGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 |
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| CDS-3UTR GCA 90 bp | AACGGTTTATTTCAGCTCATCCATCTGGGGATACAGTCCATCGTGGAAAATCTGAGCCCCTCTTCTTCATaGCCAGGAGAACTCGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: NGLFQLIHLGIQSIVENLSPSSS*PGELAE Trigger: CTCAGCGAGTTCTCCTGGGCATGAAGAAGAGGGGCT...CAGATTTTCCACGATGGACTGTATCCCCAGATGGATGAGCTGAAATAAACCGTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 |
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| CDS-3UTR GCA 90 bp | CAACCTTCTAAAACAGGACCAGTATGTGGGGACGAAGAATTCAAACATTGGTGTAGCCCCTCTTCTTCATaGCCAGGAGAACTCGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: QPSKTGPVCGDEEFKHWCSPSSS*PGELAE Trigger: CTCAGCGAGTTCTCCTGGGCATGAAGAAGAGGGGCT...ACACCAATGTTTGAATTCTTCGTCCCCACATACTGGTCCTGTTTTAGAAGGTTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 |
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| CDS-3UTR TCA 90 bp | CAACCTTCTAAAACAGGACCAGTATGTGGGGACGAAGAATTCAAACATTGGTGTCTGAGGATCGTGTCCTaGTCCTGGAACTTGAAGTGC | + |
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Preference number: 4 (lower is better) Translates to: QPSKTGPVCGDEEFKHWCLRIVS*SWNLKC Trigger: GCACTTCAAGTTCCAGGATCAGGACACGATCCTCAG...ACACCAATGTTTGAATTCTTCGTCCCCACATACTGGTCCTGTTTTAGAAGGTTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 |
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| CDS-3UTR TCA 90 bp | CAACCTTCTAAAACAGGACCAGTATGTGGGGACGAAGAATTCAAACATTGGTGTTCCAGTTGGAACCACTaGGGGCGCATTTCTTCACTT | + |
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Preference number: 4 (lower is better) Translates to: QPSKTGPVCGDEEFKHWCSSWNH*GRISSL Trigger: AAGTGAAGAAATGCGCCCTCAGTGGTTCCAACTGGA...ACACCAATGTTTGAATTCTTCGTCCCCACATACTGGTCCTGTTTTAGAAGGTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 |
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| CDS TCA 90 bp | TCCGGCCACAGGTCGGCAAAGGGGATCTGGTCCAGTTGGAACCACTaGGGGCGCATTTCTTCACTTTCTGTGGGCGTCCCGTGCACATGG | + |
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Preference number: 5 (lower is better) Translates to: SGHRSAKGIWSSWNH*GRISSLSVGVPCTW Trigger: CCATGTGCACGGGACGCCCACAGAAAGTGAAGAAATGCGCCCTCAGTGGTTCCAACTGGACCAGATCCCCTTTGCCGACCTGTGGCCGGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 ENSMUST00000110826.8 ENSMUST00000110827.8 |
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| CDS-3UTR CAA 90 bp | GACAGCTTGCGGCTGTGTAGCATCCTGAGTGGCCAGAACCAGCCAGACTTCTGTTCTCCTTCCTGCACCTaGCCCCCGAAGCCATTCCAG | + |
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Preference number: 5 (lower is better) Translates to: DSLRLCSILSGQNQPDFCSPSCT*PPKPFQ Trigger: CTGGAATGGCTTCGGGGGCAAGGTGCAGGAAGGAGA...ACAGAAGTCTGGCTGGTTCTGGCCACTCAGGATGCTACACAGCCGCAAGCTGTC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 ENSMUST00000110827.8 |
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| CDS GCA 90 bp | TCCTTCCCTGCCCATGGCTCACCTTCACTTTCTGTGGGCGTCCCGTaGACATGGTCAGCCGAGAAGATATGCACGTCCATCAGCTCAGGA | + |
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Preference number: 5 (lower is better) Translates to: SFPAHGSPSLSVGVP*TWSAEKICTSISSG Trigger: TCCTGAGCTGATGGACGTGCATATCTTCTCGGCTGACCATGTGCACGGGACGCCCACAGAAAGTGAAGGTGAGCCATGGGCAGGGAAGGA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110825.2 |
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| CDS CCA 90 bp | GCTTGGTGCCTATACTTGGCAAGGGTTGGTTCCTTTCTCCTAGGCTaGCAAGTGAGTCTGGGTACCCATCCTTCCCTGCCCATGGCTCAC | + |
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Preference number: 5 (lower is better) Translates to: AWCLYLARVGSFLLG*QVSLGTHPSLPMAH Trigger: GTGAGCCATGGGCAGGGAAGGATGGGTACCCAGACTCACTTGCCAGCCTAGGAGAAAGGAACCAACCCTTGCCAAGTATAGGCACCAAGC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110825.2 |
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| CDS-3UTR CAA 90 bp | CTCACCTATAAAGCAAGGCCCATCCTCCATTCTCCGACCCCCAGTGACTCAGTTTCTCCTTCCTGCACCTaGCCCCCGAAGCCATTCCAG | + |
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Preference number: 5 (lower is better) Translates to: LTYKARPILHSPTPSDSVSPSCT*PPKPFQ Trigger: CTGGAATGGCTTCGGGGGCAAGGTGCAGGAAGGAGA...AACTGAGTCACTGGGGGTCGGAGAATGGAGGATGGGCCTTGCTTTATAGGTGAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 2 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 |
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| CDS CCA 90 bp | TCTGGTCCAGTTGGAACCACTGAGGGCGCATTTCTTCACTTTCTGTaGGCGTCCCGTGCACATGGTCAGCCGAGAAGATATGCACGTCCA | + |
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Preference number: 5 (lower is better) Translates to: SGPVGTTEGAFLHFL*ASRAHGQPRRYARP Trigger: TGGACGTGCATATCTTCTCGGCTGACCATGTGCACGGGACGCCCACAGAAAGTGAAGAAATGCGCCCTCAGTGGTTCCAACTGGACCAGA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 ENSMUST00000110826.8 ENSMUST00000110827.8 ENSMUST00000198660.5 |
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| CDS CCA 90 bp | GCCTGGCTGCCCCTGGTTCAGACGCAAAGCAAAGATAGAAAGGCTTaGTGCCTATACTTGGCAAGGGTTGGTTCCTTTCTCCTAGGCTGG | + |
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Preference number: 5 (lower is better) Translates to: AWLPLVQTQSKDRKA*CLYLARVGSFLLGW Trigger: CCAGCCTAGGAGAAAGGAACCAACCCTTGCCAAGTATAGGCACCAAGCCTTTCTATCTTTGCTTTGCGTCTGAACCAGGGGCAGCCAGGC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110825.2 |
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| CDS CCA 90 bp | TGCACGTCCATCAGCTCAGGAGAGCCCACAAATTCAAACGAGATGTaGCCTACCTTGTGCAGTGTATCCACGCTCAGACCACTTTCTTCC | + |
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Preference number: 5 (lower is better) Translates to: CTSISSGEPTNSNEM*PTLCSVSTLRPLSS Trigger: GGAAGAAAGTGGTCTGAGCGTGGATACACTGCACAAGGTAGGCCACATCTCGTTTGAATTTGTGGGCTCTCCTGAGCTGATGGACGTGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 ENSMUST00000110825.2 ENSMUST00000110826.8 ENSMUST00000110827.8 ENSMUST00000198660.5 |
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| CDS-3UTR CAA 90 bp | ATTTCAGCTCATCCATCTGGGGATACAGTCCATCGTGGAAAATCTGACACAGTATCTCCTTCCTGCACCTaGCCCCCGAAGCCATTCCAG | + |
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Preference number: 5 (lower is better) Translates to: ISAHPSGDTVHRGKSDTVSPSCT*PPKPFQ Trigger: CTGGAATGGCTTCGGGGGCAAGGTGCAGGAAGGAGA...TACTGTGTCAGATTTTCCACGATGGACTGTATCCCCAGATGGATGAGCTGAAAT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 |
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| CDS CAA 72 bp | TTAGCCCCATCCTCAATGGTCTCTCCTTCCTGCACCTaGCCCCCGAAGCCATTCCAGCGGCCAGCACCAAAG | + |
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Preference number: 6 (lower is better) Translates to: LAPSSMVSPSCT*PPKPFQRPAPK Trigger: CTTTGGTGCTGGCCGCTGGAATGGCTTCGGGGGCAAGGTGCAGGAAGGAGAGACCATTGAGGATGGGGCTAA 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 6 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 ENSMUST00000110825.2 ENSMUST00000110826.8 ENSMUST00000110827.8 ENSMUST00000198660.5 |
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| CDS CAA 90 bp | GTAGCTGTCATCCGGCCACAGGTCGGCAAAGGGGATCTGGTCCAGTaGGAACCACTGAGGGCGCATTTCTTCACTTTCTGTGGGCGTCCC | + |
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Preference number: 6 (lower is better) Translates to: VAVIRPQVGKGDLVQ*EPLRAHFFTFCGRP Trigger: GGGACGCCCACAGAAAGTGAAGAAATGCGCCCTCAGTGGTTCCAACTGGACCAGATCCCCTTTGCCGACCTGTGGCCGGATGACAGCTAC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 ENSMUST00000110826.8 ENSMUST00000110827.8 |
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| CDS TCA 72 bp | AGGTCGGCAAAGGGGATCTGGTCCAGTTGGAACCACTaGGGGCGCATTTCTTCACTTTCTGTGGGCGTCCCG | + |
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Preference number: 6 (lower is better) Translates to: RSAKGIWSSWNH*GRISSLSVGVP Trigger: CGGGACGCCCACAGAAAGTGAAGAAATGCGCCCTCAGTGGTTCCAACTGGACCAGATCCCCTTTGCCGACCT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 4 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 ENSMUST00000110826.8 ENSMUST00000110827.8 |
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| CDS GCA 72 bp | GCCCATGGCTCACCTTCACTTTCTGTGGGCGTCCCGTaGACATGGTCAGCCGAGAAGATATGCACGTCCATC | + |
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Preference number: 6 (lower is better) Translates to: AHGSPSLSVGVP*TWSAEKICTSI Trigger: GATGGACGTGCATATCTTCTCGGCTGACCATGTGCACGGGACGCCCACAGAAAGTGAAGGTGAGCCATGGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110825.2 |
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| CDS CCA 72 bp | GGCTCACCTTCACTTTCTGTGGGCGTCCCGTGCACATaGTCAGCCGAGAAGATATGCACGTCCATCAGCTCA | + |
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Preference number: 6 (lower is better) Translates to: GSPSLSVGVPCT*SAEKICTSISS Trigger: TGAGCTGATGGACGTGCATATCTTCTCGGCTGACCATGTGCACGGGACGCCCACAGAAAGTGAAGGTGAGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110825.2 |
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| CDS CCA 72 bp | CATCCTTCCCTGCCCATGGCTCACCTTCACTTTCTGTaGGCGTCCCGTGCACATGGTCAGCCGAGAAGATAT | + |
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Preference number: 6 (lower is better) Translates to: HPSLPMAHLHFL*ASRAHGQPRRY Trigger: ATATCTTCTCGGCTGACCATGTGCACGGGACGCCCACAGAAAGTGAAGGTGAGCCATGGGCAGGGAAGGATG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110825.2 |
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| CDS CCA 72 bp | CTATACTTGGCAAGGGTTGGTTCCTTTCTCCTAGGCTaGCAAGTGAGTCTGGGTACCCATCCTTCCCTGCCC | + |
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Preference number: 6 (lower is better) Translates to: LYLARVGSFLLG*QVSLGTHPSLP Trigger: GGGCAGGGAAGGATGGGTACCCAGACTCACTTGCCAGCCTAGGAGAAAGGAACCAACCCTTGCCAAGTATAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000110825.2 |
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| CDS CCA 72 bp | TCCCCACGCTACAAGTCTGCTCTGCCTGGCTGCCCCTaGTTCAGACGCAAAGCAAAGATAGAAAGGCTTGGT | + |
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Preference number: 6 (lower is better) Translates to: SPRYKSALPGCP*FRRKAKIERLG Trigger: ACCAAGCCTTTCTATCTTTGCTTTGCGTCTGAACCAGGGGCAGCCAGGCAGAGCAGACTTGTAGCGTGGGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000110825.2 |
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| CDS CCA 72 bp | CGCATTTCTTCACTTTCTGTGGGCGTCCCGTGCACATaGTCAGCCGAGAAGATATGCACGTCCATCAGCTCA | + |
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Preference number: 6 (lower is better) Translates to: RISSLSVGVPCT*SAEKICTSISS Trigger: TGAGCTGATGGACGTGCATATCTTCTCGGCTGACCATGTGCACGGGACGCCCACAGAAAGTGAAGAAATGCG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 ENSMUST00000110826.8 ENSMUST00000110827.8 ENSMUST00000198660.5 |
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| CDS CCA 72 bp | ATCAGCTCAGGAGAGCCCACAAATTCAAACGAGATGTaGCCTACCTTGTGCAGTGTATCCACGCTCAGACCA | + |
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Preference number: 6 (lower is better) Translates to: ISSGEPTNSNEM*PTLCSVSTLRP Trigger: TGGTCTGAGCGTGGATACACTGCACAAGGTAGGCCACATCTCGTTTGAATTTGTGGGCTCTCCTGAGCTGAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 6 transcripts: ENSMUST00000050205.12 ENSMUST00000071881.10 ENSMUST00000110825.2 ENSMUST00000110826.8 ENSMUST00000110827.8 ENSMUST00000198660.5 |
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| CDS CCA 72 bp | CCCCTGGTTCAGACGCAAAGCAAAGATAGAAAGGCTTaGTGCCTATACTTGGCAAGGGTTGGTTCCTTTCTC | + |
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Preference number: 6 (lower is better) Translates to: PLVQTQSKDRKA*CLYLARVGSFL Trigger: GAGAAAGGAACCAACCCTTGCCAAGTATAGGCACCAAGCCTTTCTATCTTTGCTTTGCGTCTGAACCAGGGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000110825.2 |
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