Pregenerated sensors for NUDCD2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020328Ensembl transcript IDs: ENSMUST00000020578.11, ENSMUST00000127382.2
Found 50 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | TCTTTAACTGTAGACACTGGCTGCTCCATCCTTCTCCTCATCAACTaGATTAAGTTGCCAGCACCTGCCGGGATCCACGAGACAGAGAAA | + |
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Preference number: 1 (lower is better) Translates to: SLTVDTGCSILLLIN*IKLPAPAGIHETEK Trigger: TTTCTCTGTCTCGTGGATCCCGGCAGGTGCTGGCAACTTAATGCAGTTGATGAGGAGAAGGATGGAGCAGCCAGTGTCTACAGTTAAAGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| 3UTR GCA 90 bp | CTGCAGAGCAGTAAAAGTTATCATCTATCCACATTAGAGCTGCTCTaGCTCCTGTGCAAACCATATCTGAATGTGATCTTTACAACCATA | + |
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Preference number: 1 (lower is better) Translates to: LQSSKSYHLSTLELL*LLCKPYLNVIFTTI Trigger: TATGGTTGTAAAGATCACATTCAGATATGGTTTGCACAGGAGGCAGAGCAGCTCTAATGTGGATAGATGATAACTTTTACTGCTCTGCAG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| 3UTR CCA 90 bp | AAACCATATCTGAATGTGATCTTTACAACCATATTGAAATACACTTaGCAATCTTTAACTGTAGACACTGGCTGCTCCATCCTTCTCCTC | + |
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Preference number: 1 (lower is better) Translates to: KPYLNVIFTTILKYT*QSLTVDTGCSILLL Trigger: GAGGAGAAGGATGGAGCAGCCAGTGTCTACAGTTAAAGATTGCCAAGTGTATTTCAATATGGTTGTAAAGATCACATTCAGATATGGTTT 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| 3UTR GCA 90 bp | AGTAAAAGTTATCATCTATCCACATTAGAGCTGCTCTGCCTCCTGTaGAAACCATATCTGAATGTGATCTTTACAACCATATTGAAATAC | + |
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Preference number: 1 (lower is better) Translates to: SKSYHLSTLELLCLL*KPYLNVIFTTILKY Trigger: GTATTTCAATATGGTTGTAAAGATCACATTCAGATATGGTTTGCACAGGAGGCAGAGCAGCTCTAATGTGGATAGATGATAACTTTTACT 37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| 3UTR-3UTR GCA 90 bp | CTGCTCTGCCTCCTGTGCAAACCATATCTGAATGTGATCTTTACAACCATATTGTCAACTGCATTAAGTTaGCAGCACCTGCCGGGATCC | + |
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Preference number: 2 (lower is better) Translates to: LLCLLCKPYLNVIFTTILSTALS*QHLPGS Trigger: GGATCCCGGCAGGTGCTGGCAACTTAATGCAGTTGA...CAATATGGTTGTAAAGATCACATTCAGATATGGTTTGCACAGGAGGCAGAGCAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| 3UTR CAA 90 bp | TGCCTCCTGTGCAAACCATATCTGAATGTGATCTTTACAACCATATaGAAATACACTTGGCAATCTTTAACTGTAGACACTGGCTGCTCC | + |
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Preference number: 2 (lower is better) Translates to: CLLCKPYLNVIFTTI*KYTWQSLTVDTGCS Trigger: GGAGCAGCCAGTGTCTACAGTTAAAGATTGCCAAGTGTATTTCAATATGGTTGTAAAGATCACATTCAGATATGGTTTGCACAGGAGGCA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| 3UTR-3UTR GCA 90 bp | ATTTCCAGTTCTGTCCTTTCCGTGAACAGACAAGCATATTTAGACAAAGGGTATCTTCTCCTCATCAACTaGATTAAGTTGCCAGCACCT | + |
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Preference number: 2 (lower is better) Translates to: ISSSVLSVNRQAYLDKGYLLLIN*IKLPAP Trigger: AGGTGCTGGCAACTTAATGCAGTTGATGAGGAGAAG...ATACCCTTTGTCTAAATATGCTTGTCTGTTCACGGAAAGGACAGAACTGGAAAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020578.11 |
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| 3UTR-3UTR GCA 90 bp | GCACCAAACCAGTTAGAACTTTTCATTAACTCAAGTTATCCAAAGTACTTCAGTACTGTAGACACTGGCTaGTCCATCCTTCTCCTCATC | + |
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Preference number: 2 (lower is better) Translates to: APNQLELFINSSYPKYFSTVDTG*SILLLI Trigger: GATGAGGAGAAGGATGGAGCAGCCAGTGTCTACAGT...ACTGAAGTACTTTGGATAACTTGAGTTAATGAAAAGTTCTAACTGGTTTGGTGC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000020578.11 |
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| 3UTR CAA 90 bp | CAAACCATATCTGAATGTGATCTTTACAACCATATTGAAATACACTaGGCAATCTTTAACTGTAGACACTGGCTGCTCCATCCTTCTCCT | + |
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Preference number: 2 (lower is better) Translates to: QTISECDLYNHIEIH*AIFNCRHWLLHPSP Trigger: AGGAGAAGGATGGAGCAGCCAGTGTCTACAGTTAAAGATTGCCAAGTGTATTTCAATATGGTTGTAAAGATCACATTCAGATATGGTTTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| 3UTR GCA 72 bp | GCTGCTCCATCCTTCTCCTCATCAACTGCATTAAGTTaGCAGCACCTGCCGGGATCCACGAGACAGAGAAAC | + |
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Preference number: 3 (lower is better) Translates to: AAPSFSSSTALS*QHLPGSTRQRN Trigger: GTTTCTCTGTCTCGTGGATCCCGGCAGGTGCTGGCAACTTAATGCAGTTGATGAGGAGAAGGATGGAGCAGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| 3UTR-3UTR CAA 90 bp | AACTTACTGCAGAGCAGTAAAAGTTATCATCTATCCACATTAGAGCTGCTCTGCATCAACTGCATTAAGTaGCCAGCACCTGCCGGGATC | + |
|
Preference number: 3 (lower is better) Translates to: NLLQSSKSYHLSTLELLCINCIK*PAPAGI Trigger: GATCCCGGCAGGTGCTGGCAACTTAATGCAGTTGAT...GCAGAGCAGCTCTAATGTGGATAGATGATAACTTTTACTGCTCTGCAGTAAGTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| 3UTR GCA 72 bp | AAATACACTTGGCAATCTTTAACTGTAGACACTGGCTaGTCCATCCTTCTCCTCATCAACTGCATTAAGTTG | + |
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Preference number: 3 (lower is better) Translates to: KYTWQSLTVDTG*SILLLINCIKL Trigger: CAACTTAATGCAGTTGATGAGGAGAAGGATGGAGCAGCCAGTGTCTACAGTTAAAGATTGCCAAGTGTATTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| 3UTR GCA 72 bp | TATCATCTATCCACATTAGAGCTGCTCTGCCTCCTGTaGAAACCATATCTGAATGTGATCTTTACAACCATA | + |
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Preference number: 3 (lower is better) Translates to: YHLSTLELLCLL*KPYLNVIFTTI Trigger: TATGGTTGTAAAGATCACATTCAGATATGGTTTGCACAGGAGGCAGAGCAGCTCTAATGTGGATAGATGATA 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| 3UTR GCA 72 bp | AGTAAAAGTTATCATCTATCCACATTAGAGCTGCTCTaGCTCCTGTGCAAACCATATCTGAATGTGATCTTT | + |
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Preference number: 3 (lower is better) Translates to: SKSYHLSTLELL*LLCKPYLNVIF Trigger: AAAGATCACATTCAGATATGGTTTGCACAGGAGGCAGAGCAGCTCTAATGTGGATAGATGATAACTTTTACT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| CDS-3UTR GCA 90 bp | GGCTGCTCCATCCTTCTCCTCATCAACTGCATTAAGTTGCCAGCACCTGCCGGGGCCACGTGCCGACTCTaGAGGCCGCACTGGATGTCC | + |
|
Preference number: 4 (lower is better) Translates to: GCSILLLINCIKLPAPAGATCRL*RPHWMS Trigger: GGACATCCAGTGCGGCCTGCAGAGTCGGCACGTGGC...CCCGGCAGGTGCTGGCAACTTAATGCAGTTGATGAGGAGAAGGATGGAGCAGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| CDS-3UTR CCA 90 bp | GGCTGCTCCATCCTTCTCCTCATCAACTGCATTAAGTTGCCAGCACCTGCCGGGACCTCCTCCAGGGTCTaGTACCACTGTCCCCACGGA | + |
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Preference number: 4 (lower is better) Translates to: GCSILLLINCIKLPAPAGTSSRV*YHCPHG Trigger: TCCGTGGGGACAGTGGTACCAGACCCTGGAGGAGGT...CCCGGCAGGTGCTGGCAACTTAATGCAGTTGATGAGGAGAAGGATGGAGCAGCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| CDS-3UTR GCA 90 bp | TGGCAATCTTTAACTGTAGACACTGGCTGCTCCATCCTTCTCCTCATCAACTGCAAGGAACCACCCCGCTaGGCTCCTCAAACGGGGCGG | + |
|
Preference number: 4 (lower is better) Translates to: WQSLTVDTGCSILLLINCKEPPR*APQTGR Trigger: CCGCCCCGTTTGAGGAGCGCAGCGGGGTGGTTCCTT...GCAGTTGATGAGGAGAAGGATGGAGCAGCCAGTGTCTACAGTTAAAGATTGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| CDS-3UTR CCA 90 bp | GTAGACACTGGCTGCTCCATCCTTCTCCTCATCAACTGCATTAAGTTGCCAGCAACCTCCTCCAGGGTCTaGTACCACTGTCCCCACGGA | + |
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Preference number: 4 (lower is better) Translates to: VDTGCSILLLINCIKLPATSSRV*YHCPHG Trigger: TCCGTGGGGACAGTGGTACCAGACCCTGGAGGAGGT...TGCTGGCAACTTAATGCAGTTGATGAGGAGAAGGATGGAGCAGCCAGTGTCTAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| CDS-3UTR GCA 90 bp | TCTTTAACTGTAGACACTGGCTGCTCCATCCTTCTCCTCATCAACTGCATTAAGAAGGAACCACCCCGCTaGGCTCCTCAAACGGGGCGG | + |
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Preference number: 4 (lower is better) Translates to: SLTVDTGCSILLLINCIKKEPPR*APQTGR Trigger: CCGCCCCGTTTGAGGAGCGCAGCGGGGTGGTTCCTT...CTTAATGCAGTTGATGAGGAGAAGGATGGAGCAGCCAGTGTCTACAGTTAAAGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| CDS-3UTR GCA 90 bp | TTAACTGTAGACACTGGCTGCTCCATCCTTCTCCTCATCAACTGCATTAAGTTGGCCACGTGCCGACTCTaGAGGCCGCACTGGATGTCC | + |
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Preference number: 4 (lower is better) Translates to: LTVDTGCSILLLINCIKLATCRL*RPHWMS Trigger: GGACATCCAGTGCGGCCTGCAGAGTCGGCACGTGGC...CAACTTAATGCAGTTGATGAGGAGAAGGATGGAGCAGCCAGTGTCTACAGTTAA 53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| CDS-3UTR TCA 90 bp | ACTTGGCAATCTTTAACTGTAGACACTGGCTGCTCCATCCTTCTCCTCATCAACCAAACAGTTTCCCCTTaGGGATCTCGCGGCCACCCA | + |
|
Preference number: 4 (lower is better) Translates to: TWQSLTVDTGCSILLLINQTVSP*GSRGHP Trigger: TGGGTGGCCGCGAGATCCTCAAGGGGAAACTGTTTG...GTTGATGAGGAGAAGGATGGAGCAGCCAGTGTCTACAGTTAAAGATTGCCAAGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| CDS-3UTR TCA 90 bp | TTAACTGTAGACACTGGCTGCTCCATCCTTCTCCTCATCAACTGCATTAAGTTGGCACCTGGACTTCAATaGACACCTCCTCCAGGGTCT | + |
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Preference number: 4 (lower is better) Translates to: LTVDTGCSILLLINCIKLAPGLQ*TPPPGS Trigger: AGACCCTGGAGGAGGTGTTCATTGAAGTCCAGGTGC...CAACTTAATGCAGTTGATGAGGAGAAGGATGGAGCAGCCAGTGTCTACAGTTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| CDS-3UTR TCA 90 bp | ATTAGAGCTGCTCTGCCTCCTGTGCAAACCATATCTGAATGTGATCTTTACAACCAAACAGTTTCCCCTTaGGGATCTCGCGGCCACCCA | + |
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Preference number: 4 (lower is better) Translates to: IRAALPPVQTISECDLYNQTVSP*GSRGHP Trigger: TGGGTGGCCGCGAGATCCTCAAGGGGAAACTGTTTG...GTTGTAAAGATCACATTCAGATATGGTTTGCACAGGAGGCAGAGCAGCTCTAAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| CDS-3UTR GCA 90 bp | TCTTTAACTGTAGACACTGGCTGCTCCATCCTTCTCCTCATCAACTGCATTAAGCTCTGCATTTGGTCTTaGACCCAGGGGTCAGCTGCA | + |
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Preference number: 4 (lower is better) Translates to: SLTVDTGCSILLLINCIKLCIWS*TQGSAA Trigger: TGCAGCTGACCCCTGGGTGCAAGACCAAATGCAGAG...CTTAATGCAGTTGATGAGGAGAAGGATGGAGCAGCCAGTGTCTACAGTTAAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| CDS-3UTR GCA 90 bp | TTAACTGTAGACACTGGCTGCTCCATCCTTCTCCTCATCAACTGCATTAAGTTGCTCTGCATTTGGTCTTaGACCCAGGGGTCAGCTGCA | + |
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Preference number: 4 (lower is better) Translates to: LTVDTGCSILLLINCIKLLCIWS*TQGSAA Trigger: TGCAGCTGACCCCTGGGTGCAAGACCAAATGCAGAG...CAACTTAATGCAGTTGATGAGGAGAAGGATGGAGCAGCCAGTGTCTACAGTTAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| CDS-3UTR TCA 90 bp | ATTAGAGCTGCTCTGCCTCCTGTGCAAACCATATCTGAATGTGATCTTTACAACGCACCTGGACTTCAATaGACACCTCCTCCAGGGTCT | + |
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Preference number: 4 (lower is better) Translates to: IRAALPPVQTISECDLYNAPGLQ*TPPPGS Trigger: AGACCCTGGAGGAGGTGTTCATTGAAGTCCAGGTGC...GTTGTAAAGATCACATTCAGATATGGTTTGCACAGGAGGCAGAGCAGCTCTAAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| CDS-3UTR TCA 90 bp | CTGCAGAGCAGTAAAAGTTATCATCTATCCACATTAGAGCTGCTCTGCCTCCTGTCATTTCTCAAGGTTTaGGAAATCTGGTCCGCCCTT | + |
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Preference number: 4 (lower is better) Translates to: LQSSKSYHLSTLELLCLLSFLKV*EIWSAL Trigger: AAGGGCGGACCAGATTTCTCAAACCTTGAGAAATGA...CAGGAGGCAGAGCAGCTCTAATGTGGATAGATGATAACTTTTACTGCTCTGCAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| CDS-3UTR TCA 90 bp | TACACTTGGCAATCTTTAACTGTAGACACTGGCTGCTCCATCCTTCTCCTCATCTCATTTCTCAAGGTTTaGGAAATCTGGTCCGCCCTT | + |
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Preference number: 4 (lower is better) Translates to: YTWQSLTVDTGCSILLLISFLKV*EIWSAL Trigger: AAGGGCGGACCAGATTTCTCAAACCTTGAGAAATGA...GATGAGGAGAAGGATGGAGCAGCCAGTGTCTACAGTTAAAGATTGCCAAGTGTA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| CDS-3UTR GCA 90 bp | ACATTAGAGCTGCTCTGCCTCCTGTGCAAACCATATCTGAATGTGATCTTTACACACCCAGGGGTCAGCTaGATATTCAGACTCCAAAGT | + |
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Preference number: 4 (lower is better) Translates to: TLELLCLLCKPYLNVIFTHPGVS*IFRLQS Trigger: ACTTTGGAGTCTGAATATGCAGCTGACCCCTGGGTG...TGTAAAGATCACATTCAGATATGGTTTGCACAGGAGGCAGAGCAGCTCTAATGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000127382.2 |
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| CDS-3UTR CCA 90 bp | CTGCTCTGCCTCCTGTGCAAACCATATCTGAATGTGATCTTTACAACCATATTGAGTTTTCTCTGCATTTaGTCTTGCACCCAGGGGTCA | + |
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Preference number: 4 (lower is better) Translates to: LLCLLCKPYLNVIFTTILSFLCI*SCTQGS Trigger: TGACCCCTGGGTGCAAGACCAAATGCAGAGAAAACT...CAATATGGTTGTAAAGATCACATTCAGATATGGTTTGCACAGGAGGCAGAGCAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| CDS-3UTR TCA 90 bp | ATTAGAGCTGCTCTGCCTCCTGTGCAAACCATATCTGAATGTGATCTTTACAACCTTCGTGTAGTTCCCTaGGATTTCTGCTCCACTAAA | + |
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Preference number: 4 (lower is better) Translates to: IRAALPPVQTISECDLYNLRVVP*DFCSTK Trigger: TTTAGTGGAGCAGAAATCTCAGGGAACTACACGAAG...GTTGTAAAGATCACATTCAGATATGGTTTGCACAGGAGGCAGAGCAGCTCTAAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| CDS-3UTR GCA 90 bp | ACTTGGCAATCTTTAACTGTAGACACTGGCTGCTCCATCCTTCTCCTCATCAACAGTCCAACAGTTTGCTaGATCTCTCTTGGTTTTTGT | + |
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Preference number: 4 (lower is better) Translates to: TWQSLTVDTGCSILLLINSPTVC*ISLGFC Trigger: ACAAAAACCAAGAGAGATGCAGCAAACTGTTGGACT...GTTGATGAGGAGAAGGATGGAGCAGCCAGTGTCTACAGTTAAAGATTGCCAAGT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020578.11 |
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| CDS-3UTR GCA 90 bp | TACACTTGGCAATCTTTAACTGTAGACACTGGCTGCTCCATCCTTCTCCTCATCAGAAGTCCAACAGTTTaGTGCATCTCTCTTGGTTTT | + |
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Preference number: 4 (lower is better) Translates to: YTWQSLTVDTGCSILLLIRSPTV*CISLGF Trigger: AAAACCAAGAGAGATGCAGCAAACTGTTGGACTTCT...GATGAGGAGAAGGATGGAGCAGCCAGTGTCTACAGTTAAAGATTGCCAAGTGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020578.11 |
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| CDS-3UTR GCA 90 bp | CTGCAGAGCAGTAAAAGTTATCATCTATCCACATTAGAGCTGCTCTGCCTCCTGAATGTAAGTTTTCTCTaGATTTGGTCTTGCACCCAG | + |
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Preference number: 4 (lower is better) Translates to: LQSSKSYHLSTLELLCLLNVSFL*IWSCTQ Trigger: CTGGGTGCAAGACCAAATGCAGAGAAAACTTACATT...CAGGAGGCAGAGCAGCTCTAATGTGGATAGATGATAACTTTTACTGCTCTGCAG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| CDS-3UTR CCA 90 bp | TTAACTGTAGACACTGGCTGCTCCATCCTTCTCCTCATCAACTGCATTAAGTTGTTGCTGCATCTCTCTTaGTTTTTGTCAGGACAATGC | + |
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Preference number: 4 (lower is better) Translates to: LTVDTGCSILLLINCIKLLLHLS*FLSGQC Trigger: GCATTGTCCTGACAAAAACCAAGAGAGATGCAGCAA...CAACTTAATGCAGTTGATGAGGAGAAGGATGGAGCAGCCAGTGTCTACAGTTAA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000020578.11 |
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| CDS-3UTR CCA 90 bp | AACTTACTGCAGAGCAGTAAAAGTTATCATCTATCCACATTAGAGCTGCTCTGCAGTTTTCTCTGCATTTaGTCTTGCACCCAGGGGTCA | + |
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Preference number: 4 (lower is better) Translates to: NLLQSSKSYHLSTLELLCSFLCI*SCTQGS Trigger: TGACCCCTGGGTGCAAGACCAAATGCAGAGAAAACT...GCAGAGCAGCTCTAATGTGGATAGATGATAACTTTTACTGCTCTGCAGTAAGTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| CDS-3UTR GCA 90 bp | CTGCTCTGCCTCCTGTGCAAACCATATCTGAATGTGATCTTTACAACCATATTGTTTTTGTCAGGACAATaGGGACCATTTTTCTGTCCT | + |
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Preference number: 4 (lower is better) Translates to: LLCLLCKPYLNVIFTTILFLSGQ*GPFFCP Trigger: AGGACAGAAAAATGGTCCGCATTGTCCTGACAAAAA...CAATATGGTTGTAAAGATCACATTCAGATATGGTTTGCACAGGAGGCAGAGCAG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000020578.11 |
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| CDS-3UTR GCA 90 bp | ACATTAGAGCTGCTCTGCCTCCTGTGCAAACCATATCTGAATGTGATCTTTACAAATGTAAGTTTTCTCTaGATTTGGTCTTGCACCCAG | + |
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Preference number: 4 (lower is better) Translates to: TLELLCLLCKPYLNVIFTNVSFL*IWSCTQ Trigger: CTGGGTGCAAGACCAAATGCAGAGAAAACTTACATT...TGTAAAGATCACATTCAGATATGGTTTGCACAGGAGGCAGAGCAGCTCTAATGT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| CDS-3UTR CCA 90 bp | TCTTTAACTGTAGACACTGGCTGCTCCATCCTTCTCCTCATCAACTGCATTAAGCCAGGATTTTCTTTCTaGAATCGCTCTAATGTAAGT | + |
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Preference number: 4 (lower is better) Translates to: SLTVDTGCSILLLINCIKPGFSF*NRSNVS Trigger: ACTTACATTAGAGCGATTCCAGAAAGAAAATCCTGG...CTTAATGCAGTTGATGAGGAGAAGGATGGAGCAGCCAGTGTCTACAGTTAAAGA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| CDS-3UTR CCA 90 bp | TTAACTGTAGACACTGGCTGCTCCATCCTTCTCCTCATCAACTGCATTAAGTTGCCAGGATTTTCTTTCTaGAATCGCTCTAATGTAAGT | + |
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Preference number: 4 (lower is better) Translates to: LTVDTGCSILLLINCIKLPGFSF*NRSNVS Trigger: ACTTACATTAGAGCGATTCCAGAAAGAAAATCCTGG...CAACTTAATGCAGTTGATGAGGAGAAGGATGGAGCAGCCAGTGTCTACAGTTAA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| CDS GCA 90 bp | AGTTTCCCCTTGAGGATCTCGCGGCCACCCACGGCCAGAGCCACGTaGCGACTCTGCAGGCCGCACTGGATGTCCTGCGCGCGAGTGCCG | + |
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Preference number: 5 (lower is better) Translates to: SFPLRISRPPTARAT*RLCRPHWMSCARVP Trigger: CGGCACTCGCGCGCAGGACATCCAGTGCGGCCTGCAGAGTCGGCACGTGGCTCTGGCCGTGGGTGGCCGCGAGATCCTCAAGGGGAAACT 69% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| CDS-3UTR CAA 90 bp | GACACTGGCTGCTCCATCCTTCTCCTCATCAACTGCATTAAGTTGCCAGCACCTGAGAAGTCCAACAGTTaGCTGCATCTCTCTTGGTTT | + |
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Preference number: 5 (lower is better) Translates to: DTGCSILLLINCIKLPAPEKSNS*LHLSWF Trigger: AAACCAAGAGAGATGCAGCAAACTGTTGGACTTCTC...AGGTGCTGGCAACTTAATGCAGTTGATGAGGAGAAGGATGGAGCAGCCAGTGTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000020578.11 |
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| CDS-3UTR CAA 90 bp | CTGCAGAGCAGTAAAAGTTATCATCTATCCACATTAGAGCTGCTCTGCCTCCTGAAGTTTTCTCTGCATTaGGTCTTGCACCCAGGGGTC | + |
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Preference number: 5 (lower is better) Translates to: LQSSKSYHLSTLELLCLLKFSLH*VLHPGV Trigger: GACCCCTGGGTGCAAGACCAAATGCAGAGAAAACTT...CAGGAGGCAGAGCAGCTCTAATGTGGATAGATGATAACTTTTACTGCTCTGCAG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| CDS-3UTR CAA 90 bp | ACTTGGCAATCTTTAACTGTAGACACTGGCTGCTCCATCCTTCTCCTCATCAACAAGTTTTCTCTGCATTaGGTCTTGCACCCAGGGGTC | + |
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Preference number: 5 (lower is better) Translates to: TWQSLTVDTGCSILLLINKFSLH*VLHPGV Trigger: GACCCCTGGGTGCAAGACCAAATGCAGAGAAAACTT...GTTGATGAGGAGAAGGATGGAGCAGCCAGTGTCTACAGTTAAAGATTGCCAAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| CDS-3UTR CAA 90 bp | ATTTCCAGTTCTGTCCTTTCCGTGAACAGACAAGCATATTTAGACAAAGGGTATTTTGCTGCATCTCTCTaGGTTTTTGTCAGGACAATG | + |
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Preference number: 5 (lower is better) Translates to: ISSSVLSVNRQAYLDKGYFAASL*VFVRTM Trigger: CATTGTCCTGACAAAAACCAAGAGAGATGCAGCAAA...ATACCCTTTGTCTAAATATGCTTGTCTGTTCACGGAAAGGACAGAACTGGAAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020578.11 |
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| CDS GCA 72 bp | TCGCGGCCACCCACGGCCAGAGCCACGTGCCGACTCTaGAGGCCGCACTGGATGTCCTGCGCGCGAGTGCCG | + |
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Preference number: 6 (lower is better) Translates to: SRPPTARATCRL*RPHWMSCARVP Trigger: CGGCACTCGCGCGCAGGACATCCAGTGCGGCCTGCAGAGTCGGCACGTGGCTCTGGCCGTGGGTGGCCGCGA 74% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| CDS GCA 72 bp | TTGAGGATCTCGCGGCCACCCACGGCCAGAGCCACGTaGCGACTCTGCAGGCCGCACTGGATGTCCTGCGCG | + |
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Preference number: 6 (lower is better) Translates to: LRISRPPTARAT*RLCRPHWMSCA Trigger: CGCGCAGGACATCCAGTGCGGCCTGCAGAGTCGGCACGTGGCTCTGGCCGTGGGTGGCCGCGAGATCCTCAA 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| CDS CCA 72 bp | GGCACCTGGACTTCAATGAACACCTCCTCCAGGGTCTaGTACCACTGTCCCCACGGAGTCCCGCAAGGAACC | + |
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Preference number: 6 (lower is better) Translates to: GTWTSMNTSSRV*YHCPHGVPQGT Trigger: GGTTCCTTGCGGGACTCCGTGGGGACAGTGGTACCAGACCCTGGAGGAGGTGTTCATTGAAGTCCAGGTGCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000020578.11 ENSMUST00000127382.2 |
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| CDS GCA 72 bp | TTTTCTCTGCATTTGGTCTTGCACCCAGGGGTCAGCTaGATATTCAGACTCCAAAGTCCATGTTCCTTCATC | + |
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Preference number: 6 (lower is better) Translates to: FSLHLVLHPGVS*IFRLQSPCSFI Trigger: GATGAAGGAACATGGACTTTGGAGTCTGAATATGCAGCTGACCCCTGGGTGCAAGACCAAATGCAGAGAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000127382.2 |
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| CDS CAA 72 bp | GAGAAGTCCAACAGTTTGCTGCATCTCTCTTGGTTTTaGTCAGGACAATGCGGACCATTTTTCTGTCCTCCA | + |
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Preference number: 6 (lower is better) Translates to: EKSNSLLHLSWF*SGQCGPFFCPP Trigger: TGGAGGACAGAAAAATGGTCCGCATTGTCCTGACAAAAACCAAGAGAGATGCAGCAAACTGTTGGACTTCTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000020578.11 |
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