RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NUDCD1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000038736

Ensembl transcript IDs: ENSMUST00000038719.8, ENSMUST00000226606.2, ENSMUST00000227843.2

Found 174 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp TCCTGTTGTACAGCACAGTGGACATGGGGGTGGGCTGCCGATAGATaGATACTCGGCGAAGGCACTCACAAAGGGCTGCATACGAGTAGT +
Preference number: 1 (lower is better)
Translates to: SCCTAQWTWGWAADR*ILGEGTHKGLHTSS
Trigger: ACTACTCGTATGCAGCCCTTTGTGAGTGCCTTCGCCGAGTATTCATCTATCGGCAGCCCACCCCCATGTCCACTGTGCTGTACAACAGGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226606.2
3UTR GCA 90 bp TTGGTTTCTAGGCTTGCTACCTGCTGCTTAGCAACTTGCCCCACATaGCTGCCTTCCTTCCTGTTGTACAGCACAGTGGACATGGGGGTG +
Preference number: 1 (lower is better)
Translates to: LVSRLATCCLATCPT*LPSFLLYSTVDMGV
Trigger: CACCCCCATGTCCACTGTGCTGTACAACAGGAAGGAAGGCAGGCATGTGGGGCAAGTTGCTAAGCAGCAGGTAGCAAGCCTAGAAACCAA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226606.2
3UTR CCA 90 bp TGCTCATTCTGTGCCTTCTCTGATGAGATGGGGTCTCTCAGATCCTaGAGCTCACGGGTTCGGATCAACTGTGTGGACGGCAATGATGCT +
Preference number: 1 (lower is better)
Translates to: CSFCAFSDEMGSLRS*SSRVRINCVDGNDA
Trigger: AGCATCATTGCCGTCCACACAGTTGATCCGAACCCGTGAGCTCCAGGATCTGAGAGACCCCATCTCATCAGAGAAGGCACAGAATGAGCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR GCA 90 bp ATAGGATCATTGGTTTCTAGGCTTGCTACCTGCTGCTTAGCAACTTaGCCCACATGCCTGCCTTCCTTCCTGTTGTACAGCACAGTGGAC +
Preference number: 1 (lower is better)
Translates to: IGSLVSRLATCCLAT*PTCLPSFLLYSTVD
Trigger: GTCCACTGTGCTGTACAACAGGAAGGAAGGCAGGCATGTGGGGCAAGTTGCTAAGCAGCAGGTAGCAAGCCTAGAAACCAATGATCCTAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226606.2
3UTR GCA 90 bp CGAAAGGACCCAGATGTAGCTGTCTCTTGCAAACACAGAAGTGGATaGTCACAGTCAGCTAATGGATGGATCACAGGGCTCCCAATGGAG +
Preference number: 1 (lower is better)
Translates to: RKDPDVAVSCKHRSG*SQSANGWITGLPME
Trigger: CTCCATTGGGAGCCCTGTGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCAAGAGACAGCTACATCTGGGTCCTTTCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR CCA 90 bp TCCTGCTTGCTGCAGTGTGGTTGCCAGAGGAGAGCATCGACATCATaGCGTAGACAGAAGCACGGCATTTCTTTAGGATCCACAATGACT +
Preference number: 1 (lower is better)
Translates to: SCLLQCGCQRRASTS*RRQKHGISLGSTMT
Trigger: AGTCATTGTGGATCCTAAAGAAATGCCGTGCTTCTGTCTACGCCATGATGTCGATGCTCTCCTCTGGCAACCACACTGCAGCAAGCAGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226606.2
3UTR CCA 90 bp ATTGACATCAAGTGCTTTGCTCATTCTGTGCCTTCTCTGATGAGATaGGGTCTCTCAGATCCTGGAGCTCACGGGTTCGGATCAACTGTG +
Preference number: 1 (lower is better)
Translates to: IDIKCFAHSVPSLMR*GLSDPGAHGFGSTV
Trigger: CACAGTTGATCCGAACCCGTGAGCTCCAGGATCTGAGAGACCCCATCTCATCAGAGAAGGCACAGAATGAGCAAAGCACTTGATGTCAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR CCA 90 bp ATGTTTAAACAGGCAGAGTTTATTACAAGACAAACAGGGCCTCTCTaGAGGATAAGAAGAGCAAGGGCCAAAGCACTGGGAGGGCTGGGG +
Preference number: 1 (lower is better)
Translates to: MFKQAEFITRQTGPL*RIRRARAKALGGLG
Trigger: CCCCAGCCCTCCCAGTGCTTTGGCCCTTGCTCTTCTTATCCTCCAGAGAGGCCCTGTTTGTCTTGTAATAAACTCTGCCTGTTTAAACAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR CCA 90 bp GTGTGGACACTATGCCCCTCCTTAGAAGTGGGAACAAAACAACCATaGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGACGAAAGGAT +
Preference number: 1 (lower is better)
Translates to: VWTLCPSLEVGTKQP*KELQRQSLELRRKD
Trigger: ATCCTTTCGTCTCAGCTCCAAACTTTGTCTCTGTAACTCCTTCCATGGTTGTTTTGTTCCCACTTCTAAGGAGGGGCATAGTGTCCACAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR TCA 90 bp GAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTaGGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACT +
Preference number: 1 (lower is better)
Translates to: EIPSQMDGPGGHHPE*GNTFTKELTQYVLT
Trigger: AGTGAGTACATATTGTGTGAGTTCCTTTGTGAATGTGTTACCTCACTCAGGATGATGCCCTCCAGGTCCATCCATTTGGCTAGGAATTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR TCA 90 bp AAGAGGTTTTTGGTAGTGAGAACAAATAATCTCTCATTTGTTGCCTaGAAGCCTAAAATAGGATCATTGGTTTCTAGGCTTGCTACCTGC +
Preference number: 1 (lower is better)
Translates to: KRFLVVRTNNLSFVA*KPKIGSLVSRLATC
Trigger: GCAGGTAGCAAGCCTAGAAACCAATGATCCTATTTTAGGCTTTCAGGCAACAAATGAGAGATTATTTGTTCTCACTACCAAAAACCTCTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226606.2
3UTR CAA 90 bp CCTAGGGCATTGAAGGTGGCAATGTGCTCCCACATGTCGTCCTGCTaGCTGCAGTGTGGTTGCCAGAGGAGAGCATCGACATCATGGCGT +
Preference number: 2 (lower is better)
Translates to: PRALKVAMCSHMSSC*LQCGCQRRASTSWR
Trigger: ACGCCATGATGTCGATGCTCTCCTCTGGCAACCACACTGCAGCAAGCAGGACGACATGTGGGAGCACATTGCCACCTTCAATGCCCTAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226606.2
3UTR-3UTR GCA 90 bp TGCCCCACATGCCTGCCTTCCTTCCTGTTGTACAGCACAGTGGACATGGGGGTGTTGCTGCAGTGTGGTTaGCAGAGGAGAGCATCGACA +
Preference number: 2 (lower is better)
Translates to: CPTCLPSFLLYSTVDMGVLLQCG*QRRAST
Trigger: TGTCGATGCTCTCCTCTGGCAACCACACTGCAGCAA...CACCCCCATGTCCACTGTGCTGTACAACAGGAAGGAAGGCAGGCATGTGGGGCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226606.2
3UTR-3UTR GCA 90 bp TTAGCAACTTGCCCCACATGCCTGCCTTCCTTCCTGTTGTACAGCACAGTGGACTGTCGTCCTGCTTGCTaGAGTGTGGTTGCCAGAGGA +
Preference number: 2 (lower is better)
Translates to: LATCPTCLPSFLLYSTVDCRPAC*SVVARG
Trigger: TCCTCTGGCAACCACACTGCAGCAAGCAGGACGACA...GTCCACTGTGCTGTACAACAGGAAGGAAGGCAGGCATGTGGGGCAAGTTGCTAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226606.2
3UTR CAA 90 bp GAGGATAAGAAGAGCAAGGGCCAAAGCACTGGGAGGGCTGGGGTGTaGAAGGTGACAATGTGCAAGTGGGCAATGGTCTCTGTAGACTAC +
Preference number: 2 (lower is better)
Translates to: EDKKSKGQSTGRAGV*KVTMCKWAMVSVDY
Trigger: GTAGTCTACAGAGACCATTGCCCACTTGCACATTGTCACCTTCAACACCCCAGCCCTCCCAGTGCTTTGGCCCTTGCTCTTCTTATCCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR-3UTR TCA 90 bp GAAGGTGGCAATGTGCTCCCACATGTCGTCCTGCTTGCTGCAGTGTGGTTGCCAAGGATCCACAATGACTaGGAACAGGTACTGGTTGCT +
Preference number: 2 (lower is better)
Translates to: EGGNVLPHVVLLAAVWLPRIHND*EQVLVA
Trigger: AGCAACCAGTACCTGTTCTCAGTCATTGTGGATCCT...TGGCAACCACACTGCAGCAAGCAGGACGACATGTGGGAGCACATTGCCACCTTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226606.2
3UTR-3UTR TCA 90 bp ATACTCGGCGAAGGCACTCACAAAGGGCTGCATACGAGTAGTTTGGAGCACATGCGTAACCTAGGGCATTaGAGGTGGCAATGTGCTCCC +
Preference number: 2 (lower is better)
Translates to: ILGEGTHKGLHTSSLEHMRNLGH*RWQCAP
Trigger: GGGAGCACATTGCCACCTTCAATGCCCTAGGTTACG...CATGTGCTCCAAACTACTCGTATGCAGCCCTTTGTGAGTGCCTTCGCCGAGTAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226606.2
3UTR-3UTR GCA 90 bp CCTAGGGCATTGAAGGTGGCAATGTGCTCCCACATGTCGTCCTGCTTGCTGCAGACAGGTACTGGTTGCTaGCAAGATTCACCACATGAG +
Preference number: 2 (lower is better)
Translates to: PRALKVAMCSHMSSCLLQTGTGC*QDSPHE
Trigger: CTCATGTGGTGAATCTTGGCAGCAACCAGTACCTGT...CTGCAGCAAGCAGGACGACATGTGGGAGCACATTGCCACCTTCAATGCCCTAGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226606.2
3UTR-3UTR GCA 90 bp CTGCTTAGCAACTTGCCCCACATGCCTGCCTTCCTTCCTGTTGTACAGCACAGTACATGTCGTCCTGCTTaGTGCAGTGTGGTTGCCAGA +
Preference number: 2 (lower is better)
Translates to: LLSNLPHMPAFLPVVQHSTCRPA*CSVVAR
Trigger: TCTGGCAACCACACTGCAGCAAGCAGGACGACATGT...ACTGTGCTGTACAACAGGAAGGAAGGCAGGCATGTGGGGCAAGTTGCTAAGCAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226606.2
3UTR-3UTR CCA 90 bp CTGCTTAGCAACTTGCCCCACATGCCTGCCTTCCTTCCTGTTGTACAGCACAGTACTGAGAACAGGTACTaGTTGCTGCCAAGATTCACC +
Preference number: 2 (lower is better)
Translates to: LLSNLPHMPAFLPVVQHSTENRY*LLPRFT
Trigger: GGTGAATCTTGGCAGCAACCAGTACCTGTTCTCAGT...ACTGTGCTGTACAACAGGAAGGAAGGCAGGCATGTGGGGCAAGTTGCTAAGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226606.2
3UTR-3UTR TCA 90 bp CACAGTGGACATGGGGGTGGGCTGCCGATAGATGAATACTCGGCGAAGGCACTCCATTCTTCTAATTCTTaGGCATTACATGCAGGCTTT +
Preference number: 2 (lower is better)
Translates to: HSGHGGGLPIDEYSAKALHSSNS*ALHAGF
Trigger: AAAGCCTGCATGTAATGCTCAAGAATTAGAAGAATG...GAGTGCCTTCGCCGAGTATTCATCTATCGGCAGCCCACCCCCATGTCCACTGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226606.2
3UTR-3UTR GCA 90 bp CCCTCACAGGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCGAAGTGTGGACACTATaGCCCTCCTTAGAAGTGGGA +
Preference number: 2 (lower is better)
Translates to: PSQEFMKFLAKWMDLEGIEVWTL*PSLEVG
Trigger: TCCCACTTCTAAGGAGGGGCATAGTGTCCACACTTC...GATGCCCTCCAGGTCCATCCATTTGGCTAGGAATTTCATAAATTCCTGTGAGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR-3UTR CCA 90 bp CCCTCACAGGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCCCTTCTCTGATGAGATaGGGTCTCTCAGATCCTGGA +
Preference number: 2 (lower is better)
Translates to: PSQEFMKFLAKWMDLEGIPSLMR*GLSDPG
Trigger: TCCAGGATCTGAGAGACCCCATCTCATCAGAGAAGG...GATGCCCTCCAGGTCCATCCATTTGGCTAGGAATTTCATAAATTCCTGTGAGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR-3UTR CCA 90 bp CCATTGGACACGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAAAATTGAAGGAAGTTTaGAGAGGAAGTCTGAACCAC +
Preference number: 2 (lower is better)
Translates to: PLDTQTLYAPVQGNARAKKLKEV*RGSLNH
Trigger: GTGGTTCAGACTTCCTCTCCAAACTTCCTTCAATTT...TTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGG
48% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR-3UTR GCA 90 bp CTGCTTAGCAACTTGCCCCACATGCCTGCCTTCCTTCCTGTTGTACAGCACAGTTATTGCCATCAAATCTaGATAAACTGGAGCTCTCTT +
Preference number: 2 (lower is better)
Translates to: LLSNLPHMPAFLPVVQHSYCHQI*INWSSL
Trigger: AAGAGAGCTCCAGTTTATGCAGATTTGATGGCAATA...ACTGTGCTGTACAACAGGAAGGAAGGCAGGCATGTGGGGCAAGTTGCTAAGCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226606.2
3UTR-3UTR TCA 90 bp TGGCGCCTTTGTTTTTCACTAGAAACCCTCACAGGAATTTATGAAATTCCTAGCAGCGACCATGCTCAGTaGGCTACACTGGTAGCTAAC +
Preference number: 2 (lower is better)
Translates to: WRLCFSLETLTGIYEIPSSDHAQ*ATLVAN
Trigger: GTTAGCTACCAGTGTAGCTCACTGAGCATGGTCGCT...GCTAGGAATTTCATAAATTCCTGTGAGGGTTTCTAGTGAAAAACAAAGGCGCCA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR-3UTR CCA 90 bp CCCTCACAGGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCCCCTCCAGGTACCACTaGATACTTTTTAGACAAATG +
Preference number: 2 (lower is better)
Translates to: PSQEFMKFLAKWMDLEGIPSRYH*ILFRQM
Trigger: CATTTGTCTAAAAAGTATCCAGTGGTACCTGGAGGG...GATGCCCTCCAGGTCCATCCATTTGGCTAGGAATTTCATAAATTCCTGTGAGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR-3UTR CCA 90 bp ATTACAAGACAAACAGGGCCTCTCTGGAGGATAAGAAGAGCAAGGGCCAAAGCAGTCCTTATGCTTATGTaGCAAACACTTTACCAACAG +
Preference number: 2 (lower is better)
Translates to: ITRQTGPLWRIRRARAKAVLMLM*QTLYQQ
Trigger: CTGTTGGTAAAGTGTTTGCCACATAAGCATAAGGAC...TGCTTTGGCCCTTGCTCTTCTTATCCTCCAGAGAGGCCCTGTTTGTCTTGTAAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR-3UTR TCA 90 bp GAAGGGAAGAGGTTGTGGCGCCTTTGTTTTTCACTAGAAACCCTCACAGGAATTGAAACTCAAGAAAAATaGAGACTGAAGTGTGGACAC +
Preference number: 2 (lower is better)
Translates to: EGKRLWRLCFSLETLTGIETQEK*RLKCGH
Trigger: GTGTCCACACTTCAGTCTTCATTTTTCTTGAGTTTC...AATTCCTGTGAGGGTTTCTAGTGAAAAACAAAGGCGCCACAACCTCTTCCCTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR-3UTR GCA 90 bp CCCTCACAGGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATGTGCATGTTTGTATaGATGCATATGAGGACCAAA +
Preference number: 2 (lower is better)
Translates to: PSQEFMKFLAKWMDLEGIMCMFV*MHMRTK
Trigger: TTTGGTCCTCATATGCATGCATACAAACATGCACAT...GATGCCCTCCAGGTCCATCCATTTGGCTAGGAATTTCATAAATTCCTGTGAGGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR-3UTR TCA 90 bp ATATTTAATGTGGGTGACAGGGATCTAAACTCTGGTCCTTATGCTTATGTGGCAAAAATCTATTCTGTGTaGCTGTCCCAACAAGGGCTC +
Preference number: 2 (lower is better)
Translates to: IFNVGDRDLNSGPYAYVAKIYSV*LSQQGL
Trigger: GAGCCCTTGTTGGGACAGTCACACAGAATAGATTTT...TGCCACATAAGCATAAGGACCAGAGTTTAGATCCCTGTCACCCACATTAAATAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR-3UTR GCA 90 bp GAAGGGAAGAGGTTGTGGCGCCTTTGTTTTTCACTAGAAACCCTCACAGGAATTAATATTGACATCAAGTaGTTTGCTCATTCTGTGCCT +
Preference number: 2 (lower is better)
Translates to: EGKRLWRLCFSLETLTGINIDIK*FAHSVP
Trigger: AGGCACAGAATGAGCAAAGCACTTGATGTCAATATT...AATTCCTGTGAGGGTTTCTAGTGAAAAACAAAGGCGCCACAACCTCTTCCCTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR-3UTR GCA 90 bp GAAGGGAAGAGGTTGTGGCGCCTTTGTTTTTCACTAGAAACCCTCACAGGAATTGTTTATGAGACTATGTaGATGTTTGTATGCATGCAT +
Preference number: 2 (lower is better)
Translates to: EGKRLWRLCFSLETLTGIVYETM*MFVCMH
Trigger: ATGCATGCATACAAACATGCACATAGTCTCATAAAC...AATTCCTGTGAGGGTTTCTAGTGAAAAACAAAGGCGCCACAACCTCTTCCCTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR TCA 72 bp ACAGCACAGTGGACATGGGGGTGGGCTGCCGATAGATaGATACTCGGCGAAGGCACTCACAAAGGGCTGCAT +
Preference number: 3 (lower is better)
Translates to: TAQWTWGWAADR*ILGEGTHKGLH
Trigger: ATGCAGCCCTTTGTGAGTGCCTTCGCCGAGTATTCATCTATCGGCAGCCCACCCCCATGTCCACTGTGCTGT
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000226606.2
3UTR GCA 72 bp GCATTGAAGGTGGCAATGTGCTCCCACATGTCGTCCTaGTTGCTGCAGTGTGGTTGCCAGAGGAGAGCATCG +
Preference number: 3 (lower is better)
Translates to: ALKVAMCSHMSS*LLQCGCQRRAS
Trigger: CGATGCTCTCCTCTGGCAACCACACTGCAGCAAGCAGGACGACATGTGGGAGCACATTGCCACCTTCAATGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226606.2
3UTR CCA 72 bp TGTGCCTTCTCTGATGAGATGGGGTCTCTCAGATCCTaGAGCTCACGGGTTCGGATCAACTGTGTGGACGGC +
Preference number: 3 (lower is better)
Translates to: CAFSDEMGSLRS*SSRVRINCVDG
Trigger: GCCGTCCACACAGTTGATCCGAACCCGTGAGCTCCAGGATCTGAGAGACCCCATCTCATCAGAGAAGGCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR GCA 72 bp AGGTGGCAATGTGCTCCCACATGTCGTCCTGCTTGCTaGAGTGTGGTTGCCAGAGGAGAGCATCGACATCAT +
Preference number: 3 (lower is better)
Translates to: RWQCAPTCRPAC*SVVARGEHRHH
Trigger: ATGATGTCGATGCTCTCCTCTGGCAACCACACTGCAGCAAGCAGGACGACATGTGGGAGCACATTGCCACCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226606.2
3UTR GCA 72 bp AGGCTTGCTACCTGCTGCTTAGCAACTTGCCCCACATaGCTGCCTTCCTTCCTGTTGTACAGCACAGTGGAC +
Preference number: 3 (lower is better)
Translates to: RLATCCLATCPT*LPSFLLYSTVD
Trigger: GTCCACTGTGCTGTACAACAGGAAGGAAGGCAGGCATGTGGGGCAAGTTGCTAAGCAGCAGGTAGCAAGCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226606.2
3UTR-3UTR CAA 90 bp GATGAATACTCGGCGAAGGCACTCACAAAGGGCTGCATACGAGTAGTTTGGAGCCACATGTCGTCCTGCTaGCTGCAGTGTGGTTGCCAG +
Preference number: 3 (lower is better)
Translates to: DEYSAKALTKGCIRVVWSHMSSC*LQCGCQ
Trigger: CTGGCAACCACACTGCAGCAAGCAGGACGACATGTG...GCTCCAAACTACTCGTATGCAGCCCTTTGTGAGTGCCTTCGCCGAGTATTCATC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226606.2
3UTR GCA 72 bp TTGGTTTCTAGGCTTGCTACCTGCTGCTTAGCAACTTaGCCCACATGCCTGCCTTCCTTCCTGTTGTACAGC +
Preference number: 3 (lower is better)
Translates to: LVSRLATCCLAT*PTCLPSFLLYS
Trigger: GCTGTACAACAGGAAGGAAGGCAGGCATGTGGGGCAAGTTGCTAAGCAGCAGGTAGCAAGCCTAGAAACCAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226606.2
3UTR GCA 72 bp TGGAAAGAGAGACCCATTGGACACGCAAACTTTATATaGCCCAGTACAGGGGAACGCCAGGGCCAAAAAGGG +
Preference number: 3 (lower is better)
Translates to: WKERPIGHANFI*PSTGERQGQKG
Trigger: CCCTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGGGTCTCTCTTTCCA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR CCA 72 bp CTGCAGTGTGGTTGCCAGAGGAGAGCATCGACATCATaGCGTAGACAGAAGCACGGCATTTCTTTAGGATCC +
Preference number: 3 (lower is better)
Translates to: LQCGCQRRASTS*RRQKHGISLGS
Trigger: GGATCCTAAAGAAATGCCGTGCTTCTGTCTACGCCATGATGTCGATGCTCTCCTCTGGCAACCACACTGCAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226606.2
3UTR CCA 72 bp AAGTGCTTTGCTCATTCTGTGCCTTCTCTGATGAGATaGGGTCTCTCAGATCCTGGAGCTCACGGGTTCGGA +
Preference number: 3 (lower is better)
Translates to: KCFAHSVPSLMR*GLSDPGAHGFG
Trigger: TCCGAACCCGTGAGCTCCAGGATCTGAGAGACCCCATCTCATCAGAGAAGGCACAGAATGAGCAAAGCACTT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR-3UTR CAA 90 bp TGCCCCACATGCCTGCCTTCCTTCCTGTTGTACAGCACAGTGGACATGGGGGTGATTTCTTGTCTCTCTTaGAGGCTTGGACGTAACCTA +
Preference number: 3 (lower is better)
Translates to: CPTCLPSFLLYSTVDMGVISCLS*RLGRNL
Trigger: TAGGTTACGTCCAAGCCTCAAAGAGAGACAAGAAAT...CACCCCCATGTCCACTGTGCTGTACAACAGGAAGGAAGGCAGGCATGTGGGGCA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226606.2
3UTR GCA 72 bp CCTAAAATAGGATCATTGGTTTCTAGGCTTGCTACCTaGTGCTTAGCAACTTGCCCCACATGCCTGCCTTCC +
Preference number: 3 (lower is better)
Translates to: PKIGSLVSRLAT*CLATCPTCLPS
Trigger: GGAAGGCAGGCATGTGGGGCAAGTTGCTAAGCAGCAGGTAGCAAGCCTAGAAACCAATGATCCTATTTTAGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000226606.2
3UTR GCA 72 bp GGAATTCCAGGCCAGCCTGTGCTACATAGTGAGAGCTaGCTCCAAAATGTGATCCTAGACAAGACAGTACCA +
Preference number: 3 (lower is better)
Translates to: GIPGQPVLHSES*LQNVILDKTVP
Trigger: TGGTACTGTCTTGTCTAGGATCACATTTTGGAGGCAGCTCTCACTATGTAGCACAGGCTGGCCTGGAATTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR GCA 72 bp CCAGATGTAGCTGTCTCTTGCAAACACAGAAGTGGATaGTCACAGTCAGCTAATGGATGGATCACAGGGCTC +
Preference number: 3 (lower is better)
Translates to: PDVAVSCKHRSG*SQSANGWITGL
Trigger: GAGCCCTGTGATCCATCCATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCAAGAGACAGCTACATCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR CCA 72 bp GGAGCTCTTGACTCTAGCTGCATATGTATCAAAAGATaGCCTAGTCGGCCATCACTGGAAAGAGAGACCCAT +
Preference number: 3 (lower is better)
Translates to: GALDSSCICIKR*PSRPSLERETH
Trigger: ATGGGTCTCTCTTTCCAGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR-3UTR CAA 90 bp GAAGGGAAGAGGTTGTGGCGCCTTTGTTTTTCACTAGAAACCCTCACAGGAATTAGTACCCCGGAGCTCTaGACTCTAGCTGCATATGTA +
Preference number: 3 (lower is better)
Translates to: EGKRLWRLCFSLETLTGISTPEL*TLAAYV
Trigger: TACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACT...AATTCCTGTGAGGGTTTCTAGTGAAAAACAAAGGCGCCACAACCTCTTCCCTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR-3UTR CAA 90 bp TTAGCAACTTGCCCCACATGCCTGCCTTCCTTCCTGTTGTACAGCACAGTGGACGATTCACCACATGAGTaGTTTGTAATGTATTGCCAT +
Preference number: 3 (lower is better)
Translates to: LATCPTCLPSFLLYSTVDDSPHE*FVMYCH
Trigger: ATGGCAATACATTACAAACAACTCATGTGGTGAATC...GTCCACTGTGCTGTACAACAGGAAGGAAGGCAGGCATGTGGGGCAAGTTGCTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226606.2
3UTR-3UTR CAA 90 bp GAAGGGAAGAGGTTGTGGCGCCTTTGTTTTTCACTAGAAACCCTCACAGGAATTCTTCTTCTTACTCTTTaGTCTCCTTGCTTGGCCTCC +
Preference number: 3 (lower is better)
Translates to: EGKRLWRLCFSLETLTGILLLTL*SPCLAS
Trigger: GGAGGCCAAGCAAGGAGACAAAAGAGTAAGAAGAAG...AATTCCTGTGAGGGTTTCTAGTGAAAAACAAAGGCGCCACAACCTCTTCCCTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR-3UTR CAA 90 bp CCCTCACAGGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCAGATGTAGCTGTCTCTaGCAAACACAGAAGTGGATG +
Preference number: 3 (lower is better)
Translates to: PSQEFMKFLAKWMDLEGIRCSCL*QTQKWM
Trigger: CATCCACTTCTGTGTTTGCAAGAGACAGCTACATCT...GATGCCCTCCAGGTCCATCCATTTGGCTAGGAATTTCATAAATTCCTGTGAGGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR TCA 72 bp ACAGAAGCACGGCATTTCTTTAGGATCCACAATGACTaGGAACAGGTACTGGTTGCTGCCAAGATTCACCAC +
Preference number: 3 (lower is better)
Translates to: TEARHFFRIHND*EQVLVAAKIHH
Trigger: GTGGTGAATCTTGGCAGCAACCAGTACCTGTTCTCAGTCATTGTGGATCCTAAAGAAATGCCGTGCTTCTGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226606.2
3UTR CCA 72 bp AGGCTCATTAGGATTAACCCTGAAGGGAAGAGGTTGTaGCGCCTTTGTTTTTCACTAGAAACCCTCACAGGA +
Preference number: 3 (lower is better)
Translates to: RLIRINPEGKRL*RLCFSLETLTG
Trigger: TCCTGTGAGGGTTTCTAGTGAAAAACAAAGGCGCCACAACCTCTTCCCTTCAGGGTTAATCCTAATGAGCCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR TCA 72 bp AACCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTaGGACGAAAGGATGGACCATGTAGAGACTGCCATA +
Preference number: 3 (lower is better)
Translates to: NHGRSYRDKVWS*DERMDHVETAI
Trigger: TATGGCAGTCTCTACATGGTCCATCCTTTCGTCTCAGCTCCAAACTTTGTCTCTGTAACTCCTTCCATGGTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR TCA 72 bp AGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTaGGGTAACACATTCACAAAGGAACTCACACAATAT +
Preference number: 3 (lower is better)
Translates to: SQMDGPGGHHPE*GNTFTKELTQY
Trigger: ATATTGTGTGAGTTCCTTTGTGAATGTGTTACCTCACTCAGGATGATGCCCTCCAGGTCCATCCATTTGGCT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR CCA 72 bp AAACCCTCACAGGAATTTATGAAATTCCTAGCCAAATaGATGGACCTGGAGGGCATCATCCTGAGTGAGGTA +
Preference number: 3 (lower is better)
Translates to: KPSQEFMKFLAK*MDLEGIILSEV
Trigger: TACCTCACTCAGGATGATGCCCTCCAGGTCCATCCATTTGGCTAGGAATTTCATAAATTCCTGTGAGGGTTT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR TCA 72 bp CTTGCTAAACACATGAAACTCAAGAAAAATGAAGACTaGAGTGTGGACACTATGCCCCTCCTTAGAAGTGGG +
Preference number: 3 (lower is better)
Translates to: LAKHMKLKKNED*SVDTMPLLRSG
Trigger: CCCACTTCTAAGGAGGGGCATAGTGTCCACACTTCAGTCTTCATTTTTCTTGAGTTTCATGTGTTTAGCAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR GCA 72 bp AGATTTTATCGAAAGGACCCAGATGTAGCTGTCTCTTaGAAACACAGAAGTGGATGCTCACAGTCAGCTAAT +
Preference number: 3 (lower is better)
Translates to: RFYRKDPDVAVS*KHRSGCSQSAN
Trigger: ATTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCAAGAGACAGCTACATCTGGGTCCTTTCGATAAAATCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR TCA 72 bp TGCATGTTTGTATGCATGCATATGAGGACCAAATATTaGCATCAAGTGCTTTGCTCATTCTGTGCCTTCTCT +
Preference number: 3 (lower is better)
Translates to: CMFVCMHMRTKY*HQVLCSFCAFS
Trigger: AGAGAAGGCACAGAATGAGCAAAGCACTTGATGTCAATATTTGGTCCTCATATGCATGCATACAAACATGCA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR TCA 72 bp TTGGTAGTGAGAACAAATAATCTCTCATTTGTTGCCTaGAAGCCTAAAATAGGATCATTGGTTTCTAGGCTT +
Preference number: 3 (lower is better)
Translates to: LVVRTNNLSFVA*KPKIGSLVSRL
Trigger: AAGCCTAGAAACCAATGATCCTATTTTAGGCTTTCAGGCAACAAATGAGAGATTATTTGTTCTCACTACCAA
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000226606.2
3UTR CAA 72 bp TTAGCAACTTGCCCCACATGCCTGCCTTCCTTCCTGTaGTACAGCACAGTGGACATGGGGGTGGGCTGCCGA +
Preference number: 4 (lower is better)
Translates to: LATCPTCLPSFL*YSTVDMGVGCR
Trigger: TCGGCAGCCCACCCCCATGTCCACTGTGCTGTACAACAGGAAGGAAGGCAGGCATGTGGGGCAAGTTGCTAA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000226606.2
3UTR CAA 72 bp TTGAAGGTGGCAATGTGCTCCCACATGTCGTCCTGCTaGCTGCAGTGTGGTTGCCAGAGGAGAGCATCGACA +
Preference number: 4 (lower is better)
Translates to: LKVAMCSHMSSC*LQCGCQRRAST
Trigger: TGTCGATGCTCTCCTCTGGCAACCACACTGCAGCAAGCAGGACGACATGTGGGAGCACATTGCCACCTTCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000226606.2
CDS-3UTR TCA 90 bp CCCTCACAGGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCCGTAACCTAGGGCATTaGAGGTGGCAATGTGCTCCC +
Preference number: 4 (lower is better)
Translates to: PSQEFMKFLAKWMDLEGIRNLGH*RWQCAP
Trigger: GGGAGCACATTGCCACCTTCAATGCCCTAGGTTACG...GATGCCCTCCAGGTCCATCCATTTGGCTAGGAATTTCATAAATTCCTGTGAGGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS-3UTR CCA 90 bp CAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGACAAATGTTGGAGGACAGCACAGTGGACATaGGGGTGGGCTGCCGATAGA +
Preference number: 4 (lower is better)
Translates to: QLFSPPGTTGYFLDKCWRTAQWT*GWAADR
Trigger: TCTATCGGCAGCCCACCCCCATGTCCACTGTGCTGT...CCTCCAACATTTGTCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR TCA 90 bp CAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGACAAATGTTGGAGGCGTAACCTAGGGCATTaGAGGTGGCAATGTGCTCCC +
Preference number: 4 (lower is better)
Translates to: QLFSPPGTTGYFLDKCWRRNLGH*RWQCAP
Trigger: GGGAGCACATTGCCACCTTCAATGCCCTAGGTTACG...CCTCCAACATTTGTCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp ATTACAAGACAAACAGGGCCTCTCTGGAGGATAAGAAGAGCAAGGGCCAAAGCATTGCTGCAGTGTGGTTaGCAGAGGAGAGCATCGACA +
Preference number: 4 (lower is better)
Translates to: ITRQTGPLWRIRRARAKALLQCG*QRRAST
Trigger: TGTCGATGCTCTCCTCTGGCAACCACACTGCAGCAA...TGCTTTGGCCCTTGCTCTTCTTATCCTCCAGAGAGGCCCTGTTTGTCTTGTAAT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp GAAGGGAAGAGGTTGTGGCGCCTTTGTTTTTCACTAGAAACCCTCACAGGAATTTCCCACATGTCGTCCTaGTTGCTGCAGTGTGGTTGC +
Preference number: 4 (lower is better)
Translates to: EGKRLWRLCFSLETLTGISHMSS*LLQCGC
Trigger: GCAACCACACTGCAGCAAGCAGGACGACATGTGGGA...AATTCCTGTGAGGGTTTCTAGTGAAAAACAAAGGCGCCACAACCTCTTCCCTTC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp CAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGACAAATGTTGGAGGGCAACTTGCCCCACATaGCTGCCTTCCTTCCTGTTG +
Preference number: 4 (lower is better)
Translates to: QLFSPPGTTGYFLDKCWRATCPT*LPSFLL
Trigger: CAACAGGAAGGAAGGCAGGCATGTGGGGCAAGTTGC...CCTCCAACATTTGTCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp CTCTGGTCCTTATGCTTATGTGGCAAACACTTTACCAACAGAGCAATCTCCCCAGCAACTTGCCCCACATaGCTGCCTTCCTTCCTGTTG +
Preference number: 4 (lower is better)
Translates to: LWSLCLCGKHFTNRAISPATCPT*LPSFLL
Trigger: CAACAGGAAGGAAGGCAGGCATGTGGGGCAAGTTGC...TGGGGAGATTGCTCTGTTGGTAAAGTGTTTGCCACATAAGCATAAGGACCAGAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp CAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGACAAATGTTGGAGGTGCTGCTTAGCAACTTaGCCCACATGCCTGCCTTCC +
Preference number: 4 (lower is better)
Translates to: QLFSPPGTTGYFLDKCWRCCLAT*PTCLPS
Trigger: GGAAGGCAGGCATGTGGGGCAAGTTGCTAAGCAGCA...CCTCCAACATTTGTCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp CAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGACAAATGTTGGAGGACATGTCGTCCTGCTTaGTGCAGTGTGGTTGCCAGA +
Preference number: 4 (lower is better)
Translates to: QLFSPPGTTGYFLDKCWRTCRPA*CSVVAR
Trigger: TCTGGCAACCACACTGCAGCAAGCAGGACGACATGT...CCTCCAACATTTGTCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp CCCTCACAGGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCGCACTCACAAAGGGCTaGATACGAGTAGTTTGGAGC +
Preference number: 4 (lower is better)
Translates to: PSQEFMKFLAKWMDLEGIALTKG*IRVVWS
Trigger: GCTCCAAACTACTCGTATGCAGCCCTTTGTGAGTGC...GATGCCCTCCAGGTCCATCCATTTGGCTAGGAATTTCATAAATTCCTGTGAGGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp CTCTGGTCCTTATGCTTATGTGGCAAACACTTTACCAACAGAGCAATCTCCCCACTTGCCCCACATGCCTaGCTTCCTTCCTGTTGTACA +
Preference number: 4 (lower is better)
Translates to: LWSLCLCGKHFTNRAISPLAPHA*LPSCCT
Trigger: TGTACAACAGGAAGGAAGGCAGGCATGTGGGGCAAG...TGGGGAGATTGCTCTGTTGGTAAAGTGTTTGCCACATAAGCATAAGGACCAGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp CTCTGGTCCTTATGCTTATGTGGCAAACACTTTACCAACAGAGCAATCTCCCCAGTGCATCAAGCGTTCTaGTATTGCAGCACATTGGGC +
Preference number: 4 (lower is better)
Translates to: LWSLCLCGKHFTNRAISPVHQAF*YCSTLG
Trigger: GCCCAATGTGCTGCAATAGCAGAACGCTTGATGCAC...TGGGGAGATTGCTCTGTTGGTAAAGTGTTTGCCACATAAGCATAAGGACCAGAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp CAAGTTATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGACTGTCGTCCTGCTTGCTaGAGTGTGGTTGCCAGAGGA +
Preference number: 4 (lower is better)
Translates to: QVIVQLFSPPGTTGYFLDCRPAC*SVVARG
Trigger: TCCTCTGGCAACCACACTGCAGCAAGCAGGACGACA...GTCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATAACTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp CAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGACAAATGTTGGAGGGCACTCACAAAGGGCTaGATACGAGTAGTTTGGAGC +
Preference number: 4 (lower is better)
Translates to: QLFSPPGTTGYFLDKCWRALTKG*IRVVWS
Trigger: GCTCCAAACTACTCGTATGCAGCCCTTTGTGAGTGC...CCTCCAACATTTGTCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR CCA 90 bp ATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGAGAAGGGGATGTGAAATaGATAGATGCACAAAGACGA +
Preference number: 4 (lower is better)
Translates to: ITGLPMEELEKVPKELKGEGDVK*IDAQRR
Trigger: TCGTCTTTGTGCATCTATCCATTTCACATCCCCTTC...TCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS-3UTR CCA 90 bp CCCTCACAGGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCACTGAGAACAGGTACTaGTTGCTGCCAAGATTCACC +
Preference number: 4 (lower is better)
Translates to: PSQEFMKFLAKWMDLEGITENRY*LLPRFT
Trigger: GGTGAATCTTGGCAGCAACCAGTACCTGTTCTCAGT...GATGCCCTCCAGGTCCATCCATTTGGCTAGGAATTTCATAAATTCCTGTGAGGG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS-3UTR TCA 90 bp CTCTGGTCCTTATGCTTATGTGGCAAACACTTTACCAACAGAGCAATCTCCCCAGGTCACCTGTTCCAATaGCATACAGTCTTCCAGTTC +
Preference number: 4 (lower is better)
Translates to: LWSLCLCGKHFTNRAISPGHLFQ*HTVFQF
Trigger: GAACTGGAAGACTGTATGTCATTGGAACAGGTGACC...TGGGGAGATTGCTCTGTTGGTAAAGTGTTTGCCACATAAGCATAAGGACCAGAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS-3UTR TCA 90 bp CAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGACAAATGTTGGAGGAGGATCCACAATGACTaGGAACAGGTACTGGTTGCT +
Preference number: 4 (lower is better)
Translates to: QLFSPPGTTGYFLDKCWRRIHND*EQVLVA
Trigger: AGCAACCAGTACCTGTTCTCAGTCATTGTGGATCCT...CCTCCAACATTTGTCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp TGGCGCCTTTGTTTTTCACTAGAAACCCTCACAGGAATTTATGAAATTCCTAGCTGTCGTCCTGCTTGCTaGAGTGTGGTTGCCAGAGGA +
Preference number: 4 (lower is better)
Translates to: WRLCFSLETLTGIYEIPSCRPAC*SVVARG
Trigger: TCCTCTGGCAACCACACTGCAGCAAGCAGGACGACA...GCTAGGAATTTCATAAATTCCTGTGAGGGTTTCTAGTGAAAAACAAAGGCGCCA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp AACTTATCAAGTTATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTCCCACATGTCGTCCTaGTTGCTGCAGTGTGGTTGC +
Preference number: 4 (lower is better)
Translates to: NLSSYSTTVQPSRYHWILSHMSS*LLQCGC
Trigger: GCAACCACACTGCAGCAAGCAGGACGACATGTGGGA...AAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATAACTTGATAAGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp CAAGTTATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGACTTGAAGGTGGCAATGTaGTCCCACATGTCGTCCTGC +
Preference number: 4 (lower is better)
Translates to: QVIVQLFSPPGTTGYFLDLKVAM*SHMSSC
Trigger: GCAGGACGACATGTGGGAGCACATTGCCACCTTCAA...GTCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATAACTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp CAAGTTATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGACCTTGCCCCACATGCCTaGCTTCCTTCCTGTTGTACA +
Preference number: 4 (lower is better)
Translates to: QVIVQLFSPPGTTGYFLDLAPHA*LPSCCT
Trigger: TGTACAACAGGAAGGAAGGCAGGCATGTGGGGCAAG...GTCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATAACTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp AACTTATCAAGTTATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTGCTGCTTAGCAACTTaGCCCACATGCCTGCCTTCC +
Preference number: 4 (lower is better)
Translates to: NLSSYSTTVQPSRYHWILCCLAT*PTCLPS
Trigger: GGAAGGCAGGCATGTGGGGCAAGTTGCTAAGCAGCA...AAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATAACTTGATAAGTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR TCA 90 bp CAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGACAAATGTTGGAGGTGCTTTCTGGAAGCCTaGCCGTTACTGTCAAATCAT +
Preference number: 4 (lower is better)
Translates to: QLFSPPGTTGYFLDKCWRCFLEA*PLLSNH
Trigger: ATGATTTGACAGTAACGGTCAGGCTTCCAGAAAGCA...CCTCCAACATTTGTCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp TATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGACAAATGTTGCTGCAGTGTGGTTaGCAGAGGAGAGCATCGACA +
Preference number: 4 (lower is better)
Translates to: YSTTVQPSRYHWILFRQMLLQCG*QRRAST
Trigger: TGTCGATGCTCTCCTCTGGCAACCACACTGCAGCAA...CATTTGTCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp TCAAGTTATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGATTGAAGGTGGCAATGTaGTCCCACATGTCGTCCTGC +
Preference number: 4 (lower is better)
Translates to: SSYSTTVQPSRYHWILFRLKVAM*SHMSSC
Trigger: GCAGGACGACATGTGGGAGCACATTGCCACCTTCAA...TCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATAACTTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp TATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGACAAATGTCTAGGCTTGCTACCTaGTGCTTAGCAACTTGCCCC +
Preference number: 4 (lower is better)
Translates to: YSTTVQPSRYHWILFRQMSRLAT*CLATCP
Trigger: GGGGCAAGTTGCTAAGCAGCAGGTAGCAAGCCTAGA...CATTTGTCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp TCAAGTTATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGATCTAGGCTTGCTACCTaGTGCTTAGCAACTTGCCCC +
Preference number: 4 (lower is better)
Translates to: SSYSTTVQPSRYHWILFRSRLAT*CLATCP
Trigger: GGGGCAAGTTGCTAAGCAGCAGGTAGCAAGCCTAGA...TCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATAACTTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR CCA 90 bp ATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGATTCCTTATCTGGATTTaGATTCAGTTCATCAGAGGT +
Preference number: 4 (lower is better)
Translates to: ITGLPMEELEKVPKELKGFLIWI*IQFIRG
Trigger: ACCTCTGATGAACTGAATCCAAATCCAGATAAGGAA...TCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS-3UTR CCA 90 bp CTGCTTGCTGTAAAACAAGGGTTGAAAGCAAATATTGTCAAAACTGCTGTATTCACAGCACAGTGGACATaGGGGTGGGCTGCCGATAGA +
Preference number: 4 (lower is better)
Translates to: LLAVKQGLKANIVKTAVFTAQWT*GWAADR
Trigger: TCTATCGGCAGCCCACCCCCATGTCCACTGTGCTGT...GAATACAGCAGTTTTGACAATATTTGCTTTCAACCCTTGTTTTACAGCAAGCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS-3UTR TCA 90 bp CAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGACAAATGTTGGAGGACAGAGGTTCTACTTTaGTTTTCTCTGGCCTGTCTT +
Preference number: 4 (lower is better)
Translates to: QLFSPPGTTGYFLDKCWRTEVLL*FSLACL
Trigger: AAGACAGGCCAGAGAAAATCAAAGTAGAACCTCTGT...CCTCCAACATTTGTCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp TCAAGTTATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGATACTTCTGCCACAGCTaGATCAAGCTCCAGCTGGTA +
Preference number: 4 (lower is better)
Translates to: SSYSTTVQPSRYHWILFRYFCHS*IKLQLV
Trigger: TACCAGCTGGAGCTTGATGCAGCTGTGGCAGAAGTA...TCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATAACTTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp ATATTTAATGTGGGTGACAGGGATCTAAACTCTGGTCCTTATGCTTATGTGGCATACTTCTGCCACAGCTaGATCAAGCTCCAGCTGGTA +
Preference number: 4 (lower is better)
Translates to: IFNVGDRDLNSGPYAYVAYFCHS*IKLQLV
Trigger: TACCAGCTGGAGCTTGATGCAGCTGTGGCAGAAGTA...TGCCACATAAGCATAAGGACCAGAGTTTAGATCCCTGTCACCCACATTAAATAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp AACTTATCAAGTTATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTGTGCATCAAGCGTTCTaGTATTGCAGCACATTGGGC +
Preference number: 4 (lower is better)
Translates to: NLSSYSTTVQPSRYHWILVHQAF*YCSTLG
Trigger: GCCCAATGTGCTGCAATAGCAGAACGCTTGATGCAC...AAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATAACTTGATAAGTT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp CCCTCACAGGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCTTCTTGAGCATTACATaGAGGCTTTTCCTTATCTGG +
Preference number: 4 (lower is better)
Translates to: PSQEFMKFLAKWMDLEGIFLSIT*RLFLIW
Trigger: CCAGATAAGGAAAAGCCTGCATGTAATGCTCAAGAA...GATGCCCTCCAGGTCCATCCATTTGGCTAGGAATTTCATAAATTCCTGTGAGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR CAA 72 bp ACAAAACAACCATGGAAGGAGTTACAGAGACAAAGTTaGGAGCTGAGACGAAAGGATGGACCATGTAGAGAC +
Preference number: 4 (lower is better)
Translates to: TKQPWKELQRQS*ELRRKDGPCRD
Trigger: GTCTCTACATGGTCCATCCTTTCGTCTCAGCTCCAAACTTTGTCTCTGTAACTCCTTCCATGGTTGTTTTGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS-3UTR TCA 90 bp TCAAGTTATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGAGGTCACCTGTTCCAATaGCATACAGTCTTCCAGTTC +
Preference number: 4 (lower is better)
Translates to: SSYSTTVQPSRYHWILFRGHLFQ*HTVFQF
Trigger: GAACTGGAAGACTGTATGTCATTGGAACAGGTGACC...TCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATAACTTGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR TCA 90 bp AACTTATCAAGTTATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTAGCATAATGTGGCACTaGCTTTCCACGGAGAACATG +
Preference number: 4 (lower is better)
Translates to: NLSSYSTTVQPSRYHWILSIMWH*LSTENM
Trigger: CATGTTCTCCGTGGAAAGTCAGTGCCACATTATGCT...AAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATAACTTGATAAGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR TCA 90 bp ATATTTAATGTGGGTGACAGGGATCTAAACTCTGGTCCTTATGCTTATGTGGCAAGCATAATGTGGCACTaGCTTTCCACGGAGAACATG +
Preference number: 4 (lower is better)
Translates to: IFNVGDRDLNSGPYAYVASIMWH*LSTENM
Trigger: CATGTTCTCCGTGGAAAGTCAGTGCCACATTATGCT...TGCCACATAAGCATAAGGACCAGAGTTTAGATCCCTGTCACCCACATTAAATAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS-3UTR TCA 90 bp ATTACAAGACAAACAGGGCCTCTCTGGAGGATAAGAAGAGCAAGGGCCAAAGCACATTCTTCTAATTCTTaGGCATTACATGCAGGCTTT +
Preference number: 4 (lower is better)
Translates to: ITRQTGPLWRIRRARAKAHSSNS*ALHAGF
Trigger: AAAGCCTGCATGTAATGCTCAAGAATTAGAAGAATG...TGCTTTGGCCCTTGCTCTTCTTATCCTCCAGAGAGGCCCTGTTTGTCTTGTAAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS-3UTR TCA 90 bp TATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGACAAATGAGGATCCACAATGACTaGGAACAGGTACTGGTTGCT +
Preference number: 4 (lower is better)
Translates to: YSTTVQPSRYHWILFRQMRIHND*EQVLVA
Trigger: AGCAACCAGTACCTGTTCTCAGTCATTGTGGATCCT...CATTTGTCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR TCA 90 bp CTCTGGTCCTTATGCTTATGTGGCAAACACTTTACCAACAGAGCAATCTCCCCACTCTCATTTGTTGCCTaGAAGCCTAAAATAGGATCA +
Preference number: 4 (lower is better)
Translates to: LWSLCLCGKHFTNRAISPLSFVA*KPKIGS
Trigger: TGATCCTATTTTAGGCTTTCAGGCAACAAATGAGAG...TGGGGAGATTGCTCTGTTGGTAAAGTGTTTGCCACATAAGCATAAGGACCAGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp TATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGACAAATGACAGGTACTGGTTGCTaGCAAGATTCACCACATGAG +
Preference number: 4 (lower is better)
Translates to: YSTTVQPSRYHWILFRQMTGTGC*QDSPHE
Trigger: CTCATGTGGTGAATCTTGGCAGCAACCAGTACCTGT...CATTTGTCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp CTGCTTGCTGTAAAACAAGGGTTGAAAGCAAATATTGTCAAAACTGCTGTATTCACATGTCGTCCTGCTTaGTGCAGTGTGGTTGCCAGA +
Preference number: 4 (lower is better)
Translates to: LLAVKQGLKANIVKTAVFTCRPA*CSVVAR
Trigger: TCTGGCAACCACACTGCAGCAAGCAGGACGACATGT...GAATACAGCAGTTTTGACAATATTTGCTTTCAACCCTTGTTTTACAGCAAGCAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS-3UTR CCA 90 bp CAAGTTATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGACCTTAGTACTGCTTTCTaGAAGCCTGACCGTTACTGT +
Preference number: 4 (lower is better)
Translates to: QVIVQLFSPPGTTGYFLDLSTAF*KPDRYC
Trigger: ACAGTAACGGTCAGGCTTCCAGAAAGCAGTACTAAG...GTCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATAACTTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR CCA 90 bp AACTTATCAAGTTATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTACTGAGAACAGGTACTaGTTGCTGCCAAGATTCACC +
Preference number: 4 (lower is better)
Translates to: NLSSYSTTVQPSRYHWILTENRY*LLPRFT
Trigger: GGTGAATCTTGGCAGCAACCAGTACCTGTTCTCAGT...AAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATAACTTGATAAGTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR TCA 90 bp TCAAGTTATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGATGCTTTCTGGAAGCCTaGCCGTTACTGTCAAATCAT +
Preference number: 4 (lower is better)
Translates to: SSYSTTVQPSRYHWILFRCFLEA*PLLSNH
Trigger: ATGATTTGACAGTAACGGTCAGGCTTCCAGAAAGCA...TCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATAACTTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp AACTTATCAAGTTATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTCGAAGTTTTACTTCTaGCACAGCTGCATCAAGCTC +
Preference number: 4 (lower is better)
Translates to: NLSSYSTTVQPSRYHWILSKFYF*HSCIKL
Trigger: GAGCTTGATGCAGCTGTGGCAGAAGTAAAACTTCGA...AAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATAACTTGATAAGTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp TGGCGCCTTTGTTTTTCACTAGAAACCCTCACAGGAATTTATGAAATTCCTAGCTCGAAGTTTTACTTCTaGCACAGCTGCATCAAGCTC +
Preference number: 4 (lower is better)
Translates to: WRLCFSLETLTGIYEIPSSKFYF*HSCIKL
Trigger: GAGCTTGATGCAGCTGTGGCAGAAGTAAAACTTCGA...GCTAGGAATTTCATAAATTCCTGTGAGGGTTTCTAGTGAAAAACAAAGGCGCCA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp TCAAGTTATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGAAGAACAGGTACTGGTTaGTGCCAAGATTCACCACAT +
Preference number: 4 (lower is better)
Translates to: SSYSTTVQPSRYHWILFRRTGTG*CQDSPH
Trigger: ATGTGGTGAATCTTGGCAGCAACCAGTACCTGTTCT...TCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATAACTTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp ATATTTAATGTGGGTGACAGGGATCTAAACTCTGGTCCTTATGCTTATGTGGCAAGAACAGGTACTGGTTaGTGCCAAGATTCACCACAT +
Preference number: 4 (lower is better)
Translates to: IFNVGDRDLNSGPYAYVARTGTG*CQDSPH
Trigger: ATGTGGTGAATCTTGGCAGCAACCAGTACCTGTTCT...TGCCACATAAGCATAAGGACCAGAGTTTAGATCCCTGTCACCCACATTAAATAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS-3UTR CCA 90 bp ATATTTAATGTGGGTGACAGGGATCTAAACTCTGGTCCTTATGCTTATGTGGCACTTAGTACTGCTTTCTaGAAGCCTGACCGTTACTGT +
Preference number: 4 (lower is better)
Translates to: IFNVGDRDLNSGPYAYVALSTAF*KPDRYC
Trigger: ACAGTAACGGTCAGGCTTCCAGAAAGCAGTACTAAG...TGCCACATAAGCATAAGGACCAGAGTTTAGATCCCTGTCACCCACATTAAATAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR CAA 72 bp GTGCATGTTTGTATGCATGCATATGAGGACCAAATATaGACATCAAGTGCTTTGCTCATTCTGTGCCTTCTC +
Preference number: 4 (lower is better)
Translates to: VHVCMHAYEDQI*TSSALLILCLL
Trigger: GAGAAGGCACAGAATGAGCAAAGCACTTGATGTCAATATTTGGTCCTCATATGCATGCATACAAACATGCAC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS-3UTR TCA 90 bp CAAGTTATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGACCTCTCATTTGTTGCCTaGAAGCCTAAAATAGGATCA +
Preference number: 4 (lower is better)
Translates to: QVIVQLFSPPGTTGYFLDLSFVA*KPKIGS
Trigger: TGATCCTATTTTAGGCTTTCAGGCAACAAATGAGAG...GTCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATAACTTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR CCA 90 bp TCAAGTTATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGAGAAGGGGATGTGAAATaGATAGATGCACAAAGACGA +
Preference number: 4 (lower is better)
Translates to: SSYSTTVQPSRYHWILFREGDVK*IDAQRR
Trigger: TCGTCTTTGTGCATCTATCCATTTCACATCCCCTTC...TCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATAACTTGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR TCA 90 bp TATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGACAAATGAATACAGAGGTTCTTTaGTTTTCTCTGGCCTGTCTT +
Preference number: 4 (lower is better)
Translates to: YSTTVQPSRYHWILFRQMNTEVL*FSLACL
Trigger: AAGACAGGCCAGAGAAAATCAAAGAACCTCTGTATT...CATTTGTCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000038719.8
CDS-3UTR GCA 90 bp AACTTATCAAGTTATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTAAGACGATTGTCATATaGTGTCACATCTGTAGGAAG +
Preference number: 4 (lower is better)
Translates to: NLSSYSTTVQPSRYHWILKTIVI*CHICRK
Trigger: CTTCCTACAGATGTGACAGCATATGACAATCGTCTT...AAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATAACTTGATAAGTT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp TGGCGCCTTTGTTTTTCACTAGAAACCCTCACAGGAATTTATGAAATTCCTAGCAAGACGATTGTCATATaGTGTCACATCTGTAGGAAG +
Preference number: 4 (lower is better)
Translates to: WRLCFSLETLTGIYEIPSKTIVI*CHICRK
Trigger: CTTCCTACAGATGTGACAGCATATGACAATCGTCTT...GCTAGGAATTTCATAAATTCCTGTGAGGGTTTCTAGTGAAAAACAAAGGCGCCA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp TCAAGTTATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGATTCTTGAGCATTACATaGAGGCTTTTCCTTATCTGG +
Preference number: 4 (lower is better)
Translates to: SSYSTTVQPSRYHWILFRFLSIT*RLFLIW
Trigger: CCAGATAAGGAAAAGCCTGCATGTAATGCTCAAGAA...TCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATAACTTGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR CCA 90 bp CAAGTTATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGACTTCCTTATCTGGATTTaGATTCAGTTCATCAGAGGT +
Preference number: 4 (lower is better)
Translates to: QVIVQLFSPPGTTGYFLDFLIWI*IQFIRG
Trigger: ACCTCTGATGAACTGAATCCAAATCCAGATAAGGAA...GTCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATAACTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR CCA 90 bp CAAGTTATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGACAGGCTTTTCCTTATCTaGATTTGGATTCAGTTCATC +
Preference number: 4 (lower is better)
Translates to: QVIVQLFSPPGTTGYFLDRLFLI*IWIQFI
Trigger: GATGAACTGAATCCAAATCCAGATAAGGAAAAGCCT...GTCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATAACTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
3UTR CAA 72 bp ACTTTACCAACAGAGCAATCTCCCCAGACCAAATACTaGTTTAATCTAATCCAGGCAGGTATTTGTTCCAGA +
Preference number: 4 (lower is better)
Translates to: TLPTEQSPQTKY*FNLIQAGICSR
Trigger: TCTGGAACAAATACCTGCCTGGATTAGATTAAACAAGTATTTGGTCTGGGGAGATTGCTCTGTTGGTAAAGT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS-3UTR TCA 90 bp AACTTATCAAGTTATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTCATTCTTCTAATTCTTaGGCATTACATGCAGGCTTT +
Preference number: 4 (lower is better)
Translates to: NLSSYSTTVQPSRYHWILHSSNS*ALHAGF
Trigger: AAAGCCTGCATGTAATGCTCAAGAATTAGAAGAATG...AAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATAACTTGATAAGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp CAAGTTATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGACTACATCCCAAAAGCATaGATGTGTTCTAATGTATAC +
Preference number: 4 (lower is better)
Translates to: QVIVQLFSPPGTTGYFLDYIPKA*MCSNVY
Trigger: GTATACATTAGAACACATGCATGCTTTTGGGATGTA...GTCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATAACTTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp AACTTATCAAGTTATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTATTGCCATCAAATCTaGATAAACTGGAGCTCTCTT +
Preference number: 4 (lower is better)
Translates to: NLSSYSTTVQPSRYHWILYCHQI*INWSSL
Trigger: AAGAGAGCTCCAGTTTATGCAGATTTGATGGCAATA...AAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATAACTTGATAAGTT
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR CCA 90 bp TATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGACAAATGTTTCCTTCCAAAACTTaGATATCCTTCAGCTTAATG +
Preference number: 4 (lower is better)
Translates to: YSTTVQPSRYHWILFRQMFPSKT*ISFSLM
Trigger: CATTAAGCTGAAGGATATCCAAGTTTTGGAAGGAAA...CATTTGTCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR GCA 90 bp CTGCTTGCTGTAAAACAAGGGTTGAAAGCAAATATTGTCAAAACTGCTGTATTCTATTGCCATCAAATCTaGATAAACTGGAGCTCTCTT +
Preference number: 4 (lower is better)
Translates to: LLAVKQGLKANIVKTAVFYCHQI*INWSSL
Trigger: AAGAGAGCTCCAGTTTATGCAGATTTGATGGCAATA...GAATACAGCAGTTTTGACAATATTTGCTTTCAACCCTTGTTTTACAGCAAGCAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
3UTR CAA 72 bp GAAAATAAAAACACAACAATCCATACTGGATACAAATaGAAGGAAGTTTGGAGAGGAAGTCTGAACCACAAA +
Preference number: 4 (lower is better)
Translates to: ENKNTTIHTGYK*KEVWRGSLNHK
Trigger: TTTGTGGTTCAGACTTCCTCTCCAAACTTCCTTCAATTTGTATCCAGTATGGATTGTTGTGTTTTTATTTTC
35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS-3UTR CAA 90 bp CCATTGGACACGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAACACATGTCGTCCTGCTaGCTGCAGTGTGGTTGCCAG +
Preference number: 5 (lower is better)
Translates to: PLDTQTLYAPVQGNARAKHMSSC*LQCGCQ
Trigger: CTGGCAACCACACTGCAGCAAGCAGGACGACATGTG...TTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS-3UTR CAA 90 bp CCATTGGACACGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAAGAGAACAGGTACTGGTaGCTGCCAAGATTCACCACA +
Preference number: 5 (lower is better)
Translates to: PLDTQTLYAPVQGNARAKENRYW*LPRFTT
Trigger: TGTGGTGAATCTTGGCAGCAACCAGTACCTGTTCTC...TTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS-3UTR CAA 90 bp CCCTCACAGGAATTTATGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCCTGCTGCTTAGCAACTaGCCCCACATGCCTGCCTTC +
Preference number: 5 (lower is better)
Translates to: PSQEFMKFLAKWMDLEGILLLSN*PHMPAF
Trigger: GAAGGCAGGCATGTGGGGCAAGTTGCTAAGCAGCAG...GATGCCCTCCAGGTCCATCCATTTGGCTAGGAATTTCATAAATTCCTGTGAGGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS-3UTR CAA 90 bp CAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGACAAATGTTGGAGGCACATGTCGTCCTGCTaGCTGCAGTGTGGTTGCCAG +
Preference number: 5 (lower is better)
Translates to: QLFSPPGTTGYFLDKCWRHMSSC*LQCGCQ
Trigger: CTGGCAACCACACTGCAGCAAGCAGGACGACATGTG...CCTCCAACATTTGTCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR CAA 90 bp CAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGACAAATGTTGGAGGCTGCCTTCCTTCCTGTaGTACAGCACAGTGGACATG +
Preference number: 5 (lower is better)
Translates to: QLFSPPGTTGYFLDKCWRLPSFL*YSTVDM
Trigger: CATGTCCACTGTGCTGTACAACAGGAAGGAAGGCAG...CCTCCAACATTTGTCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR CAA 90 bp GAAGGGAAGAGGTTGTGGCGCCTTTGTTTTTCACTAGAAACCCTCACAGGAATTCTGCCTTCCTTCCTGTaGTACAGCACAGTGGACATG +
Preference number: 5 (lower is better)
Translates to: EGKRLWRLCFSLETLTGILPSFL*YSTVDM
Trigger: CATGTCCACTGTGCTGTACAACAGGAAGGAAGGCAG...AATTCCTGTGAGGGTTTCTAGTGAAAAACAAAGGCGCCACAACCTCTTCCCTTC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS-3UTR CAA 90 bp CAAGTTATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGACCTGCTGCTTAGCAACTaGCCCCACATGCCTGCCTTC +
Preference number: 5 (lower is better)
Translates to: QVIVQLFSPPGTTGYFLDLLLSN*PHMPAF
Trigger: GAAGGCAGGCATGTGGGGCAAGTTGCTAAGCAGCAG...GTCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATAACTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS TCA 90 bp TCCACGGTCACCTGTTCCAATGACATACAGTCTTCCAGTTCCATCTaGCAAGGTAACCCAGGAAGGGGATGTGAAATGGATAGATGCACA +
Preference number: 5 (lower is better)
Translates to: STVTCSNDIQSSSSI*QGNPGRGCEMDRCT
Trigger: TGTGCATCTATCCATTTCACATCCCCTTCCTGGGTTACCTTGTCAGATGGAACTGGAAGACTGTATGTCATTGGAACAGGTGACCGTGGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS CCA 90 bp TCATCAGAGGTCAGGTGCATCAAGCGTTCTGCTATTGCAGCACATTaGGCAGGGTCTCTTAAAAGTTCACCTTGTTTATCACCAACCACC +
Preference number: 5 (lower is better)
Translates to: SSEVRCIKRSAIAAH*AGSLKSSPCLSPTT
Trigger: GGTGGTTGGTGATAAACAAGGTGAACTTTTAAGAGACCCTGCCCAATGTGCTGCAATAGCAGAACGCTTGATGCACCTGACCTCTGATGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR CAA 90 bp ATCACAGGGCTCCCAATGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGGGACAAATCATCCTCACTTaGTTGCCAGTAATACAGAGG +
Preference number: 5 (lower is better)
Translates to: ITGLPMEELEKVPKELKGQIILT*LPVIQR
Trigger: CCTCTGTATTACTGGCAACAAAGTGAGGATGATTTG...TCCCTTTAGCTCCTTGGGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS-3UTR CAA 90 bp CCATTGGACACGCAAACTTTATATGCCCCAGTACAGGGGAACGCCAGGGCCAAATTTCCTTATCTGGATTaGGATTCAGTTCATCAGAGG +
Preference number: 5 (lower is better)
Translates to: PLDTQTLYAPVQGNARAKFPYLD*DSVHQR
Trigger: CCTCTGATGAACTGAATCCAAATCCAGATAAGGAAA...TTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS CCA 90 bp CTTCCAGTTCCATCTGACAAGGTAACCCAGGAAGGGGATGTGAAATaGATAGATGCACAAAGACGATTGTCATATGCTGTCACATCTGTA +
Preference number: 5 (lower is better)
Translates to: LPVPSDKVTQEGDVK*IDAQRRLSYAVTSV
Trigger: TACAGATGTGACAGCATATGACAATCGTCTTTGTGCATCTATCCATTTCACATCCCCTTCCTGGGTTACCTTGTCAGATGGAACTGGAAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR CAA 90 bp CAAGTTATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGACGTAGTAGACACTGTCTaGATACCAGGCATCACAGTG +
Preference number: 5 (lower is better)
Translates to: QVIVQLFSPPGTTGYFLDVVDTV*IPGITV
Trigger: CACTGTGATGCCTGGTATCAAGACAGTGTCTACTAC...GTCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATAACTTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR CAA 90 bp TCAAGTTATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGAGAGAACAGGTACTGGTaGCTGCCAAGATTCACCACA +
Preference number: 5 (lower is better)
Translates to: SSYSTTVQPSRYHWILFRENRYW*LPRFTT
Trigger: TGTGGTGAATCTTGGCAGCAACCAGTACCTGTTCTC...TCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATAACTTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR CAA 90 bp CTCTGGTCCTTATGCTTATGTGGCAAACACTTTACCAACAGAGCAATCTCCCCACCTAAAATAGGATCATaGGTTTCTAGGCTTGCTACC +
Preference number: 5 (lower is better)
Translates to: LWSLCLCGKHFTNRAISPPKIGS*VSRLAT
Trigger: GGTAGCAAGCCTAGAAACCAATGATCCTATTTTAGG...TGGGGAGATTGCTCTGTTGGTAAAGTGTTTGCCACATAAGCATAAGGACCAGAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS-3UTR CAA 90 bp CAAGTTATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGACGATGCACAAAGACGATaGTCATATGCTGTCACATCT +
Preference number: 5 (lower is better)
Translates to: QVIVQLFSPPGTTGYFLDDAQRR*SYAVTS
Trigger: AGATGTGACAGCATATGACAATCGTCTTTGTGCATC...GTCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATAACTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR CAA 90 bp CAAGTTATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGACCAAATCATCCTCACTTaGTTGCCAGTAATACAGAGG +
Preference number: 5 (lower is better)
Translates to: QVIVQLFSPPGTTGYFLDQIILT*LPVIQR
Trigger: CCTCTGTATTACTGGCAACAAAGTGAGGATGATTTG...GTCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATAACTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR CAA 90 bp CAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGACAAATGTTGGAGGGATTCACCACATGAGTaGTTTGTAATGTATTGCCAT +
Preference number: 5 (lower is better)
Translates to: QLFSPPGTTGYFLDKCWRDSPHE*FVMYCH
Trigger: ATGGCAATACATTACAAACAACTCATGTGGTGAATC...CCTCCAACATTTGTCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR CAA 90 bp ATATTTAATGTGGGTGACAGGGATCTAAACTCTGGTCCTTATGCTTATGTGGCAGATGCACAAAGACGATaGTCATATGCTGTCACATCT +
Preference number: 5 (lower is better)
Translates to: IFNVGDRDLNSGPYAYVADAQRR*SYAVTS
Trigger: AGATGTGACAGCATATGACAATCGTCTTTGTGCATC...TGCCACATAAGCATAAGGACCAGAGTTTAGATCCCTGTCACCCACATTAAATAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS-3UTR CAA 90 bp AACTTATCAAGTTATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTATTTCTTGTCTCTCTTaGAGGCTTGGACGTAACCTA +
Preference number: 5 (lower is better)
Translates to: NLSSYSTTVQPSRYHWILISCLS*RLGRNL
Trigger: TAGGTTACGTCCAAGCCTCAAAGAGAGACAAGAAAT...AAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATAACTTGATAAGTT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR CAA 90 bp AACTTATCAAGTTATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTCCTAAAATAGGATCATaGGTTTCTAGGCTTGCTACC +
Preference number: 5 (lower is better)
Translates to: NLSSYSTTVQPSRYHWILPKIGS*VSRLAT
Trigger: GGTAGCAAGCCTAGAAACCAATGATCCTATTTTAGG...AAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATAACTTGATAAGTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR CAA 90 bp TATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGACAAATGTTTCCTTATCTGGATTaGGATTCAGTTCATCAGAGG +
Preference number: 5 (lower is better)
Translates to: YSTTVQPSRYHWILFRQMFPYLD*DSVHQR
Trigger: CCTCTGATGAACTGAATCCAAATCCAGATAAGGAAA...CATTTGTCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS-3UTR CAA 90 bp CAAGTTATAGTACAACTGTTCAGCCCTCCAGGTACCACTGGATACTTTTTAGACGATTCACCACATGAGTaGTTTGTAATGTATTGCCAT +
Preference number: 5 (lower is better)
Translates to: QVIVQLFSPPGTTGYFLDDSPHE*FVMYCH
Trigger: ATGGCAATACATTACAAACAACTCATGTGGTGAATC...GTCTAAAAAGTATCCAGTGGTACCTGGAGGGCTGAACAGTTGTACTATAACTTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS CCA 90 bp ATCAGGCAAAAATTGTATTTGAATATCTTCCTTAGTACTGCTTTCTaGAAGCCTGACCGTTACTGTCAAATCATCCTCACTTTGTTGCCA +
Preference number: 5 (lower is better)
Translates to: IRQKLYLNIFLSTAF*KPDRYCQIILTLLP
Trigger: TGGCAACAAAGTGAGGATGATTTGACAGTAACGGTCAGGCTTCCAGAAAGCAGTACTAAGGAAGATATTCAAATACAATTTTTGCCTGAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS TCA 90 bp ATCATTCTCTTTAATTGTCCATGTGCTGCCTTCGTGATCAATAGATaGATAGAGTTTTCCTTCCAAAACTTGGATATCCTTCAGCTTAAT +
Preference number: 5 (lower is better)
Translates to: IILFNCPCAAFVINR*IEFSFQNLDILQLN
Trigger: ATTAAGCTGAAGGATATCCAAGTTTTGGAAGGAAAACTCTATTCATCTATTGATCACGAAGGCAGCACATGGACAATTAAAGAGAATGAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS CAA 90 bp GTAACCCAGGAAGGGGATGTGAAATGGATAGATGCACAAAGACGATaGTCATATGCTGTCACATCTGTAGGAAGGCGGAACACCTCTCGG +
Preference number: 6 (lower is better)
Translates to: VTQEGDVKWIDAQRR*SYAVTSVGRRNTSR
Trigger: CCGAGAGGTGTTCCGCCTTCCTACAGATGTGACAGCATATGACAATCGTCTTTGTGCATCTATCCATTTCACATCCCCTTCCTGGGTTAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS GCA 72 bp TGTGAAATGGATAGATGCACAAAGACGATTGTCATATaGTGTCACATCTGTAGGAAGGCGGAACACCTCTCG +
Preference number: 6 (lower is better)
Translates to: CEMDRCTKTIVI*CHICRKAEHLS
Trigger: CGAGAGGTGTTCCGCCTTCCTACAGATGTGACAGCATATGACAATCGTCTTTGTGCATCTATCCATTTCACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS GCA 72 bp TTATCTGGATTTGGATTCAGTTCATCAGAGGTCAGGTaGATCAAGCGTTCTGCTATTGCAGCACATTGGGCA +
Preference number: 6 (lower is better)
Translates to: LSGFGFSSSEVR*IKRSAIAAHWA
Trigger: TGCCCAATGTGCTGCAATAGCAGAACGCTTGATGCACCTGACCTCTGATGAACTGAATCCAAATCCAGATAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS CCA 72 bp GTCAGGTGCATCAAGCGTTCTGCTATTGCAGCACATTaGGCAGGGTCTCTTAAAAGTTCACCTTGTTTATCA +
Preference number: 6 (lower is better)
Translates to: VRCIKRSAIAAH*AGSLKSSPCLS
Trigger: TGATAAACAAGGTGAACTTTTAAGAGACCCTGCCCAATGTGCTGCAATAGCAGAACGCTTGATGCACCTGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS CAA 72 bp GAAGGGGATGTGAAATGGATAGATGCACAAAGACGATaGTCATATGCTGTCACATCTGTAGGAAGGCGGAAC +
Preference number: 6 (lower is better)
Translates to: EGDVKWIDAQRR*SYAVTSVGRRN
Trigger: GTTCCGCCTTCCTACAGATGTGACAGCATATGACAATCGTCTTTGTGCATCTATCCATTTCACATCCCCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS CAA 90 bp GCTTTCTGGAAGCCTGACCGTTACTGTCAAATCATCCTCACTTTGTaGCCAGTAATACAGAGGTTCTTTGATTTTCTCTGGCCTGTCTTC +
Preference number: 6 (lower is better)
Translates to: AFWKPDRYCQIILTL*PVIQRFFDFLWPVF
Trigger: GAAGACAGGCCAGAGAAAATCAAAGAACCTCTGTATTACTGGCAACAAAGTGAGGATGATTTGACAGTAACGGTCAGGCTTCCAGAAAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038719.8
CDS CAA 90 bp ACTGCTTTCTGGAAGCCTGACCGTTACTGTCAAATCATCCTCACTTaGTTGCCAGTAATACAGAGGTTCTTTGATTTTCTCTGGCCTGTC +
Preference number: 6 (lower is better)
Translates to: TAFWKPDRYCQIILT*LPVIQRFFDFLWPV
Trigger: GACAGGCCAGAGAAAATCAAAGAACCTCTGTATTACTGGCAACAAAGTGAGGATGATTTGACAGTAACGGTCAGGCTTCCAGAAAGCAGT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038719.8
CDS CAA 90 bp GCTTTCTGGAAGCCTGACCGTTACTGTCAAATCATCCTCACTTTGTaGCCAGTAATACAGAGGTTCTACTTTGATTTTCTCTGGCCTGTC +
Preference number: 6 (lower is better)
Translates to: AFWKPDRYCQIILTL*PVIQRFYFDFLWPV
Trigger: GACAGGCCAGAGAAAATCAAAGTAGAACCTCTGTATTACTGGCAACAAAGTGAGGATGATTTGACAGTAACGGTCAGGCTTCCAGAAAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS CCA 72 bp TTGAGCATTACATGCAGGCTTTTCCTTATCTGGATTTaGATTCAGTTCATCAGAGGTCAGGTGCATCAAGCG +
Preference number: 6 (lower is better)
Translates to: LSITCRLFLIWI*IQFIRGQVHQA
Trigger: CGCTTGATGCACCTGACCTCTGATGAACTGAATCCAAATCCAGATAAGGAAAAGCCTGCATGTAATGCTCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS CAA 90 bp ACTGCTTTCTGGAAGCCTGACCGTTACTGTCAAATCATCCTCACTTaGTTGCCAGTAATACAGAGGTTCTACTTTGATTTTCTCTGGCCT +
Preference number: 6 (lower is better)
Translates to: TAFWKPDRYCQIILT*LPVIQRFYFDFLWP
Trigger: AGGCCAGAGAAAATCAAAGTAGAACCTCTGTATTACTGGCAACAAAGTGAGGATGATTTGACAGTAACGGTCAGGCTTCCAGAAAGCAGT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS CCA 72 bp TACATCCCAAAAGCATGCATGTGTTCTAATGTATACTaGTCATCTCGAAGTTTTACTTCTGCCACAGCTGCA +
Preference number: 6 (lower is better)
Translates to: YIPKACMCSNVY*SSRSFTSATAA
Trigger: TGCAGCTGTGGCAGAAGTAAAACTTCGAGATGACCAGTATACATTAGAACACATGCATGCTTTTGGGATGTA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS CAA 72 bp AAGCCTGACCGTTACTGTCAAATCATCCTCACTTTGTaGCCAGTAATACAGAGGTTCTTTGATTTTCTCTGG +
Preference number: 6 (lower is better)
Translates to: KPDRYCQIILTL*PVIQRFFDFLW
Trigger: CCAGAGAAAATCAAAGAACCTCTGTATTACTGGCAACAAAGTGAGGATGATTTGACAGTAACGGTCAGGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038719.8
CDS CAA 72 bp TGGAAGCCTGACCGTTACTGTCAAATCATCCTCACTTaGTTGCCAGTAATACAGAGGTTCTTTGATTTTCTC +
Preference number: 6 (lower is better)
Translates to: WKPDRYCQIILT*LPVIQRFFDFL
Trigger: GAGAAAATCAAAGAACCTCTGTATTACTGGCAACAAAGTGAGGATGATTTGACAGTAACGGTCAGGCTTCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000038719.8
CDS CAA 72 bp AAGCCTGACCGTTACTGTCAAATCATCCTCACTTTGTaGCCAGTAATACAGAGGTTCTACTTTGATTTTCTC +
Preference number: 6 (lower is better)
Translates to: KPDRYCQIILTL*PVIQRFYFDFL
Trigger: GAGAAAATCAAAGTAGAACCTCTGTATTACTGGCAACAAAGTGAGGATGATTTGACAGTAACGGTCAGGCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS CAA 72 bp TGGAAGCCTGACCGTTACTGTCAAATCATCCTCACTTaGTTGCCAGTAATACAGAGGTTCTACTTTGATTTT +
Preference number: 6 (lower is better)
Translates to: WKPDRYCQIILT*LPVIQRFYFDF
Trigger: AAAATCAAAGTAGAACCTCTGTATTACTGGCAACAAAGTGAGGATGATTTGACAGTAACGGTCAGGCTTCCA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000227843.2
CDS CCA 72 bp AAATTGTATTTGAATATCTTCCTTAGTACTGCTTTCTaGAAGCCTGACCGTTACTGTCAAATCATCCTCACT +
Preference number: 6 (lower is better)
Translates to: KLYLNIFLSTAF*KPDRYCQIILT
Trigger: AGTGAGGATGATTTGACAGTAACGGTCAGGCTTCCAGAAAGCAGTACTAAGGAAGATATTCAAATACAATTT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS TCA 72 bp ACTGAATGTTCTTCAGCTTTCAGCAGTGAGATACTGTaGATTATAATAAAAGGGTTCCCAAGCTCTTCATTA +
Preference number: 6 (lower is better)
Translates to: TECSSAFSSEIL*IIIKGFPSSSL
Trigger: TAATGAAGAGCTTGGGAACCCTTTTATTATAATTCACAGTATCTCACTGCTGAAAGCTGAAGAACATTCAGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2
CDS CAA 72 bp AATTCTTCCAAGGTTATCAATGTAGTAGACACTGTCTaGATACCAGGCATCACAGTGCAGATAATTATACAT +
Preference number: 6 (lower is better)
Translates to: NSSKVINVVDTV*IPGITVQIIIH
Trigger: ATGTATAATTATCTGCACTGTGATGCCTGGTATCAAGACAGTGTCTACTACATTGATAACCTTGGAAGAATT
36% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000038719.8
ENSMUST00000227843.2