Pregenerated sensors for NUDC (Mus musculus)
Ensembl gene IDs: ENSMUSG00000028851Ensembl transcript IDs: ENSMUST00000030665.7
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GCAAGGACAAGATCCCCAAGACCCAGCCCTTCTCCAGTGAATCCTTaGAGCTCACACGCCTGGGAAATCCATGCCTGCCCCAGCCCTAAG | + |
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Preference number: 1 (lower is better) Translates to: ARTRSPRPSPSPVNP*SSHAWEIHACPSPK Trigger: CTTAGGGCTGGGGCAGGCATGGATTTCCCAGGCGTGTGAGCTCCAAGGATTCACTGGAGAAGGGCTGGGTCTTGGGGATCTTGTCCTTGC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030665.7 |
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| 3UTR CCA 72 bp | AGCCCTTCTCCAGTGAATCCTTGGAGCTCACACGCCTaGGAAATCCATGCCTGCCCCAGCCCTAAGGTTCCC | + |
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Preference number: 3 (lower is better) Translates to: SPSPVNPWSSHA*EIHACPSPKVP Trigger: GGGAACCTTAGGGCTGGGGCAGGCATGGATTTCCCAGGCGTGTGAGCTCCAAGGATTCACTGGAGAAGGGCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030665.7 |
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| 3UTR CCA 72 bp | AGATCCCCAAGACCCAGCCCTTCTCCAGTGAATCCTTaGAGCTCACACGCCTGGGAAATCCATGCCTGCCCC | + |
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Preference number: 3 (lower is better) Translates to: RSPRPSPSPVNP*SSHAWEIHACP Trigger: GGGGCAGGCATGGATTTCCCAGGCGTGTGAGCTCCAAGGATTCACTGGAGAAGGGCTGGGTCTTGGGGATCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030665.7 |
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| 3UTR TCA 72 bp | CCAGCCCTAAGGTTCCCAGGTCCCAGGAAAGGAAGTTaGGTGGCTAGGGGCTCAACTGCAAGAGTTCAGGAA | + |
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Preference number: 3 (lower is better) Translates to: PALRFPGPRKGS*VARGSTARVQE Trigger: TTCCTGAACTCTTGCAGTTGAGCCCCTAGCCACTCAACTTCCTTTCCTGGGACCTGGGAACCTTAGGGCTGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030665.7 |
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| CDS-3UTR CCA 90 bp | TCCCCAAGACCCAGCCCTTCTCCAGTGAATCCTTGGAGCTCACACGCCTGGGAACGTGCTGCTGCGCCATaGCCAGCAGCATGCCGTCGA | + |
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Preference number: 4 (lower is better) Translates to: SPRPSPSPVNPWSSHAWERAAAP*PAACRR Trigger: TCGACGGCATGCTGCTGGCCATGGCGCAGCAGCACG...TTCCCAGGCGTGTGAGCTCCAAGGATTCACTGGAGAAGGGCTGGGTCTTGGGGA 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030665.7 |
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| CDS-3UTR CCA 90 bp | ACAAGATCCCCAAGACCCAGCCCTTCTCCAGTGAATCCTTGGAGCTCACACGCCCTGCCTTGGCCTCCTTaGCCAGCCTGGCTGCCCGCT | + |
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Preference number: 4 (lower is better) Translates to: TRSPRPSPSPVNPWSSHALPWPP*PAWLPA Trigger: AGCGGGCAGCCAGGCTGGCCAAGGAGGCCAAGGCAG...GGCGTGTGAGCTCCAAGGATTCACTGGAGAAGGGCTGGGTCTTGGGGATCTTGT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030665.7 |
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| CDS-3UTR GCA 90 bp | TCCCCAAGACCCAGCCCTTCTCCAGTGAATCCTTGGAGCTCACACGCCTGGGAAGTGTTCACAAGCTCCTaGACGCCGCCCTCGTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: SPRPSPSPVNPWSSHAWEVFTSS*TPPSCC Trigger: GCAGCACGAGGGCGGCGTGCAGGAGCTTGTGAACAC...TTCCCAGGCGTGTGAGCTCCAAGGATTCACTGGAGAAGGGCTGGGTCTTGGGGA 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030665.7 |
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| CDS-3UTR GCA 90 bp | AGCCCTTCTCCAGTGAATCCTTGGAGCTCACACGCCTGGGAAATCCATGCCTGCTCTCCGGGCCTTCTGTaGCAGCTGGTTGTGGTGGTT | + |
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Preference number: 4 (lower is better) Translates to: SPSPVNPWSSHAWEIHACSPGLL*QLVVVV Trigger: AACCACCACAACCAGCTGGCACAGAAGGCCCGGAGA...GCAGGCATGGATTTCCCAGGCGTGTGAGCTCCAAGGATTCACTGGAGAAGGGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030665.7 |
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| 3UTR CAA 72 bp | AAGATCCCCAAGACCCAGCCCTTCTCCAGTGAATCCTaGGAGCTCACACGCCTGGGAAATCCATGCCTGCCC | + |
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Preference number: 4 (lower is better) Translates to: KIPKTQPFSSES*ELTRLGNPCLP Trigger: GGGCAGGCATGGATTTCCCAGGCGTGTGAGCTCCAAGGATTCACTGGAGAAGGGCTGGGTCTTGGGGATCTT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030665.7 |
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| CDS-3UTR GCA 90 bp | TTAATGTGTAACAGGACGAATGGCAAGGACAAGATCCCCAAGACCCAGCCCTTCGCTCTGCCTTCTCCCTaGGCTCGGTCTCCTGCCGAG | + |
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Preference number: 4 (lower is better) Translates to: LMCNRTNGKDKIPKTQPFALPSP*ARSPAE Trigger: CTCGGCAGGAGACCGAGCGCAGGGAGAAGGCAGAGC...GAAGGGCTGGGTCTTGGGGATCTTGTCCTTGCCATTCGTCCTGTTACACATTAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030665.7 |
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| CDS-3UTR CCA 90 bp | ACCCAGCCCTTCTCCAGTGAATCCTTGGAGCTCACACGCCTGGGAAATCCATGCAGGTGGGCAAGCCCATaGACTTCTGCCTCTGGTCAT | + |
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Preference number: 4 (lower is better) Translates to: TQPFSSESLELTRLGNPCRWASP*TSASGH Trigger: ATGACCAGAGGCAGAAGTCCATGGGCTTGCCCACCT...GCATGGATTTCCCAGGCGTGTGAGCTCCAAGGATTCACTGGAGAAGGGCTGGGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030665.7 |
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| CDS-3UTR GCA 90 bp | AAGACCCAGCCCTTCTCCAGTGAATCCTTGGAGCTCACACGCCTGGGAAATCCATCGTCCTCCGCATCCTaGTTTCCTGGTGAGTCAAGG | + |
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Preference number: 4 (lower is better) Translates to: KTQPFSSESLELTRLGNPSSSAS*FPGESR Trigger: CCTTGACTCACCAGGAAAGCAGGATGCGGAGGACGA...TGGATTTCCCAGGCGTGTGAGCTCCAAGGATTCACTGGAGAAGGGCTGGGTCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030665.7 |
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| CDS-3UTR CCA 90 bp | ACAAGATCCCCAAGACCCAGCCCTTCTCCAGTGAATCCTTGGAGCTCACACGCCTCTGCTCATCAGAGGTaGGCAAGCCCATGGACTTCT | + |
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Preference number: 4 (lower is better) Translates to: TRSPRPSPSPVNPWSSHASAHQR*ASPWTS Trigger: AGAAGTCCATGGGCTTGCCCACCTCTGATGAGCAGA...GGCGTGTGAGCTCCAAGGATTCACTGGAGAAGGGCTGGGTCTTGGGGATCTTGT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030665.7 |
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| CDS-3UTR TCA 90 bp | ATGTGTAACAGGACGAATGGCAAGGACAAGATCCCCAAGACCCAGCCCTTCTCCCTGGGTGCTGGTCCATaGACTTCTTCAGGATTTCCT | + |
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Preference number: 4 (lower is better) Translates to: MCNRTNGKDKIPKTQPFSLGAGP*TSSGFP Trigger: AGGAAATCCTGAAGAAGTTCATGGACCAGCACCCAG...GGAGAAGGGCTGGGTCTTGGGGATCTTGTCCTTGCCATTCGTCCTGTTACACAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030665.7 |
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| CDS-3UTR CCA 90 bp | TCCCCAAGACCCAGCCCTTCTCCAGTGAATCCTTGGAGCTCACACGCCTGGGAATCTGCATCCTTTTTCTaGTCAATCTCCAGTTGCAGT | + |
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Preference number: 4 (lower is better) Translates to: SPRPSPSPVNPWSSHAWESASFF*SISSCS Trigger: ACTGCAACTGGAGATTGACCAGAAAAAGGATGCAGA...TTCCCAGGCGTGTGAGCTCCAAGGATTCACTGGAGAAGGGCTGGGTCTTGGGGA 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000030665.7 |
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| CDS-3UTR GCA 90 bp | AAGACCCAGCCCTTCTCCAGTGAATCCTTGGAGCTCACACGCCTGGGAAATCCAATTTCCTGTTTCTTCTaGTCATCAGAGGTGGGCAAG | + |
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Preference number: 4 (lower is better) Translates to: KTQPFSSESLELTRLGNPISCFF*SSEVGK Trigger: CTTGCCCACCTCTGATGAGCAGAAGAAACAGGAAAT...TGGATTTCCCAGGCGTGTGAGCTCCAAGGATTCACTGGAGAAGGGCTGGGTCTT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000030665.7 |
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| CDS-3UTR CCA 90 bp | TTAATGTGTAACAGGACGAATGGCAAGGACAAGATCCCCAAGACCCAGCCCTTCTTCTCCATCAACCACTaGTGGCTGTCCTTTAAGGCC | + |
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Preference number: 4 (lower is better) Translates to: LMCNRTNGKDKIPKTQPFFSINH*WLSFKA Trigger: GGCCTTAAAGGACAGCCACCAGTGGTTGATGGAGAA...GAAGGGCTGGGTCTTGGGGATCTTGTCCTTGCCATTCGTCCTGTTACACATTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030665.7 |
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| CDS-3UTR CAA 90 bp | ACAAGATCCCCAAGACCCAGCCCTTCTCCAGTGAATCCTTGGAGCTCACACGCCTCATCAGTCAACTCCTaGATCTGTGGCCCCGGGGTC | + |
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Preference number: 5 (lower is better) Translates to: TRSPRPSPSPVNPWSSHASSVNS*ICGPGV Trigger: GACCCCGGGGCCACAGATCAAGGAGTTGACTGATGA...GGCGTGTGAGCTCCAAGGATTCACTGGAGAAGGGCTGGGTCTTGGGGATCTTGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000030665.7 |
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| CDS-3UTR CAA 90 bp | TCCCCAAGACCCAGCCCTTCTCCAGTGAATCCTTGGAGCTCACACGCCTGGGAAAGCTGGTTGTGGTGGTaGAAAGTCTGTGTGATCAGC | + |
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Preference number: 5 (lower is better) Translates to: SPRPSPSPVNPWSSHAWESWLWW*KVCVIS Trigger: GCTGATCACACAGACTTTCAACCACCACAACCAGCT...TTCCCAGGCGTGTGAGCTCCAAGGATTCACTGGAGAAGGGCTGGGTCTTGGGGA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030665.7 |
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| CDS-3UTR CAA 90 bp | ATGTGTAACAGGACGAATGGCAAGGACAAGATCCCCAAGACCCAGCCCTTCTCCTGCACTGTCACCACCTaGCCATCCTCGATGAGCCAC | + |
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Preference number: 5 (lower is better) Translates to: MCNRTNGKDKIPKTQPFSCTVTT*PSSMSH Trigger: GTGGCTCATCGAGGATGGCAAGGTGGTGACAGTGCA...GGAGAAGGGCTGGGTCTTGGGGATCTTGTCCTTGCCATTCGTCCTGTTACACAT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030665.7 |
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| CDS-3UTR CAA 90 bp | AGGACGAATGGCAAGGACAAGATCCCCAAGACCCAGCCCTTCTCCAGTGAATCCCACCATTCCATCTTATaGATCTTCTCCAGATGCACT | + |
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Preference number: 5 (lower is better) Translates to: RTNGKDKIPKTQPFSSESHHSIL*IFSRCT Trigger: AGTGCATCTGGAGAAGATCAATAAGATGGAATGGTG...GGATTCACTGGAGAAGGGCTGGGTCTTGGGGATCTTGTCCTTGCCATTCGTCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000030665.7 |
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| CDS CAA 72 bp | AGTTGCAGTCGCTCTGCCTCCTCATCAGTCAACTCCTaGATCTGTGGCCCCGGGGTCTCTGCCTTGGCCTCC | + |
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Preference number: 6 (lower is better) Translates to: SCSRSASSSVNS*ICGPGVSALAS Trigger: GGAGGCCAAGGCAGAGACCCCGGGGCCACAGATCAAGGAGTTGACTGATGAGGAGGCAGAGCGACTGCAACT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000030665.7 |
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