Pregenerated sensors for NUCKS1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000026434Ensembl transcript IDs: ENSMUST00000062264.8, ENSMUST00000189946.7
Found 63 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCCAACACTCTGTTGTCTAGCCATGTATCAAGCCACACTACTGTATaGAGAAAAGGATGCCAGGCTCTCAGCCATGGCCGAAGACAGGCT | + |
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Preference number: 1 (lower is better) Translates to: PNTLLSSHVSSHTTV*RKGCQALSHGRRQA Trigger: AGCCTGTCTTCGGCCATGGCTGAGAGCCTGGCATCCTTTTCTTCATACAGTAGTGTGGCTTGATACATGGCTAGACAACAGAGTGTTGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062264.8 |
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| 3UTR GCA 90 bp | GGCAAACTGATCACGGGAGCTGAGCAACCTGGCAGTCTTATGCCTTaGAGAGGAATGAAGCATGGAAGGTTTGCTGTAATATGTTCACGG | + |
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Preference number: 1 (lower is better) Translates to: GKLITGAEQPGSLMP*RGMKHGRFAVICSR Trigger: CCGTGAACATATTACAGCAAACCTTCCATGCTTCATTCCTCTGCAAGGCATAAGACTGCCAGGTTGCTCAGCTCCCGTGATCAGTTTGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062264.8 |
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| 3UTR GCA 90 bp | TCTCTAGCAAGAAGCAGTTTCCATAGCGTCCACCTGAAATCTTATTaGTTTGCAGCCATGGCATTCCTTCCCTCCATTGACAACTCGAAA | + |
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Preference number: 1 (lower is better) Translates to: SLARSSFHSVHLKSY*FAAMAFLPSIDNSK Trigger: TTTCGAGTTGTCAATGGAGGGAAGGAATGCCATGGCTGCAAAGCAATAAGATTTCAGGTGGACGCTATGGAAACTGCTTCTTGCTAGAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062264.8 ENSMUST00000189946.7 |
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| 3UTR GCA 90 bp | ACCTGGCAGTCTTATGCCTTGCAGAGGAATGAAGCATGGAAGGTTTaGTGTAATATGTTCACGGTACACAGACTATGTAGAGCTCTTATT | + |
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Preference number: 1 (lower is better) Translates to: TWQSYALQRNEAWKV*CNMFTVHRLCRALI Trigger: AATAAGAGCTCTACATAGTCTGTGTACCGTGAACATATTACAGCAAACCTTCCATGCTTCATTCCTCTGCAAGGCATAAGACTGCCAGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062264.8 |
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| 3UTR GCA 90 bp | CTGAGCACCGGTTTCCAGTTGAGTCACATTAAATGTGTTCCTGTTTaGATACACGATTTGAAGGGAAGACCAGAGTGTTATAAACCACTA | + |
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Preference number: 1 (lower is better) Translates to: LSTGFQLSHIKCVPV*IHDLKGRPECYKPL Trigger: TAGTGGTTTATAACACTCTGGTCTTCCCTTCAAATCGTGTATGCAAACAGGAACACATTTAATGTGACTCAACTGGAAACCGGTGCTCAG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062264.8 |
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| 3UTR CCA 90 bp | AAACCTGATCTTGATGCTTTGCTAAGGTATCTAGACTGTTATCAATaGCACAGAGGCACCCTAAATAAAATACAGTTCATTCATCCCATT | + |
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Preference number: 1 (lower is better) Translates to: KPDLDALLRYLDCYQ*HRGTLNKIQFIHPI Trigger: AATGGGATGAATGAACTGTATTTTATTTAGGGTGCCTCTGTGCCATTGATAACAGTCTAGATACCTTAGCAAAGCATCAAGATCAGGTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062264.8 ENSMUST00000189946.7 |
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| 3UTR-3UTR TCA 90 bp | ACCATGAAGTGCCTAGCCTGCATTTCTTCCTACCCAGTCACAGGTGGGAATGTTAACAAAACAGGAGTTTaGGGCCAGCCTGGGGTACAC | + |
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Preference number: 2 (lower is better) Translates to: TMKCLACISSYPVTGGNVNKTGV*GQPGVH Trigger: GTGTACCCCAGGCTGGCCTCAAACTCCTGTTTTGTT...AACATTCCCACCTGTGACTGGGTAGGAAGAAATGCAGGCTAGGCACTTCATGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062264.8 |
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| 3UTR-3UTR GCA 90 bp | GACAATATTCTACCCTCAAGAGCAACCAGTGGCTTTAACTTCCCCTCCCCTTTGCCGCACACCATGAAGTaGCTAGCCTGCATTTCTTCC | + |
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Preference number: 2 (lower is better) Translates to: DNILPSRATSGFNFPSPLPHTMK*LACISS Trigger: GGAAGAAATGCAGGCTAGGCACTTCATGGTGTGCGG...CAAAGGGGAGGGGAAGTTAAAGCCACTGGTTGCTCTTGAGGGTAGAATATTGTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062264.8 |
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| 3UTR-3UTR TCA 90 bp | ACCATGAAGTGCCTAGCCTGCATTTCTTCCTACCCAGTCACAGGTGGGAATGTTGCCTGGTGGAAATGGTaGGTCTCTTCTTTCTTTAAG | + |
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Preference number: 2 (lower is better) Translates to: TMKCLACISSYPVTGGNVAWWKW*VSSFFK Trigger: CTTAAAGAAAGAAGAGACTCACCATTTCCACCAGGC...AACATTCCCACCTGTGACTGGGTAGGAAGAAATGCAGGCTAGGCACTTCATGGT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062264.8 |
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| 3UTR-3UTR TCA 90 bp | ACCATGAAGTGCCTAGCCTGCATTTCTTCCTACCCAGTCACAGGTGGGAATGTTTGGAGAGGGAGGTACTaGAAGCAGTTAAGTTTTTCA | + |
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Preference number: 2 (lower is better) Translates to: TMKCLACISSYPVTGGNVWRGRY*KQLSFS Trigger: TGAAAAACTTAACTGCTTTCAGTACCTCCCTCTCCA...AACATTCCCACCTGTGACTGGGTAGGAAGAAATGCAGGCTAGGCACTTCATGGT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062264.8 |
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| 3UTR-3UTR CCA 90 bp | AATAATGTGAGTGCTGAGTTAATCCAGAATTCATGTTCACCCCAACTGCCTCACTTGACATGGCTTTCGTaGGGGGAGGGGATTGGCAAA | + |
|
Preference number: 2 (lower is better) Translates to: NNVSAELIQNSCSPQLPHLTWLS*GEGIGK Trigger: TTTGCCAATCCCCTCCCCCCACGAAAGCCATGTCAA...GTGAGGCAGTTGGGGTGAACATGAATTCTGGATTAACTCAGCACTCACATTATT 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 2 transcripts: ENSMUST00000062264.8 ENSMUST00000189946.7 |
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| 3UTR-3UTR CCA 90 bp | AAAATGACAATATTCTACCCTCAAGAGCAACCAGTGGCTTTAACTTCCCCTCCCTTGGTAAGGTGTCTGTaGAGATTCTCTGGCTACCCT | + |
|
Preference number: 2 (lower is better) Translates to: KMTIFYPQEQPVALTSPPLVRCL*RFSGYP Trigger: AGGGTAGCCAGAGAATCTCCACAGACACCTTACCAA...GGGAGGGGAAGTTAAAGCCACTGGTTGCTCTTGAGGGTAGAATATTGTCATTTT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062264.8 |
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| 3UTR-3UTR CCA 90 bp | AAGTTCAGGAGCAGACAGCAGTCCTGGAAATCCTTCAATCAGAGCAAGGCAGGACAGAGGAATGAAGCATaGAAGGTTTGCTGTAATATG | + |
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Preference number: 2 (lower is better) Translates to: KFRSRQQSWKSFNQSKAGQRNEA*KVCCNM Trigger: CATATTACAGCAAACCTTCCATGCTTCATTCCTCTG...TCCTGCCTTGCTCTGATTGAAGGATTTCCAGGACTGCTGTCTGCTCCTGAACTT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062264.8 |
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| 3UTR-3UTR TCA 90 bp | GCAGCAGGAGGAGGTTGTGAGATTATGTCATTATCATGTTACTATGGAGGAAAGAGTCACTCCAGTGATTaGTTGACATGGCTTTCGTGG | + |
|
Preference number: 2 (lower is better) Translates to: AAGGGCEIMSLSCYYGGKSHSSD*LTWLSW Trigger: CCACGAAAGCCATGTCAATCAATCACTGGAGTGACT...CTTTCCTCCATAGTAACATGATAATGACATAATCTCACAACCTCCTCCTGCTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062264.8 ENSMUST00000189946.7 |
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| 3UTR-3UTR TCA 90 bp | AAGTTCAGGAGCAGACAGCAGTCCTGGAAATCCTTCAATCAGAGCAAGGCAGGAACACCTATAAGAAAATaGCACTGTCTGAGACAAACA | + |
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Preference number: 2 (lower is better) Translates to: KFRSRQQSWKSFNQSKAGTPIRK*HCLRQT Trigger: TGTTTGTCTCAGACAGTGTCATTTTCTTATAGGTGT...TCCTGCCTTGCTCTGATTGAAGGATTTCCAGGACTGCTGTCTGCTCCTGAACTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062264.8 |
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| 3UTR-3UTR GCA 90 bp | AAGTTCAGGAGCAGACAGCAGTCCTGGAAATCCTTCAATCAGAGCAAGGCAGGAGATTATTGTTCAAGTTaGTGTTCTCTAGCAAGAAGC | + |
|
Preference number: 2 (lower is better) Translates to: KFRSRQQSWKSFNQSKAGDYCSS*CSLARS Trigger: GCTTCTTGCTAGAGAACAGCAACTTGAACAATAATC...TCCTGCCTTGCTCTGATTGAAGGATTTCCAGGACTGCTGTCTGCTCCTGAACTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062264.8 |
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| 3UTR-3UTR CCA 90 bp | AATAATGTGAGTGCTGAGTTAATCCAGAATTCATGTTCACCCCAACTGCCTCACATTGCTTTGCAGCCATaGCATTCCTTCCCTCCATTG | + |
|
Preference number: 2 (lower is better) Translates to: NNVSAELIQNSCSPQLPHIALQP*HSFPPL Trigger: CAATGGAGGGAAGGAATGCCATGGCTGCAAAGCAAT...GTGAGGCAGTTGGGGTGAACATGAATTCTGGATTAACTCAGCACTCACATTATT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062264.8 ENSMUST00000189946.7 |
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| 3UTR-3UTR CCA 90 bp | GCAGCAGGAGGAGGTTGTGAGATTATGTCATTATCATGTTACTATGGAGGAAAGATTGCTTTGCAGCCATaGCATTCCTTCCCTCCATTG | + |
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Preference number: 2 (lower is better) Translates to: AAGGGCEIMSLSCYYGGKIALQP*HSFPPL Trigger: CAATGGAGGGAAGGAATGCCATGGCTGCAAAGCAAT...CTTTCCTCCATAGTAACATGATAATGACATAATCTCACAACCTCCTCCTGCTGC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062264.8 ENSMUST00000189946.7 |
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| 3UTR CAA 90 bp | GAGCATCCCATTCCTGAGCACTGCAAAGTAAGACAGTTGAATACATaGCCACTTCACTATAGGCACACCAGAAAGAAAAAGACAGAGGAA | + |
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Preference number: 2 (lower is better) Translates to: EHPIPEHCKVRQLNT*PLHYRHTRKKKTEE Trigger: TTCCTCTGTCTTTTTCTTTCTGGTGTGCCTATAGTGAAGTGGCAATGTATTCAACTGTCTTACTTTGCAGTGCTCAGGAATGGGATGCTC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062264.8 |
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| 3UTR-3UTR TCA 90 bp | GCAGCAGGAGGAGGTTGTGAGATTATGTCATTATCATGTTACTATGGAGGAAAGTCCATAGCGTCCACCTaGAATCTTATTGCTTTGCAG | + |
|
Preference number: 2 (lower is better) Translates to: AAGGGCEIMSLSCYYGGKSIAST*NLIALQ Trigger: CTGCAAAGCAATAAGATTTCAGGTGGACGCTATGGA...CTTTCCTCCATAGTAACATGATAATGACATAATCTCACAACCTCCTCCTGCTGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062264.8 ENSMUST00000189946.7 |
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| 3UTR-3UTR GCA 90 bp | GCAGCAGGAGGAGGTTGTGAGATTATGTCATTATCATGTTACTATGGAGGAAAGCAGCCTGTGAAGAAATaGACTGTGAGGGGTAAATTC | + |
|
Preference number: 2 (lower is better) Translates to: AAGGGCEIMSLSCYYGGKQPVKK*TVRGKF Trigger: GAATTTACCCCTCACAGTGCATTTCTTCACAGGCTG...CTTTCCTCCATAGTAACATGATAATGACATAATCTCACAACCTCCTCCTGCTGC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062264.8 ENSMUST00000189946.7 |
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| 3UTR CAA 90 bp | CCTTCAAATGAGCATCCCATTCCTGAGCACTGCAAAGTAAGACAGTaGAATACATTGCCACTTCACTATAGGCACACCAGAAAGAAAAAG | + |
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Preference number: 2 (lower is better) Translates to: PSNEHPIPEHCKVRQ*NTLPLHYRHTRKKK Trigger: CTTTTTCTTTCTGGTGTGCCTATAGTGAAGTGGCAATGTATTCAACTGTCTTACTTTGCAGTGCTCAGGAATGGGATGCTCATTTGAAGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062264.8 |
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| 3UTR CAA 90 bp | CAGACAGCAGTCCTGGAAATCCTTCAATCAGAGCAAGGCAGGAGTTaGTTGTTGTTTATGCAAATGCGTACAGACCAGGATTATGTAAAT | + |
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Preference number: 2 (lower is better) Translates to: QTAVLEILQSEQGRS*LLFMQMRTDQDYVN Trigger: ATTTACATAATCCTGGTCTGTACGCATTTGCATAAACAACAACAAACTCCTGCCTTGCTCTGATTGAAGGATTTCCAGGACTGCTGTCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062264.8 |
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| 3UTR-3UTR TCA 90 bp | AAATATCGAAAGGAAACAACTGTGGCATGGTTCATGGGCCCTCATTTCAATTATAGTCACTCCAGTGATTaGTTGACATGGCTTTCGTGG | + |
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Preference number: 2 (lower is better) Translates to: KYRKETTVAWFMGPHFNYSHSSD*LTWLSW Trigger: CCACGAAAGCCATGTCAATCAATCACTGGAGTGACT...ATAATTGAAATGAGGGCCCATGAACCATGCCACAGTTGTTTCCTTTCGATATTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062264.8 ENSMUST00000189946.7 |
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| 3UTR-3UTR GCA 90 bp | AAAATGACAATATTCTACCCTCAAGAGCAACCAGTGGCTTTAACTTCCCCTCCCCACTTAAAGCCTGTGTaGTCATTTGAGACACCATTA | + |
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Preference number: 2 (lower is better) Translates to: KMTIFYPQEQPVALTSPPHLKPV*SFETPL Trigger: TAATGGTGTCTCAAATGAGCACACAGGCTTTAAGTG...GGGAGGGGAAGTTAAAGCCACTGGTTGCTCTTGAGGGTAGAATATTGTCATTTT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000062264.8 |
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| 3UTR-3UTR TCA 90 bp | AAATATCGAAAGGAAACAACTGTGGCATGGTTCATGGGCCCTCATTTCAATTATTCCATAGCGTCCACCTaGAATCTTATTGCTTTGCAG | + |
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Preference number: 2 (lower is better) Translates to: KYRKETTVAWFMGPHFNYSIAST*NLIALQ Trigger: CTGCAAAGCAATAAGATTTCAGGTGGACGCTATGGA...ATAATTGAAATGAGGGCCCATGAACCATGCCACAGTTGTTTCCTTTCGATATTT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062264.8 ENSMUST00000189946.7 |
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| 3UTR-3UTR TCA 90 bp | AAATATCGAAAGGAAACAACTGTGGCATGGTTCATGGGCCCTCATTTCAATTATATTTTGGATCATTGGTaGAACTACCCAAAAACAGGA | + |
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Preference number: 2 (lower is better) Translates to: KYRKETTVAWFMGPHFNYILDHW*NYPKTG Trigger: TCCTGTTTTTGGGTAGTTTCACCAATGATCCAAAAT...ATAATTGAAATGAGGGCCCATGAACCATGCCACAGTTGTTTCCTTTCGATATTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000062264.8 ENSMUST00000189946.7 |
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| 3UTR-3UTR CCA 90 bp | AAATATCGAAAGGAAACAACTGTGGCATGGTTCATGGGCCCTCATTTCAATTATAAGACTGAGACAAAATaGCAACTTAAACACGTAAGC | + |
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Preference number: 2 (lower is better) Translates to: KYRKETTVAWFMGPHFNYKTETK*QLKHVS Trigger: GCTTACGTGTTTAAGTTGCCATTTTGTCTCAGTCTT...ATAATTGAAATGAGGGCCCATGAACCATGCCACAGTTGTTTCCTTTCGATATTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062264.8 ENSMUST00000189946.7 |
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| 3UTR GCA 72 bp | CTGCTAGTTTCTGACCTCCGTCCGCACACCATGAAGTaGCTAGCCTGCATTTCTTCCTACCCAGTCACAGGT | + |
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Preference number: 3 (lower is better) Translates to: LLVSDLRPHTMK*LACISSYPVTG Trigger: ACCTGTGACTGGGTAGGAAGAAATGCAGGCTAGGCACTTCATGGTGTGCGGACGGAGGTCAGAAACTAGCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062264.8 |
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| 3UTR TCA 72 bp | CCCCCACACCCAATATACAAAGTGTCCACCCAACTGTaGTGCTCTACAGCCACAGAGCATGCTCAGATGTCA | + |
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Preference number: 3 (lower is better) Translates to: PPHPIYKVSTQL*CSTATEHAQMS Trigger: TGACATCTGAGCATGCTCTGTGGCTGTAGAGCATCACAGTTGGGTGGACACTTTGTATATTGGGTGTGGGGG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062264.8 |
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| 3UTR-3UTR CAA 90 bp | ACCATGAAGTGCCTAGCCTGCATTTCTTCCTACCCAGTCACAGGTGGGAATGTTAAACAAAACAGGAGTTaGAGGCCAGCCTGGGGTACA | + |
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Preference number: 3 (lower is better) Translates to: TMKCLACISSYPVTGGNVKQNRS*RPAWGT Trigger: TGTACCCCAGGCTGGCCTCAAACTCCTGTTTTGTTT...AACATTCCCACCTGTGACTGGGTAGGAAGAAATGCAGGCTAGGCACTTCATGGT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062264.8 |
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| 3UTR TCA 72 bp | CTGTTGTCTAGCCATGTATCAAGCCACACTACTGTATaGAGAAAAGGATGCCAGGCTCTCAGCCATGGCCGA | + |
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Preference number: 3 (lower is better) Translates to: LLSSHVSSHTTV*RKGCQALSHGR Trigger: TCGGCCATGGCTGAGAGCCTGGCATCCTTTTCTTCATACAGTAGTGTGGCTTGATACATGGCTAGACAACAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062264.8 |
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| 3UTR TCA 72 bp | AAACCCCTAAAAGGGAGAGATGCCTGGTGGAAATGGTaGGTCTCTTCTTTCTTTAAGGACGGGTTCCTGAGC | + |
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Preference number: 3 (lower is better) Translates to: KPLKGRDAWWKW*VSSFFKDGFLS Trigger: GCTCAGGAACCCGTCCTTAAAGAAAGAAGAGACTCACCATTTCCACCAGGCATCTCTCCCTTTTAGGGGTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062264.8 |
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| 3UTR TCA 72 bp | AGAGTAAGCCATAGAGGTGCCAAGGGCCAGTCATTATaGACTGAGGGGCACACCCTCATATCATTGTTACAC | + |
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Preference number: 3 (lower is better) Translates to: RVSHRGAKGQSL*TEGHTLISLLH Trigger: GTGTAACAATGATATGAGGGTGTGCCCCTCAGTTCATAATGACTGGCCCTTGGCACCTCTATGGCTTACTCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000062264.8 |
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| 3UTR GCA 72 bp | ATCACGGGAGCTGAGCAACCTGGCAGTCTTATGCCTTaGAGAGGAATGAAGCATGGAAGGTTTGCTGTAATA | + |
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Preference number: 3 (lower is better) Translates to: ITGAEQPGSLMP*RGMKHGRFAVI Trigger: TATTACAGCAAACCTTCCATGCTTCATTCCTCTGCAAGGCATAAGACTGCCAGGTTGCTCAGCTCCCGTGAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062264.8 |
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| 3UTR GCA 72 bp | AGAAGCAGTTTCCATAGCGTCCACCTGAAATCTTATTaGTTTGCAGCCATGGCATTCCTTCCCTCCATTGAC | + |
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Preference number: 3 (lower is better) Translates to: RSSFHSVHLKSY*FAAMAFLPSID Trigger: GTCAATGGAGGGAAGGAATGCCATGGCTGCAAAGCAATAAGATTTCAGGTGGACGCTATGGAAACTGCTTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062264.8 ENSMUST00000189946.7 |
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| 3UTR CCA 72 bp | ACCTGGCAGTCTTATGCCTTGCAGAGGAATGAAGCATaGAAGGTTTGCTGTAATATGTTCACGGTACACAGA | + |
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Preference number: 3 (lower is better) Translates to: TWQSYALQRNEA*KVCCNMFTVHR Trigger: TCTGTGTACCGTGAACATATTACAGCAAACCTTCCATGCTTCATTCCTCTGCAAGGCATAAGACTGCCAGGT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062264.8 |
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| 3UTR-3UTR CAA 90 bp | AATAATGTGAGTGCTGAGTTAATCCAGAATTCATGTTCACCCCAACTGCCTCACCCACCTGAAATCTTATaGCTTTGCAGCCATGGCATT | + |
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Preference number: 3 (lower is better) Translates to: NNVSAELIQNSCSPQLPHPPEIL*LCSHGI Trigger: AATGCCATGGCTGCAAAGCAATAAGATTTCAGGTGG...GTGAGGCAGTTGGGGTGAACATGAATTCTGGATTAACTCAGCACTCACATTATT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062264.8 ENSMUST00000189946.7 |
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| 3UTR-3UTR CAA 90 bp | GCAGCAGGAGGAGGTTGTGAGATTATGTCATTATCATGTTACTATGGAGGAAAGCCACCTGAAATCTTATaGCTTTGCAGCCATGGCATT | + |
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Preference number: 3 (lower is better) Translates to: AAGGGCEIMSLSCYYGGKPPEIL*LCSHGI Trigger: AATGCCATGGCTGCAAAGCAATAAGATTTCAGGTGG...CTTTCCTCCATAGTAACATGATAATGACATAATCTCACAACCTCCTCCTGCTGC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062264.8 ENSMUST00000189946.7 |
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| 3UTR TCA 72 bp | AAAAGACCGTTATCAAGACAAAAGAAGCACTGGCTCTaGATCTCTTTGAGAATAACAAATCCACTAAGTTCC | + |
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Preference number: 3 (lower is better) Translates to: KRPLSRQKKHWL*ISLRITNPLSS Trigger: GGAACTTAGTGGATTTGTTATTCTCAAAGAGATTCAGAGCCAGTGCTTCTTTTGTCTTGATAACGGTCTTTT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000062264.8 ENSMUST00000189946.7 |
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| 3UTR CCA 72 bp | TGGAGGAAAGATTTAAATATCGAAAGGAAACAACTGTaGCATGGTTCATGGGCCCTCATTTCAATTATTTGT | + |
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Preference number: 3 (lower is better) Translates to: WRKDLNIERKQL*HGSWALISIIC Trigger: ACAAATAATTGAAATGAGGGCCCATGAACCATGCCACAGTTGTTTCCTTTCGATATTTAAATCTTTCCTCCA 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062264.8 ENSMUST00000189946.7 |
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| 3UTR CCA 72 bp | CTTGATGCTTTGCTAAGGTATCTAGACTGTTATCAATaGCACAGAGGCACCCTAAATAAAATACAGTTCATT | + |
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Preference number: 3 (lower is better) Translates to: LDALLRYLDCYQ*HRGTLNKIQFI Trigger: AATGAACTGTATTTTATTTAGGGTGCCTCTGTGCCATTGATAACAGTCTAGATACCTTAGCAAAGCATCAAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062264.8 ENSMUST00000189946.7 |
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| 3UTR TCA 72 bp | GGCCATGTTAATACTCATTTATTAGCAGTGCAGGGTTaGAATAACTCTCTGCTACTAGGTGCTTTATTTATT | + |
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Preference number: 3 (lower is better) Translates to: GHVNTHLLAVQG*NNSLLLGALFI Trigger: AATAAATAAAGCACCTAGTAGCAGAGAGTTATTTCAACCCTGCACTGCTAATAAATGAGTATTAACATGGCC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062264.8 |
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| 3UTR CCA 72 bp | GAAAGATTTAAATATCGAAAGGAAACAACTGTGGCATaGTTCATGGGCCCTCATTTCAATTATTTGTATTCA | + |
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Preference number: 3 (lower is better) Translates to: ERFKYRKETTVA*FMGPHFNYLYS Trigger: TGAATACAAATAATTGAAATGAGGGCCCATGAACCATGCCACAGTTGTTTCCTTTCGATATTTAAATCTTTC 35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062264.8 ENSMUST00000189946.7 |
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| CDS-3UTR TCA 90 bp | AGACCAACTAAGAAGCAAACAACTCCACAGTATGGAAGCAGCAGGAGGAGGTTGAGCCTCTCGGGGAGATaGCCGAATCTTCTTAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: RPTKKQTTPQYGSSRRRLSLSGR*PNLLSR Trigger: CCTGCTAAGAAGATTCGGTCATCTCCCCGAGAGGCT...CAACCTCCTCCTGCTGCTTCCATACTGTGGAGTTGTTTGCTTCTTAGTTGGTCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062264.8 ENSMUST00000189946.7 |
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| CDS-3UTR GCA 90 bp | AGACCAACTAAGAAGCAAACAACTCCACAGTATGGAAGCAGCAGGAGGAGGTTGCCGGCTCTTCCTCGCTaGCAACATCTTCCAAGAGCA | + |
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Preference number: 4 (lower is better) Translates to: RPTKKQTTPQYGSSRRRLPALPR*QHLPRA Trigger: TGCTCTTGGAAGATGTTGGCAGCGAGGAAGAGCCGG...CAACCTCCTCCTGCTGCTTCCATACTGTGGAGTTGTTTGCTTCTTAGTTGGTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062264.8 ENSMUST00000189946.7 |
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| CDS-3UTR TCA 90 bp | AAAATGACAATATTCTACCCTCAAGAGCAACCAGTGGCTTTAACTTCCCCTCCCAGCCTCTCGGGGAGATaGCCGAATCTTCTTAGCAGG | + |
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Preference number: 4 (lower is better) Translates to: KMTIFYPQEQPVALTSPPSLSGR*PNLLSR Trigger: CCTGCTAAGAAGATTCGGTCATCTCCCCGAGAGGCT...GGGAGGGGAAGTTAAAGCCACTGGTTGCTCTTGAGGGTAGAATATTGTCATTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000062264.8 |
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| CDS-3UTR TCA 90 bp | AGACCAACTAAGAAGCAAACAACTCCACAGTATGGAAGCAGCAGGAGGAGGTTGCTTAGCAGGAGGGCCTaGATCTCTTCCATAATCTTC | + |
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Preference number: 4 (lower is better) Translates to: RPTKKQTTPQYGSSRRRLLSRRA*ISSIIF Trigger: GAAGATTATGGAAGAGATTCAGGCCCTCCTGCTAAG...CAACCTCCTCCTGCTGCTTCCATACTGTGGAGTTGTTTGCTTCTTAGTTGGTCT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062264.8 ENSMUST00000189946.7 |
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| CDS-3UTR GCA 90 bp | AATAATGTGAGTGCTGAGTTAATCCAGAATTCATGTTCACCCCAACTGCCTCACCCGGCTCTTCCTCGCTaGCAACATCTTCCAAGAGCA | + |
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Preference number: 4 (lower is better) Translates to: NNVSAELIQNSCSPQLPHPALPR*QHLPRA Trigger: TGCTCTTGGAAGATGTTGGCAGCGAGGAAGAGCCGG...GTGAGGCAGTTGGGGTGAACATGAATTCTGGATTAACTCAGCACTCACATTATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062264.8 ENSMUST00000189946.7 |
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| CDS-3UTR GCA 90 bp | AAGTTCAGGAGCAGACAGCAGTCCTGGAAATCCTTCAATCAGAGCAAGGCAGGAGGAAATCTTCATCGCTaGCAGAATCTTTCTCCTGGA | + |
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Preference number: 4 (lower is better) Translates to: KFRSRQQSWKSFNQSKAGGNLHR*QNLSPG Trigger: TCCAGGAGAAAGATTCTGGCAGCGATGAAGATTTCC...TCCTGCCTTGCTCTGATTGAAGGATTTCCAGGACTGCTGTCTGCTCCTGAACTT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062264.8 |
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| CDS-3UTR GCA 90 bp | AGACCAACTAAGAAGCAAACAACTCCACAGTATGGAAGCAGCAGGAGGAGGTTGTTCTGGAGGGCTTTCTaGTTCCTCATCCTCTTCTTT | + |
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Preference number: 4 (lower is better) Translates to: RPTKKQTTPQYGSSRRRLFWRAF*FLILFF Trigger: AAAGAAGAGGATGAGGAAGCAGAAAGCCCTCCAGAA...CAACCTCCTCCTGCTGCTTCCATACTGTGGAGTTGTTTGCTTCTTAGTTGGTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062264.8 ENSMUST00000189946.7 |
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| CDS-3UTR CCA 90 bp | GCAGCAGGAGGAGGTTGTGAGATTATGTCATTATCATGTTACTATGGAGGAAAGCTGCCAGAATTCTCCTaGAATGGCGCCTCATCATCT | + |
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Preference number: 4 (lower is better) Translates to: AAGGGCEIMSLSCYYGGKLPEFS*NGASSS Trigger: AGATGATGAGGCGCCATTCCAGGAGAATTCTGGCAG...CTTTCCTCCATAGTAACATGATAATGACATAATCTCACAACCTCCTCCTGCTGC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000189946.7 |
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| 3UTR CAA 72 bp | GAGCATCCCATTCCTGAGCACTGCAAAGTAAGACAGTaGAATACATTGCCACTTCACTATAGGCACACCAGA | + |
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Preference number: 4 (lower is better) Translates to: EHPIPEHCKVRQ*NTLPLHYRHTR Trigger: TCTGGTGTGCCTATAGTGAAGTGGCAATGTATTCAACTGTCTTACTTTGCAGTGCTCAGGAATGGGATGCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062264.8 |
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| CDS-3UTR TCA 90 bp | GTCAAGCCACAGCCCAAACCGTGTCCTACAGAGGTTTCCTTTGTTTTTAATAAACTTAGCAGGAGGGCCTaGATCTCTTCCATAATCTTC | + |
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Preference number: 4 (lower is better) Translates to: VKPQPKPCPTEVSFVFNKLSRRA*ISSIIF Trigger: GAAGATTATGGAAGAGATTCAGGCCCTCCTGCTAAG...TTTATTAAAAACAAAGGAAACCTCTGTAGGACACGGTTTGGGCTGTGGCTTGAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000062264.8 ENSMUST00000189946.7 |
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| 3UTR CAA 72 bp | GTCCTGGAAATCCTTCAATCAGAGCAAGGCAGGAGTTaGTTGTTGTTTATGCAAATGCGTACAGACCAGGAT | + |
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Preference number: 4 (lower is better) Translates to: VLEILQSEQGRS*LLFMQMRTDQD Trigger: ATCCTGGTCTGTACGCATTTGCATAAACAACAACAAACTCCTGCCTTGCTCTGATTGAAGGATTTCCAGGAC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000062264.8 |
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| CDS-3UTR TCA 90 bp | AAATATCGAAAGGAAACAACTGTGGCATGGTTCATGGGCCCTCATTTCAATTATCTGTCTTCTGCCGAGTaGGAATCATCCTTCTTGGTC | + |
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Preference number: 4 (lower is better) Translates to: KYRKETTVAWFMGPHFNYLSSAE*ESSFLV Trigger: GACCAAGAAGGATGATTCTCACTCGGCAGAAGACAG...ATAATTGAAATGAGGGCCCATGAACCATGCCACAGTTGTTTCCTTTCGATATTT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062264.8 ENSMUST00000189946.7 |
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| CDS-3UTR GCA 90 bp | GTCAAGCCACAGCCCAAACCGTGTCCTACAGAGGTTTCCTTTGTTTTTAATAAATTCTGGAGGGCTTTCTaGTTCCTCATCCTCTTCTTT | + |
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Preference number: 4 (lower is better) Translates to: VKPQPKPCPTEVSFVFNKFWRAF*FLILFF Trigger: AAAGAAGAGGATGAGGAAGCAGAAAGCCCTCCAGAA...TTTATTAAAAACAAAGGAAACCTCTGTAGGACACGGTTTGGGCTGTGGCTTGAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000062264.8 ENSMUST00000189946.7 |
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| CDS-3UTR GCA 90 bp | GTCAAGCCACAGCCCAAACCGTGTCCTACAGAGGTTTCCTTTGTTTTTAATAAAGGAAATCTTCATCGCTaGCAGAATTCTCCTGGAATG | + |
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Preference number: 4 (lower is better) Translates to: VKPQPKPCPTEVSFVFNKGNLHR*QNSPGM Trigger: CATTCCAGGAGAATTCTGGCAGCGATGAAGATTTCC...TTTATTAAAAACAAAGGAAACCTCTGTAGGACACGGTTTGGGCTGTGGCTTGAC 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000189946.7 |
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| CDS-3UTR GCA 90 bp | AATAATGTGAGTGCTGAGTTAATCCAGAATTCATGTTCACCCCAACTGCCTCACAAGAGCATCTCTCTCTaGTTAGAAGCTGCTTTAGAT | + |
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Preference number: 4 (lower is better) Translates to: NNVSAELIQNSCSPQLPHKSISL*LEAALD Trigger: ATCTAAAGCAGCTTCTAAGCAGAGAGAGATGCTCTT...GTGAGGCAGTTGGGGTGAACATGAATTCTGGATTAACTCAGCACTCACATTATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062264.8 ENSMUST00000189946.7 |
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| CDS-3UTR GCA 90 bp | GCAGCAGGAGGAGGTTGTGAGATTATGTCATTATCATGTTACTATGGAGGAAAGAAGAGCATCTCTCTCTaGTTAGAAGCTGCTTTAGAT | + |
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Preference number: 4 (lower is better) Translates to: AAGGGCEIMSLSCYYGGKKSISL*LEAALD Trigger: ATCTAAAGCAGCTTCTAAGCAGAGAGAGATGCTCTT...CTTTCCTCCATAGTAACATGATAATGACATAATCTCACAACCTCCTCCTGCTGC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062264.8 ENSMUST00000189946.7 |
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| 3UTR CAA 72 bp | ATTCCTGAGCACTGCAAAGTAAGACAGTTGAATACATaGCCACTTCACTATAGGCACACCAGAAAGAAAAAG | + |
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Preference number: 4 (lower is better) Translates to: IPEHCKVRQLNT*PLHYRHTRKKK Trigger: CTTTTTCTTTCTGGTGTGCCTATAGTGAAGTGGCAATGTATTCAACTGTCTTACTTTGCAGTGCTCAGGAAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000062264.8 |
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| CDS-3UTR CAA 90 bp | AAAATGACAATATTCTACCCTCAAGAGCAACCAGTGGCTTTAACTTCCCCTCCCGACTTGGCGTCACTGTaGCCTTTAGTCTGGGTTTGG | + |
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Preference number: 5 (lower is better) Translates to: KMTIFYPQEQPVALTSPPDLASL*PLVWVW Trigger: CCAAACCCAGACTAAAGGCAACAGTGACGCCAAGTC...GGGAGGGGAAGTTAAAGCCACTGGTTGCTCTTGAGGGTAGAATATTGTCATTTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000062264.8 |
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| CDS-3UTR CAA 90 bp | GCAGCAGGAGGAGGTTGTGAGATTATGTCATTATCATGTTACTATGGAGGAAAGGACTTGGCGTCACTGTaGCCTTTAGTCTGGGTTTGG | + |
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Preference number: 5 (lower is better) Translates to: AAGGGCEIMSLSCYYGGKDLASL*PLVWVW Trigger: CCAAACCCAGACTAAAGGCAACAGTGACGCCAAGTC...CTTTCCTCCATAGTAACATGATAATGACATAATCTCACAACCTCCTCCTGCTGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062264.8 ENSMUST00000189946.7 |
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