Pregenerated sensors for NUBPL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000035142Ensembl transcript IDs: ENSMUST00000040090.16, ENSMUST00000159567.2
Found 100 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | AAAAGCCCAAGCCAGGCCTGGTATCTCTCTCTTCCTGCTGCCTGTTaGTCTGGATGTAGAACACTTGGTTCCTTTCCCAGAACCATGTTT | + |
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Preference number: 1 (lower is better) Translates to: KSPSQAWYLSLPAAC*SGCRTLGSFPRTMF Trigger: AAACATGGTTCTGGGAAAGGAACCAAGTGTTCTACATCCAGATCAACAGGCAGCAGGAAGAGAGAGATACCAGGCCTGGCTTGGGCTTTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| 3UTR TCA 90 bp | GTAGGTGTGACCCTGTTGGAGGAAGTATGTCACTATGGTAGGCTTTaGAACTTCAAAAGCCCAAGCCAGGCCTGGTATCTCTCTCTTCCT | + |
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Preference number: 1 (lower is better) Translates to: VGVTLLEEVCHYGRL*NFKSPSQAWYLSLP Trigger: AGGAAGAGAGAGATACCAGGCCTGGCTTGGGCTTTTGAAGTTTCAAAGCCTACCATAGTGACATACTTCCTCCAACAGGGTCACACCTAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| 3UTR GCA 90 bp | TCATCAAATACATGTTTAAGACAGGACTACAGGCAAGATCCAAACTaGCTGATGGCAAGGTGTGACATCTGCATTCACGTCCACATTGAG | + |
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Preference number: 1 (lower is better) Translates to: SSNTCLRQDYRQDPN*LMARCDICIHVHIE Trigger: CTCAATGTGGACGTGAATGCAGATGTCACACCTTGCCATCAGGCAGTTTGGATCTTGCCTGTAGTCCTGTCTTAAACATGTATTTGATGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| 3UTR CCA 90 bp | ACTCATGTTTTGGACAAGACCAAGAACCTGTTTAGAAAGGTTCTTTaGAGCAACTCCCGTCTTTGTTGTCTGGAAATCCGCAGTCCAGTT | + |
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Preference number: 1 (lower is better) Translates to: THVLDKTKNLFRKVL*SNSRLCCLEIRSPV Trigger: AACTGGACTGCGGATTTCCAGACAACAAAGACGGGAGTTGCTCCAAAGAACCTTTCTAAACAGGTTCTTGGTCTTGTCCAAAACATGAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159567.2 |
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| 3UTR TCA 90 bp | CACAGTTTCTCAAGAGATAGTTCAATGAAAGCAGTGCAGTGCAGCTaGGATATCAGTTGTCAAAACCCCAAATACAGAATCATCATAGAG | + |
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Preference number: 1 (lower is better) Translates to: HSFSRDSSMKAVQCS*DISCQNPKYRIIIE Trigger: CTCTATGATGATTCTGTATTTGGGGTTTTGACAACTGATATCTCAGCTGCACTGCACTGCTTTCATTGAACTATCTCTTGAGAAACTGTG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| 3UTR-3UTR TCA 90 bp | ACTCACTGCAGAAAACCTGACCTTTGGCTCTCCCATACAGTCCATGTTGCTGTTCTTCCTGCTGCCTGTTaGTCTGGATGTAGAACACTT | + |
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Preference number: 2 (lower is better) Translates to: THCRKPDLWLSHTVHVAVLPAAC*SGCRTL Trigger: AAGTGTTCTACATCCAGATCAACAGGCAGCAGGAAG...AACAGCAACATGGACTGTATGGGAGAGCCAAAGGTCAGGTTTTCTGCAGTGAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| 3UTR CAA 90 bp | GGTATCTCTCTCTTCCTGCTGCCTGTTGATCTGGATGTAGAACACTaGGTTCCTTTCCCAGAACCATGTTTACCTATGTGCTGCCATTCT | + |
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Preference number: 2 (lower is better) Translates to: GISLFLLPVDLDVEH*VPFPEPCLPMCCHS Trigger: AGAATGGCAGCACATAGGTAAACATGGTTCTGGGAAAGGAACCAAGTGTTCTACATCCAGATCAACAGGCAGCAGGAAGAGAGAGATACC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| 3UTR-3UTR GCA 90 bp | TCTGGATGTAGAACACTTGGTTCCTTTCCCAGAACCATGTTTACCTATGTGCTGCCATTCTTCCTGCCATaGCAGTCATGCCATGGACTA | + |
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Preference number: 2 (lower is better) Translates to: SGCRTLGSFPRTMFTYVLPFFLP*QSCHGL Trigger: TAGTCCATGGCATGACTGGCATGGCAGGAAGAATGG...CAGCACATAGGTAAACATGGTTCTGGGAAAGGAACCAAGTGTTCTACATCCAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| 3UTR-3UTR TCA 90 bp | TGTTGGAGGAAGTATGTCACTATGGTAGGCTTTGAAACTTCAAAAGCCCAAGCCAAGATCCAAACTGCCTaGTGGCAAGGTGTGACATCT | + |
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Preference number: 2 (lower is better) Translates to: CWRKYVTMVGFETSKAQAKIQTA*WQGVTS Trigger: AGATGTCACACCTTGCCATCAGGCAGTTTGGATCTT...GGCTTGGGCTTTTGAAGTTTCAAAGCCTACCATAGTGACATACTTCCTCCAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| 3UTR-3UTR GCA 90 bp | TGTTGGAGGAAGTATGTCACTATGGTAGGCTTTGAAACTTCAAAAGCCCAAGCCCTTTCAGAGTCTAACTaGGCTTCAGCAGTTCTCTGC | + |
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Preference number: 2 (lower is better) Translates to: CWRKYVTMVGFETSKAQALSESN*ASAVLC Trigger: GCAGAGAACTGCTGAAGCGCAGTTAGACTCTGAAAG...GGCTTGGGCTTTTGAAGTTTCAAAGCCTACCATAGTGACATACTTCCTCCAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| 3UTR-3UTR GCA 90 bp | TGTTGGAGGAAGTATGTCACTATGGTAGGCTTTGAAACTTCAAAAGCCCAAGCCGTATCTCTCTCTTCCTaGTGCCTGTTGATCTGGATG | + |
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Preference number: 2 (lower is better) Translates to: CWRKYVTMVGFETSKAQAVSLSS*CLLIWM Trigger: CATCCAGATCAACAGGCAGCAGGAAGAGAGAGATAC...GGCTTGGGCTTTTGAAGTTTCAAAGCCTACCATAGTGACATACTTCCTCCAACA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| 3UTR-3UTR CCA 90 bp | ACTCACTGCAGAAAACCTGACCTTTGGCTCTCCCATACAGTCCATGTTGCTGTTACTTATTATCTGTGGTaGTCTGAAGAGAAATGGCCT | + |
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Preference number: 2 (lower is better) Translates to: THCRKPDLWLSHTVHVAVTYYLW*SEEKWP Trigger: AGGCCATTTCTCTTCAGACCACCACAGATAATAAGT...AACAGCAACATGGACTGTATGGGAGAGCCAAAGGTCAGGTTTTCTGCAGTGAGT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| 3UTR-3UTR GCA 90 bp | AAGACACTCATGTTTTGGACAAGACCAAGAACCTGTTTAGAAAGGTTCTTTGGATCACAGGTCAGCAACTaGAGCTCCATCCACTCACAA | + |
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Preference number: 2 (lower is better) Translates to: KTLMFWTRPRTCLERFFGSQVSN*SSIHSQ Trigger: TTGTGAGTGGATGGAGCTGCAGTTGCTGACCTGTGA...TCCAAAGAACCTTTCTAAACAGGTTCTTGGTCTTGTCCAAAACATGAGTGTCTT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159567.2 |
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| 3UTR-3UTR CCA 90 bp | TCTGGATGTAGAACACTTGGTTCCTTTCCCAGAACCATGTTTACCTATGTGCTGATGCCAGTCATGCCATaGACTAAACCTCTGAAATGT | + |
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Preference number: 2 (lower is better) Translates to: SGCRTLGSFPRTMFTYVLMPVMP*TKPLKC Trigger: ACATTTCAGAGGTTTAGTCCATGGCATGACTGGCAT...CAGCACATAGGTAAACATGGTTCTGGGAAAGGAACCAAGTGTTCTACATCCAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| 3UTR-3UTR TCA 90 bp | ATCTATAATAGTAGTAGTGCAGTGGGGAAAATATTGTCATCCTTACTGGGATCCCAAGAGATAGTTCAATaGAAGCAGTGCAGTGCAGCT | + |
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Preference number: 2 (lower is better) Translates to: IYNSSSAVGKILSSLLGSQEIVQ*KQCSAA Trigger: AGCTGCACTGCACTGCTTTCATTGAACTATCTCTTG...GGATCCCAGTAAGGATGACAATATTTTCCCCACTGCACTACTACTATTATAGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| 3UTR-3UTR TCA 90 bp | GATATCAGTTGTCAAAACCCCAAATACAGAATCATCATAGAGCAGCCAGCACACATGTTTGACAGTTCATaGTTGTCAAATACCAGGACA | + |
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Preference number: 2 (lower is better) Translates to: DISCQNPKYRIIIEQPAHMFDSS*LSNTRT Trigger: TGTCCTGGTATTTGACAATCATGAACTGTCAAACAT...GTGTGCTGGCTGCTCTATGATGATTCTGTATTTGGGGTTTTGACAACTGATATC 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| 3UTR-3UTR CCA 90 bp | GATATCAGTTGTCAAAACCCCAAATACAGAATCATCATAGAGCAGCCAGCACACTTGTCATTATTTTTGTaGGTTCCACACGACCACAAT | + |
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Preference number: 2 (lower is better) Translates to: DISCQNPKYRIIIEQPAHLSLFL*VPHDHN Trigger: ATTGTGGTCGTGTGGAACCCACAAAAATAATGACAA...GTGTGCTGGCTGCTCTATGATGATTCTGTATTTGGGGTTTTGACAACTGATATC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| 3UTR TCA 72 bp | AGCCAGGCCTGGTATCTCTCTCTTCCTGCTGCCTGTTaGTCTGGATGTAGAACACTTGGTTCCTTTCCCAGA | + |
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Preference number: 3 (lower is better) Translates to: SQAWYLSLPAAC*SGCRTLGSFPR Trigger: TCTGGGAAAGGAACCAAGTGTTCTACATCCAGATCAACAGGCAGCAGGAAGAGAGAGATACCAGGCCTGGCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| 3UTR GCA 72 bp | CACTTGGTTCCTTTCCCAGAACCATGTTTACCTATGTaGTGCCATTCTTCCTGCCATGCCAGTCATGCCATG | + |
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Preference number: 3 (lower is better) Translates to: HLVPFPEPCLPM*CHSSCHASHAM Trigger: CATGGCATGACTGGCATGGCAGGAAGAATGGCAGCACATAGGTAAACATGGTTCTGGGAAAGGAACCAAGTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| 3UTR TCA 72 bp | ACCCTGTTGGAGGAAGTATGTCACTATGGTAGGCTTTaGAACTTCAAAAGCCCAAGCCAGGCCTGGTATCTC | + |
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Preference number: 3 (lower is better) Translates to: TLLEEVCHYGRL*NFKSPSQAWYL Trigger: GAGATACCAGGCCTGGCTTGGGCTTTTGAAGTTTCAAAGCCTACCATAGTGACATACTTCCTCCAACAGGGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| 3UTR TCA 72 bp | CACTATTTGAAAGAGATGGGACGGGATGGCCTTGTTTaGGTAGGTGTGACCCTGTTGGAGGAAGTATGTCAC | + |
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Preference number: 3 (lower is better) Translates to: HYLKEMGRDGLV*VGVTLLEEVCH Trigger: GTGACATACTTCCTCCAACAGGGTCACACCTACTCAAACAAGGCCATCCCGTCCCATCTCTTTCAAATAGTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| 3UTR-3UTR CAA 90 bp | ACTCACTGCAGAAAACCTGACCTTTGGCTCTCCCATACAGTCCATGTTGCTGTTGCATTCACGTCCACATaGAGTAAGCCCTTTCAGAGT | + |
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Preference number: 3 (lower is better) Translates to: THCRKPDLWLSHTVHVAVAFTST*SKPFQS Trigger: ACTCTGAAAGGGCTTACTCAATGTGGACGTGAATGC...AACAGCAACATGGACTGTATGGGAGAGCCAAAGGTCAGGTTTTCTGCAGTGAGT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| 3UTR-3UTR CAA 90 bp | AGGAAGTATGTCACTATGGTAGGCTTTGAAACTTCAAAAGCCCAAGCCAGGCCTCTGGATGTAGAACACTaGGTTCCTTTCCCAGAACCA | + |
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Preference number: 3 (lower is better) Translates to: RKYVTMVGFETSKAQARPLDVEH*VPFPEP Trigger: TGGTTCTGGGAAAGGAACCAAGTGTTCTACATCCAG...AGGCCTGGCTTGGGCTTTTGAAGTTTCAAAGCCTACCATAGTGACATACTTCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| 3UTR GCA 72 bp | ACATGTTTAAGACAGGACTACAGGCAAGATCCAAACTaGCTGATGGCAAGGTGTGACATCTGCATTCACGTC | + |
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Preference number: 3 (lower is better) Translates to: TCLRQDYRQDPN*LMARCDICIHV Trigger: GACGTGAATGCAGATGTCACACCTTGCCATCAGGCAGTTTGGATCTTGCCTGTAGTCCTGTCTTAAACATGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| 3UTR GCA 72 bp | TTCTGTATAACTGACCATGAACCACAGATGCACTCCTaGACTCTTATCAATACCTGCGGCTTTACAGCTACC | + |
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Preference number: 3 (lower is better) Translates to: FCITDHEPQMHS*TLINTCGFTAT Trigger: GGTAGCTGTAAAGCCGCAGGTATTGATAAGAGTGCAGGAGTGCATCTGTGGTTCATGGTCAGTTATACAGAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| 3UTR TCA 72 bp | TTCCTGCCATGCCAGTCATGCCATGGACTAAACCTCTaGAATGTTAGCAAGTCCCAATTAAGTGCTTTCCTT | + |
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Preference number: 3 (lower is better) Translates to: FLPCQSCHGLNL*NVSKSQLSAFL Trigger: AAGGAAAGCACTTAATTGGGACTTGCTAACATTTCAGAGGTTTAGTCCATGGCATGACTGGCATGGCAGGAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| 3UTR-3UTR CAA 90 bp | TGTTGGAGGAAGTATGTCACTATGGTAGGCTTTGAAACTTCAAAAGCCCAAGCCCAGCTGAGATATCAGTaGTCAAAACCCCAAATACAG | + |
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Preference number: 3 (lower is better) Translates to: CWRKYVTMVGFETSKAQAQLRYQ*SKPQIQ Trigger: CTGTATTTGGGGTTTTGACAACTGATATCTCAGCTG...GGCTTGGGCTTTTGAAGTTTCAAAGCCTACCATAGTGACATACTTCCTCCAACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| 3UTR TCA 72 bp | TTCCACACGACCACAATACTCATGTTTGACAGTTCATaGTTGTCAAATACCAGGACAATTTCCAGGGCACTC | + |
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Preference number: 3 (lower is better) Translates to: FHTTTILMFDSS*LSNTRTISRAL Trigger: GAGTGCCCTGGAAATTGTCCTGGTATTTGACAATCATGAACTGTCAAACATGAGTATTGTGGTCGTGTGGAA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| 3UTR TCA 72 bp | CATCACGAAGTCACAGTTTCTCAAGAGATAGTTCAATaGAAGCAGTGCAGTGCAGCTGAGATATCAGTTGTC | + |
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Preference number: 3 (lower is better) Translates to: HHEVTVSQEIVQ*KQCSAAEISVV Trigger: GACAACTGATATCTCAGCTGCACTGCACTGCTTTCATTGAACTATCTCTTGAGAAACTGTGACTTCGTGATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| 3UTR TCA 72 bp | TATAACTATGTAACCATTCACTCACTGCAGAAAACCTaGCCTTTGGCTCTCCCATACAGTCCATGTTGCTGT | + |
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Preference number: 3 (lower is better) Translates to: YNYVTIHSLQKT*PLALPYSPCCC Trigger: ACAGCAACATGGACTGTATGGGAGAGCCAAAGGTCAGGTTTTCTGCAGTGAGTGAATGGTTACATAGTTATA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| 3UTR-3UTR CAA 90 bp | ATCTATAATAGTAGTAGTGCAGTGGGGAAAATATTGTCATCCTTACTGGGATCCCATATATTTGAATGTTaGGTCCTCGGGGAGTGGCAC | + |
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Preference number: 3 (lower is better) Translates to: IYNSSSAVGKILSSLLGSHIFEC*VLGEWH Trigger: GTGCCACTCCCCGAGGACCAAACATTCAAATATATG...GGATCCCAGTAAGGATGACAATATTTTCCCCACTGCACTACTACTATTATAGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| 3UTR-3UTR CAA 90 bp | TCTGGATGTAGAACACTTGGTTCCTTTCCCAGAACCATGTTTACCTATGTGCTGCCACAATACTCATGTTaGACAGTTCATGATTGTCAA | + |
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Preference number: 3 (lower is better) Translates to: SGCRTLGSFPRTMFTYVLPQYSC*TVHDCQ Trigger: TTGACAATCATGAACTGTCAAACATGAGTATTGTGG...CAGCACATAGGTAAACATGGTTCTGGGAAAGGAACCAAGTGTTCTACATCCAGA 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| 3UTR TCA 72 bp | TCAAGAGATAGTTCAATGAAAGCAGTGCAGTGCAGCTaGGATATCAGTTGTCAAAACCCCAAATACAGAATC | + |
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Preference number: 3 (lower is better) Translates to: SRDSSMKAVQCS*DISCQNPKYRI Trigger: GATTCTGTATTTGGGGTTTTGACAACTGATATCTCAGCTGCACTGCACTGCTTTCATTGAACTATCTCTTGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| 3UTR-3UTR CAA 90 bp | ATCTATAATAGTAGTAGTGCAGTGGGGAAAATATTGTCATCCTTACTGGGATCCAGGTGTATTTGTCCATaGATTAACTTTATAGCTGCC | + |
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Preference number: 3 (lower is better) Translates to: IYNSSSAVGKILSSLLGSRCICP*INFIAA Trigger: GGCAGCTATAAAGTTAATCAATGGACAAATACACCT...GGATCCCAGTAAGGATGACAATATTTTCCCCACTGCACTACTACTATTATAGAT 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| 3UTR TCA 72 bp | AAAAGCATACAAGTGGATCATATAGCTCACTGTCTTTaGGATTGTTACACAAATCCTCAAAAATCCTTGGTT | + |
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Preference number: 3 (lower is better) Translates to: KSIQVDHIAHCL*DCYTNPQKSLV Trigger: AACCAAGGATTTTTGAGGATTTGTGTAACAATCTCAAAGACAGTGAGCTATATGATCCACTTGTATGCTTTT 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS-3UTR GCA 90 bp | TTGTTGTCTGGAAATCCGCAGTCCAGTTCACAGGTCAGCAACTGCAGCTCCATCGACAGCCTTTCATCTTaGTGTATTAGGCCAGTGTGG | + |
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Preference number: 4 (lower is better) Translates to: LLSGNPQSSSQVSNCSSIDSLSS*CIRPVW Trigger: CCACACTGGCCTAATACAGCAAGATGAAAGGCTGTC...GATGGAGCTGCAGTTGCTGACCTGTGAACTGGACTGCGGATTTCCAGACAACAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159567.2 |
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| 3UTR CAA 72 bp | GCACTATTTGAAAGAGATGGGACGGGATGGCCTTGTTaGAGTAGGTGTGACCCTGTTGGAGGAAGTATGTCA | + |
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Preference number: 4 (lower is better) Translates to: ALFERDGTGWPC*SRCDPVGGSMS Trigger: TGACATACTTCCTCCAACAGGGTCACACCTACTCAAACAAGGCCATCCCGTCCCATCTCTTTCAAATAGTGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS-3UTR TCA 90 bp | CACTGGAAGACACTCATGTTTTGGACAAGACCAAGAACCTGTTTAGAAAGGTTCTCTCGGAAGGCTGCTTaGGACAGCCTTTCATCTTGC | + |
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Preference number: 4 (lower is better) Translates to: HWKTLMFWTRPRTCLERFSRKAA*DSLSSC Trigger: GCAAGATGAAAGGCTGTCTCAAGCAGCCTTCCGAGA...GAACCTTTCTAAACAGGTTCTTGGTCTTGTCCAAAACATGAGTGTCTTCCAGTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159567.2 |
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| CDS-3UTR GCA 90 bp | GATATCAGTTGTCAAAACCCCAAATACAGAATCATCATAGAGCAGCCAGCACACCTCCGCACCCTTGTGTaGATCCATCAGTGCAATGTC | + |
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Preference number: 4 (lower is better) Translates to: DISCQNPKYRIIIEQPAHLRTLV*IHQCNV Trigger: GACATTGCACTGATGGATGCACACAAGGGTGCGGAG...GTGTGCTGGCTGCTCTATGATGATTCTGTATTTGGGGTTTTGACAACTGATATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS-3UTR CCA 90 bp | TGTTTAGAAAGGTTCTTTGGAGCAACTCCCGTCTTTGTTGTCTGGAAATCCGCAACAAGCCAACCGCCTTaGACAGTTTCACAGTGCACT | + |
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Preference number: 4 (lower is better) Translates to: CLERFFGATPVFVVWKSATSQPP*TVSQCT Trigger: AGTGCACTGTGAAACTGTCCAAGGCGGTTGGCTTGT...TGCGGATTTCCAGACAACAAAGACGGGAGTTGCTCCAAAGAACCTTTCTAAACA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159567.2 |
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| 3UTR CAA 72 bp | CTCTTCCTGCTGCCTGTTGATCTGGATGTAGAACACTaGGTTCCTTTCCCAGAACCATGTTTACCTATGTGC | + |
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Preference number: 4 (lower is better) Translates to: LFLLPVDLDVEH*VPFPEPCLPMC Trigger: GCACATAGGTAAACATGGTTCTGGGAAAGGAACCAAGTGTTCTACATCCAGATCAACAGGCAGCAGGAAGAG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS-3UTR TCA 90 bp | TCTGGATGTAGAACACTTGGTTCCTTTCCCAGAACCATGTTTACCTATGTGCTGAAGCTTCCCTTATACTaGGGTGCAAGGGAACATCTC | + |
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Preference number: 4 (lower is better) Translates to: SGCRTLGSFPRTMFTYVLKLPLY*GAREHL Trigger: GAGATGTTCCCTTGCACCTCAGTATAAGGGAAGCTT...CAGCACATAGGTAAACATGGTTCTGGGAAAGGAACCAAGTGTTCTACATCCAGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS-3UTR GCA 90 bp | GATATCAGTTGTCAAAACCCCAAATACAGAATCATCATAGAGCAGCCAGCACACGTGTGCATCCATCAGTaGAATGTCCTGAGGTGTGGA | + |
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Preference number: 4 (lower is better) Translates to: DISCQNPKYRIIIEQPAHVCIHQ*NVLRCG Trigger: TCCACACCTCAGGACATTGCACTGATGGATGCACAC...GTGTGCTGGCTGCTCTATGATGATTCTGTATTTGGGGTTTTGACAACTGATATC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS-3UTR GCA 90 bp | ACAAGACCAAGAACCTGTTTAGAAAGGTTCTTTGGAGCAACTCCCGTCTTTGTTTTTCACAGTGCACTGTaGAAAGTTCCTCCCGCTGAG | + |
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Preference number: 4 (lower is better) Translates to: TRPRTCLERFFGATPVFVFHSAL*KVPPAE Trigger: CTCAGCGGGAGGAACTTTGCACAGTGCACTGTGAAA...AACAAAGACGGGAGTTGCTCCAAAGAACCTTTCTAAACAGGTTCTTGGTCTTGT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000159567.2 |
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| CDS-3UTR CCA 90 bp | CCAAGAACCTGTTTAGAAAGGTTCTTTGGAGCAACTCCCGTCTTTGTTGTCTGGCAGGTTCATCATCTTTaGAATGGAAGGACCATACAC | + |
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Preference number: 4 (lower is better) Translates to: PRTCLERFFGATPVFVVWQVHHL*NGRTIH Trigger: GTGTATGGTCCTTCCATTCCAAAGATGATGAACCTG...CCAGACAACAAAGACGGGAGTTGCTCCAAAGAACCTTTCTAAACAGGTTCTTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159567.2 |
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| CDS-3UTR GCA 90 bp | ATCTATAATAGTAGTAGTGCAGTGGGGAAAATATTGTCATCCTTACTGGGATCCCCTTCTATAGGCTTCTaGTTAGGAAGTCCTCGGGAC | + |
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Preference number: 4 (lower is better) Translates to: IYNSSSAVGKILSSLLGSPSIGF*LGSPRD Trigger: GTCCCGAGGACTTCCTAAGCAGAAGCCTATAGAAGG...GGATCCCAGTAAGGATGACAATATTTTCCCCACTGCACTACTACTATTATAGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS-3UTR CCA 90 bp | TCTGGATGTAGAACACTTGGTTCCTTTCCCAGAACCATGTTTACCTATGTGCTGCAGGTTCATCATCTTTaGAATGGAAGGACCATACAC | + |
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Preference number: 4 (lower is better) Translates to: SGCRTLGSFPRTMFTYVLQVHHL*NGRTIH Trigger: GTGTATGGTCCTTCCATTCCAAAGATGATGAACCTG...CAGCACATAGGTAAACATGGTTCTGGGAAAGGAACCAAGTGTTCTACATCCAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS-3UTR CCA 90 bp | ATCTATAATAGTAGTAGTGCAGTGGGGAAAATATTGTCATCCTTACTGGGATCCCAATGTCCTGAGGTGTaGAGACAATCACAGCACCTG | + |
|
Preference number: 4 (lower is better) Translates to: IYNSSSAVGKILSSLLGSQCPEV*RQSQHL Trigger: CAGGTGCTGTGATTGTCTCCACACCTCAGGACATTG...GGATCCCAGTAAGGATGACAATATTTTCCCCACTGCACTACTACTATTATAGAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS-3UTR TCA 90 bp | GATATCAGTTGTCAAAACCCCAAATACAGAATCATCATAGAGCAGCCAGCACACGAAGTCCTCGGGACATaGTTTGTGTTCTTCTTTGTT | + |
|
Preference number: 4 (lower is better) Translates to: DISCQNPKYRIIIEQPAHEVLGT*FVFFFV Trigger: AACAAAGAAGAACACAAATCATGTCCCGAGGACTTC...GTGTGCTGGCTGCTCTATGATGATTCTGTATTTGGGGTTTTGACAACTGATATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS-3UTR TCA 90 bp | ATCTATAATAGTAGTAGTGCAGTGGGGAAAATATTGTCATCCTTACTGGGATCCATCAGTGCAATGTCCTaGGGTGTGGAGACAATCACA | + |
|
Preference number: 4 (lower is better) Translates to: IYNSSSAVGKILSSLLGSISAMS*GVETIT Trigger: TGTGATTGTCTCCACACCTCAGGACATTGCACTGAT...GGATCCCAGTAAGGATGACAATATTTTCCCCACTGCACTACTACTATTATAGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS-3UTR TCA 90 bp | ATCTATAATAGTAGTAGTGCAGTGGGGAAAATATTGTCATCCTTACTGGGATCCGAAAAGACAACTGGTTaGCCCATATCCGAAGCTTCC | + |
|
Preference number: 4 (lower is better) Translates to: IYNSSSAVGKILSSLLGSEKTTG*PISEAS Trigger: GGAAGCTTCGGATATGGGTCAACCAGTTGTCTTTTC...GGATCCCAGTAAGGATGACAATATTTTCCCCACTGCACTACTACTATTATAGAT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS-3UTR CCA 90 bp | GATATCAGTTGTCAAAACCCCAAATACAGAATCATCATAGAGCAGCCAGCACACAAGACACTCATGTTTTaGACAAGACCAAGAACAGGC | + |
|
Preference number: 4 (lower is better) Translates to: DISCQNPKYRIIIEQPAHKTLMF*TRPRTG Trigger: GCCTGTTCTTGGTCTTGTCCAAAACATGAGTGTCTT...GTGTGCTGGCTGCTCTATGATGATTCTGTATTTGGGGTTTTGACAACTGATATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS-3UTR CCA 90 bp | AGGAAGTATGTCACTATGGTAGGCTTTGAAACTTCAAAAGCCCAAGCCAGGCCTTTACATTTTGGACACTaGAAGACACTCATGTTTTGG | + |
|
Preference number: 4 (lower is better) Translates to: RKYVTMVGFETSKAQARPLHFGH*KTLMFW Trigger: CCAAAACATGAGTGTCTTCCAGTGTCCAAAATGTAA...AGGCCTGGCTTGGGCTTTTGAAGTTTCAAAGCCTACCATAGTGACATACTTCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS-3UTR CCA 90 bp | ACTCACTGCAGAAAACCTGACCTTTGGCTCTCCCATACAGTCCATGTTGCTGTTTTTGTGTTTACATTTTaGACACTGGAAGACACTCAT | + |
|
Preference number: 4 (lower is better) Translates to: THCRKPDLWLSHTVHVAVFVFTF*TLEDTH Trigger: ATGAGTGTCTTCCAGTGTCCAAAATGTAAACACAAA...AACAGCAACATGGACTGTATGGGAGAGCCAAAGGTCAGGTTTTCTGCAGTGAGT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS-3UTR CCA 90 bp | CACTGGAAGACACTCATGTTTTGGACAAGACCAAGAACCTGTTTAGAAAGGTTCTCATCATCTTTGGAATaGAAGGACCATACACATCCA | + |
|
Preference number: 4 (lower is better) Translates to: HWKTLMFWTRPRTCLERFSSSLE*KDHTHP Trigger: TGGATGTGTATGGTCCTTCCATTCCAAAGATGATGA...GAACCTTTCTAAACAGGTTCTTGGTCTTGTCCAAAACATGAGTGTCTTCCAGTG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159567.2 |
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| CDS-3UTR CCA 90 bp | ATCTATAATAGTAGTAGTGCAGTGGGGAAAATATTGTCATCCTTACTGGGATCCTCATCATCTTTGGAATaGAAGGACCATACACATCCA | + |
|
Preference number: 4 (lower is better) Translates to: IYNSSSAVGKILSSLLGSSSSLE*KDHTHP Trigger: TGGATGTGTATGGTCCTTCCATTCCAAAGATGATGA...GGATCCCAGTAAGGATGACAATATTTTCCCCACTGCACTACTACTATTATAGAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| 3UTR CAA 72 bp | TCAATCTATAATAGTAGTAGTGCAGTGGGGAAAATATaGTCATCCTTACTGGGATCCACCATGTTGCTTTTT | + |
|
Preference number: 4 (lower is better) Translates to: SIYNSSSAVGKI*SSLLGSTMLLF Trigger: AAAAAGCAACATGGTGGATCCCAGTAAGGATGACAATATTTTCCCCACTGCACTACTACTATTATAGATTGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| 3UTR CAA 72 bp | CAAAAGCATACAAGTGGATCATATAGCTCACTGTCTTaGAGATTGTTACACAAATCCTCAAAAATCCTTGGT | + |
|
Preference number: 4 (lower is better) Translates to: QKHTSGSYSSLS*RLLHKSSKILG Trigger: ACCAAGGATTTTTGAGGATTTGTGTAACAATCTCAAAGACAGTGAGCTATATGATCCACTTGTATGCTTTTG 36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS CCA 90 bp | TGTGTTCTTCTTTGTTTCAAGGCCTCACTCTCAGCGCCTAATAACTaGCGCCCACAACCCAAAGCTCGGCACCCCCGGGGCGGGACAGTG | + |
|
Preference number: 5 (lower is better) Translates to: CVLLCFKASLSAPNN*RPQPKARHPRGGTV Trigger: CACTGTCCCGCCCCGGGGGTGCCGAGCTTTGGGTTGTGGGCGCCAGTTATTAGGCGCTGAGAGTGAGGCCTTGAAACAAAGAAGAACACA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS GCA 90 bp | CGCCTTGGACGAATCATTTGCTGCCAGCGCAAGAGCAAGGTTCACTaGGGTGGTAGACTTTCCAACACCACCCTTTCCAGAGGCCACAAC | + |
|
Preference number: 5 (lower is better) Translates to: RLGRIICCQRKSKVH*GGRLSNTTLSRGHN Trigger: GTTGTGGCCTCTGGAAAGGGTGGTGTTGGAAAGTCTACCACCGCAGTGAACCTTGCTCTTGCGCTGGCAGCAAATGATTCGTCCAAGGCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
||
| CDS CCA 90 bp | GAATGGAAGGACCATACACATCCACATCTAACAAGCCAACCGCCTTaGACGAATCATTTGCTGCCAGCGCAAGAGCAAGGTTCACTGCGG | + |
|
Preference number: 5 (lower is better) Translates to: EWKDHTHPHLTSQPP*TNHLLPAQEQGSLR Trigger: CCGCAGTGAACCTTGCTCTTGCGCTGGCAGCAAATGATTCGTCCAAGGCGGTTGGCTTGTTAGATGTGGATGTGTATGGTCCTTCCATTC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS TCA 90 bp | CGAAACATCTCCGCACCCTTGTGTGCATCCATCAGTGCAATGTCCTaGGGTGTGGAGACAATCACAGCACCTGAAATGGGAATATTTTGT | + |
|
Preference number: 5 (lower is better) Translates to: RNISAPLCASISAMS*GVETITAPEMGIFC Trigger: ACAAAATATTCCCATTTCAGGTGCTGTGATTGTCTCCACACCTCAGGACATTGCACTGATGGATGCACACAAGGGTGCGGAGATGTTTCG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS CCA 90 bp | TCTCCGCACCCTTGTGTGCATCCATCAGTGCAATGTCCTGAGGTGTaGAGACAATCACAGCACCTGAAATGGGAATATTTTGTGAAACTG | + |
|
Preference number: 5 (lower is better) Translates to: SPHPCVHPSVQCPEV*RQSQHLKWEYFVKL Trigger: CAGTTTCACAAAATATTCCCATTTCAGGTGCTGTGATTGTCTCCACACCTCAGGACATTGCACTGATGGATGCACACAAGGGTGCGGAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS CCA 90 bp | ACTTCAATCTTCTCACCACTTCGGAAGCAATATGCAGGTAAGCTTTaGCCTCATCACTTCCAGGCTGAGAAAAGACAACTGGTTGACCCA | + |
|
Preference number: 5 (lower is better) Translates to: TSIFSPLRKQYAGKL*PHHFQAEKRQLVDP Trigger: TGGGTCAACCAGTTGTCTTTTCTCAGCCTGGAAGTGATGAGGCCAAAGCTTACCTGCATATTGCTTCCGAAGTGGTGAGAAGATTGAAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS-3UTR CAA 90 bp | AGGAAGTATGTCACTATGGTAGGCTTTGAAACTTCAAAAGCCCAAGCCAGGCCTCCAAGAACAGGCACATaGACTTTCCGAAACATCTCC | + |
|
Preference number: 5 (lower is better) Translates to: RKYVTMVGFETSKAQARPPRTGT*TFRNIS Trigger: GGAGATGTTTCGGAAAGTCAATGTGCCTGTTCTTGG...AGGCCTGGCTTGGGCTTTTGAAGTTTCAAAGCCTACCATAGTGACATACTTCCT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS-3UTR CAA 90 bp | ATGTTTTGGACAAGACCAAGAACCTGTTTAGAAAGGTTCTTTGGAGCAACTCCCCTCTCGGAAGGCTGCTaGAGACAGCCTTTCATCTTG | + |
|
Preference number: 5 (lower is better) Translates to: MFWTRPRTCLERFFGATPLSEGC*RQPFIL Trigger: CAAGATGAAAGGCTGTCTCAAGCAGCCTTCCGAGAG...GGGAGTTGCTCCAAAGAACCTTTCTAAACAGGTTCTTGGTCTTGTCCAAAACAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000159567.2 |
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| CDS TCA 90 bp | GAGAAAAGACAACTGGTTGACCCATATCCGAAGCTTCCCTTATACTaGGGTGCAAGGGAACATCTCCTAGAACATCAAGATCAAGGGTCT | + |
|
Preference number: 5 (lower is better) Translates to: EKRQLVDPYPKLPLY*GAREHLLEHQDQGS Trigger: AGACCCTTGATCTTGATGTTCTAGGAGATGTTCCCTTGCACCTCAGTATAAGGGAAGCTTCGGATATGGGTCAACCAGTTGTCTTTTCTC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
||
| CDS GCA 90 bp | CCAGAGGCCACAACAATGACTTCTCTAACACCTTCTATAGGCTTCTaGTTAGGAAGTCCTCGGGACATGATTTGTGTTCTTCTTTGTTTC | + |
|
Preference number: 5 (lower is better) Translates to: PEATTMTSLTPSIGF*LGSPRDMICVLLCF Trigger: GAAACAAAGAAGAACACAAATCATGTCCCGAGGACTTCCTAAGCAGAAGCCTATAGAAGGTGTTAGAGAAGTCATTGTTGTGGCCTCTGG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS-3UTR CAA 90 bp | ATCTATAATAGTAGTAGTGCAGTGGGGAAAATATTGTCATCCTTACTGGGATCCAACATCTCCGCACCCTaGTGTGCATCCATCAGTGCA | + |
|
Preference number: 5 (lower is better) Translates to: IYNSSSAVGKILSSLLGSNISAP*CASISA Trigger: TGCACTGATGGATGCACACAAGGGTGCGGAGATGTT...GGATCCCAGTAAGGATGACAATATTTTCCCCACTGCACTACTACTATTATAGAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS-3UTR CAA 90 bp | TCTGGATGTAGAACACTTGGTTCCTTTCCCAGAACCATGTTTACCTATGTGCTGGAAGACACTCATGTTTaGGACAAGACCAAGAACAGG | + |
|
Preference number: 5 (lower is better) Translates to: SGCRTLGSFPRTMFTYVLEDTHV*DKTKNR Trigger: CCTGTTCTTGGTCTTGTCCAAAACATGAGTGTCTTC...CAGCACATAGGTAAACATGGTTCTGGGAAAGGAACCAAGTGTTCTACATCCAGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS-3UTR CAA 90 bp | TCTGGATGTAGAACACTTGGTTCCTTTCCCAGAACCATGTTTACCTATGTGCTGTCAGGTTCATCATCTTaGGAATGGAAGGACCATACA | + |
|
Preference number: 5 (lower is better) Translates to: SGCRTLGSFPRTMFTYVLSGSSS*EWKDHT Trigger: TGTATGGTCCTTCCATTCCAAAGATGATGAACCTGA...CAGCACATAGGTAAACATGGTTCTGGGAAAGGAACCAAGTGTTCTACATCCAGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS-3UTR CAA 90 bp | GATATCAGTTGTCAAAACCCCAAATACAGAATCATCATAGAGCAGCCAGCACACGATTTGTGTTCTTCTTaGTTTCAAGGCCTCACTCTC | + |
|
Preference number: 5 (lower is better) Translates to: DISCQNPKYRIIIEQPAHDLCSS*FQGLTL Trigger: GAGAGTGAGGCCTTGAAACAAAGAAGAACACAAATC...GTGTGCTGGCTGCTCTATGATGATTCTGTATTTGGGGTTTTGACAACTGATATC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS-3UTR CAA 90 bp | CACTGGAAGACACTCATGTTTTGGACAAGACCAAGAACCTGTTTAGAAAGGTTCTCAGGTTCATCATCTTaGGAATGGAAGGACCATACA | + |
|
Preference number: 5 (lower is better) Translates to: HWKTLMFWTRPRTCLERFSGSSS*EWKDHT Trigger: TGTATGGTCCTTCCATTCCAAAGATGATGAACCTGA...GAACCTTTCTAAACAGGTTCTTGGTCTTGTCCAAAACATGAGTGTCTTCCAGTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159567.2 |
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| CDS-3UTR CAA 90 bp | TGTTGGAGGAAGTATGTCACTATGGTAGGCTTTGAAACTTCAAAAGCCCAAGCCCAACCAAAAAGCCCATaGACATACAAGCAATACCAT | + |
|
Preference number: 5 (lower is better) Translates to: CWRKYVTMVGFETSKAQAQPKSP*TYKQYH Trigger: ATGGTATTGCTTGTATGTCAATGGGCTTTTTGGTTG...GGCTTGGGCTTTTGAAGTTTCAAAGCCTACCATAGTGACATACTTCCTCCAACA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS-3UTR CAA 90 bp | TGTTGGAGGAAGTATGTCACTATGGTAGGCTTTGAAACTTCAAAAGCCCAAGCCGCCTCATTAGGTTATTaGGTGATAATTCTGGATTTC | + |
|
Preference number: 5 (lower is better) Translates to: CWRKYVTMVGFETSKAQAASLGY*VIILDF Trigger: GAAATCCAGAATTATCACCAAATAACCTAATGAGGC...GGCTTGGGCTTTTGAAGTTTCAAAGCCTACCATAGTGACATACTTCCTCCAACA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS-3UTR CAA 90 bp | ATGTTTTGGACAAGACCAAGAACCTGTTTAGAAAGGTTCTTTGGAGCAACTCCCCAACCAAAAAGCCCATaGACATACAAGCAATACCAT | + |
|
Preference number: 5 (lower is better) Translates to: MFWTRPRTCLERFFGATPQPKSP*TYKQYH Trigger: ATGGTATTGCTTGTATGTCAATGGGCTTTTTGGTTG...GGGAGTTGCTCCAAAGAACCTTTCTAAACAGGTTCTTGGTCTTGTCCAAAACAT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000159567.2 |
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| CDS-3UTR CAA 90 bp | ATCTATAATAGTAGTAGTGCAGTGGGGAAAATATTGTCATCCTTACTGGGATCCAGAAAAGACAACTGGTaGACCCATATCCGAAGCTTC | + |
|
Preference number: 5 (lower is better) Translates to: IYNSSSAVGKILSSLLGSRKDNW*THIRSF Trigger: GAAGCTTCGGATATGGGTCAACCAGTTGTCTTTTCT...GGATCCCAGTAAGGATGACAATATTTTCCCCACTGCACTACTACTATTATAGAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS-3UTR CAA 90 bp | ATGTTTTGGACAAGACCAAGAACCTGTTTAGAAAGGTTCTTTGGAGCAACTCCCGCCTCATTAGGTTATTaGGTGATAATTCTGGATTTC | + |
|
Preference number: 5 (lower is better) Translates to: MFWTRPRTCLERFFGATPASLGY*VIILDF Trigger: GAAATCCAGAATTATCACCAAATAACCTAATGAGGC...GGGAGTTGCTCCAAAGAACCTTTCTAAACAGGTTCTTGGTCTTGTCCAAAACAT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000159567.2 |
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| CDS-3UTR CAA 90 bp | ATCTATAATAGTAGTAGTGCAGTGGGGAAAATATTGTCATCCTTACTGGGATCCTCTGTGCTAGTTTTCTaGCACCATCAGCACCAAAAA | + |
|
Preference number: 5 (lower is better) Translates to: IYNSSSAVGKILSSLLGSSVLVF*HHQHQK Trigger: TTTTTGGTGCTGATGGTGCAAGAAAACTAGCACAGA...GGATCCCAGTAAGGATGACAATATTTTCCCCACTGCACTACTACTATTATAGAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS GCA 72 bp | CAAGCCAACCGCCTTGGACAGTTTCACAGTGCACTGTaGAAAGTTCCTCCCGCTGAGCGTGGAGAGCGCAGG | + |
|
Preference number: 6 (lower is better) Translates to: QANRLGQFHSAL*KVPPAERGERR Trigger: CCTGCGCTCTCCACGCTCAGCGGGAGGAACTTTGCACAGTGCACTGTGAAACTGTCCAAGGCGGTTGGCTTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159567.2 |
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| CDS TCA 72 bp | ACAGTTTCACAGTGCACTGTGCAAAGTTCCTCCCGCTaGGCGTGGAGAGCGCAGGAGAAAGCCGCATGCTCT | + |
|
Preference number: 6 (lower is better) Translates to: TVSQCTVQSSSR*AWRAQEKAACS Trigger: AGAGCATGCGGCTTTCTCCTGCGCTCTCCACGCTCAGCGGGAGGAACTTTGCACAGTGCACTGTGAAACTGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159567.2 |
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| CDS GCA 72 bp | CCGAAACATCTCCGCACCCTTGTGTGCATCCATCAGTaGAATGTCCTGAGGTGTGGAGACAATCACAGCACC | + |
|
Preference number: 6 (lower is better) Translates to: PKHLRTLVCIHQ*NVLRCGDNHST Trigger: GGTGCTGTGATTGTCTCCACACCTCAGGACATTGCACTGATGGATGCACACAAGGGTGCGGAGATGTTTCGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS TCA 72 bp | TCCGCACCCTTGTGTGCATCCATCAGTGCAATGTCCTaGGGTGTGGAGACAATCACAGCACCTGAAATGGGA | + |
|
Preference number: 6 (lower is better) Translates to: SAPLCASISAMS*GVETITAPEMG Trigger: TCCCATTTCAGGTGCTGTGATTGTCTCCACACCTCAGGACATTGCACTGATGGATGCACACAAGGGTGCGGA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS TCA 72 bp | GGAGAAAGCCGCATGCTCTTCTCTCGGAAGGCTGCTTaGGACAGCCTTTCATCTTGCTGTATTAGGCCAGTG | + |
|
Preference number: 6 (lower is better) Translates to: GESRMLFSRKAA*DSLSSCCIRPV Trigger: CACTGGCCTAATACAGCAAGATGAAAGGCTGTCTCAAGCAGCCTTCCGAGAGAAGAGCATGCGGCTTTCTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159567.2 |
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| CDS GCA 72 bp | CGAATCATTTGCTGCCAGCGCAAGAGCAAGGTTCACTaGGGTGGTAGACTTTCCAACACCACCCTTTCCAGA | + |
|
Preference number: 6 (lower is better) Translates to: RIICCQRKSKVH*GGRLSNTTLSR Trigger: TCTGGAAAGGGTGGTGTTGGAAAGTCTACCACCGCAGTGAACCTTGCTCTTGCGCTGGCAGCAAATGATTCG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS CAA 72 bp | GGACCATACACATCCACATCTAACAAGCCAACCGCCTaGGACGAATCATTTGCTGCCAGCGCAAGAGCAAGG | + |
|
Preference number: 6 (lower is better) Translates to: GPYTSTSNKPTA*DESFAASARAR Trigger: CCTTGCTCTTGCGCTGGCAGCAAATGATTCGTCCAAGGCGGTTGGCTTGTTAGATGTGGATGTGTATGGTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS CAA 90 bp | GGAATGGAAGGACCATACACATCCACATCTAACAAGCCAACCGCCTaGGACGAATCATTTGCTGCCAGCGCAAGAGCAAGGTTCACTGCG | + |
|
Preference number: 6 (lower is better) Translates to: GMEGPYTSTSNKPTA*DESFAASARARFTA Trigger: CGCAGTGAACCTTGCTCTTGCGCTGGCAGCAAATGATTCGTCCAAGGCGGTTGGCTTGTTAGATGTGGATGTGTATGGTCCTTCCATTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS CAA 90 bp | GGAATGGAAGGACCATACACATCCACATCTAACAAGCCAACCGCCTaGGACAGTTTCACAGTGCACTGTGCAAAGTTCCTCCCGCTGAGC | + |
|
Preference number: 6 (lower is better) Translates to: GMEGPYTSTSNKPTA*DSFTVHCAKFLPLS Trigger: GCTCAGCGGGAGGAACTTTGCACAGTGCACTGTGAAACTGTCCAAGGCGGTTGGCTTGTTAGATGTGGATGTGTATGGTCCTTCCATTCC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159567.2 |
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| CDS CCA 72 bp | GACCATACACATCCACATCTAACAAGCCAACCGCCTTaGACGAATCATTTGCTGCCAGCGCAAGAGCAAGGT | + |
|
Preference number: 6 (lower is better) Translates to: DHTHPHLTSQPP*TNHLLPAQEQG Trigger: ACCTTGCTCTTGCGCTGGCAGCAAATGATTCGTCCAAGGCGGTTGGCTTGTTAGATGTGGATGTGTATGGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
||
| CDS CAA 72 bp | GGCCTCATCACTTCCAGGCTGAGAAAAGACAACTGGTaGACCCATATCCGAAGCTTCCCTTATACTGAGGTG | + |
|
Preference number: 6 (lower is better) Translates to: GLITSRLRKDNW*THIRSFPYTEV Trigger: CACCTCAGTATAAGGGAAGCTTCGGATATGGGTCAACCAGTTGTCTTTTCTCAGCCTGGAAGTGATGAGGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
||
| CDS CAA 72 bp | GGACCATACACATCCACATCTAACAAGCCAACCGCCTaGGACAGTTTCACAGTGCACTGTGCAAAGTTCCTC | + |
|
Preference number: 6 (lower is better) Translates to: GPYTSTSNKPTA*DSFTVHCAKFL Trigger: GAGGAACTTTGCACAGTGCACTGTGAAACTGTCCAAGGCGGTTGGCTTGTTAGATGTGGATGTGTATGGTCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000159567.2 |
||
| CDS GCA 72 bp | GCACCTGAAATGGGAATATTTTGTGAAACTGACAGCTaGACGTCTCCTGTTCCTGGTGGCATGTCCACAACT | + |
|
Preference number: 6 (lower is better) Translates to: APEMGIFCETDS*TSPVPGGMSTT Trigger: AGTTGTGGACATGCCACCAGGAACAGGAGACGTGCAGCTGTCAGTTTCACAAAATATTCCCATTTCAGGTGC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
||
| CDS CCA 72 bp | TTTGGCCTCATCACTTCCAGGCTGAGAAAAGACAACTaGTTGACCCATATCCGAAGCTTCCCTTATACTGAG | + |
|
Preference number: 6 (lower is better) Translates to: FGLITSRLRKDN*LTHIRSFPYTE Trigger: CTCAGTATAAGGGAAGCTTCGGATATGGGTCAACCAGTTGTCTTTTCTCAGCCTGGAAGTGATGAGGCCAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
||
| CDS CCA 72 bp | TTCTCACCACTTCGGAAGCAATATGCAGGTAAGCTTTaGCCTCATCACTTCCAGGCTGAGAAAAGACAACTG | + |
|
Preference number: 6 (lower is better) Translates to: FSPLRKQYAGKL*PHHFQAEKRQL Trigger: CAGTTGTCTTTTCTCAGCCTGGAAGTGATGAGGCCAAAGCTTACCTGCATATTGCTTCCGAAGTGGTGAGAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
||
| CDS TCA 72 bp | CAACTGGTTGACCCATATCCGAAGCTTCCCTTATACTaGGGTGCAAGGGAACATCTCCTAGAACATCAAGAT | + |
|
Preference number: 6 (lower is better) Translates to: QLVDPYPKLPLY*GAREHLLEHQD Trigger: ATCTTGATGTTCTAGGAGATGTTCCCTTGCACCTCAGTATAAGGGAAGCTTCGGATATGGGTCAACCAGTTG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
||
| CDS CCA 72 bp | CCTTGTGTGCATCCATCAGTGCAATGTCCTGAGGTGTaGAGACAATCACAGCACCTGAAATGGGAATATTTT | + |
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Preference number: 6 (lower is better) Translates to: PCVHPSVQCPEV*RQSQHLKWEYF Trigger: AAAATATTCCCATTTCAGGTGCTGTGATTGTCTCCACACCTCAGGACATTGCACTGATGGATGCACACAAGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS CAA 72 bp | GTGTTTACATTTTGGACACTGGAAGACACTCATGTTTaGGACAAGACCAAGAACAGGCACATTGACTTTCCG | + |
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Preference number: 6 (lower is better) Translates to: VFTFWTLEDTHV*DKTKNRHIDFP Trigger: CGGAAAGTCAATGTGCCTGTTCTTGGTCTTGTCCAAAACATGAGTGTCTTCCAGTGTCCAAAATGTAAACAC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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| CDS CAA 90 bp | GGTTATTTGGTGATAATTCTGGATTTCCTCTCAGGTTCATCATCTTaGGAATGGAAGGACCATACACATCCACATCTAACAAGCCAACCG | + |
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Preference number: 6 (lower is better) Translates to: GYLVIILDFLSGSSS*EWKDHTHPHLTSQP Trigger: CGGTTGGCTTGTTAGATGTGGATGTGTATGGTCCTTCCATTCCAAAGATGATGAACCTGAGAGGAAATCCAGAATTATCACCAAATAACC 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000040090.16 ENSMUST00000159567.2 |
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| CDS TCA 72 bp | AACAAGTGGCGCAGTCTCTTCAACCAAAAAGCCCATTaGCATACAAGCAATACCATAATTCAAAAGAGGCCT | + |
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Preference number: 6 (lower is better) Translates to: NKWRSLFNQKAH*HTSNTIIQKRP Trigger: AGGCCTCTTTTGAATTATGGTATTGCTTGTATGTCAATGGGCTTTTTGGTTGAAGAGACTGCGCCACTTGTT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000040090.16 ENSMUST00000159567.2 |
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| CDS GCA 72 bp | ACAACAATGACTTCTCTAACACCTTCTATAGGCTTCTaGTTAGGAAGTCCTCGGGACATGATTTGTGTTCTT | + |
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Preference number: 6 (lower is better) Translates to: TTMTSLTPSIGF*LGSPRDMICVL Trigger: AAGAACACAAATCATGTCCCGAGGACTTCCTAAGCAGAAGCCTATAGAAGGTGTTAGAGAAGTCATTGTTGT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000040090.16 |
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