RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NUBP2 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039183

Ensembl transcript IDs: ENSMUST00000044252.7, ENSMUST00000234261.2, ENSMUST00000234293.2, ENSMUST00000234352.2, ENSMUST00000234489.2, ENSMUST00000234579.2, ENSMUST00000234583.2, ENSMUST00000234597.2, ENSMUST00000234598.2, ENSMUST00000234674.2, ENSMUST00000234928.2, ENSMUST00000234968.2, ENSMUST00000235055.2

Found 261 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp AGCCTAAAAAGGGAACTCCAGCCAGCCGGGCCAGCTCCTCCCCACTaGCGCTGGAGAAGACATTGGTGCACTCAGCGCAGTGTGGGCAGG +
Preference number: 1 (lower is better)
Translates to: SLKRELQPAGPAPPH*RWRRHWCTQRSVGR
Trigger: CCTGCCCACACTGCGCTGAGTGCACCAATGTCTTCTCCAGCGGCAGTGGGGAGGAGCTGGCCCGGCTGGCTGGAGTTCCCTTTTTAGGCT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000235055.2
3UTR CCA 90 bp GGGGCGCAGGGCTTCCATAGTGGCCATGTGCTCATCAGAGGTCCCTaGAGGTGTGTCCACAACCAGATAATCCAGCTGCCCCCAGGCCAC +
Preference number: 1 (lower is better)
Translates to: GAQGFHSGHVLIRGP*RCVHNQIIQLPPGH
Trigger: GTGGCCTGGGGGCAGCTGGATTATCTGGTTGTGGACACACCTCCAGGGACCTCTGATGAGCACATGGCCACTATGGAAGCCCTGCGCCCC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 6 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000235055.2
3UTR GCA 90 bp CCACAAAGACAGGCACCCAGCCATTGTCACACTGGTGCACGGCCTTaGCTTGTGCACGGAGCATGTGTGGTATGCTGGGACCGCACAGGT +
Preference number: 1 (lower is better)
Translates to: PQRQAPSHCHTGARP*LVHGACVVCWDRTG
Trigger: ACCTGTGCGGTCCCAGCATACCACACATGCTCCGTGCACAAGGCAAGGCCGTGCACCAGTGTGACAATGGCTGGGTGCCTGTCTTTGTGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234579.2
ENSMUST00000235055.2
3UTR TCA 90 bp AGCACTGGCCAGCTCCTGTGTGGTGTGGCTATGAGAGCAGCCTGTTaGCCTGGGGCAGAAGTGACTAGGGCTGGACGAAAGCCTATAGGC +
Preference number: 1 (lower is better)
Translates to: STGQLLCGVAMRAAC*PGAEVTRAGRKPIG
Trigger: GCCTATAGGCTTTCGTCCAGCCCTAGTCACTTCTGCCCCAGGTCAACAGGCTGCTCTCATAGCCACACCACACAGGAGCTGGCCAGTGCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 11 transcripts:
ENSMUST00000044252.7
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234674.2
ENSMUST00000234928.2
ENSMUST00000234968.2
3UTR GCA 90 bp TGTGGGCAGGTGAAGCCGCTCATGTTCTCTATGACCCCTATCACCTaGAGCCCAGTCTTCTTACAGAAGGTCAGCTCCCGCCTCACATCC +
Preference number: 1 (lower is better)
Translates to: CGQVKPLMFSMTPIT*SPVFLQKVSSRLTS
Trigger: GGATGTGAGGCGGGAGCTGACCTTCTGTAAGAAGACTGGGCTGCAGGTGATAGGGGTCATAGAGAACATGAGCGGCTTCACCTGCCCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000235055.2
3UTR CCA 90 bp GGCACACAACACAGCATGTGTGGGTCAGTCTCGATGAGAAAGCACTaGCCAGCTCCTGTGTGGTGTGGCTATGAGAGCAGCCTGTTGACC +
Preference number: 1 (lower is better)
Translates to: GTQHSMCGSVSMRKH*PAPVWCGYESSLLT
Trigger: GGTCAACAGGCTGCTCTCATAGCCACACCACACAGGAGCTGGCCAGTGCTTTCTCATCGAGACTGACCCACACATGCTGTGTTGTGTGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 11 transcripts:
ENSMUST00000044252.7
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234674.2
ENSMUST00000234928.2
ENSMUST00000234968.2
3UTR TCA 90 bp TTTTCCAGCAGGAACCCCACAGACATAAGGGAGATGCTCTGCTCCTaGTCCACAAAGACAGGCACCCAGCCATTGTCACACTGGTGCACG +
Preference number: 1 (lower is better)
Translates to: FSSRNPTDIREMLCS*STKTGTQPLSHWCT
Trigger: CGTGCACCAGTGTGACAATGGCTGGGTGCCTGTCTTTGTGGATCAGGAGCAGAGCATCTCCCTTATGTCTGTGGGGTTCCTGCTGGAAAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234579.2
ENSMUST00000235055.2
3UTR TCA 90 bp GTGTCACAAAAGGCACACAACACAGCATGTGTGGGTCAGTCTCGATaGGAAAGCACTGGCCAGCTCCTGTGTGGTGTGGCTATGAGAGCA +
Preference number: 1 (lower is better)
Translates to: VSQKAHNTACVGQSR*ESTGQLLCGVAMRA
Trigger: TGCTCTCATAGCCACACCACACAGGAGCTGGCCAGTGCTTTCTCATCGAGACTGACCCACACATGCTGTGTTGTGTGCCTTTTGTGACAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 11 transcripts:
ENSMUST00000044252.7
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234674.2
ENSMUST00000234928.2
ENSMUST00000234968.2
3UTR CCA 90 bp AATTCCTGGATGAAGTCACGCCCTTCCTCCAAGCTCCTGGTAAGTTaGGAATCCAGGGGGACAGAGCCTGCAATGACAAAGGCCAGGAAA +
Preference number: 1 (lower is better)
Translates to: NSWMKSRPSSKLLVS*ESRGTEPAMTKARK
Trigger: TTTCCTGGCCTTTGTCATTGCAGGCTCTGTCCCCCTGGATTCCCAACTTACCAGGAGCTTGGAGGAAGGGCGTGACTTCATCCAGGAATT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000234968.2
3UTR GCA 90 bp CAGGGCAGACATCCTGTGCACAACTCTCTGGGCTATGGACGTGAGTaGGGAATATGCAGTGCTTTTGGGAAATTCCTGGATGAAGTCACG +
Preference number: 1 (lower is better)
Translates to: QGRHPVHNSLGYGRE*GICSAFGKFLDEVT
Trigger: CGTGACTTCATCCAGGAATTTCCCAAAAGCACTGCATATTCCGCACTCACGTCCATAGCCCAGAGAGTTGTGCACAGGATGTCTGCCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000234968.2
ENSMUST00000235055.2
3UTR-3UTR GCA 90 bp ACAGAGCCTAAAAAGGGAACTCCAGCCAGCCGGGCCAGCTCCTCCCCACTGCCGCCAGCTCCTCCCCACTaGCGCTGGAGAAGACATTGG +
Preference number: 2 (lower is better)
Translates to: TEPKKGTPASRASSSPLPPAPPH*RWRRHW
Trigger: CCAATGTCTTCTCCAGCGGCAGTGGGGAGGAGCTGG...CGGCAGTGGGGAGGAGCTGGCCCGGCTGGCTGGAGTTCCCTTTTTAGGCTCTGT
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000235055.2
3UTR-3UTR GCA 90 bp GGTCCTACAGGCATGCAGCACCAGAAGGCTGCCAGGCGGTCAGGAGCACAGGGCCAGGGGGACAGAGCCTaGAATGACAAAGGCCAGGAA +
Preference number: 2 (lower is better)
Translates to: GPTGMQHQKAARRSGAQGQGDRA*NDKGQE
Trigger: TTCCTGGCCTTTGTCATTGCAGGCTCTGTCCCCCTG...GCCCTGTGCTCCTGACCGCCTGGCAGCCTTCTGGTGCTGCATGCCTGTAGGACC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000234968.2
3UTR-3UTR CCA 90 bp CAGCACCAGAAGGCTGCCAGGCGGTCAGGAGCACAGGGCAGACATCCTGTGCACTGTCAGCCAAGGACATaGGGGCCTGCAGATCTCTGC +
Preference number: 2 (lower is better)
Translates to: QHQKAARRSGAQGRHPVHCQPRT*GPADLC
Trigger: GCAGAGATCTGCAGGCCCCCATGTCCTTGGCTGACA...GTGCACAGGATGTCTGCCCTGTGCTCCTGACCGCCTGGCAGCCTTCTGGTGCTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234598.2
ENSMUST00000234674.2
ENSMUST00000234968.2
3UTR-3UTR CCA 90 bp CTACAGGCATGCAGCACCAGAAGGCTGCCAGGCGGTCAGGAGCACAGGGCAGACTGTCAGCCAAGGACATaGGGGCCTGCAGATCTCTGC +
Preference number: 2 (lower is better)
Translates to: LQACSTRRLPGGQEHRADCQPRT*GPADLC
Trigger: GCAGAGATCTGCAGGCCCCCATGTCCTTGGCTGACA...GTCTGCCCTGTGCTCCTGACCGCCTGGCAGCCTTCTGGTGCTGCATGCCTGTAG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234598.2
ENSMUST00000234674.2
ENSMUST00000234968.2
3UTR-3UTR GCA 90 bp GCATGCAGCACCAGAAGGCTGCCAGGCGGTCAGGAGCACAGGGCAGACATCCTGAAGGTCCTACAGGCATaGAGCACCAGAAGGCTGCCA +
Preference number: 2 (lower is better)
Translates to: ACSTRRLPGGQEHRADILKVLQA*STRRLP
Trigger: TGGCAGCCTTCTGGTGCTGCATGCCTGTAGGACCTT...CAGGATGTCTGCCCTGTGCTCCTGACCGCCTGGCAGCCTTCTGGTGCTGCATGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 9 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234598.2
ENSMUST00000234674.2
ENSMUST00000234968.2
ENSMUST00000235055.2
3UTR-3UTR GCA 90 bp TCCAGGGGGACAGAGCCTAAAAAGGGAACTCCAGCCAGCCGGGCCAGCTCCTCCTGGAGAAGACATTGGTaGACTCAGCGCAGTGTGGGC +
Preference number: 2 (lower is better)
Translates to: SRGTEPKKGTPASRASSSWRRHW*TQRSVG
Trigger: GCCCACACTGCGCTGAGTGCACCAATGTCTTCTCCA...GGAGGAGCTGGCCCGGCTGGCTGGAGTTCCCTTTTTAGGCTCTGTCCCCCTGGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000235055.2
3UTR-3UTR CCA 90 bp CTACAGGCATGCAGCACCAGAAGGCTGCCAGGCGGTCAGGAGCACAGGGCAGACCTCATCAGAGGTCCCTaGAGGTGTGTCCACAACCAG +
Preference number: 2 (lower is better)
Translates to: LQACSTRRLPGGQEHRADLIRGP*RCVHNQ
Trigger: CTGGTTGTGGACACACCTCCAGGGACCTCTGATGAG...GTCTGCCCTGTGCTCCTGACCGCCTGGCAGCCTTCTGGTGCTGCATGCCTGTAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000235055.2
3UTR CAA 90 bp TCCACAAAGACAGGCACCCAGCCATTGTCACACTGGTGCACGGCCTaGCCTTGTGCACGGAGCATGTGTGGTATGCTGGGACCGCACAGG +
Preference number: 2 (lower is better)
Translates to: STKTGTQPLSHWCTA*PCARSMCGMLGPHR
Trigger: CCTGTGCGGTCCCAGCATACCACACATGCTCCGTGCACAAGGCAAGGCCGTGCACCAGTGTGACAATGGCTGGGTGCCTGTCTTTGTGGA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234579.2
ENSMUST00000235055.2
3UTR-3UTR GCA 90 bp TCACGCCCTTCCTCCAAGCTCCTGGTAAGTTGGGAATCCAGGGGGACAGAGCCTCCAGCTCCTCCCCACTaGCGCTGGAGAAGACATTGG +
Preference number: 2 (lower is better)
Translates to: SRPSSKLLVSWESRGTEPPAPPH*RWRRHW
Trigger: CCAATGTCTTCTCCAGCGGCAGTGGGGAGGAGCTGG...AGGCTCTGTCCCCCTGGATTCCCAACTTACCAGGAGCTTGGAGGAAGGGCGTGA
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000235055.2
3UTR-3UTR CCA 90 bp TGGCCAGCTCCTGTGTGGTGTGGCTATGAGAGCAGCCTGTTGACCTGGGGCAGATGTCAGCCAAGGACATaGGGGCCTGCAGATCTCTGC +
Preference number: 2 (lower is better)
Translates to: WPAPVWCGYESSLLTWGRCQPRT*GPADLC
Trigger: GCAGAGATCTGCAGGCCCCCATGTCCTTGGCTGACA...TCTGCCCCAGGTCAACAGGCTGCTCTCATAGCCACACCACACAGGAGCTGGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 11 transcripts:
ENSMUST00000044252.7
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234674.2
ENSMUST00000234928.2
ENSMUST00000234968.2
3UTR-3UTR CCA 90 bp GCCGCTGGAGAAGACATTGGTGCACTCAGCGCAGTGTGGGCAGGTGAAGCCGCTCTCATCAGAGGTCCCTaGAGGTGTGTCCACAACCAG +
Preference number: 2 (lower is better)
Translates to: AAGEDIGALSAVWAGEAALIRGP*RCVHNQ
Trigger: CTGGTTGTGGACACACCTCCAGGGACCTCTGATGAG...AGCGGCTTCACCTGCCCACACTGCGCTGAGTGCACCAATGTCTTCTCCAGCGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000235055.2
3UTR-3UTR CCA 90 bp CACATCCCCAATAGACACCGCCTGTGGTGTGGTGACTACAAGAGCCCCAAGGGGGCACTCAGCGCAGTGTaGGCAGGTGAAGCCGCTCAT +
Preference number: 2 (lower is better)
Translates to: HIPNRHRLWCGDYKSPKGALSAV*AGEAAH
Trigger: ATGAGCGGCTTCACCTGCCCACACTGCGCTGAGTGC...CCCCTTGGGGCTCTTGTAGTCACCACACCACAGGCGGTGTCTATTGGGGATGTG
60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000235055.2
3UTR-3UTR TCA 90 bp GTCAGCTCCCGCCTCACATCCCCAATAGACACCGCCTGTGGTGTGGTGACTACAGTCCCAAAACAGTCCTaGGGGCCTCTGCTCCCAAAG +
Preference number: 2 (lower is better)
Translates to: VSSRLTSPIDTACGVVTTVPKQS*GPLLPK
Trigger: CTTTGGGAGCAGAGGCCCTCAGGACTGTTTTGGGAC...TGTAGTCACCACACCACAGGCGGTGTCTATTGGGGATGTGAGGCGGGAGCTGAC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
3UTR-3UTR TCA 90 bp CACATCCCCAATAGACACCGCCTGTGGTGTGGTGACTACAAGAGCCCCAAGGGGCGCAGTGTGGGCAGGTaGAGCCGCTCATGTTCTCTA +
Preference number: 2 (lower is better)
Translates to: HIPNRHRLWCGDYKSPKGRSVGR*SRSCSL
Trigger: TAGAGAACATGAGCGGCTTCACCTGCCCACACTGCG...CCCCTTGGGGCTCTTGTAGTCACCACACCACAGGCGGTGTCTATTGGGGATGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000235055.2
3UTR-3UTR TCA 90 bp CACTGGCCAGCTCCTGTGTGGTGTGGCTATGAGAGCAGCCTGTTGACCTGGGGCTGGGAAATTCCTGGATaGAGTCACGCCCTTCCTCCA +
Preference number: 2 (lower is better)
Translates to: HWPAPVWCGYESSLLTWGWEIPG*SHALPP
Trigger: TGGAGGAAGGGCGTGACTTCATCCAGGAATTTCCCA...GCCCCAGGTCAACAGGCTGCTCTCATAGCCACACCACACAGGAGCTGGCCAGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000234968.2
3UTR-3UTR GCA 90 bp GAGAAGACATTGGTGCACTCAGCGCAGTGTGGGCAGGTGAAGCCGCTCATGTTCCCAGCTCCTCCCCACTaGCGCTGGAGAAGACATTGG +
Preference number: 2 (lower is better)
Translates to: EKTLVHSAQCGQVKPLMFPAPPH*RWRRHW
Trigger: CCAATGTCTTCTCCAGCGGCAGTGGGGAGGAGCTGG...GAACATGAGCGGCTTCACCTGCCCACACTGCGCTGAGTGCACCAATGTCTTCTC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000235055.2
3UTR-3UTR GCA 90 bp GAAGTCACGCCCTTCCTCCAAGCTCCTGGTAAGTTGGGAATCCAGGGGGACAGACCAGCTCCTCCCCACTaGCGCTGGAGAAGACATTGG +
Preference number: 2 (lower is better)
Translates to: EVTPFLQAPGKLGIQGDRPAPPH*RWRRHW
Trigger: CCAATGTCTTCTCCAGCGGCAGTGGGGAGGAGCTGG...TCTGTCCCCCTGGATTCCCAACTTACCAGGAGCTTGGAGGAAGGGCGTGACTTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000235055.2
3UTR-3UTR CCA 90 bp GAGAAGACATTGGTGCACTCAGCGCAGTGTGGGCAGGTGAAGCCGCTCATGTTCGCACTCAGCGCAGTGTaGGCAGGTGAAGCCGCTCAT +
Preference number: 2 (lower is better)
Translates to: EKTLVHSAQCGQVKPLMFALSAV*AGEAAH
Trigger: ATGAGCGGCTTCACCTGCCCACACTGCGCTGAGTGC...GAACATGAGCGGCTTCACCTGCCCACACTGCGCTGAGTGCACCAATGTCTTCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000235055.2
3UTR-3UTR TCA 90 bp CACATCCCCAATAGACACCGCCTGTGGTGTGGTGACTACAAGAGCCCCAAGGGGCGCTCATGTTCTCTATaGCCCCTATCACCTGCAGCC +
Preference number: 2 (lower is better)
Translates to: HIPNRHRLWCGDYKSPKGRSCSL*PLSPAA
Trigger: GGCTGCAGGTGATAGGGGTCATAGAGAACATGAGCG...CCCCTTGGGGCTCTTGTAGTCACCACACCACAGGCGGTGTCTATTGGGGATGTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000235055.2
3UTR-3UTR GCA 90 bp CCCAATAGACACCGCCTGTGGTGTGGTGACTACAAGAGCCCCAAGGGGCCTGTAAAGGTCCTACAGGCATaGAGCACCAGAAGGCTGCCA +
Preference number: 2 (lower is better)
Translates to: PNRHRLWCGDYKSPKGPVKVLQA*STRRLP
Trigger: TGGCAGCCTTCTGGTGCTGCATGCCTGTAGGACCTT...TACAGGCCCCTTGGGGCTCTTGTAGTCACCACACCACAGGCGGTGTCTATTGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000235055.2
3UTR-3UTR CCA 90 bp GAAGTCACGCCCTTCCTCCAAGCTCCTGGTAAGTTGGGAATCCAGGGGGACAGATGTCAGCCAAGGACATaGGGGCCTGCAGATCTCTGC +
Preference number: 2 (lower is better)
Translates to: EVTPFLQAPGKLGIQGDRCQPRT*GPADLC
Trigger: GCAGAGATCTGCAGGCCCCCATGTCCTTGGCTGACA...TCTGTCCCCCTGGATTCCCAACTTACCAGGAGCTTGGAGGAAGGGCGTGACTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000234968.2
3UTR-3UTR CCA 90 bp TCAGTCTCGATGAGAAAGCACTGGCCAGCTCCTGTGTGGTGTGGCTATGAGAGCGCACTCAGCGCAGTGTaGGCAGGTGAAGCCGCTCAT +
Preference number: 2 (lower is better)
Translates to: SVSMRKHWPAPVWCGYESALSAV*AGEAAH
Trigger: ATGAGCGGCTTCACCTGCCCACACTGCGCTGAGTGC...GCTCTCATAGCCACACCACACAGGAGCTGGCCAGTGCTTTCTCATCGAGACTGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
3UTR-3UTR CCA 90 bp ACAGAGCCTAAAAAGGGAACTCCAGCCAGCCGGGCCAGCTCCTCCCCACTGCCGCTTTTGGGAAATTCCTaGATGAAGTCACGCCCTTCC +
Preference number: 2 (lower is better)
Translates to: TEPKKGTPASRASSSPLPLLGNS*MKSRPS
Trigger: GGAAGGGCGTGACTTCATCCAGGAATTTCCCAAAAG...CGGCAGTGGGGAGGAGCTGGCCCGGCTGGCTGGAGTTCCCTTTTTAGGCTCTGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000235055.2
3UTR-3UTR TCA 90 bp CTAGTGTCAGCCAAGGACATGGGGGCCTGCAGATCTCTGCATGGATGTAATCGCCGCAGTGTGGGCAGGTaGAGCCGCTCATGTTCTCTA +
Preference number: 2 (lower is better)
Translates to: LVSAKDMGACRSLHGCNRRSVGR*SRSCSL
Trigger: TAGAGAACATGAGCGGCTTCACCTGCCCACACTGCG...GCGATTACATCCATGCAGAGATCTGCAGGCCCCCATGTCCTTGGCTGACACTAG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
3UTR-3UTR TCA 90 bp TCAGTCTCGATGAGAAAGCACTGGCCAGCTCCTGTGTGGTGTGGCTATGAGAGCCGCAGTGTGGGCAGGTaGAGCCGCTCATGTTCTCTA +
Preference number: 2 (lower is better)
Translates to: SVSMRKHWPAPVWCGYESRSVGR*SRSCSL
Trigger: TAGAGAACATGAGCGGCTTCACCTGCCCACACTGCG...GCTCTCATAGCCACACCACACAGGAGCTGGCCAGTGCTTTCTCATCGAGACTGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
3UTR-3UTR GCA 90 bp TCCTACAGGCATGCAGCACCAGAAGGCTGCCAGGCGGTCAGGAGCACAGGGCAGCGTGAGTGCGGAATATaGAGTGCTTTTGGGAAATTC +
Preference number: 2 (lower is better)
Translates to: SYRHAAPEGCQAVRSTGQRECGI*SAFGKF
Trigger: GAATTTCCCAAAAGCACTGCATATTCCGCACTCACG...CTGCCCTGTGCTCCTGACCGCCTGGCAGCCTTCTGGTGCTGCATGCCTGTAGGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000234968.2
ENSMUST00000235055.2
3UTR-3UTR CCA 90 bp GAAGTCACGCCCTTCCTCCAAGCTCCTGGTAAGTTGGGAATCCAGGGGGACAGACTCATCAGAGGTCCCTaGAGGTGTGTCCACAACCAG +
Preference number: 2 (lower is better)
Translates to: EVTPFLQAPGKLGIQGDRLIRGP*RCVHNQ
Trigger: CTGGTTGTGGACACACCTCCAGGGACCTCTGATGAG...TCTGTCCCCCTGGATTCCCAACTTACCAGGAGCTTGGAGGAAGGGCGTGACTTC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000235055.2
3UTR-3UTR CCA 90 bp TGGATGAAGTCACGCCCTTCCTCCAAGCTCCTGGTAAGTTGGGAATCCAGGGGGCGCTGGAGAAGACATTaGTGCACTCAGCGCAGTGTG +
Preference number: 2 (lower is better)
Translates to: WMKSRPSSKLLVSWESRGRWRRH*CTQRSV
Trigger: CACACTGCGCTGAGTGCACCAATGTCTTCTCCAGCG...CCCCCTGGATTCCCAACTTACCAGGAGCTTGGAGGAAGGGCGTGACTTCATCCA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000235055.2
3UTR-3UTR CCA 90 bp CACATCCCCAATAGACACCGCCTGTGGTGTGGTGACTACAAGAGCCCCAAGGGGTCAGTGCATGTTTCTTaGGACCTCTCCACACCACGG +
Preference number: 2 (lower is better)
Translates to: HIPNRHRLWCGDYKSPKGSVHVS*DLSTPR
Trigger: CCGTGGTGTGGAGAGGTCCCAAGAAACATGCACTGA...CCCCTTGGGGCTCTTGTAGTCACCACACCACAGGCGGTGTCTATTGGGGATGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000234579.2
ENSMUST00000235055.2
3UTR-3UTR CCA 90 bp GAAGTCACGCCCTTCCTCCAAGCTCCTGGTAAGTTGGGAATCCAGGGGGACAGATCAGTGCATGTTTCTTaGGACCTCTCCACACCACGG +
Preference number: 2 (lower is better)
Translates to: EVTPFLQAPGKLGIQGDRSVHVS*DLSTPR
Trigger: CCGTGGTGTGGAGAGGTCCCAAGAAACATGCACTGA...TCTGTCCCCCTGGATTCCCAACTTACCAGGAGCTTGGAGGAAGGGCGTGACTTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000234579.2
ENSMUST00000235055.2
3UTR-3UTR TCA 90 bp CCGGTAAACCACAGTGTCACAAAAGGCACACAACACAGCATGTGTGGGTCAGTCGTGGGTCAGTCTCGATaGGAAAGCACTGGCCAGCTC +
Preference number: 2 (lower is better)
Translates to: PVNHSVTKGTQHSMCGSVVGQSR*ESTGQL
Trigger: GAGCTGGCCAGTGCTTTCTCATCGAGACTGACCCAC...GACTGACCCACACATGCTGTGTTGTGTGCCTTTTGTGACACTGTGGTTTACCGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 11 transcripts:
ENSMUST00000044252.7
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234674.2
ENSMUST00000234928.2
ENSMUST00000234968.2
3UTR-3UTR TCA 90 bp CACTGGCCAGCTCCTGTGTGGTGTGGCTATGAGAGCAGCCTGTTGACCTGGGGCTGCTTGTTCCAGACATaGAATGTAGGGGAATCAAGA +
Preference number: 2 (lower is better)
Translates to: HWPAPVWCGYESSLLTWGCLFQT*NVGESR
Trigger: TCTTGATTCCCCTACATTTCATGTCTGGAACAAGCA...GCCCCAGGTCAACAGGCTGCTCTCATAGCCACACCACACAGGAGCTGGCCAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 11 transcripts:
ENSMUST00000044252.7
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234674.2
ENSMUST00000234928.2
ENSMUST00000234968.2
3UTR-3UTR TCA 90 bp CTAGTGTCAGCCAAGGACATGGGGGCCTGCAGATCTCTGCATGGATGTAATCGCTGGGAAATTCCTGGATaGAGTCACGCCCTTCCTCCA +
Preference number: 2 (lower is better)
Translates to: LVSAKDMGACRSLHGCNRWEIPG*SHALPP
Trigger: TGGAGGAAGGGCGTGACTTCATCCAGGAATTTCCCA...GCGATTACATCCATGCAGAGATCTGCAGGCCCCCATGTCCTTGGCTGACACTAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000234968.2
3UTR-3UTR CCA 90 bp AGGACAAAGGGCTTGGATGCTGGGTCCTTCCTAAGACGGGGCGGTATGTTTAATTGTCAGCCAAGGACATaGGGGCCTGCAGATCTCTGC +
Preference number: 2 (lower is better)
Translates to: RTKGLDAGSFLRRGGMFNCQPRT*GPADLC
Trigger: GCAGAGATCTGCAGGCCCCCATGTCCTTGGCTGACA...ATTAAACATACCGCCCCGTCTTAGGAAGGACCCAGCATCCAAGCCCTTTGTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 11 transcripts:
ENSMUST00000044252.7
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234674.2
ENSMUST00000234928.2
ENSMUST00000234968.2
3UTR-3UTR CCA 90 bp ACTAGTTTGGTGAAGCTAGTGTCAGCCAAGGACATGGGGGCCTGCAGATCTCTGCTCATCAGAGGTCCCTaGAGGTGTGTCCACAACCAG +
Preference number: 2 (lower is better)
Translates to: TSLVKLVSAKDMGACRSLLIRGP*RCVHNQ
Trigger: CTGGTTGTGGACACACCTCCAGGGACCTCTGATGAG...CAGAGATCTGCAGGCCCCCATGTCCTTGGCTGACACTAGCTTCACCAAACTAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
3UTR CAA 90 bp AAATTCCTGGATGAAGTCACGCCCTTCCTCCAAGCTCCTGGTAAGTaGGGAATCCAGGGGGACAGAGCCTGCAATGACAAAGGCCAGGAA +
Preference number: 2 (lower is better)
Translates to: KFLDEVTPFLQAPGK*GIQGDRACNDKGQE
Trigger: TTCCTGGCCTTTGTCATTGCAGGCTCTGTCCCCCTGGATTCCCAACTTACCAGGAGCTTGGAGGAAGGGCGTGACTTCATCCAGGAATTT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000234968.2
3UTR-3UTR TCA 90 bp ACCAGATGTGCCGGTAAACCACAGTGTCACAAAAGGCACACAACACAGCATGTGGTCCCAAAACAGTCCTaGGGGCCTCTGCTCCCAAAG +
Preference number: 2 (lower is better)
Translates to: TRCAGKPQCHKRHTTQHVVPKQS*GPLLPK
Trigger: CTTTGGGAGCAGAGGCCCTCAGGACTGTTTTGGGAC...CACATGCTGTGTTGTGTGCCTTTTGTGACACTGTGGTTTACCGGCACATCTGGT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 11 transcripts:
ENSMUST00000044252.7
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234674.2
ENSMUST00000234928.2
ENSMUST00000234968.2
3UTR-3UTR TCA 90 bp AGATGTGCCGGTAAACCACAGTGTCACAAAAGGCACACAACACAGCATGTGTGGGTCCCAAAACAGTCCTaGGGGCCTCTGCTCCCAAAG +
Preference number: 2 (lower is better)
Translates to: RCAGKPQCHKRHTTQHVWVPKQS*GPLLPK
Trigger: CTTTGGGAGCAGAGGCCCTCAGGACTGTTTTGGGAC...CCACACATGCTGTGTTGTGTGCCTTTTGTGACACTGTGGTTTACCGGCACATCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 11 transcripts:
ENSMUST00000044252.7
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234674.2
ENSMUST00000234928.2
ENSMUST00000234968.2
3UTR-3UTR TCA 90 bp CATGTTCTCTATGACCCCTATCACCTGCAGCCCAGTCTTCTTACAGAAGGTCAGGTCCCAAAACAGTCCTaGGGGCCTCTGCTCCCAAAG +
Preference number: 2 (lower is better)
Translates to: HVLYDPYHLQPSLLTEGQVPKQS*GPLLPK
Trigger: CTTTGGGAGCAGAGGCCCTCAGGACTGTTTTGGGAC...CTGACCTTCTGTAAGAAGACTGGGCTGCAGGTGATAGGGGTCATAGAGAACATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 6 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
3UTR-3UTR TCA 90 bp CCACAGTGTCACAAAAGGCACACAACACAGCATGTGTGGGTCAGTCTCGATGAGCGCTCATGTTCTCTATaGCCCCTATCACCTGCAGCC +
Preference number: 2 (lower is better)
Translates to: PQCHKRHTTQHVWVSLDERSCSL*PLSPAA
Trigger: GGCTGCAGGTGATAGGGGTCATAGAGAACATGAGCG...CTCATCGAGACTGACCCACACATGCTGTGTTGTGTGCCTTTTGTGACACTGTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
3UTR-3UTR GCA 90 bp AGGACAAAGGGCTTGGATGCTGGGTCCTTCCTAAGACGGGGCGGTATGTTTAATAAGGTCCTACAGGCATaGAGCACCAGAAGGCTGCCA +
Preference number: 2 (lower is better)
Translates to: RTKGLDAGSFLRRGGMFNKVLQA*STRRLP
Trigger: TGGCAGCCTTCTGGTGCTGCATGCCTGTAGGACCTT...ATTAAACATACCGCCCCGTCTTAGGAAGGACCCAGCATCCAAGCCCTTTGTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 11 transcripts:
ENSMUST00000044252.7
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234674.2
ENSMUST00000234928.2
ENSMUST00000234968.2
3UTR-3UTR GCA 90 bp AGGACAAAGGGCTTGGATGCTGGGTCCTTCCTAAGACGGGGCGGTATGTTTAATTGGAGAAGACATTGGTaGACTCAGCGCAGTGTGGGC +
Preference number: 2 (lower is better)
Translates to: RTKGLDAGSFLRRGGMFNWRRHW*TQRSVG
Trigger: GCCCACACTGCGCTGAGTGCACCAATGTCTTCTCCA...ATTAAACATACCGCCCCGTCTTAGGAAGGACCCAGCATCCAAGCCCTTTGTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
3UTR-3UTR GCA 90 bp TCACGCCCTTCCTCCAAGCTCCTGGTAAGTTGGGAATCCAGGGGGACAGAGCCTGTGCGGAATATGCAGTaGTTTTGGGAAATTCCTGGA +
Preference number: 2 (lower is better)
Translates to: SRPSSKLLVSWESRGTEPVRNMQ*FWEIPG
Trigger: TCCAGGAATTTCCCAAAAGCACTGCATATTCCGCAC...AGGCTCTGTCCCCCTGGATTCCCAACTTACCAGGAGCTTGGAGGAAGGGCGTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 8 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000234968.2
ENSMUST00000235055.2
3UTR-3UTR CCA 90 bp AGGACAAAGGGCTTGGATGCTGGGTCCTTCCTAAGACGGGGCGGTATGTTTAATCGCTGGAGAAGACATTaGTGCACTCAGCGCAGTGTG +
Preference number: 2 (lower is better)
Translates to: RTKGLDAGSFLRRGGMFNRWRRH*CTQRSV
Trigger: CACACTGCGCTGAGTGCACCAATGTCTTCTCCAGCG...ATTAAACATACCGCCCCGTCTTAGGAAGGACCCAGCATCCAAGCCCTTTGTCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
3UTR-3UTR CCA 90 bp GAGAAGACATTGGTGCACTCAGCGCAGTGTGGGCAGGTGAAGCCGCTCATGTTCCTTTTGGGAAATTCCTaGATGAAGTCACGCCCTTCC +
Preference number: 2 (lower is better)
Translates to: EKTLVHSAQCGQVKPLMFLLGNS*MKSRPS
Trigger: GGAAGGGCGTGACTTCATCCAGGAATTTCCCAAAAG...GAACATGAGCGGCTTCACCTGCCCACACTGCGCTGAGTGCACCAATGTCTTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000235055.2
3UTR-3UTR TCA 90 bp GAATATGCAGTGCTTTTGGGAAATTCCTGGATGAAGTCACGCCCTTCCTCCAAGGTCCCAAAACAGTCCTaGGGGCCTCTGCTCCCAAAG +
Preference number: 2 (lower is better)
Translates to: EYAVLLGNSWMKSRPSSKVPKQS*GPLLPK
Trigger: CTTTGGGAGCAGAGGCCCTCAGGACTGTTTTGGGAC...CTTGGAGGAAGGGCGTGACTTCATCCAGGAATTTCCCAAAAGCACTGCATATTC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000234968.2
3UTR-3UTR TCA 90 bp AGGCTAAAGGTTAAGGCTGCTATTATCTCAAGGAATCAGGACGCAGGCTATCCCGTGGGTCAGTCTCGATaGGAAAGCACTGGCCAGCTC +
Preference number: 2 (lower is better)
Translates to: RLKVKAAIISRNQDAGYPVGQSR*ESTGQL
Trigger: GAGCTGGCCAGTGCTTTCTCATCGAGACTGACCCAC...GGGATAGCCTGCGTCCTGATTCCTTGAGATAATAGCAGCCTTAACCTTTAGCCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 11 transcripts:
ENSMUST00000044252.7
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234674.2
ENSMUST00000234928.2
ENSMUST00000234968.2
3UTR-3UTR TCA 90 bp ACCAGATGTGCCGGTAAACCACAGTGTCACAAAAGGCACACAACACAGCATGTGCGCTCATGTTCTCTATaGCCCCTATCACCTGCAGCC +
Preference number: 2 (lower is better)
Translates to: TRCAGKPQCHKRHTTQHVRSCSL*PLSPAA
Trigger: GGCTGCAGGTGATAGGGGTCATAGAGAACATGAGCG...CACATGCTGTGTTGTGTGCCTTTTGTGACACTGTGGTTTACCGGCACATCTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
3UTR-3UTR GCA 90 bp TGCGGAATATGCAGTGCTTTTGGGAAATTCCTGGATGAAGTCACGCCCTTCCTCAAGGTCCTACAGGCATaGAGCACCAGAAGGCTGCCA +
Preference number: 2 (lower is better)
Translates to: CGICSAFGKFLDEVTPFLKVLQA*STRRLP
Trigger: TGGCAGCCTTCTGGTGCTGCATGCCTGTAGGACCTT...GAGGAAGGGCGTGACTTCATCCAGGAATTTCCCAAAAGCACTGCATATTCCGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000234968.2
ENSMUST00000235055.2
3UTR-3UTR CCA 90 bp CATGTTCTCTATGACCCCTATCACCTGCAGCCCAGTCTTCTTACAGAAGGTCAGCTCATCAGAGGTCCCTaGAGGTGTGTCCACAACCAG +
Preference number: 2 (lower is better)
Translates to: HVLYDPYHLQPSLLTEGQLIRGP*RCVHNQ
Trigger: CTGGTTGTGGACACACCTCCAGGGACCTCTGATGAG...CTGACCTTCTGTAAGAAGACTGGGCTGCAGGTGATAGGGGTCATAGAGAACATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000235055.2
3UTR-3UTR CCA 90 bp TGCGGAATATGCAGTGCTTTTGGGAAATTCCTGGATGAAGTCACGCCCTTCCTCCGCTGGAGAAGACATTaGTGCACTCAGCGCAGTGTG +
Preference number: 2 (lower is better)
Translates to: CGICSAFGKFLDEVTPFLRWRRH*CTQRSV
Trigger: CACACTGCGCTGAGTGCACCAATGTCTTCTCCAGCG...GAGGAAGGGCGTGACTTCATCCAGGAATTTCCCAAAAGCACTGCATATTCCGCA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000235055.2
3UTR-3UTR TCA 90 bp GCAGAGTTCTGTAAAGTTACCAGATGTGCCGGTAAACCACAGTGTCACAAAAGGGTGGGTCAGTCTCGATaGGAAAGCACTGGCCAGCTC +
Preference number: 2 (lower is better)
Translates to: AEFCKVTRCAGKPQCHKRVGQSR*ESTGQL
Trigger: GAGCTGGCCAGTGCTTTCTCATCGAGACTGACCCAC...CCTTTTGTGACACTGTGGTTTACCGGCACATCTGGTAACTTTACAGAACTCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 11 transcripts:
ENSMUST00000044252.7
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234674.2
ENSMUST00000234928.2
ENSMUST00000234968.2
3UTR-3UTR TCA 90 bp GGGGCGGTATGTTTAATAGCAGAGTTCTGTAAAGTTACCAGATGTGCCGGTAAAGTGGGTCAGTCTCGATaGGAAAGCACTGGCCAGCTC +
Preference number: 2 (lower is better)
Translates to: GAVCLIAEFCKVTRCAGKVGQSR*ESTGQL
Trigger: GAGCTGGCCAGTGCTTTCTCATCGAGACTGACCCAC...TTTACCGGCACATCTGGTAACTTTACAGAACTCTGCTATTAAACATACCGCCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 11 transcripts:
ENSMUST00000044252.7
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234674.2
ENSMUST00000234928.2
ENSMUST00000234968.2
3UTR-3UTR TCA 90 bp TGTAAAGTTACCAGATGTGCCGGTAAACCACAGTGTCACAAAAGGCACACAACACGCAGTGTGGGCAGGTaGAGCCGCTCATGTTCTCTA +
Preference number: 2 (lower is better)
Translates to: CKVTRCAGKPQCHKRHTTRSVGR*SRSCSL
Trigger: TAGAGAACATGAGCGGCTTCACCTGCCCACACTGCG...TGTTGTGTGCCTTTTGTGACACTGTGGTTTACCGGCACATCTGGTAACTTTACA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
3UTR-3UTR GCA 90 bp CACAGTGTCACAAAAGGCACACAACACAGCATGTGTGGGTCAGTCTCGATGAGAATGACCCCTATCACCTaGAGCCCAGTCTTCTTACAG +
Preference number: 2 (lower is better)
Translates to: HSVTKGTQHSMCGSVSMRMTPIT*SPVFLQ
Trigger: CTGTAAGAAGACTGGGCTGCAGGTGATAGGGGTCAT...TCTCATCGAGACTGACCCACACATGCTGTGTTGTGTGCCTTTTGTGACACTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
3UTR-3UTR GCA 90 bp ACCAGATGTGCCGGTAAACCACAGTGTCACAAAAGGCACACAACACAGCATGTGATGACCCCTATCACCTaGAGCCCAGTCTTCTTACAG +
Preference number: 2 (lower is better)
Translates to: TRCAGKPQCHKRHTTQHVMTPIT*SPVFLQ
Trigger: CTGTAAGAAGACTGGGCTGCAGGTGATAGGGGTCAT...CACATGCTGTGTTGTGTGCCTTTTGTGACACTGTGGTTTACCGGCACATCTGGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
3UTR-3UTR GCA 90 bp AGGACAAAGGGCTTGGATGCTGGGTCCTTCCTAAGACGGGGCGGTATGTTTAATCGTGAGTGCGGAATATaGAGTGCTTTTGGGAAATTC +
Preference number: 2 (lower is better)
Translates to: RTKGLDAGSFLRRGGMFNRECGI*SAFGKF
Trigger: GAATTTCCCAAAAGCACTGCATATTCCGCACTCACG...ATTAAACATACCGCCCCGTCTTAGGAAGGACCCAGCATCCAAGCCCTTTGTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000234968.2
3UTR-3UTR GCA 90 bp TCCAAGCTCCTGGTAAGTTGGGAATCCAGGGGGACAGAGCCTAAAAAGGGAACTCGTGAGTGCGGAATATaGAGTGCTTTTGGGAAATTC +
Preference number: 2 (lower is better)
Translates to: SKLLVSWESRGTEPKKGTRECGI*SAFGKF
Trigger: GAATTTCCCAAAAGCACTGCATATTCCGCACTCACG...AGTTCCCTTTTTAGGCTCTGTCCCCCTGGATTCCCAACTTACCAGGAGCTTGGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000235055.2
3UTR-3UTR GCA 90 bp GTCTTCTTACAGAAGGTCAGCTCCCGCCTCACATCCCCAATAGACACCGCCTGTAAACTGCTTTATCAGTaGATGTTTCTTGGGACCTCT +
Preference number: 2 (lower is better)
Translates to: VFLQKVSSRLTSPIDTACKLLYQ*MFLGTS
Trigger: AGAGGTCCCAAGAAACATGCACTGATAAAGCAGTTT...ACAGGCGGTGTCTATTGGGGATGTGAGGCGGGAGCTGACCTTCTGTAAGAAGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234579.2
ENSMUST00000235055.2
3UTR-3UTR GCA 90 bp ATAGCAGAGTTCTGTAAAGTTACCAGATGTGCCGGTAAACCACAGTGTCACAAAAAGGTCCTACAGGCATaGAGCACCAGAAGGCTGCCA +
Preference number: 2 (lower is better)
Translates to: IAEFCKVTRCAGKPQCHKKVLQA*STRRLP
Trigger: TGGCAGCCTTCTGGTGCTGCATGCCTGTAGGACCTT...TTTGTGACACTGTGGTTTACCGGCACATCTGGTAACTTTACAGAACTCTGCTAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 11 transcripts:
ENSMUST00000044252.7
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234674.2
ENSMUST00000234928.2
ENSMUST00000234968.2
3UTR-3UTR GCA 90 bp GTAAACCACAGTGTCACAAAAGGCACACAACACAGCATGTGTGGGTCAGTCTCGCGTGAGTGCGGAATATaGAGTGCTTTTGGGAAATTC +
Preference number: 2 (lower is better)
Translates to: VNHSVTKGTQHSMCGSVSRECGI*SAFGKF
Trigger: GAATTTCCCAAAAGCACTGCATATTCCGCACTCACG...CGAGACTGACCCACACATGCTGTGTTGTGTGCCTTTTGTGACACTGTGGTTTAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000234968.2
3UTR-3UTR TCA 90 bp ATAGCAGAGTTCTGTAAAGTTACCAGATGTGCCGGTAAACCACAGTGTCACAAATGGGAAATTCCTGGATaGAGTCACGCCCTTCCTCCA +
Preference number: 2 (lower is better)
Translates to: IAEFCKVTRCAGKPQCHKWEIPG*SHALPP
Trigger: TGGAGGAAGGGCGTGACTTCATCCAGGAATTTCCCA...TTTGTGACACTGTGGTTTACCGGCACATCTGGTAACTTTACAGAACTCTGCTAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000234968.2
3UTR-3UTR GCA 90 bp CTAATACTGCTTGTTCCAGACATGAAATGTAGGGGAATCAAGAGTCACCTCGCTATGACCCCTATCACCTaGAGCCCAGTCTTCTTACAG +
Preference number: 2 (lower is better)
Translates to: LILLVPDMKCRGIKSHLAMTPIT*SPVFLQ
Trigger: CTGTAAGAAGACTGGGCTGCAGGTGATAGGGGTCAT...AGCGAGGTGACTCTTGATTCCCCTACATTTCATGTCTGGAACAAGCAGTATTAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
3UTR-3UTR GCA 90 bp GGCTGGACGAAAGCCTATAGGCTAAAGGTTAAGGCTGCTATTATCTCAAGGAATATGACCCCTATCACCTaGAGCCCAGTCTTCTTACAG +
Preference number: 2 (lower is better)
Translates to: GWTKAYRLKVKAAIISRNMTPIT*SPVFLQ
Trigger: CTGTAAGAAGACTGGGCTGCAGGTGATAGGGGTCAT...ATTCCTTGAGATAATAGCAGCCTTAACCTTTAGCCTATAGGCTTTCGTCCAGCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
3UTR-3UTR GCA 90 bp TTACTAATACTGCTTGTTCCAGACATGAAATGTAGGGGAATCAAGAGTCACCTCTGGAGAAGACATTGGTaGACTCAGCGCAGTGTGGGC +
Preference number: 2 (lower is better)
Translates to: LLILLVPDMKCRGIKSHLWRRHW*TQRSVG
Trigger: GCCCACACTGCGCTGAGTGCACCAATGTCTTCTCCA...GAGGTGACTCTTGATTCCCCTACATTTCATGTCTGGAACAAGCAGTATTAGTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
3UTR-3UTR GCA 90 bp TGGACGAAAGCCTATAGGCTAAAGGTTAAGGCTGCTATTATCTCAAGGAATCAGGTGCGGAATATGCAGTaGTTTTGGGAAATTCCTGGA +
Preference number: 2 (lower is better)
Translates to: WTKAYRLKVKAAIISRNQVRNMQ*FWEIPG
Trigger: TCCAGGAATTTCCCAAAAGCACTGCATATTCCGCAC...CTGATTCCTTGAGATAATAGCAGCCTTAACCTTTAGCCTATAGGCTTTCGTCCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000234968.2
3UTR-3UTR TCA 90 bp ATAGCAGAGTTCTGTAAAGTTACCAGATGTGCCGGTAAACCACAGTGTCACAAATGCTTGTTCCAGACATaGAATGTAGGGGAATCAAGA +
Preference number: 2 (lower is better)
Translates to: IAEFCKVTRCAGKPQCHKCLFQT*NVGESR
Trigger: TCTTGATTCCCCTACATTTCATGTCTGGAACAAGCA...TTTGTGACACTGTGGTTTACCGGCACATCTGGTAACTTTACAGAACTCTGCTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 11 transcripts:
ENSMUST00000044252.7
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234674.2
ENSMUST00000234928.2
ENSMUST00000234968.2
3UTR-3UTR GCA 90 bp TTACTAATACTGCTTGTTCCAGACATGAAATGTAGGGGAATCAAGAGTCACCTCGTGCGGAATATGCAGTaGTTTTGGGAAATTCCTGGA +
Preference number: 2 (lower is better)
Translates to: LLILLVPDMKCRGIKSHLVRNMQ*FWEIPG
Trigger: TCCAGGAATTTCCCAAAAGCACTGCATATTCCGCAC...GAGGTGACTCTTGATTCCCCTACATTTCATGTCTGGAACAAGCAGTATTAGTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000234968.2
3UTR GCA 72 bp AGGGAACTCCAGCCAGCCGGGCCAGCTCCTCCCCACTaGCGCTGGAGAAGACATTGGTGCACTCAGCGCAGT +
Preference number: 3 (lower is better)
Translates to: RELQPAGPAPPH*RWRRHWCTQRS
Trigger: ACTGCGCTGAGTGCACCAATGTCTTCTCCAGCGGCAGTGGGGAGGAGCTGGCCCGGCTGGCTGGAGTTCCCT
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000235055.2
3UTR-3UTR CAA 90 bp CACTGGCCAGCTCCTGTGTGGTGTGGCTATGAGAGCAGCCTGTTGACCTGGGGCCCGCTGGAGAAGACATaGGTGCACTCAGCGCAGTGT +
Preference number: 3 (lower is better)
Translates to: HWPAPVWCGYESSLLTWGPLEKT*VHSAQC
Trigger: ACACTGCGCTGAGTGCACCAATGTCTTCTCCAGCGG...GCCCCAGGTCAACAGGCTGCTCTCATAGCCACACCACACAGGAGCTGGCCAGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
3UTR-3UTR CAA 90 bp CCCAATAGACACCGCCTGTGGTGTGGTGACTACAAGAGCCCCAAGGGGCCTGTACACTGGTGCACGGCCTaGCCTTGTGCACGGAGCATG +
Preference number: 3 (lower is better)
Translates to: PNRHRLWCGDYKSPKGPVHWCTA*PCARSM
Trigger: CATGCTCCGTGCACAAGGCAAGGCCGTGCACCAGTG...TACAGGCCCCTTGGGGCTCTTGTAGTCACCACACCACAGGCGGTGTCTATTGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234579.2
ENSMUST00000235055.2
3UTR GCA 72 bp CCAGCCATTGTCACACTGGTGCACGGCCTTGCCTTGTaGACGGAGCATGTGTGGTATGCTGGGACCGCACAG +
Preference number: 3 (lower is better)
Translates to: PAIVTLVHGLAL*TEHVWYAGTAQ
Trigger: CTGTGCGGTCCCAGCATACCACACATGCTCCGTGCACAAGGCAAGGCCGTGCACCAGTGTGACAATGGCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234579.2
ENSMUST00000235055.2
3UTR GCA 72 bp CAGGCACCCAGCCATTGTCACACTGGTGCACGGCCTTaGCTTGTGCACGGAGCATGTGTGGTATGCTGGGAC +
Preference number: 3 (lower is better)
Translates to: QAPSHCHTGARP*LVHGACVVCWD
Trigger: GTCCCAGCATACCACACATGCTCCGTGCACAAGGCAAGGCCGTGCACCAGTGTGACAATGGCTGGGTGCCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234579.2
ENSMUST00000235055.2
3UTR-3UTR CAA 90 bp ACCCCTATCACCTGCAGCCCAGTCTTCTTACAGAAGGTCAGCTCCCGCCTCACAGTGCACGGCCTTGCCTaGTGCACGGAGCATGTGTGG +
Preference number: 3 (lower is better)
Translates to: TPITCSPVFLQKVSSRLTVHGLA*CTEHVW
Trigger: CCACACATGCTCCGTGCACAAGGCAAGGCCGTGCAC...TGTGAGGCGGGAGCTGACCTTCTGTAAGAAGACTGGGCTGCAGGTGATAGGGGT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234579.2
ENSMUST00000235055.2
3UTR-3UTR CAA 90 bp AGTCACCTCGCTGAGGACAAAGGGCTTGGATGCTGGGTCCTTCCTAAGACGGGGCAAGCTCCTGGTAAGTaGGGAATCCAGGGGGACAGA +
Preference number: 3 (lower is better)
Translates to: SHLAEDKGLGCWVLPKTGQAPGK*GIQGDR
Trigger: TCTGTCCCCCTGGATTCCCAACTTACCAGGAGCTTG...CCCCGTCTTAGGAAGGACCCAGCATCCAAGCCCTTTGTCCTCAGCGAGGTGACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000234968.2
3UTR TCA 72 bp CAGCTCCTGTGTGGTGTGGCTATGAGAGCAGCCTGTTaGCCTGGGGCAGAAGTGACTAGGGCTGGACGAAAG +
Preference number: 3 (lower is better)
Translates to: QLLCGVAMRAAC*PGAEVTRAGRK
Trigger: CTTTCGTCCAGCCCTAGTCACTTCTGCCCCAGGTCAACAGGCTGCTCTCATAGCCACACCACACAGGAGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 11 transcripts:
ENSMUST00000044252.7
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234674.2
ENSMUST00000234928.2
ENSMUST00000234968.2
3UTR GCA 72 bp TCCACAAAGACAGGCACCCAGCCATTGTCACACTGGTaGACGGCCTTGCCTTGTGCACGGAGCATGTGTGGT +
Preference number: 3 (lower is better)
Translates to: STKTGTQPLSHW*TALPCARSMCG
Trigger: ACCACACATGCTCCGTGCACAAGGCAAGGCCGTGCACCAGTGTGACAATGGCTGGGTGCCTGTCTTTGTGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234579.2
ENSMUST00000235055.2
3UTR CCA 72 bp CACAGCATGTGTGGGTCAGTCTCGATGAGAAAGCACTaGCCAGCTCCTGTGTGGTGTGGCTATGAGAGCAGC +
Preference number: 3 (lower is better)
Translates to: HSMCGSVSMRKH*PAPVWCGYESS
Trigger: GCTGCTCTCATAGCCACACCACACAGGAGCTGGCCAGTGCTTTCTCATCGAGACTGACCCACACATGCTGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 11 transcripts:
ENSMUST00000044252.7
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234674.2
ENSMUST00000234928.2
ENSMUST00000234968.2
3UTR CCA 72 bp GGCTTCCATAGTGGCCATGTGCTCATCAGAGGTCCCTaGAGGTGTGTCCACAACCAGATAATCCAGCTGCCC +
Preference number: 3 (lower is better)
Translates to: GFHSGHVLIRGP*RCVHNQIIQLP
Trigger: GGGCAGCTGGATTATCTGGTTGTGGACACACCTCCAGGGACCTCTGATGAGCACATGGCCACTATGGAAGCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 6 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000235055.2
3UTR-3UTR CAA 90 bp ACTAGTTTGGTGAAGCTAGTGTCAGCCAAGGACATGGGGGCCTGCAGATCTCTGCCGCTGGAGAAGACATaGGTGCACTCAGCGCAGTGT +
Preference number: 3 (lower is better)
Translates to: TSLVKLVSAKDMGACRSLPLEKT*VHSAQC
Trigger: ACACTGCGCTGAGTGCACCAATGTCTTCTCCAGCGG...CAGAGATCTGCAGGCCCCCATGTCCTTGGCTGACACTAGCTTCACCAAACTAGT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 6 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
3UTR-3UTR CAA 90 bp CAGGCCACGTCAGACACAAACTGCTTTATCAGTGCATGTTTCTTGGGACCTCTCGTGCACGGCCTTGCCTaGTGCACGGAGCATGTGTGG +
Preference number: 3 (lower is better)
Translates to: QATSDTNCFISACFLGPLVHGLA*CTEHVW
Trigger: CCACACATGCTCCGTGCACAAGGCAAGGCCGTGCAC...GAGAGGTCCCAAGAAACATGCACTGATAAAGCAGTTTGTGTCTGACGTGGCCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234579.2
ENSMUST00000235055.2
3UTR-3UTR CAA 90 bp GAGAAGACATTGGTGCACTCAGCGCAGTGTGGGCAGGTGAAGCCGCTCATGTTCATCAGTGCATGTTTCTaGGGACCTCTCCACACCACG +
Preference number: 3 (lower is better)
Translates to: EKTLVHSAQCGQVKPLMFISACF*GPLHTT
Trigger: CGTGGTGTGGAGAGGTCCCAAGAAACATGCACTGAT...GAACATGAGCGGCTTCACCTGCCCACACTGCGCTGAGTGCACCAATGTCTTCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234579.2
ENSMUST00000235055.2
3UTR GCA 72 bp GTGAAGCCGCTCATGTTCTCTATGACCCCTATCACCTaGAGCCCAGTCTTCTTACAGAAGGTCAGCTCCCGC +
Preference number: 3 (lower is better)
Translates to: VKPLMFSMTPIT*SPVFLQKVSSR
Trigger: GCGGGAGCTGACCTTCTGTAAGAAGACTGGGCTGCAGGTGATAGGGGTCATAGAGAACATGAGCGGCTTCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000235055.2
3UTR-3UTR CAA 90 bp AGGACAAAGGGCTTGGATGCTGGGTCCTTCCTAAGACGGGGCGGTATGTTTAATCCGCTGGAGAAGACATaGGTGCACTCAGCGCAGTGT +
Preference number: 3 (lower is better)
Translates to: RTKGLDAGSFLRRGGMFNPLEKT*VHSAQC
Trigger: ACACTGCGCTGAGTGCACCAATGTCTTCTCCAGCGG...ATTAAACATACCGCCCCGTCTTAGGAAGGACCCAGCATCCAAGCCCTTTGTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
3UTR TCA 72 bp AGGAACCCCACAGACATAAGGGAGATGCTCTGCTCCTaGTCCACAAAGACAGGCACCCAGCCATTGTCACAC +
Preference number: 3 (lower is better)
Translates to: RNPTDIREMLCS*STKTGTQPLSH
Trigger: GTGTGACAATGGCTGGGTGCCTGTCTTTGTGGATCAGGAGCAGAGCATCTCCCTTATGTCTGTGGGGTTCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234579.2
ENSMUST00000235055.2
3UTR GCA 72 bp AACAACTACAGGTCCCAAAACAGTCCTGAGGGCCTCTaGTCCCAAAGGTCCTACAGGCATGCAGCACCAGAA +
Preference number: 3 (lower is better)
Translates to: NNYRSQNSPEGL*SQRSYRHAAPE
Trigger: TTCTGGTGCTGCATGCCTGTAGGACCTTTGGGAGCAGAGGCCCTCAGGACTGTTTTGGGACCTGTAGTTGTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 12 transcripts:
ENSMUST00000044252.7
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234583.2
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234674.2
ENSMUST00000234928.2
ENSMUST00000234968.2
3UTR CCA 72 bp CCACAGTGTCACAAAAGGCACACAACACAGCATGTGTaGGTCAGTCTCGATGAGAAAGCACTGGCCAGCTCC +
Preference number: 3 (lower is better)
Translates to: PQCHKRHTTQHV*VSLDEKALASS
Trigger: GGAGCTGGCCAGTGCTTTCTCATCGAGACTGACCCACACATGCTGTGTTGTGTGCCTTTTGTGACACTGTGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 11 transcripts:
ENSMUST00000044252.7
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234674.2
ENSMUST00000234928.2
ENSMUST00000234968.2
3UTR CCA 72 bp ATGAAGTCACGCCCTTCCTCCAAGCTCCTGGTAAGTTaGGAATCCAGGGGGACAGAGCCTGCAATGACAAAG +
Preference number: 3 (lower is better)
Translates to: MKSRPSSKLLVS*ESRGTEPAMTK
Trigger: CTTTGTCATTGCAGGCTCTGTCCCCCTGGATTCCCAACTTACCAGGAGCTTGGAGGAAGGGCGTGACTTCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000234968.2
3UTR CCA 72 bp ATGAAGTCACGCCCTTCCTCCAAGCTCCTGGTAAGTTaGGAATCCAGGGGGACAGAGCCTAAAAAGGGAACT +
Preference number: 3 (lower is better)
Translates to: MKSRPSSKLLVS*ESRGTEPKKGT
Trigger: AGTTCCCTTTTTAGGCTCTGTCCCCCTGGATTCCCAACTTACCAGGAGCTTGGAGGAAGGGCGTGACTTCAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000235055.2
3UTR-3UTR CAA 90 bp GTAGGGGAATCAAGAGTCACCTCGCTGAGGACAAAGGGCTTGGATGCTGGGTCCGAATATGCAGTGCTTTaGGGAAATTCCTGGATGAAG +
Preference number: 3 (lower is better)
Translates to: VGESRVTSLRTKGLDAGSEYAVL*GNSWMK
Trigger: CTTCATCCAGGAATTTCCCAAAAGCACTGCATATTC...GGACCCAGCATCCAAGCCCTTTGTCCTCAGCGAGGTGACTCTTGATTCCCCTAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000234968.2
3UTR CCA 72 bp GTGAGTGCGGAATATGCAGTGCTTTTGGGAAATTCCTaGATGAAGTCACGCCCTTCCTCCAAGCTCCTGGTA +
Preference number: 3 (lower is better)
Translates to: VSAEYAVLLGNS*MKSRPSSKLLV
Trigger: TACCAGGAGCTTGGAGGAAGGGCGTGACTTCATCCAGGAATTTCCCAAAAGCACTGCATATTCCGCACTCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000234968.2
ENSMUST00000235055.2
3UTR GCA 72 bp CACAACTCTCTGGGCTATGGACGTGAGTGCGGAATATaGAGTGCTTTTGGGAAATTCCTGGATGAAGTCACG +
Preference number: 3 (lower is better)
Translates to: HNSLGYGRECGI*SAFGKFLDEVT
Trigger: CGTGACTTCATCCAGGAATTTCCCAAAAGCACTGCATATTCCGCACTCACGTCCATAGCCCAGAGAGTTGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 8 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000234968.2
ENSMUST00000235055.2
3UTR-3UTR CAA 90 bp TTCTGTAAAGTTACCAGATGTGCCGGTAAACCACAGTGTCACAAAAGGCACACACAAGCTCCTGGTAAGTaGGGAATCCAGGGGGACAGA +
Preference number: 3 (lower is better)
Translates to: FCKVTRCAGKPQCHKRHTQAPGK*GIQGDR
Trigger: TCTGTCCCCCTGGATTCCCAACTTACCAGGAGCTTG...TGTGTGCCTTTTGTGACACTGTGGTTTACCGGCACATCTGGTAACTTTACAGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000234968.2
3UTR-3UTR CAA 90 bp GGCTGGACGAAAGCCTATAGGCTAAAGGTTAAGGCTGCTATTATCTCAAGGAATGAATATGCAGTGCTTTaGGGAAATTCCTGGATGAAG +
Preference number: 3 (lower is better)
Translates to: GWTKAYRLKVKAAIISRNEYAVL*GNSWMK
Trigger: CTTCATCCAGGAATTTCCCAAAAGCACTGCATATTC...ATTCCTTGAGATAATAGCAGCCTTAACCTTTAGCCTATAGGCTTTCGTCCAGCC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234674.2
ENSMUST00000234968.2
CDS-3UTR CCA 90 bp CAGGCATGCAGCACCAGAAGGCTGCCAGGCGGTCAGGAGCACAGGGCAGACATCCCCACCTTCTTGCCCTaGTGGCGCAGAGCCAGGGCC +
Preference number: 4 (lower is better)
Translates to: QACSTRRLPGGQEHRADIPTFLP*WRRARA
Trigger: GGCCCTGGCTCTGCGCCACCAGGGCAAGAAGGTGGG...GATGTCTGCCCTGTGCTCCTGACCGCCTGGCAGCCTTCTGGTGCTGCATGCCTG
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234968.2
CDS-3UTR CCA 90 bp ACAGGCATGCAGCACCAGAAGGCTGCCAGGCGGTCAGGAGCACAGGGCAGACATCCCACCTTCTTGCCCTaGTGGCGCAGAGCCAGGGCC +
Preference number: 4 (lower is better)
Translates to: TGMQHQKAARRSGAQGRHPTFLP*WRRARA
Trigger: GGCCCTGGCTCTGCGCCACCAGGGCAAGAAGGTGGG...ATGTCTGCCCTGTGCTCCTGACCGCCTGGCAGCCTTCTGGTGCTGCATGCCTGT
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234968.2
CDS-3UTR GCA 90 bp GGTCCTACAGGCATGCAGCACCAGAAGGCTGCCAGGCGGTCAGGAGCACAGGGCGGATTCCCACCTTCTTaGCCTGGTGGCGCAGAGCCA +
Preference number: 4 (lower is better)
Translates to: GPTGMQHQKAARRSGAQGGFPPS*PGGAEP
Trigger: TGGCTCTGCGCCACCAGGGCAAGAAGGTGGGAATCC...GCCCTGTGCTCCTGACCGCCTGGCAGCCTTCTGGTGCTGCATGCCTGTAGGACC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234968.2
CDS-3UTR CCA 90 bp CAGGCATGCAGCACCAGAAGGCTGCCAGGCGGTCAGGAGCACAGGGCAGACATCTGCTTCTTGCCCTGGTaGCGCAGAGCCAGGGCCAAC +
Preference number: 4 (lower is better)
Translates to: QACSTRRLPGGQEHRADICFLPW*RRARAN
Trigger: GTTGGCCCTGGCTCTGCGCCACCAGGGCAAGAAGCA...GATGTCTGCCCTGTGCTCCTGACCGCCTGGCAGCCTTCTGGTGCTGCATGCCTG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000235055.2
CDS-3UTR TCA 90 bp CAGAGCCTAAAAAGGGAACTCCAGCCAGCCGGGCCAGCTCCTCCCCACTGCCGCGTTCCCGGGTTCTGGTaGGAAACAGGAGTTGGGGTG +
Preference number: 4 (lower is better)
Translates to: QSLKRELQPAGPAPPHCRVPGFW*ETGVGV
Trigger: CACCCCAACTCCTGTTTCTCACCAGAACCCGGGAAC...GCGGCAGTGGGGAGGAGCTGGCCCGGCTGGCTGGAGTTCCCTTTTTAGGCTCTG
63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000234261.2
ENSMUST00000234579.2
CDS-3UTR CCA 90 bp ACAGGCATGCAGCACCAGAAGGCTGCCAGGCGGTCAGGAGCACAGGGCAGACATTGCTTCTTGCCCTGGTaGCGCAGAGCCAGGGCCAAC +
Preference number: 4 (lower is better)
Translates to: TGMQHQKAARRSGAQGRHCFLPW*RRARAN
Trigger: GTTGGCCCTGGCTCTGCGCCACCAGGGCAAGAAGCA...ATGTCTGCCCTGTGCTCCTGACCGCCTGGCAGCCTTCTGGTGCTGCATGCCTGT
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000235055.2
CDS-3UTR GCA 90 bp AAGGTCCTACAGGCATGCAGCACCAGAAGGCTGCCAGGCGGTCAGGAGCACAGGGGATTCCCACCTTCTTaGCCTGGTGGCGCAGAGCCA +
Preference number: 4 (lower is better)
Translates to: KVLQACSTRRLPGGQEHRGFPPS*PGGAEP
Trigger: TGGCTCTGCGCCACCAGGGCAAGAAGGTGGGAATCC...CCTGTGCTCCTGACCGCCTGGCAGCCTTCTGGTGCTGCATGCCTGTAGGACCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234968.2
CDS-3UTR GCA 90 bp TACAGGCATGCAGCACCAGAAGGCTGCCAGGCGGTCAGGAGCACAGGGCAGACAGGATTCCCACCTTCTTaGCCTGGTGGCGCAGAGCCA +
Preference number: 4 (lower is better)
Translates to: YRHAAPEGCQAVRSTGQTGFPPS*PGGAEP
Trigger: TGGCTCTGCGCCACCAGGGCAAGAAGGTGGGAATCC...TGTCTGCCCTGTGCTCCTGACCGCCTGGCAGCCTTCTGGTGCTGCATGCCTGTA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234968.2
CDS-3UTR GCA 90 bp CACTGGCCAGCTCCTGTGTGGTGTGGCTATGAGAGCAGCCTGTTGACCTGGGGCCCAGCTCCTCCCCACTaGCGCTGGAGAAGACATTGG +
Preference number: 4 (lower is better)
Translates to: HWPAPVWCGYESSLLTWGPAPPH*RWRRHW
Trigger: CCAATGTCTTCTCCAGCGGCAGTGGGGAGGAGCTGG...GCCCCAGGTCAACAGGCTGCTCTCATAGCCACACCACACAGGAGCTGGCCAGTG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR GCA 90 bp AAGGTCCTACAGGCATGCAGCACCAGAAGGCTGCCAGGCGGTCAGGAGCACAGGCCAGCTCCTCCCCACTaGCGCTGGAGAAGACATTGG +
Preference number: 4 (lower is better)
Translates to: KVLQACSTRRLPGGQEHRPAPPH*RWRRHW
Trigger: CCAATGTCTTCTCCAGCGGCAGTGGGGAGGAGCTGG...CCTGTGCTCCTGACCGCCTGGCAGCCTTCTGGTGCTGCATGCCTGTAGGACCTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234968.2
CDS-3UTR CCA 90 bp GTAGGGGAATCAAGAGTCACCTCGCTGAGGACAAAGGGCTTGGATGCTGGGTCCCCCACCTTCTTGCCCTaGTGGCGCAGAGCCAGGGCC +
Preference number: 4 (lower is better)
Translates to: VGESRVTSLRTKGLDAGSPTFLP*WRRARA
Trigger: GGCCCTGGCTCTGCGCCACCAGGGCAAGAAGGTGGG...GGACCCAGCATCCAAGCCCTTTGTCCTCAGCGAGGTGACTCTTGATTCCCCTAC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234968.2
CDS-3UTR CCA 90 bp ACAGAGCCTAAAAAGGGAACTCCAGCCAGCCGGGCCAGCTCCTCCCCACTGCCGCCAGGGCCAACTCCGTaGAGATGGTGCTTTTCCCAA +
Preference number: 4 (lower is better)
Translates to: TEPKKGTPASRASSSPLPPGPTP*RWCFSQ
Trigger: TTGGGAAAAGCACCATCTCCACGGAGTTGGCCCTGG...CGGCAGTGGGGAGGAGCTGGCCCGGCTGGCTGGAGTTCCCTTTTTAGGCTCTGT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 6 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000235055.2
CDS-3UTR CCA 90 bp CAGGCATGCAGCACCAGAAGGCTGCCAGGCGGTCAGGAGCACAGGGCAGACATCCCAGGGCCAACTCCGTaGAGATGGTGCTTTTCCCAA +
Preference number: 4 (lower is better)
Translates to: QACSTRRLPGGQEHRADIPGPTP*RWCFSQ
Trigger: TTGGGAAAAGCACCATCTCCACGGAGTTGGCCCTGG...GATGTCTGCCCTGTGCTCCTGACCGCCTGGCAGCCTTCTGGTGCTGCATGCCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234968.2
ENSMUST00000235055.2
CDS-3UTR CCA 90 bp TCCTACAGGCATGCAGCACCAGAAGGCTGCCAGGCGGTCAGGAGCACAGGGCAGCTCATCAGAGGTCCCTaGAGGTGTGTCCACAACCAG +
Preference number: 4 (lower is better)
Translates to: SYRHAAPEGCQAVRSTGQLIRGP*RCVHNQ
Trigger: CTGGTTGTGGACACACCTCCAGGGACCTCTGATGAG...CTGCCCTGTGCTCCTGACCGCCTGGCAGCCTTCTGGTGCTGCATGCCTGTAGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234598.2
ENSMUST00000234968.2
CDS-3UTR CCA 90 bp TCCTACAGGCATGCAGCACCAGAAGGCTGCCAGGCGGTCAGGAGCACAGGGCAGCGCTGGAGAAGACATTaGTGCACTCAGCGCAGTGTG +
Preference number: 4 (lower is better)
Translates to: SYRHAAPEGCQAVRSTGQRWRRH*CTQRSV
Trigger: CACACTGCGCTGAGTGCACCAATGTCTTCTCCAGCG...CTGCCCTGTGCTCCTGACCGCCTGGCAGCCTTCTGGTGCTGCATGCCTGTAGGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234968.2
CDS-3UTR TCA 90 bp CAGCACCAGAAGGCTGCCAGGCGGTCAGGAGCACAGGGCAGACATCCTGTGCACTGGGAAATTCCTGGATaGAGTCACGCCCTTCCTCCA +
Preference number: 4 (lower is better)
Translates to: QHQKAARRSGAQGRHPVHWEIPG*SHALPP
Trigger: TGGAGGAAGGGCGTGACTTCATCCAGGAATTTCCCA...GTGCACAGGATGTCTGCCCTGTGCTCCTGACCGCCTGGCAGCCTTCTGGTGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234598.2
CDS-3UTR CCA 90 bp CACTGGCCAGCTCCTGTGTGGTGTGGCTATGAGAGCAGCCTGTTGACCTGGGGCCCAACTCCGTGGAGATaGTGCTTTTCCCAACGCCAC +
Preference number: 4 (lower is better)
Translates to: HWPAPVWCGYESSLLTWGPTPWR*CFSQRH
Trigger: GTGGCGTTGGGAAAAGCACCATCTCCACGGAGTTGG...GCCCCAGGTCAACAGGCTGCTCTCATAGCCACACCACACAGGAGCTGGCCAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000044252.7
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234968.2
CDS-3UTR CCA 90 bp CACTGGCCAGCTCCTGTGTGGTGTGGCTATGAGAGCAGCCTGTTGACCTGGGGCCCAGGGCCAACTCCGTaGAGATGGTGCTTTTCCCAA +
Preference number: 4 (lower is better)
Translates to: HWPAPVWCGYESSLLTWGPGPTP*RWCFSQ
Trigger: TTGGGAAAAGCACCATCTCCACGGAGTTGGCCCTGG...GCCCCAGGTCAACAGGCTGCTCTCATAGCCACACCACACAGGAGCTGGCCAGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000044252.7
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234968.2
CDS-3UTR CCA 90 bp CCCAGTCTTCTTACAGAAGGTCAGCTCCCGCCTCACATCCCCAATAGACACCGCTGCTTCTTGCCCTGGTaGCGCAGAGCCAGGGCCAAC +
Preference number: 4 (lower is better)
Translates to: PSLLTEGQLPPHIPNRHRCFLPW*RRARAN
Trigger: GTTGGCCCTGGCTCTGCGCCACCAGGGCAAGAAGCA...GCGGTGTCTATTGGGGATGTGAGGCGGGAGCTGACCTTCTGTAAGAAGACTGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000235055.2
3UTR CAA 72 bp ACAGGCACCCAGCCATTGTCACACTGGTGCACGGCCTaGCCTTGTGCACGGAGCATGTGTGGTATGCTGGGA +
Preference number: 4 (lower is better)
Translates to: TGTQPLSHWCTA*PCARSMCGMLG
Trigger: TCCCAGCATACCACACATGCTCCGTGCACAAGGCAAGGCCGTGCACCAGTGTGACAATGGCTGGGTGCCTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000234579.2
ENSMUST00000235055.2
CDS-3UTR GCA 90 bp AGAGTCACCTCGCTGAGGACAAAGGGCTTGGATGCTGGGTCCTTCCTAAGACGGGGATTCCCACCTTCTTaGCCTGGTGGCGCAGAGCCA +
Preference number: 4 (lower is better)
Translates to: RVTSLRTKGLDAGSFLRRGFPPS*PGGAEP
Trigger: TGGCTCTGCGCCACCAGGGCAAGAAGGTGGGAATCC...CCGTCTTAGGAAGGACCCAGCATCCAAGCCCTTTGTCCTCAGCGAGGTGACTCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234968.2
CDS-3UTR GCA 90 bp AGGTCCTACAGGCATGCAGCACCAGAAGGCTGCCAGGCGGTCAGGAGCACAGGGATGACCCCTATCACCTaGAGCCCAGTCTTCTTACAG +
Preference number: 4 (lower is better)
Translates to: RSYRHAAPEGCQAVRSTGMTPIT*SPVFLQ
Trigger: CTGTAAGAAGACTGGGCTGCAGGTGATAGGGGTCAT...CCCTGTGCTCCTGACCGCCTGGCAGCCTTCTGGTGCTGCATGCCTGTAGGACCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234598.2
ENSMUST00000234968.2
CDS-3UTR GCA 90 bp GAAGTCACGCCCTTCCTCCAAGCTCCTGGTAAGTTGGGAATCCAGGGGGACAGACTGCAAGGAGGAGGATaGTTCTTGCCCTGGTGGCGC +
Preference number: 4 (lower is better)
Translates to: EVTPFLQAPGKLGIQGDRLQGGG*FLPWWR
Trigger: GCGCCACCAGGGCAAGAAGCATCCTCCTCCTTGCAG...TCTGTCCCCCTGGATTCCCAACTTACCAGGAGCTTGGAGGAAGGGCGTGACTTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000235055.2
CDS-3UTR CCA 90 bp GATGTGCCGGTAAACCACAGTGTCACAAAAGGCACACAACACAGCATGTGTGGGCCCACCTTCTTGCCCTaGTGGCGCAGAGCCAGGGCC +
Preference number: 4 (lower is better)
Translates to: DVPVNHSVTKGTQHSMCGPTFLP*WRRARA
Trigger: GGCCCTGGCTCTGCGCCACCAGGGCAAGAAGGTGGG...CCCACACATGCTGTGTTGTGTGCCTTTTGTGACACTGTGGTTTACCGGCACATC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234968.2
CDS-3UTR CCA 90 bp TGGCCAGCTCCTGTGTGGTGTGGCTATGAGAGCAGCCTGTTGACCTGGGGCAGACTCATCAGAGGTCCCTaGAGGTGTGTCCACAACCAG +
Preference number: 4 (lower is better)
Translates to: WPAPVWCGYESSLLTWGRLIRGP*RCVHNQ
Trigger: CTGGTTGTGGACACACCTCCAGGGACCTCTGATGAG...TCTGCCCCAGGTCAACAGGCTGCTCTCATAGCCACACCACACAGGAGCTGGCCA
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR CCA 90 bp AGAGTCACCTCGCTGAGGACAAAGGGCTTGGATGCTGGGTCCTTCCTAAGACGGGCACTCAGCGCAGTGTaGGCAGGTGAAGCCGCTCAT +
Preference number: 4 (lower is better)
Translates to: RVTSLRTKGLDAGSFLRRALSAV*AGEAAH
Trigger: ATGAGCGGCTTCACCTGCCCACACTGCGCTGAGTGC...CCGTCTTAGGAAGGACCCAGCATCCAAGCCCTTTGTCCTCAGCGAGGTGACTCT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR GCA 90 bp TCACGCCCTTCCTCCAAGCTCCTGGTAAGTTGGGAATCCAGGGGGACAGAGCCTACTCCGTGGAGATGGTaGTTTTCCCAACGCCACCCT +
Preference number: 4 (lower is better)
Translates to: SRPSSKLLVSWESRGTEPTPWRW*FSQRHP
Trigger: AGGGTGGCGTTGGGAAAAGCACCATCTCCACGGAGT...AGGCTCTGTCCCCCTGGATTCCCAACTTACCAGGAGCTTGGAGGAAGGGCGTGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234968.2
ENSMUST00000235055.2
CDS-3UTR GCA 90 bp TCGCTGAGGACAAAGGGCTTGGATGCTGGGTCCTTCCTAAGACGGGGCGGTATGACTCCGTGGAGATGGTaGTTTTCCCAACGCCACCCT +
Preference number: 4 (lower is better)
Translates to: SLRTKGLDAGSFLRRGGMTPWRW*FSQRHP
Trigger: AGGGTGGCGTTGGGAAAAGCACCATCTCCACGGAGT...CATACCGCCCCGTCTTAGGAAGGACCCAGCATCCAAGCCCTTTGTCCTCAGCGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000044252.7
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234968.2
CDS-3UTR GCA 90 bp AGTCACCTCGCTGAGGACAAAGGGCTTGGATGCTGGGTCCTTCCTAAGACGGGGTGGAGAAGACATTGGTaGACTCAGCGCAGTGTGGGC +
Preference number: 4 (lower is better)
Translates to: SHLAEDKGLGCWVLPKTGWRRHW*TQRSVG
Trigger: GCCCACACTGCGCTGAGTGCACCAATGTCTTCTCCA...CCCCGTCTTAGGAAGGACCCAGCATCCAAGCCCTTTGTCCTCAGCGAGGTGACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR CCA 90 bp ACCTCGCTGAGGACAAAGGGCTTGGATGCTGGGTCCTTCCTAAGACGGGGCGGTTCAGTGCATGTTTCTTaGGACCTCTCCACACCACGG +
Preference number: 4 (lower is better)
Translates to: TSLRTKGLDAGSFLRRGGSVHVS*DLSTPR
Trigger: CCGTGGTGTGGAGAGGTCCCAAGAAACATGCACTGA...ACCGCCCCGTCTTAGGAAGGACCCAGCATCCAAGCCCTTTGTCCTCAGCGAGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR CCA 90 bp GCTCCTGTGTGGTGTGGCTATGAGAGCAGCCTGTTGACCTGGGGCAGAAGTGACCTCATCAGAGGTCCCTaGAGGTGTGTCCACAACCAG +
Preference number: 4 (lower is better)
Translates to: APVWCGYESSLLTWGRSDLIRGP*RCVHNQ
Trigger: CTGGTTGTGGACACACCTCCAGGGACCTCTGATGAG...GTCACTTCTGCCCCAGGTCAACAGGCTGCTCTCATAGCCACACCACACAGGAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR CCA 90 bp GCCAAGGACATGGGGGCCTGCAGATCTCTGCATGGATGTAATCGCATAGTCCAGGCACTCAGCGCAGTGTaGGCAGGTGAAGCCGCTCAT +
Preference number: 4 (lower is better)
Translates to: AKDMGACRSLHGCNRIVQALSAV*AGEAAH
Trigger: ATGAGCGGCTTCACCTGCCCACACTGCGCTGAGTGC...CTGGACTATGCGATTACATCCATGCAGAGATCTGCAGGCCCCCATGTCCTTGGC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR TCA 90 bp GTCTTCTTACAGAAGGTCAGCTCCCGCCTCACATCCCCAATAGACACCGCCTGTGTTCCCGGGTTCTGGTaGGAAACAGGAGTTGGGGTG +
Preference number: 4 (lower is better)
Translates to: VFLQKVSSRLTSPIDTACVPGFW*ETGVGV
Trigger: CACCCCAACTCCTGTTTCTCACCAGAACCCGGGAAC...ACAGGCGGTGTCTATTGGGGATGTGAGGCGGGAGCTGACCTTCTGTAAGAAGAC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234261.2
ENSMUST00000234579.2
CDS-3UTR GCA 90 bp GCTGAGGACAAAGGGCTTGGATGCTGGGTCCTTCCTAAGACGGGGCGGTATGTTTGGAGAAGACATTGGTaGACTCAGCGCAGTGTGGGC +
Preference number: 4 (lower is better)
Translates to: AEDKGLGCWVLPKTGRYVWRRHW*TQRSVG
Trigger: GCCCACACTGCGCTGAGTGCACCAATGTCTTCTCCA...AACATACCGCCCCGTCTTAGGAAGGACCCAGCATCCAAGCCCTTTGTCCTCAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR GCA 90 bp CCCAATAGACACCGCCTGTGGTGTGGTGACTACAAGAGCCCCAAGGGGCCTGTATTTATCAGTGCTTCTTaGCCTGGTGGCGCAGAGCCA +
Preference number: 4 (lower is better)
Translates to: PNRHRLWCGDYKSPKGPVFISAS*PGGAEP
Trigger: TGGCTCTGCGCCACCAGGGCAAGAAGCACTGATAAA...TACAGGCCCCTTGGGGCTCTTGTAGTCACCACACCACAGGCGGTGTCTATTGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234261.2
CDS-3UTR CCA 90 bp AGAGTCACCTCGCTGAGGACAAAGGGCTTGGATGCTGGGTCCTTCCTAAGACGGCCAACTCCGTGGAGATaGTGCTTTTCCCAACGCCAC +
Preference number: 4 (lower is better)
Translates to: RVTSLRTKGLDAGSFLRRPTPWR*CFSQRH
Trigger: GTGGCGTTGGGAAAAGCACCATCTCCACGGAGTTGG...CCGTCTTAGGAAGGACCCAGCATCCAAGCCCTTTGTCCTCAGCGAGGTGACTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000044252.7
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234968.2
CDS-3UTR CCA 90 bp GAGAAGACATTGGTGCACTCAGCGCAGTGTGGGCAGGTGAAGCCGCTCATGTTCCCAACTCCGTGGAGATaGTGCTTTTCCCAACGCCAC +
Preference number: 4 (lower is better)
Translates to: EKTLVHSAQCGQVKPLMFPTPWR*CFSQRH
Trigger: GTGGCGTTGGGAAAAGCACCATCTCCACGGAGTTGG...GAACATGAGCGGCTTCACCTGCCCACACTGCGCTGAGTGCACCAATGTCTTCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 6 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000235055.2
CDS-3UTR TCA 90 bp GGAATCAAGAGTCACCTCGCTGAGGACAAAGGGCTTGGATGCTGGGTCCTTCCTCGCTCATGTTCTCTATaGCCCCTATCACCTGCAGCC +
Preference number: 4 (lower is better)
Translates to: GIKSHLAEDKGLGCWVLPRSCSL*PLSPAA
Trigger: GGCTGCAGGTGATAGGGGTCATAGAGAACATGAGCG...AGGAAGGACCCAGCATCCAAGCCCTTTGTCCTCAGCGAGGTGACTCTTGATTCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR TCA 90 bp ATGAGAAAGCACTGGCCAGCTCCTGTGTGGTGTGGCTATGAGAGCAGCCTGTTGCGCTCATGTTCTCTATaGCCCCTATCACCTGCAGCC +
Preference number: 4 (lower is better)
Translates to: MRKHWPAPVWCGYESSLLRSCSL*PLSPAA
Trigger: GGCTGCAGGTGATAGGGGTCATAGAGAACATGAGCG...CAACAGGCTGCTCTCATAGCCACACCACACAGGAGCTGGCCAGTGCTTTCTCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR GCA 90 bp ATGAGAAAGCACTGGCCAGCTCCTGTGTGGTGTGGCTATGAGAGCAGCCTGTTGTGGAGAAGACATTGGTaGACTCAGCGCAGTGTGGGC +
Preference number: 4 (lower is better)
Translates to: MRKHWPAPVWCGYESSLLWRRHW*TQRSVG
Trigger: GCCCACACTGCGCTGAGTGCACCAATGTCTTCTCCA...CAACAGGCTGCTCTCATAGCCACACCACACAGGAGCTGGCCAGTGCTTTCTCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR GCA 90 bp ATGCAGCACCAGAAGGCTGCCAGGCGGTCAGGAGCACAGGGCAGACATCCTGTGAAACTGCTTTATCAGTaGTGCAAAGACCCCAAAGCC +
Preference number: 4 (lower is better)
Translates to: MQHQKAARRSGAQGRHPVKLLYQ*CKDPKA
Trigger: GGCTTTGGGGTCTTTGCAGCACTGATAAAGCAGTTT...CACAGGATGTCTGCCCTGTGCTCCTGACCGCCTGGCAGCCTTCTGGTGCTGCAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234489.2
CDS-3UTR CCA 90 bp GTCTCGATGAGAAAGCACTGGCCAGCTCCTGTGTGGTGTGGCTATGAGAGCAGCTCAGTGCATGTTTCTTaGGACCTCTCCACACCACGG +
Preference number: 4 (lower is better)
Translates to: VSMRKHWPAPVWCGYESSSVHVS*DLSTPR
Trigger: CCGTGGTGTGGAGAGGTCCCAAGAAACATGCACTGA...GCTGCTCTCATAGCCACACCACACAGGAGCTGGCCAGTGCTTTCTCATCGAGAC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR CCA 90 bp ACCAGAAGGCTGCCAGGCGGTCAGGAGCACAGGGCAGACATCCTGTGCACAACTCTTTTGGGAAATTCCTaGATGAAGTCACGCCCTTCC +
Preference number: 4 (lower is better)
Translates to: TRRLPGGQEHRADILCTTLLGNS*MKSRPS
Trigger: GGAAGGGCGTGACTTCATCCAGGAATTTCCCAAAAG...AGTTGTGCACAGGATGTCTGCCCTGTGCTCCTGACCGCCTGGCAGCCTTCTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234598.2
CDS-3UTR CCA 90 bp CATGTTCTCTATGACCCCTATCACCTGCAGCCCAGTCTTCTTACAGAAGGTCAGTGCTTCTTGCCCTGGTaGCGCAGAGCCAGGGCCAAC +
Preference number: 4 (lower is better)
Translates to: HVLYDPYHLQPSLLTEGQCFLPW*RRARAN
Trigger: GTTGGCCCTGGCTCTGCGCCACCAGGGCAAGAAGCA...CTGACCTTCTGTAAGAAGACTGGGCTGCAGGTGATAGGGGTCATAGAGAACATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000235055.2
CDS-3UTR TCA 90 bp AGTTTGGTGAAGCTAGTGTCAGCCAAGGACATGGGGGCCTGCAGATCTCTGCATGAGATGCTCTGCTCCTaGTCCACAAAGACAGGCACC +
Preference number: 4 (lower is better)
Translates to: SLVKLVSAKDMGACRSLHEMLCS*STKTGT
Trigger: GGTGCCTGTCTTTGTGGATCAGGAGCAGAGCATCTC...ATGCAGAGATCTGCAGGCCCCCATGTCCTTGGCTGACACTAGCTTCACCAAACT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 7 transcripts:
ENSMUST00000044252.7
ENSMUST00000234489.2
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234674.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR TCA 90 bp ATCAAGAGTCACCTCGCTGAGGACAAAGGGCTTGGATGCTGGGTCCTTCCTAAGCGCTCATGTTCTCTATaGCCCCTATCACCTGCAGCC +
Preference number: 4 (lower is better)
Translates to: IKSHLAEDKGLGCWVLPKRSCSL*PLSPAA
Trigger: GGCTGCAGGTGATAGGGGTCATAGAGAACATGAGCG...CTTAGGAAGGACCCAGCATCCAAGCCCTTTGTCCTCAGCGAGGTGACTCTTGAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR TCA 90 bp ACTAGTTTGGTGAAGCTAGTGTCAGCCAAGGACATGGGGGCCTGCAGATCTCTGCGCTCATGTTCTCTATaGCCCCTATCACCTGCAGCC +
Preference number: 4 (lower is better)
Translates to: TSLVKLVSAKDMGACRSLRSCSL*PLSPAA
Trigger: GGCTGCAGGTGATAGGGGTCATAGAGAACATGAGCG...CAGAGATCTGCAGGCCCCCATGTCCTTGGCTGACACTAGCTTCACCAAACTAGT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR GCA 90 bp AGAGTCACCTCGCTGAGGACAAAGGGCTTGGATGCTGGGTCCTTCCTAAGACGGATGACCCCTATCACCTaGAGCCCAGTCTTCTTACAG +
Preference number: 4 (lower is better)
Translates to: RVTSLRTKGLDAGSFLRRMTPIT*SPVFLQ
Trigger: CTGTAAGAAGACTGGGCTGCAGGTGATAGGGGTCAT...CCGTCTTAGGAAGGACCCAGCATCCAAGCCCTTTGTCCTCAGCGAGGTGACTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR GCA 90 bp GTCTCGATGAGAAAGCACTGGCCAGCTCCTGTGTGGTGTGGCTATGAGAGCAGCATGACCCCTATCACCTaGAGCCCAGTCTTCTTACAG +
Preference number: 4 (lower is better)
Translates to: VSMRKHWPAPVWCGYESSMTPIT*SPVFLQ
Trigger: CTGTAAGAAGACTGGGCTGCAGGTGATAGGGGTCAT...GCTGCTCTCATAGCCACACCACACAGGAGCTGGCCAGTGCTTTCTCATCGAGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR GCA 90 bp ACCTCGCTGAGGACAAAGGGCTTGGATGCTGGGTCCTTCCTAAGACGGGGCGGTGTGCGGAATATGCAGTaGTTTTGGGAAATTCCTGGA +
Preference number: 4 (lower is better)
Translates to: TSLRTKGLDAGSFLRRGGVRNMQ*FWEIPG
Trigger: TCCAGGAATTTCCCAAAAGCACTGCATATTCCGCAC...ACCGCCCCGTCTTAGGAAGGACCCAGCATCCAAGCCCTTTGTCCTCAGCGAGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
CDS-3UTR GCA 90 bp ATGTTCTCTATGACCCCTATCACCTGCAGCCCAGTCTTCTTACAGAAGGTCAGCGAGGAGGATGCTTCTTaGCCTGGTGGCGCAGAGCCA +
Preference number: 4 (lower is better)
Translates to: MFSMTPITCSPVFLQKVSEEDAS*PGGAEP
Trigger: TGGCTCTGCGCCACCAGGGCAAGAAGCATCCTCCTC...GCTGACCTTCTGTAAGAAGACTGGGCTGCAGGTGATAGGGGTCATAGAGAACAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000235055.2
CDS-3UTR CCA 90 bp AATGTAGGGGAATCAAGAGTCACCTCGCTGAGGACAAAGGGCTTGGATGCTGGGCTCATCAGAGGTCCCTaGAGGTGTGTCCACAACCAG +
Preference number: 4 (lower is better)
Translates to: NVGESRVTSLRTKGLDAGLIRGP*RCVHNQ
Trigger: CTGGTTGTGGACACACCTCCAGGGACCTCTGATGAG...CCCAGCATCCAAGCCCTTTGTCCTCAGCGAGGTGACTCTTGATTCCCCTACATT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR CCA 90 bp TCAGCCAAGGACATGGGGGCCTGCAGATCTCTGCATGGATGTAATCGCATAGTCCTCATCAGAGGTCCCTaGAGGTGTGTCCACAACCAG +
Preference number: 4 (lower is better)
Translates to: SAKDMGACRSLHGCNRIVLIRGP*RCVHNQ
Trigger: CTGGTTGTGGACACACCTCCAGGGACCTCTGATGAG...GACTATGCGATTACATCCATGCAGAGATCTGCAGGCCCCCATGTCCTTGGCTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR CCA 90 bp ACCAGATGTGCCGGTAAACCACAGTGTCACAAAAGGCACACAACACAGCATGTGGCACTCAGCGCAGTGTaGGCAGGTGAAGCCGCTCAT +
Preference number: 4 (lower is better)
Translates to: TRCAGKPQCHKRHTTQHVALSAV*AGEAAH
Trigger: ATGAGCGGCTTCACCTGCCCACACTGCGCTGAGTGC...CACATGCTGTGTTGTGTGCCTTTTGTGACACTGTGGTTTACCGGCACATCTGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR CCA 90 bp TCAGCCAAGGACATGGGGGCCTGCAGATCTCTGCATGGATGTAATCGCATAGTCCGCTGGAGAAGACATTaGTGCACTCAGCGCAGTGTG +
Preference number: 4 (lower is better)
Translates to: SAKDMGACRSLHGCNRIVRWRRH*CTQRSV
Trigger: CACACTGCGCTGAGTGCACCAATGTCTTCTCCAGCG...GACTATGCGATTACATCCATGCAGAGATCTGCAGGCCCCCATGTCCTTGGCTGA
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR CCA 90 bp GCTCCTGTGTGGTGTGGCTATGAGAGCAGCCTGTTGACCTGGGGCAGAAGTGACCTTTTGGGAAATTCCTaGATGAAGTCACGCCCTTCC +
Preference number: 4 (lower is better)
Translates to: APVWCGYESSLLTWGRSDLLGNS*MKSRPS
Trigger: GGAAGGGCGTGACTTCATCCAGGAATTTCCCAAAAG...GTCACTTCTGCCCCAGGTCAACAGGCTGCTCTCATAGCCACACCACACAGGAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
3UTR CAA 72 bp GATGAAGTCACGCCCTTCCTCCAAGCTCCTGGTAAGTaGGGAATCCAGGGGGACAGAGCCTGCAATGACAAA +
Preference number: 4 (lower is better)
Translates to: DEVTPFLQAPGK*GIQGDRACNDK
Trigger: TTTGTCATTGCAGGCTCTGTCCCCCTGGATTCCCAACTTACCAGGAGCTTGGAGGAAGGGCGTGACTTCATC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000234968.2
CDS-3UTR TCA 90 bp CCAGATGTGCCGGTAAACCACAGTGTCACAAAAGGCACACAACACAGCATGTGTCGCAGTGTGGGCAGGTaGAGCCGCTCATGTTCTCTA +
Preference number: 4 (lower is better)
Translates to: PDVPVNHSVTKGTQHSMCRSVGR*SRSCSL
Trigger: TAGAGAACATGAGCGGCTTCACCTGCCCACACTGCG...ACACATGCTGTGTTGTGTGCCTTTTGTGACACTGTGGTTTACCGGCACATCTGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR GCA 90 bp TTACCAGATGTGCCGGTAAACCACAGTGTCACAAAAGGCACACAACACAGCATGCCAGCTCCTCCCCACTaGCGCTGGAGAAGACATTGG +
Preference number: 4 (lower is better)
Translates to: LPDVPVNHSVTKGTQHSMPAPPH*RWRRHW
Trigger: CCAATGTCTTCTCCAGCGGCAGTGGGGAGGAGCTGG...CATGCTGTGTTGTGTGCCTTTTGTGACACTGTGGTTTACCGGCACATCTGGTAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR GCA 90 bp GCTCCTGTGTGGTGTGGCTATGAGAGCAGCCTGTTGACCTGGGGCAGAAGTGACCGTGAGTGCGGAATATaGAGTGCTTTTGGGAAATTC +
Preference number: 4 (lower is better)
Translates to: APVWCGYESSLLTWGRSDRECGI*SAFGKF
Trigger: GAATTTCCCAAAAGCACTGCATATTCCGCACTCACG...GTCACTTCTGCCCCAGGTCAACAGGCTGCTCTCATAGCCACACCACACAGGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
CDS-3UTR TCA 90 bp CATGTTCTCTATGACCCCTATCACCTGCAGCCCAGTCTTCTTACAGAAGGTCAGGAGATGCTCTGCTCCTaGTCCACAAAGACAGGCACC +
Preference number: 4 (lower is better)
Translates to: HVLYDPYHLQPSLLTEGQEMLCS*STKTGT
Trigger: GGTGCCTGTCTTTGTGGATCAGGAGCAGAGCATCTC...CTGACCTTCTGTAAGAAGACTGGGCTGCAGGTGATAGGGGTCATAGAGAACATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000234489.2
ENSMUST00000234674.2
CDS-3UTR TCA 90 bp ACCAGATGTGCCGGTAAACCACAGTGTCACAAAAGGCACACAACACAGCATGTGGAGATGCTCTGCTCCTaGTCCACAAAGACAGGCACC +
Preference number: 4 (lower is better)
Translates to: TRCAGKPQCHKRHTTQHVEMLCS*STKTGT
Trigger: GGTGCCTGTCTTTGTGGATCAGGAGCAGAGCATCTC...CACATGCTGTGTTGTGTGCCTTTTGTGACACTGTGGTTTACCGGCACATCTGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000044252.7
ENSMUST00000234489.2
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234674.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR TCA 90 bp CAGTGTCACAAAAGGCACACAACACAGCATGTGTGGGTCAGTCTCGATGAGAAACGCAGTGTGGGCAGGTaGAGCCGCTCATGTTCTCTA +
Preference number: 4 (lower is better)
Translates to: QCHKRHTTQHVWVSLDEKRSVGR*SRSCSL
Trigger: TAGAGAACATGAGCGGCTTCACCTGCCCACACTGCG...TTTCTCATCGAGACTGACCCACACATGCTGTGTTGTGTGCCTTTTGTGACACTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR GCA 90 bp AGTGCGGAATATGCAGTGCTTTTGGGAAATTCCTGGATGAAGTCACGCCCTTCCACTCCGTGGAGATGGTaGTTTTCCCAACGCCACCCT +
Preference number: 4 (lower is better)
Translates to: SAEYAVLLGNSWMKSRPSTPWRW*FSQRHP
Trigger: AGGGTGGCGTTGGGAAAAGCACCATCTCCACGGAGT...GGAAGGGCGTGACTTCATCCAGGAATTTCCCAAAAGCACTGCATATTCCGCACT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234968.2
ENSMUST00000235055.2
CDS-3UTR GCA 90 bp GCTCATGTTCTCTATGACCCCTATCACCTGCAGCCCAGTCTTCTTACAGAAGGTACTCCGTGGAGATGGTaGTTTTCCCAACGCCACCCT +
Preference number: 4 (lower is better)
Translates to: AHVLYDPYHLQPSLLTEGTPWRW*FSQRHP
Trigger: AGGGTGGCGTTGGGAAAAGCACCATCTCCACGGAGT...ACCTTCTGTAAGAAGACTGGGCTGCAGGTGATAGGGGTCATAGAGAACATGAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000235055.2
CDS-3UTR GCA 90 bp GCTGAGGACAAAGGGCTTGGATGCTGGGTCCTTCCTAAGACGGGGCGGTATGTTGTGCGGAATATGCAGTaGTTTTGGGAAATTCCTGGA +
Preference number: 4 (lower is better)
Translates to: AEDKGLGCWVLPKTGRYVVRNMQ*FWEIPG
Trigger: TCCAGGAATTTCCCAAAAGCACTGCATATTCCGCAC...AACATACCGCCCCGTCTTAGGAAGGACCCAGCATCCAAGCCCTTTGTCCTCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
CDS-3UTR CCA 90 bp CTCATGTTCTCTATGACCCCTATCACCTGCAGCCCAGTCTTCTTACAGAAGGTCCCAGGGCCAACTCCGTaGAGATGGTGCTTTTCCCAA +
Preference number: 4 (lower is better)
Translates to: LMFSMTPITCSPVFLQKVPGPTP*RWCFSQ
Trigger: TTGGGAAAAGCACCATCTCCACGGAGTTGGCCCTGG...GACCTTCTGTAAGAAGACTGGGCTGCAGGTGATAGGGGTCATAGAGAACATGAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000235055.2
CDS-3UTR CCA 90 bp CCACAGTGTCACAAAAGGCACACAACACAGCATGTGTGGGTCAGTCTCGATGAGTCAGTGCATGTTTCTTaGGACCTCTCCACACCACGG +
Preference number: 4 (lower is better)
Translates to: PQCHKRHTTQHVWVSLDESVHVS*DLSTPR
Trigger: CCGTGGTGTGGAGAGGTCCCAAGAAACATGCACTGA...CTCATCGAGACTGACCCACACATGCTGTGTTGTGTGCCTTTTGTGACACTGTGG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR CCA 90 bp AGGACAAAGGGCTTGGATGCTGGGTCCTTCCTAAGACGGGGCGGTATGTTTAATTCAGTGCATGTTTCTTaGGACCTCTCCACACCACGG +
Preference number: 4 (lower is better)
Translates to: RTKGLDAGSFLRRGGMFNSVHVS*DLSTPR
Trigger: CCGTGGTGTGGAGAGGTCCCAAGAAACATGCACTGA...ATTAAACATACCGCCCCGTCTTAGGAAGGACCCAGCATCCAAGCCCTTTGTCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR CCA 90 bp GATGTGCCGGTAAACCACAGTGTCACAAAAGGCACACAACACAGCATGTGTGGGTCAGTGCATGTTTCTTaGGACCTCTCCACACCACGG +
Preference number: 4 (lower is better)
Translates to: DVPVNHSVTKGTQHSMCGSVHVS*DLSTPR
Trigger: CCGTGGTGTGGAGAGGTCCCAAGAAACATGCACTGA...CCCACACATGCTGTGTTGTGTGCCTTTTGTGACACTGTGGTTTACCGGCACATC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR CCA 90 bp GCCAAGGACATGGGGGCCTGCAGATCTCTGCATGGATGTAATCGCATAGTCCAGCTTTTGGGAAATTCCTaGATGAAGTCACGCCCTTCC +
Preference number: 4 (lower is better)
Translates to: AKDMGACRSLHGCNRIVQLLGNS*MKSRPS
Trigger: GGAAGGGCGTGACTTCATCCAGGAATTTCCCAAAAG...CTGGACTATGCGATTACATCCATGCAGAGATCTGCAGGCCCCCATGTCCTTGGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
CDS-3UTR TCA 90 bp GAATATGCAGTGCTTTTGGGAAATTCCTGGATGAAGTCACGCCCTTCCTCCAAGGAGATGCTCTGCTCCTaGTCCACAAAGACAGGCACC +
Preference number: 4 (lower is better)
Translates to: EYAVLLGNSWMKSRPSSKEMLCS*STKTGT
Trigger: GGTGCCTGTCTTTGTGGATCAGGAGCAGAGCATCTC...CTTGGAGGAAGGGCGTGACTTCATCCAGGAATTTCCCAAAAGCACTGCATATTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000234489.2
ENSMUST00000234674.2
ENSMUST00000234968.2
CDS-3UTR TCA 90 bp CACAGTGTCACAAAAGGCACACAACACAGCATGTGTGGGTCAGTCTCGATGAGATGGGAAATTCCTGGATaGAGTCACGCCCTTCCTCCA +
Preference number: 4 (lower is better)
Translates to: HSVTKGTQHSMCGSVSMRWEIPG*SHALPP
Trigger: TGGAGGAAGGGCGTGACTTCATCCAGGAATTTCCCA...TCTCATCGAGACTGACCCACACATGCTGTGTTGTGTGCCTTTTGTGACACTGTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
CDS-3UTR CCA 90 bp GCTCATGTTCTCTATGACCCCTATCACCTGCAGCCCAGTCTTCTTACAGAAGGTATCCAGCATGTTTCTTaGGACCTCTCCACACCACGG +
Preference number: 4 (lower is better)
Translates to: AHVLYDPYHLQPSLLTEGIQHVS*DLSTPR
Trigger: CCGTGGTGTGGAGAGGTCCCAAGAAACATGCTGGAT...ACCTTCTGTAAGAAGACTGGGCTGCAGGTGATAGGGGTCATAGAGAACATGAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234674.2
CDS-3UTR TCA 90 bp AGGCTAAAGGTTAAGGCTGCTATTATCTCAAGGAATCAGGACGCAGGCTATCCCTGGGAAATTCCTGGATaGAGTCACGCCCTTCCTCCA +
Preference number: 4 (lower is better)
Translates to: RLKVKAAIISRNQDAGYPWEIPG*SHALPP
Trigger: TGGAGGAAGGGCGTGACTTCATCCAGGAATTTCCCA...GGGATAGCCTGCGTCCTGATTCCTTGAGATAATAGCAGCCTTAACCTTTAGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
CDS-3UTR GCA 90 bp ACGAAAGCCTATAGGCTAAAGGTTAAGGCTGCTATTATCTCAAGGAATCAGGACCCAGCTCCTCCCCACTaGCGCTGGAGAAGACATTGG +
Preference number: 4 (lower is better)
Translates to: TKAYRLKVKAAIISRNQDPAPPH*RWRRHW
Trigger: CCAATGTCTTCTCCAGCGGCAGTGGGGAGGAGCTGG...GTCCTGATTCCTTGAGATAATAGCAGCCTTAACCTTTAGCCTATAGGCTTTCGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR GCA 90 bp AGTTTGGTGAAGCTAGTGTCAGCCAAGGACATGGGGGCCTGCAGATCTCTGCATCGTGAGTGCGGAATATaGAGTGCTTTTGGGAAATTC +
Preference number: 4 (lower is better)
Translates to: SLVKLVSAKDMGACRSLHRECGI*SAFGKF
Trigger: GAATTTCCCAAAAGCACTGCATATTCCGCACTCACG...ATGCAGAGATCTGCAGGCCCCCATGTCCTTGGCTGACACTAGCTTCACCAAACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
CDS-3UTR CCA 90 bp GCGGTATGTTTAATAGCAGAGTTCTGTAAAGTTACCAGATGTGCCGGTAAACCAGCACTCAGCGCAGTGTaGGCAGGTGAAGCCGCTCAT +
Preference number: 4 (lower is better)
Translates to: AVCLIAEFCKVTRCAGKPALSAV*AGEAAH
Trigger: ATGAGCGGCTTCACCTGCCCACACTGCGCTGAGTGC...TGGTTTACCGGCACATCTGGTAACTTTACAGAACTCTGCTATTAAACATACCGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR TCA 90 bp GGGGCGGTATGTTTAATAGCAGAGTTCTGTAAAGTTACCAGATGTGCCGGTAAAGAGATGCTCTGCTCCTaGTCCACAAAGACAGGCACC +
Preference number: 4 (lower is better)
Translates to: GAVCLIAEFCKVTRCAGKEMLCS*STKTGT
Trigger: GGTGCCTGTCTTTGTGGATCAGGAGCAGAGCATCTC...TTTACCGGCACATCTGGTAACTTTACAGAACTCTGCTATTAAACATACCGCCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000044252.7
ENSMUST00000234489.2
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234674.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR TCA 90 bp TATAGGCTAAAGGTTAAGGCTGCTATTATCTCAAGGAATCAGGACGCAGGCTATCGCAGTGTGGGCAGGTaGAGCCGCTCATGTTCTCTA +
Preference number: 4 (lower is better)
Translates to: YRLKVKAAIISRNQDAGYRSVGR*SRSCSL
Trigger: TAGAGAACATGAGCGGCTTCACCTGCCCACACTGCG...ATAGCCTGCGTCCTGATTCCTTGAGATAATAGCAGCCTTAACCTTTAGCCTATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR GCA 90 bp GCCAAGGACATGGGGGCCTGCAGATCTCTGCATGGATGTAATCGCATAGTCCAGACGTCAGACACAAACTaGTTTATCAGTGCATGTTTC +
Preference number: 4 (lower is better)
Translates to: AKDMGACRSLHGCNRIVQTSDTN*FISACF
Trigger: GAAACATGCACTGATAAAGCAGTTTGTGTCTGACGT...CTGGACTATGCGATTACATCCATGCAGAGATCTGCAGGCCCCCATGTCCTTGGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR GCA 90 bp TTACCAGATGTGCCGGTAAACCACAGTGTCACAAAAGGCACACAACACAGCATGATGACCCCTATCACCTaGAGCCCAGTCTTCTTACAG +
Preference number: 4 (lower is better)
Translates to: LPDVPVNHSVTKGTQHSMMTPIT*SPVFLQ
Trigger: CTGTAAGAAGACTGGGCTGCAGGTGATAGGGGTCAT...CATGCTGTGTTGTGTGCCTTTTGTGACACTGTGGTTTACCGGCACATCTGGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR GCA 90 bp CAGTGTCACAAAAGGCACACAACACAGCATGTGTGGGTCAGTCTCGATGAGAAAATGACCCCTATCACCTaGAGCCCAGTCTTCTTACAG +
Preference number: 4 (lower is better)
Translates to: QCHKRHTTQHVWVSLDEKMTPIT*SPVFLQ
Trigger: CTGTAAGAAGACTGGGCTGCAGGTGATAGGGGTCAT...TTTCTCATCGAGACTGACCCACACATGCTGTGTTGTGTGCCTTTTGTGACACTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR CCA 90 bp CTAATACTGCTTGTTCCAGACATGAAATGTAGGGGAATCAAGAGTCACCTCGCTCCAGGGCCAACTCCGTaGAGATGGTGCTTTTCCCAA +
Preference number: 4 (lower is better)
Translates to: LILLVPDMKCRGIKSHLAPGPTP*RWCFSQ
Trigger: TTGGGAAAAGCACCATCTCCACGGAGTTGGCCCTGG...AGCGAGGTGACTCTTGATTCCCCTACATTTCATGTCTGGAACAAGCAGTATTAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000044252.7
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234968.2
CDS-3UTR CCA 90 bp GGGGCGGTATGTTTAATAGCAGAGTTCTGTAAAGTTACCAGATGTGCCGGTAAACCAGGGCCAACTCCGTaGAGATGGTGCTTTTCCCAA +
Preference number: 4 (lower is better)
Translates to: GAVCLIAEFCKVTRCAGKPGPTP*RWCFSQ
Trigger: TTGGGAAAAGCACCATCTCCACGGAGTTGGCCCTGG...TTTACCGGCACATCTGGTAACTTTACAGAACTCTGCTATTAAACATACCGCCCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000044252.7
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234968.2
CDS-3UTR CCA 90 bp GGCTGGACGAAAGCCTATAGGCTAAAGGTTAAGGCTGCTATTATCTCAAGGAATCGCTGGAGAAGACATTaGTGCACTCAGCGCAGTGTG +
Preference number: 4 (lower is better)
Translates to: GWTKAYRLKVKAAIISRNRWRRH*CTQRSV
Trigger: CACACTGCGCTGAGTGCACCAATGTCTTCTCCAGCG...ATTCCTTGAGATAATAGCAGCCTTAACCTTTAGCCTATAGGCTTTCGTCCAGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR TCA 90 bp TTAATAGCAGAGTTCTGTAAAGTTACCAGATGTGCCGGTAAACCACAGTGTCACCGCTCATGTTCTCTATaGCCCCTATCACCTGCAGCC +
Preference number: 4 (lower is better)
Translates to: LIAEFCKVTRCAGKPQCHRSCSL*PLSPAA
Trigger: GGCTGCAGGTGATAGGGGTCATAGAGAACATGAGCG...GTGACACTGTGGTTTACCGGCACATCTGGTAACTTTACAGAACTCTGCTATTAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR TCA 90 bp TGTTTAATAGCAGAGTTCTGTAAAGTTACCAGATGTGCCGGTAAACCACAGTGTCGCAGTGTGGGCAGGTaGAGCCGCTCATGTTCTCTA +
Preference number: 4 (lower is better)
Translates to: CLIAEFCKVTRCAGKPQCRSVGR*SRSCSL
Trigger: TAGAGAACATGAGCGGCTTCACCTGCCCACACTGCG...ACACTGTGGTTTACCGGCACATCTGGTAACTTTACAGAACTCTGCTATTAAACA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR GCA 90 bp ATAGCAGAGTTCTGTAAAGTTACCAGATGTGCCGGTAAACCACAGTGTCACAAAACTCCGTGGAGATGGTaGTTTTCCCAACGCCACCCT +
Preference number: 4 (lower is better)
Translates to: IAEFCKVTRCAGKPQCHKTPWRW*FSQRHP
Trigger: AGGGTGGCGTTGGGAAAAGCACCATCTCCACGGAGT...TTTGTGACACTGTGGTTTACCGGCACATCTGGTAACTTTACAGAACTCTGCTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 7 transcripts:
ENSMUST00000044252.7
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234968.2
CDS-3UTR GCA 90 bp GTGTCAGCCAAGGACATGGGGGCCTGCAGATCTCTGCATGGATGTAATCGCATAACGTCAGACACAAACTaGTTTATCAGTGCATGTTTC +
Preference number: 4 (lower is better)
Translates to: VSAKDMGACRSLHGCNRITSDTN*FISACF
Trigger: GAAACATGCACTGATAAAGCAGTTTGTGTCTGACGT...TATGCGATTACATCCATGCAGAGATCTGCAGGCCCCCATGTCCTTGGCTGACAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR GCA 90 bp TGGACGAAAGCCTATAGGCTAAAGGTTAAGGCTGCTATTATCTCAAGGAATCAGTGGAGAAGACATTGGTaGACTCAGCGCAGTGTGGGC +
Preference number: 4 (lower is better)
Translates to: WTKAYRLKVKAAIISRNQWRRHW*TQRSVG
Trigger: GCCCACACTGCGCTGAGTGCACCAATGTCTTCTCCA...CTGATTCCTTGAGATAATAGCAGCCTTAACCTTTAGCCTATAGGCTTTCGTCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR CCA 90 bp TGGACGAAAGCCTATAGGCTAAAGGTTAAGGCTGCTATTATCTCAAGGAATCAGCCAACTCCGTGGAGATaGTGCTTTTCCCAACGCCAC +
Preference number: 4 (lower is better)
Translates to: WTKAYRLKVKAAIISRNQPTPWR*CFSQRH
Trigger: GTGGCGTTGGGAAAAGCACCATCTCCACGGAGTTGG...CTGATTCCTTGAGATAATAGCAGCCTTAACCTTTAGCCTATAGGCTTTCGTCCA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000044252.7
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234968.2
CDS-3UTR CCA 90 bp TATAGGCTAAAGGTTAAGGCTGCTATTATCTCAAGGAATCAGGACGCAGGCTATCCAGGGCCAACTCCGTaGAGATGGTGCTTTTCCCAA +
Preference number: 4 (lower is better)
Translates to: YRLKVKAAIISRNQDAGYPGPTP*RWCFSQ
Trigger: TTGGGAAAAGCACCATCTCCACGGAGTTGGCCCTGG...ATAGCCTGCGTCCTGATTCCTTGAGATAATAGCAGCCTTAACCTTTAGCCTATA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000044252.7
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234968.2
CDS-3UTR CCA 90 bp TTAATAGCAGAGTTCTGTAAAGTTACCAGATGTGCCGGTAAACCACAGTGTCACCGCTGGAGAAGACATTaGTGCACTCAGCGCAGTGTG +
Preference number: 4 (lower is better)
Translates to: LIAEFCKVTRCAGKPQCHRWRRH*CTQRSV
Trigger: CACACTGCGCTGAGTGCACCAATGTCTTCTCCAGCG...GTGACACTGTGGTTTACCGGCACATCTGGTAACTTTACAGAACTCTGCTATTAA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR CCA 90 bp GTATGTTTAATAGCAGAGTTCTGTAAAGTTACCAGATGTGCCGGTAAACCACAGCCAACTCCGTGGAGATaGTGCTTTTCCCAACGCCAC +
Preference number: 4 (lower is better)
Translates to: VCLIAEFCKVTRCAGKPQPTPWR*CFSQRH
Trigger: GTGGCGTTGGGAAAAGCACCATCTCCACGGAGTTGG...CTGTGGTTTACCGGCACATCTGGTAACTTTACAGAACTCTGCTATTAAACATAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000044252.7
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234968.2
CDS-3UTR CCA 90 bp TGTTTAATAGCAGAGTTCTGTAAAGTTACCAGATGTGCCGGTAAACCACAGTGTCCAGGGCCAACTCCGTaGAGATGGTGCTTTTCCCAA +
Preference number: 4 (lower is better)
Translates to: CLIAEFCKVTRCAGKPQCPGPTP*RWCFSQ
Trigger: TTGGGAAAAGCACCATCTCCACGGAGTTGGCCCTGG...ACACTGTGGTTTACCGGCACATCTGGTAACTTTACAGAACTCTGCTATTAAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 7 transcripts:
ENSMUST00000044252.7
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234968.2
CDS-3UTR TCA 90 bp TTACTAATACTGCTTGTTCCAGACATGAAATGTAGGGGAATCAAGAGTCACCTCTGGGAAATTCCTGGATaGAGTCACGCCCTTCCTCCA +
Preference number: 4 (lower is better)
Translates to: LLILLVPDMKCRGIKSHLWEIPG*SHALPP
Trigger: TGGAGGAAGGGCGTGACTTCATCCAGGAATTTCCCA...GAGGTGACTCTTGATTCCCCTACATTTCATGTCTGGAACAAGCAGTATTAGTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
CDS-3UTR GCA 90 bp CCAGATGTGCCGGTAAACCACAGTGTCACAAAAGGCACACAACACAGCATGTGTAAACTGCTTTATCAGTaGATGTTTCTTGGGACCTCT +
Preference number: 4 (lower is better)
Translates to: PDVPVNHSVTKGTQHSMCKLLYQ*MFLGTS
Trigger: AGAGGTCCCAAGAAACATGCACTGATAAAGCAGTTT...ACACATGCTGTGTTGTGTGCCTTTTGTGACACTGTGGTTTACCGGCACATCTGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR GCA 90 bp AGATGTGCCGGTAAACCACAGTGTCACAAAAGGCACACAACACAGCATGTGTGGACGTCAGACACAAACTaGTTTATCAGTGCATGTTTC +
Preference number: 4 (lower is better)
Translates to: RCAGKPQCHKRHTTQHVWTSDTN*FISACF
Trigger: GAAACATGCACTGATAAAGCAGTTTGTGTCTGACGT...CCACACATGCTGTGTTGTGTGCCTTTTGTGACACTGTGGTTTACCGGCACATCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR GCA 90 bp AGTGCGGAATATGCAGTGCTTTTGGGAAATTCCTGGATGAAGTCACGCCCTTCCACGTCAGACACAAACTaGTTTATCAGTGCATGTTTC +
Preference number: 4 (lower is better)
Translates to: SAEYAVLLGNSWMKSRPSTSDTN*FISACF
Trigger: GAAACATGCACTGATAAAGCAGTTTGTGTCTGACGT...GGAAGGGCGTGACTTCATCCAGGAATTTCCCAAAAGCACTGCATATTCCGCACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234968.2
CDS-3UTR CCA 90 bp TGTAAAGTTACCAGATGTGCCGGTAAACCACAGTGTCACAAAAGGCACACAACACTTTTGGGAAATTCCTaGATGAAGTCACGCCCTTCC +
Preference number: 4 (lower is better)
Translates to: CKVTRCAGKPQCHKRHTTLLGNS*MKSRPS
Trigger: GGAAGGGCGTGACTTCATCCAGGAATTTCCCAAAAG...TGTTGTGTGCCTTTTGTGACACTGTGGTTTACCGGCACATCTGGTAACTTTACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
CDS-3UTR GCA 90 bp TGTAAAGTTACCAGATGTGCCGGTAAACCACAGTGTCACAAAAGGCACACAACAGTGCGGAATATGCAGTaGTTTTGGGAAATTCCTGGA +
Preference number: 4 (lower is better)
Translates to: CKVTRCAGKPQCHKRHTTVRNMQ*FWEIPG
Trigger: TCCAGGAATTTCCCAAAAGCACTGCATATTCCGCAC...TGTTGTGTGCCTTTTGTGACACTGTGGTTTACCGGCACATCTGGTAACTTTACA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
CDS-3UTR GCA 90 bp GGCTGGACGAAAGCCTATAGGCTAAAGGTTAAGGCTGCTATTATCTCAAGGAATCGTGAGTGCGGAATATaGAGTGCTTTTGGGAAATTC +
Preference number: 4 (lower is better)
Translates to: GWTKAYRLKVKAAIISRNRECGI*SAFGKF
Trigger: GAATTTCCCAAAAGCACTGCATATTCCGCACTCACG...ATTCCTTGAGATAATAGCAGCCTTAACCTTTAGCCTATAGGCTTTCGTCCAGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
CDS-3UTR GCA 90 bp TGTAAAGTTACCAGATGTGCCGGTAAACCACAGTGTCACAAAAGGCACACAACAAAACTGCTTTATCAGTaGATGTTTCTTGGGACCTCT +
Preference number: 4 (lower is better)
Translates to: CKVTRCAGKPQCHKRHTTKLLYQ*MFLGTS
Trigger: AGAGGTCCCAAGAAACATGCACTGATAAAGCAGTTT...TGTTGTGTGCCTTTTGTGACACTGTGGTTTACCGGCACATCTGGTAACTTTACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR GCA 90 bp TTACTAATACTGCTTGTTCCAGACATGAAATGTAGGGGAATCAAGAGTCACCTCCGTGAGTGCGGAATATaGAGTGCTTTTGGGAAATTC +
Preference number: 4 (lower is better)
Translates to: LLILLVPDMKCRGIKSHLRECGI*SAFGKF
Trigger: GAATTTCCCAAAAGCACTGCATATTCCGCACTCACG...GAGGTGACTCTTGATTCCCCTACATTTCATGTCTGGAACAAGCAGTATTAGTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
CDS-3UTR GCA 90 bp ACGAAAGCCTATAGGCTAAAGGTTAAGGCTGCTATTATCTCAAGGAATCAGGACAAACTGCTTTATCAGTaGATGTTTCTTGGGACCTCT +
Preference number: 4 (lower is better)
Translates to: TKAYRLKVKAAIISRNQDKLLYQ*MFLGTS
Trigger: AGAGGTCCCAAGAAACATGCACTGATAAAGCAGTTT...GTCCTGATTCCTTGAGATAATAGCAGCCTTAACCTTTAGCCTATAGGCTTTCGT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR GCA 90 bp TGTTTAATAGCAGAGTTCTGTAAAGTTACCAGATGTGCCGGTAAACCACAGTGTAAACTGCTTTATCAGTaGATGTTTCTTGGGACCTCT +
Preference number: 4 (lower is better)
Translates to: CLIAEFCKVTRCAGKPQCKLLYQ*MFLGTS
Trigger: AGAGGTCCCAAGAAACATGCACTGATAAAGCAGTTT...ACACTGTGGTTTACCGGCACATCTGGTAACTTTACAGAACTCTGCTATTAAACA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS GCA 90 bp GACCTAAAAAGGGAACTCCAGCCAGCCGGGCCAGCTCCTCCCCACTaGCGCTGGAGAAGACATTGGTGCACTCAGCGCAGTGTGGGCAGG +
Preference number: 5 (lower is better)
Translates to: DLKRELQPAGPAPPH*RWRRHWCTQRSVGR
Trigger: CCTGCCCACACTGCGCTGAGTGCACCAATGTCTTCTCCAGCGGCAGTGGGGAGGAGCTGGCCCGGCTGGCTGGAGTTCCCTTTTTAGGTC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000234968.2
CDS-3UTR CAA 90 bp CACCTCGCTGAGGACAAAGGGCTTGGATGCTGGGTCCTTCCTAAGACGGGGCGGCACTGGTGCACGGCCTaGCCTTGTGCACGGAGCATG +
Preference number: 5 (lower is better)
Translates to: HLAEDKGLGCWVLPKTGRHWCTA*PCARSM
Trigger: CATGCTCCGTGCACAAGGCAAGGCCGTGCACCAGTG...CCGCCCCGTCTTAGGAAGGACCCAGCATCCAAGCCCTTTGTCCTCAGCGAGGTG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234489.2
ENSMUST00000234598.2
ENSMUST00000234968.2
CDS TCA 90 bp AACAAGGATGATGTGTCGCACCCCGGCCAGGTTCCCGGGTTCTGGTaGGAAACAGGAGTTGGGGTGTCTGCACGCTCACCGGCAGCAGCC +
Preference number: 5 (lower is better)
Translates to: NKDDVSHPGQVPGFW*ETGVGVSARSPAAA
Trigger: GGCTGCTGCCGGTGAGCGTGCAGACACCCCAACTCCTGTTTCTCACCAGAACCCGGGAACCTGGCCGGGGTGCGACACATCATCCTTGTT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234261.2
ENSMUST00000234579.2
CDS GCA 90 bp GACAGGCACCCAGCCATTGTCACACTGGTGCACGGCCTTGCCTTGTaGACGGAGCATGTGTGGTATGCTGGGACCGCACAGGTCCACATC +
Preference number: 5 (lower is better)
Translates to: DRHPAIVTLVHGLAL*TEHVWYAGTAQVHI
Trigger: GATGTGGACCTGTGCGGTCCCAGCATACCACACATGCTCCGTGCACAAGGCAAGGCCGTGCACCAGTGTGACAATGGCTGGGTGCCTGTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234489.2
ENSMUST00000234583.2
ENSMUST00000234598.2
ENSMUST00000234968.2
CDS-3UTR CAA 90 bp CAGAGCCTAAAAAGGGAACTCCAGCCAGCCGGGCCAGCTCCTCCCCACTGCCGCGTAATCCCATGTTTCTaGGGACCTCTCCACACCACG +
Preference number: 5 (lower is better)
Translates to: QSLKRELQPAGPAPPHCRVIPCF*GPLHTT
Trigger: CGTGGTGTGGAGAGGTCCCAAGAAACATGGGATTAC...GCGGCAGTGGGGAGGAGCTGGCCCGGCTGGCTGGAGTTCCCTTTTTAGGCTCTG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000234489.2
CDS-3UTR CAA 90 bp CACTGGCCAGCTCCTGTGTGGTGTGGCTATGAGAGCAGCCTGTTGACCTGGGGCGGTGAGAAACAGGAGTaGGGGTGTCTGCACGCTCAC +
Preference number: 5 (lower is better)
Translates to: HWPAPVWCGYESSLLTWGGEKQE*GCLHAH
Trigger: GTGAGCGTGCAGACACCCCAACTCCTGTTTCTCACC...GCCCCAGGTCAACAGGCTGCTCTCATAGCCACACCACACAGGAGCTGGCCAGTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234261.2
ENSMUST00000234579.2
CDS TCA 90 bp AGATGGTGCTTTTCCCAACGCCACCCTTTCCAGAAAGAACAAGGATaGTGTGTCGCACCCCGGCCAGGTTCCCGGGTTCGGCAGCAGCCT +
Preference number: 5 (lower is better)
Translates to: RWCFSQRHPFQKEQG*CVAPRPGSRVRQQP
Trigger: AGGCTGCTGCCGAACCCGGGAACCTGGCCGGGGTGCGACACATCATCCTTGTTCTTTCTGGAAAGGGTGGCGTTGGGAAAAGCACCATCT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234293.2
CDS GCA 90 bp CACACTGGTGCACGGCCTTGCCTTGTGCACGGAGCATGTGTGGTATaGTGGGACCGCACAGGTCCACATCTAGGATTCCCACCTTCTTGC +
Preference number: 5 (lower is better)
Translates to: HTGARPCLVHGACVV*WDRTGPHLGFPPSC
Trigger: GCAAGAAGGTGGGAATCCTAGATGTGGACCTGTGCGGTCCCAGCATACCACACATGCTCCGTGCACAAGGCAAGGCCGTGCACCAGTGTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234489.2
ENSMUST00000234583.2
ENSMUST00000234968.2
CDS CCA 90 bp ACTGGTGCACGGCCTTGCCTTGTGCACGGAGCATGTGTGGTATGCTaGGACCGCACAGGTCCACATCTAGGATTCCCACCTTCTTGCCCT +
Preference number: 5 (lower is better)
Translates to: TGARPCLVHGACVVC*DRTGPHLGFPPSCP
Trigger: AGGGCAAGAAGGTGGGAATCCTAGATGTGGACCTGTGCGGTCCCAGCATACCACACATGCTCCGTGCACAAGGCAAGGCCGTGCACCAGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234489.2
ENSMUST00000234583.2
ENSMUST00000234968.2
CDS-3UTR CAA 90 bp CTAGTGTCAGCCAAGGACATGGGGGCCTGCAGATCTCTGCATGGATGTAATCGCAGGATTCCCACCTTCTaGCCCTGGTGGCGCAGAGCC +
Preference number: 5 (lower is better)
Translates to: LVSAKDMGACRSLHGCNRRIPTF*PWWRRA
Trigger: GGCTCTGCGCCACCAGGGCAAGAAGGTGGGAATCCT...GCGATTACATCCATGCAGAGATCTGCAGGCCCCCATGTCCTTGGCTGACACTAG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234968.2
CDS-3UTR CAA 90 bp ATGAGAAAGCACTGGCCAGCTCCTGTGTGGTGTGGCTATGAGAGCAGCCTGTTGAGGATTCCCACCTTCTaGCCCTGGTGGCGCAGAGCC +
Preference number: 5 (lower is better)
Translates to: MRKHWPAPVWCGYESSLLRIPTF*PWWRRA
Trigger: GGCTCTGCGCCACCAGGGCAAGAAGGTGGGAATCCT...CAACAGGCTGCTCTCATAGCCACACCACACAGGAGCTGGCCAGTGCTTTCTCAT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234968.2
CDS TCA 90 bp AGATGGTGCTTTTCCCAACGCCACCCTTTCCAGAAAGAACAAGGATaGTGTGTCGCACCCCGGCCAGGTTCCCGGGTTCTGCACGCTCAC +
Preference number: 5 (lower is better)
Translates to: RWCFSQRHPFQKEQG*CVAPRPGSRVLHAH
Trigger: GTGAGCGTGCAGAACCCGGGAACCTGGCCGGGGTGCGACACATCATCCTTGTTCTTTCTGGAAAGGGTGGCGTTGGGAAAAGCACCATCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 6 transcripts:
ENSMUST00000044252.7
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234583.2
ENSMUST00000234968.2
ENSMUST00000235055.2
CDS-3UTR CAA 90 bp AGTTTGGTGAAGCTAGTGTCAGCCAAGGACATGGGGGCCTGCAGATCTCTGCATGTGCACGGCCTTGCCTaGTGCACGGAGCATGTGTGG +
Preference number: 5 (lower is better)
Translates to: SLVKLVSAKDMGACRSLHVHGLA*CTEHVW
Trigger: CCACACATGCTCCGTGCACAAGGCAAGGCCGTGCAC...ATGCAGAGATCTGCAGGCCCCCATGTCCTTGGCTGACACTAGCTTCACCAAACT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234489.2
ENSMUST00000234598.2
ENSMUST00000234968.2
CDS-3UTR CAA 90 bp GCTGAGGACAAAGGGCTTGGATGCTGGGTCCTTCCTAAGACGGGGCGGTATGTTCCGCTGGAGAAGACATaGGTGCACTCAGCGCAGTGT +
Preference number: 5 (lower is better)
Translates to: AEDKGLGCWVLPKTGRYVPLEKT*VHSAQC
Trigger: ACACTGCGCTGAGTGCACCAATGTCTTCTCCAGCGG...AACATACCGCCCCGTCTTAGGAAGGACCCAGCATCCAAGCCCTTTGTCCTCAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR CAA 90 bp GTCTCGATGAGAAAGCACTGGCCAGCTCCTGTGTGGTGTGGCTATGAGAGCAGCCCGCTGGAGAAGACATaGGTGCACTCAGCGCAGTGT +
Preference number: 5 (lower is better)
Translates to: VSMRKHWPAPVWCGYESSPLEKT*VHSAQC
Trigger: ACACTGCGCTGAGTGCACCAATGTCTTCTCCAGCGG...GCTGCTCTCATAGCCACACCACACAGGAGCTGGCCAGTGCTTTCTCATCGAGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR CAA 90 bp CTTACAGAAGGTCAGCTCCCGCCTCACATCCCCAATAGACACCGCCTGTGGTGTGGTGAGAAACAGGAGTaGGGGTGTCTGCACGCTCAC +
Preference number: 5 (lower is better)
Translates to: LTEGQLPPHIPNRHRLWCGEKQE*GCLHAH
Trigger: GTGAGCGTGCAGACACCCCAACTCCTGTTTCTCACC...ACACCACAGGCGGTGTCTATTGGGGATGTGAGGCGGGAGCTGACCTTCTGTAAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234261.2
ENSMUST00000234579.2
CDS-3UTR CAA 90 bp GCTCCTGTGTGGTGTGGCTATGAGAGCAGCCTGTTGACCTGGGGCAGAAGTGACATCAGTGCATGTTTCTaGGGACCTCTCCACACCACG +
Preference number: 5 (lower is better)
Translates to: APVWCGYESSLLTWGRSDISACF*GPLHTT
Trigger: CGTGGTGTGGAGAGGTCCCAAGAAACATGCACTGAT...GTCACTTCTGCCCCAGGTCAACAGGCTGCTCTCATAGCCACACCACACAGGAGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS TCA 90 bp AGATGGTGCTTTTCCCAACGCCACCCTTTCCAGAAAGAACAAGGATaGTGTGTCGCACCCCGGCCAGGTTCCCGGGTTCTGGTGAGAAAC +
Preference number: 5 (lower is better)
Translates to: RWCFSQRHPFQKEQG*CVAPRPGSRVLVRN
Trigger: GTTTCTCACCAGAACCCGGGAACCTGGCCGGGGTGCGACACATCATCCTTGTTCTTTCTGGAAAGGGTGGCGTTGGGAAAAGCACCATCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234261.2
ENSMUST00000234579.2
CDS CCA 90 bp GGTCCCTGGAGGTGTGTCCACAACCAGATAATCCAGCATGTTTCTTaGGACCTCTCCACACCACGGCCTCATCAGGGTTTTCCAGCAGGA +
Preference number: 5 (lower is better)
Translates to: GPWRCVHNQIIQHVS*DLSTPRPHQGFPAG
Trigger: TCCTGCTGGAAAACCCTGATGAGGCCGTGGTGTGGAGAGGTCCCAAGAAACATGCTGGATTATCTGGTTGTGGACACACCTCCAGGGACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234674.2
CDS-3UTR CAA 90 bp ACCAGATGTGCCGGTAAACCACAGTGTCACAAAAGGCACACAACACAGCATGTGCACTGGTGCACGGCCTaGCCTTGTGCACGGAGCATG +
Preference number: 5 (lower is better)
Translates to: TRCAGKPQCHKRHTTQHVHWCTA*PCARSM
Trigger: CATGCTCCGTGCACAAGGCAAGGCCGTGCACCAGTG...CACATGCTGTGTTGTGTGCCTTTTGTGACACTGTGGTTTACCGGCACATCTGGT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234489.2
ENSMUST00000234598.2
ENSMUST00000234968.2
CDS-3UTR CAA 90 bp CACAGTGTCACAAAAGGCACACAACACAGCATGTGTGGGTCAGTCTCGATGAGACACTGGTGCACGGCCTaGCCTTGTGCACGGAGCATG +
Preference number: 5 (lower is better)
Translates to: HSVTKGTQHSMCGSVSMRHWCTA*PCARSM
Trigger: CATGCTCCGTGCACAAGGCAAGGCCGTGCACCAGTG...TCTCATCGAGACTGACCCACACATGCTGTGTTGTGTGCCTTTTGTGACACTGTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234489.2
ENSMUST00000234598.2
ENSMUST00000234968.2
CDS-3UTR CAA 90 bp AGAGTCACCTCGCTGAGGACAAAGGGCTTGGATGCTGGGTCCTTCCTAAGACGGAATCCAGCATGTTTCTaGGGACCTCTCCACACCACG +
Preference number: 5 (lower is better)
Translates to: RVTSLRTKGLDAGSFLRRNPACF*GPLHTT
Trigger: CGTGGTGTGGAGAGGTCCCAAGAAACATGCTGGATT...CCGTCTTAGGAAGGACCCAGCATCCAAGCCCTTTGTCCTCAGCGAGGTGACTCT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234674.2
CDS-3UTR CAA 90 bp ACGTCAGACACAAACTGCTTTATCAGTGCATGTTTCTTGGGACCTCTCCACACCAGGATTCCCACCTTCTaGCCCTGGTGGCGCAGAGCC +
Preference number: 5 (lower is better)
Translates to: TSDTNCFISACFLGPLHTRIPTF*PWWRRA
Trigger: GGCTCTGCGCCACCAGGGCAAGAAGGTGGGAATCCT...GGTGTGGAGAGGTCCCAAGAAACATGCACTGATAAAGCAGTTTGTGTCTGACGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234579.2
CDS-3UTR CAA 90 bp AGGCTAAAGGTTAAGGCTGCTATTATCTCAAGGAATCAGGACGCAGGCTATCCCCACTGGTGCACGGCCTaGCCTTGTGCACGGAGCATG +
Preference number: 5 (lower is better)
Translates to: RLKVKAAIISRNQDAGYPHWCTA*PCARSM
Trigger: CATGCTCCGTGCACAAGGCAAGGCCGTGCACCAGTG...GGGATAGCCTGCGTCCTGATTCCTTGAGATAATAGCAGCCTTAACCTTTAGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234489.2
ENSMUST00000234598.2
ENSMUST00000234968.2
CDS-3UTR CAA 90 bp TCAGTCTCGATGAGAAAGCACTGGCCAGCTCCTGTGTGGTGTGGCTATGAGAGCATCAGTGCATGTTTCTaGGGACCTCTCCACACCACG +
Preference number: 5 (lower is better)
Translates to: SVSMRKHWPAPVWCGYESISACF*GPLHTT
Trigger: CGTGGTGTGGAGAGGTCCCAAGAAACATGCACTGAT...GCTCTCATAGCCACACCACACAGGAGCTGGCCAGTGCTTTCTCATCGAGACTGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR CAA 90 bp CACTGGCCAGCTCCTGTGTGGTGTGGCTATGAGAGCAGCCTGTTGACCTGGGGCGAATATGCAGTGCTTTaGGGAAATTCCTGGATGAAG +
Preference number: 5 (lower is better)
Translates to: HWPAPVWCGYESSLLTWGEYAVL*GNSWMK
Trigger: CTTCATCCAGGAATTTCCCAAAAGCACTGCATATTC...GCCCCAGGTCAACAGGCTGCTCTCATAGCCACACCACACAGGAGCTGGCCAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
CDS-3UTR CAA 90 bp GATGTGCCGGTAAACCACAGTGTCACAAAAGGCACACAACACAGCATGTGTGGGCAAGCTCCTGGTAAGTaGGGAATCCAGGGGGACAGA +
Preference number: 5 (lower is better)
Translates to: DVPVNHSVTKGTQHSMCGQAPGK*GIQGDR
Trigger: TCTGTCCCCCTGGATTCCCAACTTACCAGGAGCTTG...CCCACACATGCTGTGTTGTGTGCCTTTTGTGACACTGTGGTTTACCGGCACATC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
CDS-3UTR CAA 90 bp GCCGGTAAACCACAGTGTCACAAAAGGCACACAACACAGCATGTGTGGGTCAGTCAAGCTCCTGGTAAGTaGGGAATCCAGGGGGACAGA +
Preference number: 5 (lower is better)
Translates to: AGKPQCHKRHTTQHVWVSQAPGK*GIQGDR
Trigger: TCTGTCCCCCTGGATTCCCAACTTACCAGGAGCTTG...ACTGACCCACACATGCTGTGTTGTGTGCCTTTTGTGACACTGTGGTTTACCGGC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
CDS-3UTR CAA 90 bp TGTAAAGTTACCAGATGTGCCGGTAAACCACAGTGTCACAAAAGGCACACAACAGTGCACGGCCTTGCCTaGTGCACGGAGCATGTGTGG +
Preference number: 5 (lower is better)
Translates to: CKVTRCAGKPQCHKRHTTVHGLA*CTEHVW
Trigger: CCACACATGCTCCGTGCACAAGGCAAGGCCGTGCAC...TGTTGTGTGCCTTTTGTGACACTGTGGTTTACCGGCACATCTGGTAACTTTACA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234489.2
ENSMUST00000234598.2
ENSMUST00000234968.2
CDS-3UTR CAA 90 bp TTACCAGATGTGCCGGTAAACCACAGTGTCACAAAAGGCACACAACACAGCATGATCAGTGCATGTTTCTaGGGACCTCTCCACACCACG +
Preference number: 5 (lower is better)
Translates to: LPDVPVNHSVTKGTQHSMISACF*GPLHTT
Trigger: CGTGGTGTGGAGAGGTCCCAAGAAACATGCACTGAT...CATGCTGTGTTGTGTGCCTTTTGTGACACTGTGGTTTACCGGCACATCTGGTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR CAA 90 bp GGCTGGACGAAAGCCTATAGGCTAAAGGTTAAGGCTGCTATTATCTCAAGGAATCCGCTGGAGAAGACATaGGTGCACTCAGCGCAGTGT +
Preference number: 5 (lower is better)
Translates to: GWTKAYRLKVKAAIISRNPLEKT*VHSAQC
Trigger: ACACTGCGCTGAGTGCACCAATGTCTTCTCCAGCGG...ATTCCTTGAGATAATAGCAGCCTTAACCTTTAGCCTATAGGCTTTCGTCCAGCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR CAA 90 bp CTAATACTGCTTGTTCCAGACATGAAATGTAGGGGAATCAAGAGTCACCTCGCTCCGCTGGAGAAGACATaGGTGCACTCAGCGCAGTGT +
Preference number: 5 (lower is better)
Translates to: LILLVPDMKCRGIKSHLAPLEKT*VHSAQC
Trigger: ACACTGCGCTGAGTGCACCAATGTCTTCTCCAGCGG...AGCGAGGTGACTCTTGATTCCCCTACATTTCATGTCTGGAACAAGCAGTATTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR CAA 90 bp CTAGTGTCAGCCAAGGACATGGGGGCCTGCAGATCTCTGCATGGATGTAATCGCGAATATGCAGTGCTTTaGGGAAATTCCTGGATGAAG +
Preference number: 5 (lower is better)
Translates to: LVSAKDMGACRSLHGCNREYAVL*GNSWMK
Trigger: CTTCATCCAGGAATTTCCCAAAAGCACTGCATATTC...GCGATTACATCCATGCAGAGATCTGCAGGCCCCCATGTCCTTGGCTGACACTAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
CDS-3UTR CAA 90 bp GCGGTATGTTTAATAGCAGAGTTCTGTAAAGTTACCAGATGTGCCGGTAAACCAATCAGTGCATGTTTCTaGGGACCTCTCCACACCACG +
Preference number: 5 (lower is better)
Translates to: AVCLIAEFCKVTRCAGKPISACF*GPLHTT
Trigger: CGTGGTGTGGAGAGGTCCCAAGAAACATGCACTGAT...TGGTTTACCGGCACATCTGGTAACTTTACAGAACTCTGCTATTAAACATACCGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR CAA 90 bp ACGAAAGCCTATAGGCTAAAGGTTAAGGCTGCTATTATCTCAAGGAATCAGGACATCAGTGCATGTTTCTaGGGACCTCTCCACACCACG +
Preference number: 5 (lower is better)
Translates to: TKAYRLKVKAAIISRNQDISACF*GPLHTT
Trigger: CGTGGTGTGGAGAGGTCCCAAGAAACATGCACTGAT...GTCCTGATTCCTTGAGATAATAGCAGCCTTAACCTTTAGCCTATAGGCTTTCGT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
ENSMUST00000234968.2
CDS-3UTR CAA 90 bp TGTTTAATAGCAGAGTTCTGTAAAGTTACCAGATGTGCCGGTAAACCACAGTGTCAAGCTCCTGGTAAGTaGGGAATCCAGGGGGACAGA +
Preference number: 5 (lower is better)
Translates to: CLIAEFCKVTRCAGKPQCQAPGK*GIQGDR
Trigger: TCTGTCCCCCTGGATTCCCAACTTACCAGGAGCTTG...ACACTGTGGTTTACCGGCACATCTGGTAACTTTACAGAACTCTGCTATTAAACA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
CDS-3UTR CAA 90 bp ACCAGATGTGCCGGTAAACCACAGTGTCACAAAAGGCACACAACACAGCATGTGGAATATGCAGTGCTTTaGGGAAATTCCTGGATGAAG +
Preference number: 5 (lower is better)
Translates to: TRCAGKPQCHKRHTTQHVEYAVL*GNSWMK
Trigger: CTTCATCCAGGAATTTCCCAAAAGCACTGCATATTC...CACATGCTGTGTTGTGTGCCTTTTGTGACACTGTGGTTTACCGGCACATCTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
CDS-3UTR CAA 90 bp GTATGTTTAATAGCAGAGTTCTGTAAAGTTACCAGATGTGCCGGTAAACCACAGGAATATGCAGTGCTTTaGGGAAATTCCTGGATGAAG +
Preference number: 5 (lower is better)
Translates to: VCLIAEFCKVTRCAGKPQEYAVL*GNSWMK
Trigger: CTTCATCCAGGAATTTCCCAAAAGCACTGCATATTC...CTGTGGTTTACCGGCACATCTGGTAACTTTACAGAACTCTGCTATTAAACATAC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234597.2
ENSMUST00000234598.2
ENSMUST00000234928.2
CDS TCA 72 bp GATGTGTCGCACCCCGGCCAGGTTCCCGGGTTCTGGTaGGAAACAGGAGTTGGGGTGTCTGCACGCTCACCG +
Preference number: 6 (lower is better)
Translates to: DVSHPGQVPGFW*ETGVGVSARSP
Trigger: CGGTGAGCGTGCAGACACCCCAACTCCTGTTTCTCACCAGAACCCGGGAACCTGGCCGGGGTGCGACACATC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000234261.2
ENSMUST00000234579.2
CDS GCA 72 bp GACCGCACAGGTCCACATCTAGGATTCCCACCTTCTTaGCCTGGTGGCGCAGAGCCAGGGCCAACTCCGTGG +
Preference number: 6 (lower is better)
Translates to: DRTGPHLGFPPS*PGGAEPGPTPW
Trigger: CCACGGAGTTGGCCCTGGCTCTGCGCCACCAGGGCAAGAAGGTGGGAATCCTAGATGTGGACCTGTGCGGTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234489.2
ENSMUST00000234583.2
ENSMUST00000234968.2
CDS GCA 72 bp GCACGGCCTTGCCTTGTGCACGGAGCATGTGTGGTATaGTGGGACCGCACAGGTCCACATCTAGGATTCCCA +
Preference number: 6 (lower is better)
Translates to: ARPCLVHGACVV*WDRTGPHLGFP
Trigger: TGGGAATCCTAGATGTGGACCTGTGCGGTCCCAGCATACCACACATGCTCCGTGCACAAGGCAAGGCCGTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000044252.7
ENSMUST00000234489.2
ENSMUST00000234583.2
ENSMUST00000234598.2
ENSMUST00000234968.2
CDS CCA 72 bp CCTGGTGGCGCAGAGCCAGGGCCAACTCCGTGGAGATaGTGCTTTTCCCAACGCCACCCTTTCCAGAAAGAA +
Preference number: 6 (lower is better)
Translates to: PGGAEPGPTPWR*CFSQRHPFQKE
Trigger: TTCTTTCTGGAAAGGGTGGCGTTGGGAAAAGCACCATCTCCACGGAGTTGGCCCTGGCTCTGCGCCACCAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 9 transcripts:
ENSMUST00000044252.7
ENSMUST00000234261.2
ENSMUST00000234293.2
ENSMUST00000234352.2
ENSMUST00000234489.2
ENSMUST00000234579.2
ENSMUST00000234583.2
ENSMUST00000234968.2
ENSMUST00000235055.2
CDS CCA 72 bp CGGCCTTGCCTTGTGCACGGAGCATGTGTGGTATGCTaGGACCGCACAGGTCCACATCTAGGATTCCCACCT +
Preference number: 6 (lower is better)
Translates to: RPCLVHGACVVC*DRTGPHLGFPP
Trigger: AGGTGGGAATCCTAGATGTGGACCTGTGCGGTCCCAGCATACCACACATGCTCCGTGCACAAGGCAAGGCCG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000044252.7
ENSMUST00000234489.2
ENSMUST00000234583.2
ENSMUST00000234968.2
CDS CCA 72 bp ATGAAGTCACGCCCTTCCTCCAAGCTCCTGGTAAGTTaGGAATCCAGGGGGACAGAGCAGCGCAGTGTGGGC +
Preference number: 6 (lower is better)
Translates to: MKSRPSSKLLVS*ESRGTEQRSVG
Trigger: GCCCACACTGCGCTGCTCTGTCCCCCTGGATTCCCAACTTACCAGGAGCTTGGAGGAAGGGCGTGACTTCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000234598.2
CDS CAA 72 bp GATGAAGTCACGCCCTTCCTCCAAGCTCCTGGTAAGTaGGGAATCCAGGGGGACAGAGCAGCGCAGTGTGGG +
Preference number: 6 (lower is better)
Translates to: DEVTPFLQAPGK*GIQGDRAAQCG
Trigger: CCCACACTGCGCTGCTCTGTCCCCCTGGATTCCCAACTTACCAGGAGCTTGGAGGAAGGGCGTGACTTCATC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000234598.2
CDS CAA 90 bp TCAGTGCTGCAAAGACCCCAAAGCCCAGCAGTAATCCCATGTTTCTaGGGACCTCTCCACACCACGGCCTCATCAGGGTTTTCCAGCAGG +
Preference number: 6 (lower is better)
Translates to: SVLQRPQSPAVIPCF*GPLHTTASSGFSSR
Trigger: CCTGCTGGAAAACCCTGATGAGGCCGTGGTGTGGAGAGGTCCCAAGAAACATGGGATTACTGCTGGGCTTTGGGGTCTTTGCAGCACTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000234489.2
CDS CAA 90 bp AGGTCCCTGGAGGTGTGTCCACAACCAGATAATCCAGCATGTTTCTaGGGACCTCTCCACACCACGGCCTCATCAGGGTTTTCCAGCAGG +
Preference number: 6 (lower is better)
Translates to: RSLEVCPQPDNPACF*GPLHTTASSGFSSR
Trigger: CCTGCTGGAAAACCCTGATGAGGCCGTGGTGTGGAGAGGTCCCAAGAAACATGCTGGATTATCTGGTTGTGGACACACCTCCAGGGACCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234674.2
CDS CAA 72 bp CAAAGACCCCAAAGCCCAGCAGTAATCCCATGTTTCTaGGGACCTCTCCACACCACGGCCTCATCAGGGTTT +
Preference number: 6 (lower is better)
Translates to: QRPQSPAVIPCF*GPLHTTASSGF
Trigger: AAACCCTGATGAGGCCGTGGTGTGGAGAGGTCCCAAGAAACATGGGATTACTGCTGGGCTTTGGGGTCTTTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000234489.2
CDS CAA 72 bp GAGGTGTGTCCACAACCAGATAATCCAGCATGTTTCTaGGGACCTCTCCACACCACGGCCTCATCAGGGTTT +
Preference number: 6 (lower is better)
Translates to: EVCPQPDNPACF*GPLHTTASSGF
Trigger: AAACCCTGATGAGGCCGTGGTGTGGAGAGGTCCCAAGAAACATGCTGGATTATCTGGTTGTGGACACACCTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234674.2
CDS CCA 72 bp AGGTGTGTCCACAACCAGATAATCCAGCATGTTTCTTaGGACCTCTCCACACCACGGCCTCATCAGGGTTTT +
Preference number: 6 (lower is better)
Translates to: RCVHNQIIQHVS*DLSTPRPHQGF
Trigger: AAAACCCTGATGAGGCCGTGGTGTGGAGAGGTCCCAAGAAACATGCTGGATTATCTGGTTGTGGACACACCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000234674.2