Pregenerated sensors for NUBP1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000022503Ensembl transcript IDs: ENSMUST00000023146.5, ENSMUST00000140157.8
Found 106 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TCTGATGGCCCCCAGCCAAAGCACCCACACCGATCCCAGCATGACTaGAGACCTCCCAGAGCTGGAGACCCCAGTGTGGGCACAGGCAGT | + |
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Preference number: 1 (lower is better) Translates to: SDGPQPKHPHRSQHD*RPPRAGDPSVGTGS Trigger: ACTGCCTGTGCCCACACTGGGGTCTCCAGCTCTGGGAGGTCTCCAGTCATGCTGGGATCGGTGTGGGTGCTTTGGCTGGGGGCCATCAGA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| 3UTR GCA 90 bp | CAGGCCAGAGGCCTGAGCACCTGTGGGAAAGCAGCTCCTGACCTGTaGTCCAGGCCTAGGTGGCCTTTCCCAGTCCTCCAAGTTGACCCA | + |
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Preference number: 1 (lower is better) Translates to: QARGLSTCGKAAPDL*SRPRWPFPVLQVDP Trigger: TGGGTCAACTTGGAGGACTGGGAAAGGCCACCTAGGCCTGGAGCACAGGTCAGGAGCTGCTTTCCCACAGGTGCTCAGGCCTCTGGCCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| 3UTR TCA 90 bp | TGGCAGAAGCTGATCTCTTTCCGGACATCCTGGAGGGCCACCTCCTaGGGGGTGGTGAGGATCACTGCCCCATCAATGTGTGCCGCAGCC | + |
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Preference number: 1 (lower is better) Translates to: WQKLISFRTSWRATS*GVVRITAPSMCAAA Trigger: GGCTGCGGCACACATTGATGGGGCAGTGATCCTCACCACCCCTCAGGAGGTGGCCCTCCAGGATGTCCGGAAAGAGATCAGCTTCTGCCA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000140157.8 |
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| 3UTR CCA 90 bp | GTGGTGAGGATCACTGCCCCATCAATGTGTGCCGCAGCCAGGTACTaGACCACTGAGAGGTGTTCGTCAGACGTGCCAGGCGGGGTGTCT | + |
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Preference number: 1 (lower is better) Translates to: VVRITAPSMCAAARY*TTERCSSDVPGGVS Trigger: AGACACCCCGCCTGGCACGTCTGACGAACACCTCTCAGTGGTCCAGTACCTGGCTGCGGCACACATTGATGGGGCAGTGATCCTCACCAC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140157.8 |
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| 3UTR TCA 90 bp | TGTTGGGACAGTCATGGCTTCTCTTGCCTTGCAGGACTTCCCAGGTaGCTTCGAGAAGCCCAGGCTGGAAGGGCTGGACATCCACCGGCA | + |
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Preference number: 1 (lower is better) Translates to: CWDSHGFSCLAGLPR*LREAQAGRAGHPPA Trigger: TGCCGGTGGATGTCCAGCCCTTCCAGCCTGGGCTTCTCGAAGTCACCTGGGAAGTCCTGCAAGGCAAGAGAAGCCATGACTGTCCCAACA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| 3UTR TCA 90 bp | CCACTGAGAGGTGTTCGTCAGACGTGCCAGGCGGGGTGTCTACGATaGGGTAGTCCACGTCTCCCCAGTCTACATCACGGAGGAACTGCT | + |
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Preference number: 1 (lower is better) Translates to: PLRGVRQTCQAGCLR*GSPRLPSLHHGGTA Trigger: AGCAGTTCCTCCGTGATGTAGACTGGGGAGACGTGGACTACCTCATCGTAGACACCCCGCCTGGCACGTCTGACGAACACCTCTCAGTGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140157.8 |
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| 3UTR CCA 90 bp | CCAGCGGCACTTTGCCCAGAAGTGGAATCCTCAGATCCTGGCACATaGCCTCTGCACCCCCAGTCGTGGGAGGGAAGATCTGAGACTCTT | + |
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Preference number: 1 (lower is better) Translates to: PAALCPEVESSDPGT*PLHPQSWEGRSETL Trigger: AAGAGTCTCAGATCTTCCCTCCCACGACTGGGGGTGCAGAGGCCATGTGCCAGGATCTGAGGATTCCACTTCTGGGCAAAGTGCCGCTGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000140157.8 |
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| 3UTR CCA 90 bp | AGCACCTGTGGGAAAGCAGCTCCTGACCTGTGCTCCAGGCCTAGGTaGCCTTTCCCAGTCCTCCAAGTTGACCCAGAACAAGTCCAAGCT | + |
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Preference number: 1 (lower is better) Translates to: STCGKAAPDLCSRPR*PFPVLQVDPEQVQA Trigger: AGCTTGGACTTGTTCTGGGTCAACTTGGAGGACTGGGAAAGGCCACCTAGGCCTGGAGCACAGGTCAGGAGCTGCTTTCCCACAGGTGCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| 3UTR TCA 90 bp | TCCTGGCACATGGCCTCTGCACCCCCAGTCGTGGGAGGGAAGATCTaGGACTCTTTCTTGCACTTGGGGCAGATGAAACCGCTCATGTTT | + |
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Preference number: 1 (lower is better) Translates to: SWHMASAPPVVGGKI*DSFLHLGQMKPLMF Trigger: AAACATGAGCGGTTTCATCTGCCCCAAGTGCAAGAAAGAGTCTCAGATCTTCCCTCCCACGACTGGGGGTGCAGAGGCCATGTGCCAGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000140157.8 |
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| 3UTR GCA 90 bp | ACGAGGACAATTACATCTGTGCCTCAGACGTGCCAGGTGATGGTTTaGCTGGGACCCTGGGCAATACCGGATGTCTTGAAGGCACCGTCA | + |
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Preference number: 1 (lower is better) Translates to: TRTITSVPQTCQVMV*LGPWAIPDVLKAPS Trigger: TGACGGTGCCTTCAAGACATCCGGTATTGCCCAGGGTCCCAGGCAAACCATCACCTGGCACGTCTGAGGCACAGATGTAATTGTCCTCGT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| 3UTR GCA 90 bp | CACTTTGCCCAGAAGTGGAATCCTCAGATCCTGGCACATGGCCTCTaGACCCCCAGTCGTGGGAGGGAAGATCTGAGACTCTTTCTTGCA | + |
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Preference number: 1 (lower is better) Translates to: HFAQKWNPQILAHGL*TPSRGREDLRLFLA Trigger: TGCAAGAAAGAGTCTCAGATCTTCCCTCCCACGACTGGGGGTGCAGAGGCCATGTGCCAGGATCTGAGGATTCCACTTCTGGGCAAAGTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000140157.8 |
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| 3UTR CCA 90 bp | CCGCTCATGTTTTCTACCACACCAATGATGGGCAGCTTCACCTTGTaGCAGAAGCTGATCTCTTTCCGGACATCCTGGAGGGCCACCTCC | + |
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Preference number: 1 (lower is better) Translates to: PLMFSTTPMMGSFTL*QKLISFRTSWRATS Trigger: GGAGGTGGCCCTCCAGGATGTCCGGAAAGAGATCAGCTTCTGCCACAAGGTGAAGCTGCCCATCATTGGTGTGGTAGAAAACATGAGCGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140157.8 |
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| 3UTR TCA 90 bp | GATGGAGGATTCTTTTTGGCTACTTGTGGCTGTGGGTCTCCCCAGTaGGTCTGCTCTTTGTTGGGACAGTCATGGCTTCTCTTGCCTTGC | + |
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Preference number: 1 (lower is better) Translates to: DGGFFLATCGCGSPQ*VCSLLGQSWLLLPC Trigger: GCAAGGCAAGAGAAGCCATGACTGTCCCAACAAAGAGCAGACTCACTGGGGAGACCCACAGCCACAAGTAGCCAAAAAGAATCCTCCATC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| 3UTR CCA 90 bp | GGGATAGGTTCAAGGAGACATTTTTATTTTCTGATGAATGGCACCTaGATGCAGAGCGCCCGTACCTTTGATCTCGAGGAAATAGGCAGA | + |
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Preference number: 1 (lower is better) Translates to: GIGSRRHFYFLMNGT*MQSARTFDLEEIGR Trigger: TCTGCCTATTTCCTCGAGATCAAAGGTACGGGCGCTCTGCATCCAGGTGCCATTCATCAGAAAATAAAAATGTCTCCTTGAACCTATCCC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| 3UTR CCA 90 bp | ATTGTCTTAATAATTGCCAATTGTCAAGTTGTCAGAAATGAGGGATaGAGGATTCTTTTTGGCTACTTGTGGCTGTGGGTCTCCCCAGTG | + |
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Preference number: 1 (lower is better) Translates to: IVLIIANCQVVRNEG*RILFGYLWLWVSPV Trigger: CACTGGGGAGACCCACAGCCACAAGTAGCCAAAAAGAATCCTCCATCCCTCATTTCTGACAACTTGACAATTGGCAATTATTAAGACAAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| 3UTR-3UTR TCA 90 bp | GTCATGGCTTCTCTTGCCTTGCAGGACTTCCCAGGTGACTTCGAGAAGCCCAGGCTCAGACGTGCCAGGTaGTGGTTTGCCTGGGACCCT | + |
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Preference number: 2 (lower is better) Translates to: VMASLALQDFPGDFEKPRLRRAR*WFAWDP Trigger: AGGGTCCCAGGCAAACCATCACCTGGCACGTCTGAG...CCTGGGCTTCTCGAAGTCACCTGGGAAGTCCTGCAAGGCAAGAGAAGCCATGAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| 3UTR-3UTR CCA 90 bp | CTTGTGGCTGTGGGTCTCCCCAGTGAGTCTGCTCTTTGTTGGGACAGTCATGGCTCGAGAAGCCCAGGCTaGAAGGGCTGGACATCCACC | + |
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Preference number: 2 (lower is better) Translates to: LVAVGLPSESALCWDSHGSRSPG*KGWTST Trigger: GGTGGATGTCCAGCCCTTCCAGCCTGGGCTTCTCGA...GCCATGACTGTCCCAACAAAGAGCAGACTCACTGGGGAGACCCACAGCCACAAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| 3UTR-3UTR GCA 90 bp | GGCCTCTGCACCCCCAGTCGTGGGAGGGAAGATCTGAGACTCTTTCTTGCACTTTGCCCCATCAATGTGTaGCGCAGCCAGGTACTGGAC | + |
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Preference number: 2 (lower is better) Translates to: GLCTPSRGREDLRLFLALCPINV*RSQVLD Trigger: GTCCAGTACCTGGCTGCGGCACACATTGATGGGGCA...AAGTGCAAGAAAGAGTCTCAGATCTTCCCTCCCACGACTGGGGGTGCAGAGGCC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000140157.8 |
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| 3UTR CAA 90 bp | CCAGTGAGTCTGCTCTTTGTTGGGACAGTCATGGCTTCTCTTGCCTaGCAGGACTTCCCAGGTGACTTCGAGAAGCCCAGGCTGGAAGGG | + |
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Preference number: 2 (lower is better) Translates to: PVSLLFVGTVMASLA*QDFPGDFEKPRLEG Trigger: CCCTTCCAGCCTGGGCTTCTCGAAGTCACCTGGGAAGTCCTGCAAGGCAAGAGAAGCCATGACTGTCCCAACAAAGAGCAGACTCACTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| 3UTR-3UTR GCA 90 bp | CCCCTCTGTGTCTCCCTAGGCTTATCACATGAGGCAGAAACAGTTCCTGGGAGTCCACCTGTCCCCCATTaGCCAGGTGTCTGGACACGT | + |
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Preference number: 2 (lower is better) Translates to: PLCVSLGLSHEAETVPGSPPVPH*PGVWTR Trigger: ACGTGTCCAGACACCTGGGCAATGGGGGACAGGTGG...ACTCCCAGGAACTGTTTCTGCCTCATGTGATAAGCCTAGGGAGACACAGAGGGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| 3UTR-3UTR CCA 90 bp | GTCATGGCTTCTCTTGCCTTGCAGGACTTCCCAGGTGACTTCGAGAAGCCCAGGGGCACCGTCACCTCATaGGTGACTTACAGGCTTTGC | + |
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Preference number: 2 (lower is better) Translates to: VMASLALQDFPGDFEKPRGTVTS*VTYRLC Trigger: GCAAAGCCTGTAAGTCACCCATGAGGTGACGGTGCC...CCTGGGCTTCTCGAAGTCACCTGGGAAGTCCTGCAAGGCAAGAGAAGCCATGAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| 3UTR-3UTR CCA 90 bp | GAAACAGTTCCTGGGAGTCCTGTGACTCAGAGAGTTCCTAGTCCCTTGGATTCCTCTGGGGTTAGCAGGTaGCACTCGGTCCTGTTCCAC | + |
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Preference number: 2 (lower is better) Translates to: ETVPGSPVTQRVPSPLDSSGVSR*HSVLFH Trigger: GTGGAACAGGACCGAGTGCCACCTGCTAACCCCAGA...GGAATCCAAGGGACTAGGAACTCTCTGAGTCACAGGACTCCCAGGAACTGTTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| 3UTR CAA 90 bp | AAACCGCTCATGTTTTCTACCACACCAATGATGGGCAGCTTCACCTaGTGGCAGAAGCTGATCTCTTTCCGGACATCCTGGAGGGCCACC | + |
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Preference number: 2 (lower is better) Translates to: KPLMFSTTPMMGSFT*WQKLISFRTSWRAT Trigger: GGTGGCCCTCCAGGATGTCCGGAAAGAGATCAGCTTCTGCCACAAGGTGAAGCTGCCCATCATTGGTGTGGTAGAAAACATGAGCGGTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140157.8 |
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| 3UTR-3UTR TCA 90 bp | GCACATGGCCTCTGCACCCCCAGTCGTGGGAGGGAAGATCTGAGACTCTTTCTTTTTCTACCACACCAATaGTGGGCAGCTTCACCTTGT | + |
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Preference number: 2 (lower is better) Translates to: AHGLCTPSRGREDLRLFLFLPHQ*WAASPC Trigger: ACAAGGTGAAGCTGCCCATCATTGGTGTGGTAGAAA...AAGAAAGAGTCTCAGATCTTCCCTCCCACGACTGGGGGTGCAGAGGCCATGTGC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000140157.8 |
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| 3UTR-3UTR TCA 90 bp | CTTGTGGCTGTGGGTCTCCCCAGTGAGTCTGCTCTTTGTTGGGACAGTCATGGCCAGTGTCTTAATGAGTaGCTTCAAATCCTGTCAGCA | + |
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Preference number: 2 (lower is better) Translates to: LVAVGLPSESALCWDSHGQCLNE*LQILSA Trigger: TGCTGACAGGATTTGAAGTCACTCATTAAGACACTG...GCCATGACTGTCCCAACAAAGAGCAGACTCACTGGGGAGACCCACAGCCACAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| 3UTR-3UTR CCA 90 bp | GCCAATTGTCAAGTTGTCAGAAATGAGGGATGGAGGATTCTTTTTGGCTACTTGGAGACCTCCCAGAGCTaGAGACCCCAGTGTGGGCAC | + |
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Preference number: 2 (lower is better) Translates to: ANCQVVRNEGWRILFGYLETSQS*RPQCGH Trigger: GTGCCCACACTGGGGTCTCCAGCTCTGGGAGGTCTC...CAAGTAGCCAAAAAGAATCCTCCATCCCTCATTTCTGACAACTTGACAATTGGC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| 3UTR-3UTR CCA 90 bp | TTTTATTTTCTGATGAATGGCACCTGGATGCAGAGCGCCCGTACCTTTGATCTCAGCATCTGGTGGCTATaGTACCACCTGTCCCCCATT | + |
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Preference number: 2 (lower is better) Translates to: FYFLMNGTWMQSARTFDLSIWWL*YHLSPI Trigger: AATGGGGGACAGGTGGTACCATAGCCACCAGATGCT...GAGATCAAAGGTACGGGCGCTCTGCATCCAGGTGCCATTCATCAGAAAATAAAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| 3UTR-3UTR CCA 90 bp | ATTGTCAAGTTGTCAGAAATGAGGGATGGAGGATTCTTTTTGGCTACTTGTGGCTGCTCCAGGCCTAGGTaGCCTTTCCCAGTCCTCCAA | + |
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Preference number: 2 (lower is better) Translates to: IVKLSEMRDGGFFLATCGCSRPR*PFPVLQ Trigger: TTGGAGGACTGGGAAAGGCCACCTAGGCCTGGAGCA...GCCACAAGTAGCCAAAAAGAATCCTCCATCCCTCATTTCTGACAACTTGACAAT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| 3UTR-3UTR CCA 90 bp | CAAGTTGTCAGAAATGAGGGATGGAGGATTCTTTTTGGCTACTTGTGGCTGTGGTTGTTGGGACAGTCATaGCTTCTCTTGCCTTGCAGG | + |
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Preference number: 2 (lower is better) Translates to: QVVRNEGWRILFGYLWLWLLGQS*LLLPCR Trigger: CCTGCAAGGCAAGAGAAGCCATGACTGTCCCAACAA...CCACAGCCACAAGTAGCCAAAAAGAATCCTCCATCCCTCATTTCTGACAACTTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| 3UTR-3UTR CCA 90 bp | GCCAATTGTCAAGTTGTCAGAAATGAGGGATGGAGGATTCTTTTTGGCTACTTGGGACCCATCGAGCTTTaGAAAGGTCACATCTGCCCT | + |
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Preference number: 2 (lower is better) Translates to: ANCQVVRNEGWRILFGYLGPIEL*KGHICP Trigger: AGGGCAGATGTGACCTTTCCAAAGCTCGATGGGTCC...CAAGTAGCCAAAAAGAATCCTCCATCCCTCATTTCTGACAACTTGACAATTGGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| 3UTR-3UTR CCA 90 bp | GCCAATTGTCAAGTTGTCAGAAATGAGGGATGGAGGATTCTTTTTGGCTACTTGCACACCACAGTACAGTaGAAATCTGGAATGAATTCC | + |
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Preference number: 2 (lower is better) Translates to: ANCQVVRNEGWRILFGYLHTTVQ*KSGMNS Trigger: GGAATTCATTCCAGATTTCCACTGTACTGTGGTGTG...CAAGTAGCCAAAAAGAATCCTCCATCCCTCATTTCTGACAACTTGACAATTGGC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| 3UTR TCA 72 bp | CCAGGCTGGAAGGGCTGGACATCCACCGGCACTAGGTaGGCAGCACGTGCAGGCCAGAGGCCTGAGCACCTG | + |
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Preference number: 3 (lower is better) Translates to: PGWKGWTSTGTR*AARAGQRPEHL Trigger: CAGGTGCTCAGGCCTCTGGCCTGCACGTGCTGCTCACCTAGTGCCGGTGGATGTCCAGCCCTTCCAGCCTGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| 3UTR CCA 72 bp | CCCCAGCCAAAGCACCCACACCGATCCCAGCATGACTaGAGACCTCCCAGAGCTGGAGACCCCAGTGTGGGC | + |
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Preference number: 3 (lower is better) Translates to: PQPKHPHRSQHD*RPPRAGDPSVG Trigger: GCCCACACTGGGGTCTCCAGCTCTGGGAGGTCTCCAGTCATGCTGGGATCGGTGTGGGTGCTTTGGCTGGGG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| 3UTR TCA 72 bp | TCCGGACATCCTGGAGGGCCACCTCCTGAGGGGTGGTaGGGATCACTGCCCCATCAATGTGTGCCGCAGCCA | + |
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Preference number: 3 (lower is better) Translates to: SGHPGGPPPEGW*GSLPHQCVPQP Trigger: TGGCTGCGGCACACATTGATGGGGCAGTGATCCTCACCACCCCTCAGGAGGTGGCCCTCCAGGATGTCCGGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140157.8 |
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| 3UTR CCA 72 bp | ACCACCTGTCCCCCATTGCCCAGGTGTCTGGACACGTaGCCTGCCAACTCTGGGGTTAGCAGGTGGCACTCG | + |
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Preference number: 3 (lower is better) Translates to: TTCPPLPRCLDT*PANSGVSRWHS Trigger: CGAGTGCCACCTGCTAACCCCAGAGTTGGCAGGCCACGTGTCCAGACACCTGGGCAATGGGGGACAGGTGGT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| 3UTR GCA 72 bp | GGCCTGAGCACCTGTGGGAAAGCAGCTCCTGACCTGTaGTCCAGGCCTAGGTGGCCTTTCCCAGTCCTCCAA | + |
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Preference number: 3 (lower is better) Translates to: GLSTCGKAAPDL*SRPRWPFPVLQ Trigger: TTGGAGGACTGGGAAAGGCCACCTAGGCCTGGAGCACAGGTCAGGAGCTGCTTTCCCACAGGTGCTCAGGCC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| 3UTR TCA 72 bp | ACCTCATGGGTGACTTACAGGCTTTGCCAGGGGCTCTaGTGGCCCCCAGCCAAAGCACCCACACCGATCCCA | + |
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Preference number: 3 (lower is better) Translates to: TSWVTYRLCQGL*WPPAKAPTPIP Trigger: TGGGATCGGTGTGGGTGCTTTGGCTGGGGGCCATCAGAGCCCCTGGCAAAGCCTGTAAGTCACCCATGAGGT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| 3UTR CCA 72 bp | GCTATGGTACCACCTGTCCCCCATTGCCCAGGTGTCTaGACACGTGGCCTGCCAACTCTGGGGTTAGCAGGT | + |
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Preference number: 3 (lower is better) Translates to: AMVPPVPHCPGV*TRGLPTLGLAG Trigger: ACCTGCTAACCCCAGAGTTGGCAGGCCACGTGTCCAGACACCTGGGCAATGGGGGACAGGTGGTACCATAGC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| 3UTR TCA 72 bp | GGTGTTCGTCAGACGTGCCAGGCGGGGTGTCTACGATaGGGTAGTCCACGTCTCCCCAGTCTACATCACGGA | + |
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Preference number: 3 (lower is better) Translates to: GVRQTCQAGCLR*GSPRLPSLHHG Trigger: TCCGTGATGTAGACTGGGGAGACGTGGACTACCTCATCGTAGACACCCCGCCTGGCACGTCTGACGAACACC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140157.8 |
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| 3UTR CCA 72 bp | CCTCAGACGTGCCAGGTGATGGTTTGCCTGGGACCCTaGGCAATACCGGATGTCTTGAAGGCACCGTCACCT | + |
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Preference number: 3 (lower is better) Translates to: PQTCQVMVCLGP*AIPDVLKAPSP Trigger: AGGTGACGGTGCCTTCAAGACATCCGGTATTGCCCAGGGTCCCAGGCAAACCATCACCTGGCACGTCTGAGG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| 3UTR CCA 72 bp | ATCACTGCCCCATCAATGTGTGCCGCAGCCAGGTACTaGACCACTGAGAGGTGTTCGTCAGACGTGCCAGGC | + |
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Preference number: 3 (lower is better) Translates to: ITAPSMCAAARY*TTERCSSDVPG Trigger: GCCTGGCACGTCTGACGAACACCTCTCAGTGGTCCAGTACCTGGCTGCGGCACACATTGATGGGGCAGTGAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140157.8 |
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| 3UTR TCA 72 bp | ATACCGGATGTCTTGAAGGCACCGTCACCTCATGGGTaGCTTACAGGCTTTGCCAGGGGCTCTGATGGCCCC | + |
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Preference number: 3 (lower is better) Translates to: IPDVLKAPSPHG*LTGFARGSDGP Trigger: GGGGCCATCAGAGCCCCTGGCAAAGCCTGTAAGTCACCCATGAGGTGACGGTGCCTTCAAGACATCCGGTAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| 3UTR TCA 72 bp | CTGATCTCTTTCCGGACATCCTGGAGGGCCACCTCCTaGGGGGTGGTGAGGATCACTGCCCCATCAATGTGT | + |
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Preference number: 3 (lower is better) Translates to: LISFRTSWRATS*GVVRITAPSMC Trigger: ACACATTGATGGGGCAGTGATCCTCACCACCCCTCAGGAGGTGGCCCTCCAGGATGTCCGGAAAGAGATCAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000140157.8 |
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| 3UTR GCA 72 bp | CAGAAGTGGAATCCTCAGATCCTGGCACATGGCCTCTaGACCCCCAGTCGTGGGAGGGAAGATCTGAGACTC | + |
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Preference number: 3 (lower is better) Translates to: QKWNPQILAHGL*TPSRGREDLRL Trigger: GAGTCTCAGATCTTCCCTCCCACGACTGGGGGTGCAGAGGCCATGTGCCAGGATCTGAGGATTCCACTTCTG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000140157.8 |
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| 3UTR CCA 72 bp | CTTTGCCCAGAAGTGGAATCCTCAGATCCTGGCACATaGCCTCTGCACCCCCAGTCGTGGGAGGGAAGATCT | + |
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Preference number: 3 (lower is better) Translates to: LCPEVESSDPGT*PLHPQSWEGRS Trigger: AGATCTTCCCTCCCACGACTGGGGGTGCAGAGGCCATGTGCCAGGATCTGAGGATTCCACTTCTGGGCAAAG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000140157.8 |
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| 3UTR TCA 72 bp | CGAGGACAATTACATCTGTGCCTCAGACGTGCCAGGTaGTGGTTTGCCTGGGACCCTGGGCAATACCGGATG | + |
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Preference number: 3 (lower is better) Translates to: RGQLHLCLRRAR*WFAWDPGQYRM Trigger: CATCCGGTATTGCCCAGGGTCCCAGGCAAACCATCACCTGGCACGTCTGAGGCACAGATGTAATTGTCCTCG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| 3UTR TCA 72 bp | AGTCATGGCTTCTCTTGCCTTGCAGGACTTCCCAGGTaGCTTCGAGAAGCCCAGGCTGGAAGGGCTGGACAT | + |
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Preference number: 3 (lower is better) Translates to: SHGFSCLAGLPR*LREAQAGRAGH Trigger: ATGTCCAGCCCTTCCAGCCTGGGCTTCTCGAAGTCACCTGGGAAGTCCTGCAAGGCAAGAGAAGCCATGACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| 3UTR TCA 72 bp | ATGGCCTCTGCACCCCCAGTCGTGGGAGGGAAGATCTaGGACTCTTTCTTGCACTTGGGGCAGATGAAACCG | + |
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Preference number: 3 (lower is better) Translates to: MASAPPVVGGKI*DSFLHLGQMKP Trigger: CGGTTTCATCTGCCCCAAGTGCAAGAAAGAGTCTCAGATCTTCCCTCCCACGACTGGGGGTGCAGAGGCCAT 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000140157.8 |
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| 3UTR-3UTR CAA 90 bp | GTCATGGCTTCTCTTGCCTTGCAGGACTTCCCAGGTGACTTCGAGAAGCCCAGGGCAATACCGGATGTCTaGAAGGCACCGTCACCTCAT | + |
|
Preference number: 3 (lower is better) Translates to: VMASLALQDFPGDFEKPRAIPDV*KAPSPH Trigger: ATGAGGTGACGGTGCCTTCAAGACATCCGGTATTGC...CCTGGGCTTCTCGAAGTCACCTGGGAAGTCCTGCAAGGCAAGAGAAGCCATGAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| 3UTR GCA 72 bp | CGGATCACGAGGACAATTACATCTGTGCCTCAGACGTaGCAGGTGATGGTTTGCCTGGGACCCTGGGCAATA | + |
|
Preference number: 3 (lower is better) Translates to: RITRTITSVPQT*QVMVCLGPWAI Trigger: TATTGCCCAGGGTCCCAGGCAAACCATCACCTGGCACGTCTGAGGCACAGATGTAATTGTCCTCGTGATCCG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| 3UTR GCA 72 bp | TGCTCTTTGTTGGGACAGTCATGGCTTCTCTTGCCTTaGAGGACTTCCCAGGTGACTTCGAGAAGCCCAGGC | + |
|
Preference number: 3 (lower is better) Translates to: CSLLGQSWLLLP*RTSQVTSRSPG Trigger: GCCTGGGCTTCTCGAAGTCACCTGGGAAGTCCTGCAAGGCAAGAGAAGCCATGACTGTCCCAACAAAGAGCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| 3UTR CCA 72 bp | GTGGCTGTGGGTCTCCCCAGTGAGTCTGCTCTTTGTTaGGACAGTCATGGCTTCTCTTGCCTTGCAGGACTT | + |
|
Preference number: 3 (lower is better) Translates to: VAVGLPSESALC*DSHGFSCLAGL Trigger: AAGTCCTGCAAGGCAAGAGAAGCCATGACTGTCCCAACAAAGAGCAGACTCACTGGGGAGACCCACAGCCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| 3UTR GCA 72 bp | ATTACATCTGTGCCTCAGACGTGCCAGGTGATGGTTTaGCTGGGACCCTGGGCAATACCGGATGTCTTGAAG | + |
|
Preference number: 3 (lower is better) Translates to: ITSVPQTCQVMV*LGPWAIPDVLK Trigger: CTTCAAGACATCCGGTATTGCCCAGGGTCCCAGGCAAACCATCACCTGGCACGTCTGAGGCACAGATGTAAT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| 3UTR CCA 72 bp | GAGGGATGGAGGATTCTTTTTGGCTACTTGTGGCTGTaGGTCTCCCCAGTGAGTCTGCTCTTTGTTGGGACA | + |
|
Preference number: 3 (lower is better) Translates to: EGWRILFGYLWL*VSPVSLLFVGT Trigger: TGTCCCAACAAAGAGCAGACTCACTGGGGAGACCCACAGCCACAAGTAGCCAAAAAGAATCCTCCATCCCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| 3UTR-3UTR CAA 90 bp | TCCAGGAAGCAGGCCCTAAGGGATAGGTTCAAGGAGACATTTTTATTTTCTGATACCACCTGTCCCCCATaGCCCAGGTGTCTGGACACG | + |
|
Preference number: 3 (lower is better) Translates to: SRKQALRDRFKETFLFSDTTCPP*PRCLDT Trigger: CGTGTCCAGACACCTGGGCAATGGGGGACAGGTGGT...ATCAGAAAATAAAAATGTCTCCTTGAACCTATCCCTTAGGGCCTGCTTCCTGGA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| 3UTR CCA 72 bp | GGGCTGCCCATATTCCAGTGTCACACCACAGTACAGTaGAAATCTGGAATGAATTCCCTCAGCAGCTCTCAG | + |
|
Preference number: 3 (lower is better) Translates to: GLPIFQCHTTVQ*KSGMNSLSSSQ Trigger: CTGAGAGCTGCTGAGGGAATTCATTCCAGATTTCCACTGTACTGTGGTGTGACACTGGAATATGGGCAGCCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| 3UTR CCA 72 bp | TTTTCTACCACACCAATGATGGGCAGCTTCACCTTGTaGCAGAAGCTGATCTCTTTCCGGACATCCTGGAGG | + |
|
Preference number: 3 (lower is better) Translates to: FSTTPMMGSFTL*QKLISFRTSWR Trigger: CCTCCAGGATGTCCGGAAAGAGATCAGCTTCTGCCACAAGGTGAAGCTGCCCATCATTGGTGTGGTAGAAAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140157.8 |
||
| 3UTR-3UTR CAA 90 bp | CAAGTTGTCAGAAATGAGGGATGGAGGATTCTTTTTGGCTACTTGTGGCTGTGGCAGTCATGGCTTCTCTaGCCTTGCAGGACTTCCCAG | + |
|
Preference number: 3 (lower is better) Translates to: QVVRNEGWRILFGYLWLWQSWLL*PCRTSQ Trigger: CTGGGAAGTCCTGCAAGGCAAGAGAAGCCATGACTG...CCACAGCCACAAGTAGCCAAAAAGAATCCTCCATCCCTCATTTCTGACAACTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| 3UTR TCA 72 bp | TATCACATGAGGCAGAAACAGTTCCTGGGAGTCCTGTaGCTCAGAGAGTTCCTAGTCCCTTGGATTCCAGGA | + |
|
Preference number: 3 (lower is better) Translates to: YHMRQKQFLGVL*LREFLVPWIPG Trigger: TCCTGGAATCCAAGGGACTAGGAACTCTCTGAGTCACAGGACTCCCAGGAACTGTTTCTGCCTCATGTGATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| 3UTR CCA 72 bp | AGAAATGAGGGATGGAGGATTCTTTTTGGCTACTTGTaGCTGTGGGTCTCCCCAGTGAGTCTGCTCTTTGTT | + |
|
Preference number: 3 (lower is better) Translates to: RNEGWRILFGYL*LWVSPVSLLFV Trigger: AACAAAGAGCAGACTCACTGGGGAGACCCACAGCCACAAGTAGCCAAAAAGAATCCTCCATCCCTCATTTCT 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| 3UTR CCA 72 bp | CATATTCCAGTGTCACACCACAGTACAGTGGAAATCTaGAATGAATTCCCTCAGCAGCTCTCAGTTCTACGT | + |
|
Preference number: 3 (lower is better) Translates to: HIPVSHHSTVEI*NEFPQQLSVLR Trigger: ACGTAGAACTGAGAGCTGCTGAGGGAATTCATTCCAGATTTCCACTGTACTGTGGTGTGACACTGGAATATG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| 3UTR CCA 72 bp | ATAATTGCCAATTGTCAAGTTGTCAGAAATGAGGGATaGAGGATTCTTTTTGGCTACTTGTGGCTGTGGGTC | + |
|
Preference number: 3 (lower is better) Translates to: IIANCQVVRNEG*RILFGYLWLWV Trigger: GACCCACAGCCACAAGTAGCCAAAAAGAATCCTCCATCCCTCATTTCTGACAACTTGACAATTGGCAATTAT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| CDS-3UTR GCA 90 bp | GGCCTCTGCACCCCCAGTCGTGGGAGGGAAGATCTGAGACTCTTTCTTGCACTTAGCGCCGGCTCCGGATaGGCACAGCCTCTGGTTGGG | + |
|
Preference number: 4 (lower is better) Translates to: GLCTPSRGREDLRLFLALSAGSG*AQPLVG Trigger: CCCAACCAGAGGCTGTGCGCATCCGGAGCCGGCGCT...AAGTGCAAGAAAGAGTCTCAGATCTTCCCTCCCACGACTGGGGGTGCAGAGGCC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000140157.8 |
||
| CDS-3UTR GCA 90 bp | GCACCTGTGGGAAAGCAGCTCCTGACCTGTGCTCCAGGCCTAGGTGGCCTTTCCGCCGTGGGCGAGGTGTaGACTGAACGTGCTTTTCCC | + |
|
Preference number: 4 (lower is better) Translates to: APVGKQLLTCAPGLGGLSAVGEV*TERAFP Trigger: GGGAAAAGCACGTTCAGTGCACACCTCGCCCACGGC...GGAAAGGCCACCTAGGCCTGGAGCACAGGTCAGGAGCTGCTTTCCCACAGGTGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| CDS-3UTR GCA 90 bp | GAATCCTCAGATCCTGGCACATGGCCTCTGCACCCCCAGTCGTGGGAGGGAAGAGCCGTGGGCGAGGTGTaGACTGAACGTGCTTTTCCC | + |
|
Preference number: 4 (lower is better) Translates to: ESSDPGTWPLHPQSWEGRAVGEV*TERAFP Trigger: GGGAAAAGCACGTTCAGTGCACACCTCGCCCACGGC...TCTTCCCTCCCACGACTGGGGGTGCAGAGGCCATGTGCCAGGATCTGAGGATTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000140157.8 |
||
| CDS-3UTR TCA 90 bp | GCACCTGTGGGAAAGCAGCTCCTGACCTGTGCTCCAGGCCTAGGTGGCCTTTCCCTCCTTCTAAGCCCATaGTCTTGGGAATCGATGGCC | + |
|
Preference number: 4 (lower is better) Translates to: APVGKQLLTCAPGLGGLSLLLSP*SWESMA Trigger: GGCCATCGATTCCCAAGATCATGGGCTTAGAAGGAG...GGAAAGGCCACCTAGGCCTGGAGCACAGGTCAGGAGCTGCTTTCCCACAGGTGC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| CDS-3UTR TCA 90 bp | CCTCAGATCCTGGCACATGGCCTCTGCACCCCCAGTCGTGGGAGGGAAGATCTGCTCCTTCTAAGCCCATaGTCTTGGGAATCGATGGCC | + |
|
Preference number: 4 (lower is better) Translates to: PQILAHGLCTPSRGREDLLLLSP*SWESMA Trigger: GGCCATCGATTCCCAAGATCATGGGCTTAGAAGGAG...CAGATCTTCCCTCCCACGACTGGGGGTGCAGAGGCCATGTGCCAGGATCTGAGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000140157.8 |
||
| CDS-3UTR CCA 90 bp | GTCATGGCTTCTCTTGCCTTGCAGGACTTCCCAGGTGACTTCGAGAAGCCCAGGGCCGCAGCCAGGTACTaGACCACTGAGAGGTGTTCG | + |
|
Preference number: 4 (lower is better) Translates to: VMASLALQDFPGDFEKPRAAARY*TTERCS Trigger: CGAACACCTCTCAGTGGTCCAGTACCTGGCTGCGGC...CCTGGGCTTCTCGAAGTCACCTGGGAAGTCCTGCAAGGCAAGAGAAGCCATGAC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| CDS-3UTR CCA 90 bp | CCCAGGTGTCTGGACACGTGGCCTGCCAACTCTGGGGTTAGCAGGTGGCACTCGTTCTGTAGGCTGCTGTaGCTGGTGAATCTGGAGCTT | + |
|
Preference number: 4 (lower is better) Translates to: PRCLDTWPANSGVSRWHSFCRLL*LVNLEL Trigger: AAGCTCCAGATTCACCAGCCACAGCAGCCTACAGAA...CGAGTGCCACCTGCTAACCCCAGAGTTGGCAGGCCACGTGTCCAGACACCTGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| CDS-3UTR GCA 90 bp | GTCATGGCTTCTCTTGCCTTGCAGGACTTCCCAGGTGACTTCGAGAAGCCCAGGTGCCCCATCAATGTGTaGCGCAGCCAGGTACTGGAC | + |
|
Preference number: 4 (lower is better) Translates to: VMASLALQDFPGDFEKPRCPINV*RSQVLD Trigger: GTCCAGTACCTGGCTGCGGCACACATTGATGGGGCA...CCTGGGCTTCTCGAAGTCACCTGGGAAGTCCTGCAAGGCAAGAGAAGCCATGAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| CDS-3UTR TCA 90 bp | GAATCCTCAGATCCTGGCACATGGCCTCTGCACCCCCAGTCGTGGGAGGGAAGATCTTCATCTTCTCTCTaGTTTCCTCCACGGCGGGAT | + |
|
Preference number: 4 (lower is better) Translates to: ESSDPGTWPLHPQSWEGRSSSSL*FPPRRD Trigger: ATCCCGCCGTGGAGGAAATCAGAGAGAAGATGAAGA...TCTTCCCTCCCACGACTGGGGGTGCAGAGGCCATGTGCCAGGATCTGAGGATTC 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000140157.8 |
||
| CDS-3UTR GCA 90 bp | CAAGTTGTCAGAAATGAGGGATGGAGGATTCTTTTTGGCTACTTGTGGCTGTGGAGCGCCGGCTCCGGATaGGCACAGCCTCTGGTTGGG | + |
|
Preference number: 4 (lower is better) Translates to: QVVRNEGWRILFGYLWLWSAGSG*AQPLVG Trigger: CCCAACCAGAGGCTGTGCGCATCCGGAGCCGGCGCT...CCACAGCCACAAGTAGCCAAAAAGAATCCTCCATCCCTCATTTCTGACAACTTG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| CDS-3UTR CCA 90 bp | GCACCTGTGGGAAAGCAGCTCCTGACCTGTGCTCCAGGCCTAGGTGGCCTTTCCCATACCATTTTTCTTTaGTCCCCTCCAGATGACAGC | + |
|
Preference number: 4 (lower is better) Translates to: APVGKQLLTCAPGLGGLSHTIFL*SPPDDS Trigger: GCTGTCATCTGGAGGGGACCAAAGAAAAATGGTATG...GGAAAGGCCACCTAGGCCTGGAGCACAGGTCAGGAGCTGCTTTCCCACAGGTGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| 3UTR CAA 72 bp | GCTCCAGGCCTAGGTGGCCTTTCCCAGTCCTCCAAGTaGACCCAGAACAAGTCCAAGCTAGAACCCCGATAT | + |
|
Preference number: 4 (lower is better) Translates to: APGLGGLSQSSK*TQNKSKLEPRY Trigger: ATATCGGGGTTCTAGCTTGGACTTGTTCTGGGTCAACTTGGAGGACTGGGAAAGGCCACCTAGGCCTGGAGC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| 3UTR CAA 72 bp | CTGCTCTTTGTTGGGACAGTCATGGCTTCTCTTGCCTaGCAGGACTTCCCAGGTGACTTCGAGAAGCCCAGG | + |
|
Preference number: 4 (lower is better) Translates to: LLFVGTVMASLA*QDFPGDFEKPR Trigger: CCTGGGCTTCTCGAAGTCACCTGGGAAGTCCTGCAAGGCAAGAGAAGCCATGACTGTCCCAACAAAGAGCAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| CDS-3UTR TCA 90 bp | GAAACAGTTCCTGGGAGTCCTGTGACTCAGAGAGTTCCTAGTCCCTTGGATTCCTTGGTCCCCTCCAGATaGCAGCATCATCTGGGCTGC | + |
|
Preference number: 4 (lower is better) Translates to: ETVPGSPVTQRVPSPLDSLVPSR*QHHLGC Trigger: GCAGCCCAGATGATGCTGTCATCTGGAGGGGACCAA...GGAATCCAAGGGACTAGGAACTCTCTGAGTCACAGGACTCCCAGGAACTGTTTC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| CDS-3UTR TCA 90 bp | GCACCTGTGGGAAAGCAGCTCCTGACCTGTGCTCCAGGCCTAGGTGGCCTTTCCCACGGAGGAACTGCTTaGTCATACCATTTTTCTTTG | + |
|
Preference number: 4 (lower is better) Translates to: APVGKQLLTCAPGLGGLSHGGTA*SYHFSL Trigger: CAAAGAAAAATGGTATGATCAAGCAGTTCCTCCGTG...GGAAAGGCCACCTAGGCCTGGAGCACAGGTCAGGAGCTGCTTTCCCACAGGTGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| CDS-3UTR CCA 90 bp | CGGGGTGTCTACGATGAGGTAGTCCACGTCTCCCCAGTCTACATCACGGAGGAAGATCTTGGGAATCGATaGCCCACAGATATCGATGTC | + |
|
Preference number: 4 (lower is better) Translates to: RGVYDEVVHVSPVYITEEDLGNR*PTDIDV Trigger: GACATCGATATCTGTGGGCCATCGATTCCCAAGATC...TTCCTCCGTGATGTAGACTGGGGAGACGTGGACTACCTCATCGTAGACACCCCG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000140157.8 |
||
| CDS-3UTR CCA 90 bp | GAAATCTGGAATGAATTCCCTCAGCAGCTCTCAGTTCTACGTCTTAGTCCCGGATCAGATCCTGGCACATaGCCTCTGCACCCCCAGTCG | + |
|
Preference number: 4 (lower is better) Translates to: EIWNEFPQQLSVLRLSPGSDPGT*PLHPQS Trigger: CGACTGGGGGTGCAGAGGCCATGTGCCAGGATCTGA...TCCGGGACTAAGACGTAGAACTGAGAGCTGCTGAGGGAATTCATTCCAGATTTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| CDS-3UTR TCA 90 bp | CCCCTCTGTGTCTCCCTAGGCTTATCACATGAGGCAGAAACAGTTCCTGGGAGTTCTTCATCTTCTCTCTaGTTTCCTCCACGGCGGGAT | + |
|
Preference number: 4 (lower is better) Translates to: PLCVSLGLSHEAETVPGSSSSSL*FPPRRD Trigger: ATCCCGCCGTGGAGGAAATCAGAGAGAAGATGAAGA...ACTCCCAGGAACTGTTTCTGCCTCATGTGATAAGCCTAGGGAGACACAGAGGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| CDS-3UTR CCA 90 bp | GAAACAGTTCCTGGGAGTCCTGTGACTCAGAGAGTTCCTAGTCCCTTGGATTCCGGCAGCTTCACCTTGTaGCAGAAGCTGATCTCTTTC | + |
|
Preference number: 4 (lower is better) Translates to: ETVPGSPVTQRVPSPLDSGSFTL*QKLISF Trigger: GAAAGAGATCAGCTTCTGCCACAAGGTGAAGCTGCC...GGAATCCAAGGGACTAGGAACTCTCTGAGTCACAGGACTCCCAGGAACTGTTTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| CDS-3UTR TCA 90 bp | CAAGTTGTCAGAAATGAGGGATGGAGGATTCTTTTTGGCTACTTGTGGCTGTGGGGCTGCTGTGGCTGGTaGATCTGGAGCTTCGACAAA | + |
|
Preference number: 4 (lower is better) Translates to: QVVRNEGWRILFGYLWLWGCCGW*IWSFDK Trigger: TTTGTCGAAGCTCCAGATTCACCAGCCACAGCAGCC...CCACAGCCACAAGTAGCCAAAAAGAATCCTCCATCCCTCATTTCTGACAACTTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| 3UTR CAA 72 bp | ATGTTTTCTACCACACCAATGATGGGCAGCTTCACCTaGTGGCAGAAGCTGATCTCTTTCCGGACATCCTGG | + |
|
Preference number: 4 (lower is better) Translates to: MFSTTPMMGSFT*WQKLISFRTSW Trigger: CCAGGATGTCCGGAAAGAGATCAGCTTCTGCCACAAGGTGAAGCTGCCCATCATTGGTGTGGTAGAAAACAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000140157.8 |
||
| CDS-3UTR TCA 90 bp | CCCCTCTGTGTCTCCCTAGGCTTATCACATGAGGCAGAAACAGTTCCTGGGAGTGAGGGTCTCAGCATGTaGCTGATGAGAATTACAAAA | + |
|
Preference number: 4 (lower is better) Translates to: PLCVSLGLSHEAETVPGSEGLSM*LMRITK Trigger: TTTTGTAATTCTCATCAGTCACATGCTGAGACCCTC...ACTCCCAGGAACTGTTTCTGCCTCATGTGATAAGCCTAGGGAGACACAGAGGGG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| CDS-3UTR TCA 90 bp | ATTGTCAAGTTGTCAGAAATGAGGGATGGAGGATTCTTTTTGGCTACTTGTGGCAAGCAGGAAGCCCACTaGCATCACCCCCAGATTGTC | + |
|
Preference number: 4 (lower is better) Translates to: IVKLSEMRDGGFFLATCGKQEAH*HHPQIV Trigger: GACAATCTGGGGGTGATGTCAGTGGGCTTCCTGCTT...GCCACAAGTAGCCAAAAAGAATCCTCCATCCCTCATTTCTGACAACTTGACAAT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| CDS-3UTR TCA 90 bp | GAAATCTGGAATGAATTCCCTCAGCAGCTCTCAGTTCTACGTCTTAGTCCCGGATTTCTACCACACCAATaGTGGGCAGCTTCACCTTGT | + |
|
Preference number: 4 (lower is better) Translates to: EIWNEFPQQLSVLRLSPGFLPHQ*WAASPC Trigger: ACAAGGTGAAGCTGCCCATCATTGGTGTGGTAGAAA...TCCGGGACTAAGACGTAGAACTGAGAGCTGCTGAGGGAATTCATTCCAGATTTC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| CDS-3UTR TCA 90 bp | TCCAGGAAGCAGGCCCTAAGGGATAGGTTCAAGGAGACATTTTTATTTTCTGATCCTTGTGGCAGAAGCTaGTCTCTTTCCGGACATCCT | + |
|
Preference number: 4 (lower is better) Translates to: SRKQALRDRFKETFLFSDPCGRS*SLSGHP Trigger: AGGATGTCCGGAAAGAGATCAGCTTCTGCCACAAGG...ATCAGAAAATAAAAATGTCTCCTTGAACCTATCCCTTAGGGCCTGCTTCCTGGA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| CDS-3UTR CCA 90 bp | TTTTATTTTCTGATGAATGGCACCTGGATGCAGAGCGCCCGTACCTTTGATCTCGATCTTGGGAATCGATaGCCCACAGATATCGATGTC | + |
|
Preference number: 4 (lower is better) Translates to: FYFLMNGTWMQSARTFDLDLGNR*PTDIDV Trigger: GACATCGATATCTGTGGGCCATCGATTCCCAAGATC...GAGATCAAAGGTACGGGCGCTCTGCATCCAGGTGCCATTCATCAGAAAATAAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| CDS TCA 90 bp | CAGACAGCACCAAGAGCTTGTGTCTCACCGTCTTCATCTTCTCTCTaGTTTCCTCCACGGCGGGATCCGGAGCAGCGCCGGCTCCGGATG | + |
|
Preference number: 5 (lower is better) Translates to: QTAPRACVSPSSSSL*FPPRRDPEQRRLRM Trigger: CATCCGGAGCCGGCGCTGCTCCGGATCCCGCCGTGGAGGAAATCAGAGAGAAGATGAAGACGGTGAGACACAAGCTCTTGGTGCTGTCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023146.5 ENSMUST00000140157.8 |
||
| CDS-3UTR CAA 90 bp | CAGGCCAGAGGCCTGAGCACCTGTGGGAAAGCAGCTCCTGACCTGTGCTCCAGGGACATCACCCCCAGATaGTCATCCACGTACACTGGA | + |
|
Preference number: 5 (lower is better) Translates to: QARGLSTCGKAAPDLCSRDITPR*SSTYTG Trigger: TCCAGTGTACGTGGATGACAATCTGGGGGTGATGTC...CCTGGAGCACAGGTCAGGAGCTGCTTTCCCACAGGTGCTCAGGCCTCTGGCCTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| CDS-3UTR CAA 90 bp | CAGGCCAGAGGCCTGAGCACCTGTGGGAAAGCAGCTCCTGACCTGTGCTCCAGGATGGGCAGCTTCACCTaGTGGCAGAAGCTGATCTCT | + |
|
Preference number: 5 (lower is better) Translates to: QARGLSTCGKAAPDLCSRMGSFT*WQKLIS Trigger: AGAGATCAGCTTCTGCCACAAGGTGAAGCTGCCCAT...CCTGGAGCACAGGTCAGGAGCTGCTTTCCCACAGGTGCTCAGGCCTCTGGCCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| CDS CCA 90 bp | ACAGCTCTTGCCTATGTGTGGATCCAGCGGCACTTTGCCCAGAAGTaGAATCCTCAGATCCTGGCACATGGCCTCTGCACCCCCAGTCGT | + |
|
Preference number: 5 (lower is better) Translates to: TALAYVWIQRHFAQK*NPQILAHGLCTPSR Trigger: ACGACTGGGGGTGCAGAGGCCATGTGCCAGGATCTGAGGATTCCACTTCTGGGCAAAGTGCCGCTGGATCCACACATAGGCAAGAGCTGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| CDS-3UTR CAA 90 bp | TCCTCAGATCCTGGCACATGGCCTCTGCACCCCCAGTCGTGGGAGGGAAGATCTTCTAAGCCCATGATCTaGGGAATCGATGGCCCACAG | + |
|
Preference number: 5 (lower is better) Translates to: SSDPGTWPLHPQSWEGRSSKPMI*GIDGPQ Trigger: CTGTGGGCCATCGATTCCCAAGATCATGGGCTTAGA...AGATCTTCCCTCCCACGACTGGGGGTGCAGAGGCCATGTGCCAGGATCTGAGGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000140157.8 |
||
| CDS TCA 90 bp | CCTCCAGATGACAGCATCATCTGGGCTGCTAAGCAGGAAGCCCACTaGCATCACCCCCAGATTGTCATCCACGTACACTGGAGACCAGCC | + |
|
Preference number: 5 (lower is better) Translates to: PPDDSIIWAAKQEAH*HHPQIVIHVHWRPA Trigger: GGCTGGTCTCCAGTGTACGTGGATGACAATCTGGGGGTGATGTCAGTGGGCTTCCTGCTTAGCAGCCCAGATGATGCTGTCATCTGGAGG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| CDS GCA 90 bp | GGCCTTTGTCACAGCTCTTGCCTATGTGTGGATCCAGCGGCACTTTaGCCAGAAGTGGAATCCTCAGATCCTGGCACATGGCCTCTGCAC | + |
|
Preference number: 5 (lower is better) Translates to: GLCHSSCLCVDPAAL*PEVESSDPGTWPLH Trigger: GTGCAGAGGCCATGTGCCAGGATCTGAGGATTCCACTTCTGGGCAAAGTGCCGCTGGATCCACACATAGGCAAGAGCTGTGACAAAGGCC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
||
| CDS-3UTR CAA 90 bp | CTTGTGGCTGTGGGTCTCCCCAGTGAGTCTGCTCTTTGTTGGGACAGTCATGGCTCTAAGCCCATGATCTaGGGAATCGATGGCCCACAG | + |
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Preference number: 5 (lower is better) Translates to: LVAVGLPSESALCWDSHGSKPMI*GIDGPQ Trigger: CTGTGGGCCATCGATTCCCAAGATCATGGGCTTAGA...GCCATGACTGTCCCAACAAAGAGCAGACTCACTGGGGAGACCCACAGCCACAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| CDS-3UTR CAA 90 bp | GAAACAGTTCCTGGGAGTCCTGTGACTCAGAGAGTTCCTAGTCCCTTGGATTCCCCTTTGTCACAGCTCTaGCCTATGTGTGGATCCAGC | + |
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Preference number: 5 (lower is better) Translates to: ETVPGSPVTQRVPSPLDSPLSQL*PMCGSS Trigger: GCTGGATCCACACATAGGCAAGAGCTGTGACAAAGG...GGAATCCAAGGGACTAGGAACTCTCTGAGTCACAGGACTCCCAGGAACTGTTTC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| CDS-3UTR CAA 90 bp | GTCATGGCTTCTCTTGCCTTGCAGGACTTCCCAGGTGACTTCGAGAAGCCCAGGTCACGGAGGAACTGCTaGATCATACCATTTTTCTTT | + |
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Preference number: 5 (lower is better) Translates to: VMASLALQDFPGDFEKPRSRRNC*IIPFFF Trigger: AAAGAAAAATGGTATGATCAAGCAGTTCCTCCGTGA...CCTGGGCTTCTCGAAGTCACCTGGGAAGTCCTGCAAGGCAAGAGAAGCCATGAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| CDS CAA 72 bp | CTGCTAAGCAGGAAGCCCACTGACATCACCCCCAGATaGTCATCCACGTACACTGGAGACCAGCCGGAGCCG | + |
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Preference number: 6 (lower is better) Translates to: LLSRKPTDITPR*SSTYTGDQPEP Trigger: CGGCTCCGGCTGGTCTCCAGTGTACGTGGATGACAATCTGGGGGTGATGTCAGTGGGCTTCCTGCTTAGCAG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| CDS CCA 72 bp | GCCTATGTGTGGATCCAGCGGCACTTTGCCCAGAAGTaGAATCCTCAGATCCTGGCACATGGCCTCTGCACC | + |
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Preference number: 6 (lower is better) Translates to: AYVWIQRHFAQK*NPQILAHGLCT Trigger: GGTGCAGAGGCCATGTGCCAGGATCTGAGGATTCCACTTCTGGGCAAAGTGCCGCTGGATCCACACATAGGC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| CDS CAA 90 bp | TGGCCTTTGTCACAGCTCTTGCCTATGTGTGGATCCAGCGGCACTTaGCCCAGAAGTGGAATCCTCAGATCCTGGCACATGGCCTCTGCA | + |
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Preference number: 6 (lower is better) Translates to: WPLSQLLPMCGSSGT*PRSGILRSWHMASA Trigger: TGCAGAGGCCATGTGCCAGGATCTGAGGATTCCACTTCTGGGCAAAGTGCCGCTGGATCCACACATAGGCAAGAGCTGTGACAAAGGCCA 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| CDS TCA 72 bp | GACAGCATCATCTGGGCTGCTAAGCAGGAAGCCCACTaGCATCACCCCCAGATTGTCATCCACGTACACTGG | + |
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Preference number: 6 (lower is better) Translates to: DSIIWAAKQEAH*HHPQIVIHVHW Trigger: CCAGTGTACGTGGATGACAATCTGGGGGTGATGTCAGTGGGCTTCCTGCTTAGCAGCCCAGATGATGCTGTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| CDS GCA 72 bp | CACAGCTCTTGCCTATGTGTGGATCCAGCGGCACTTTaGCCAGAAGTGGAATCCTCAGATCCTGGCACATGG | + |
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Preference number: 6 (lower is better) Translates to: HSSCLCVDPAAL*PEVESSDPGTW Trigger: CCATGTGCCAGGATCTGAGGATTCCACTTCTGGGCAAAGTGCCGCTGGATCCACACATAGGCAAGAGCTGTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| CDS CAA 72 bp | TCACAGCTCTTGCCTATGTGTGGATCCAGCGGCACTTaGCCCAGAAGTGGAATCCTCAGATCCTGGCACATG | + |
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Preference number: 6 (lower is better) Translates to: SQLLPMCGSSGT*PRSGILRSWHM Trigger: CATGTGCCAGGATCTGAGGATTCCACTTCTGGGCAAAGTGCCGCTGGATCCACACATAGGCAAGAGCTGTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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| CDS CAA 72 bp | TTCCCAACGCCGCCTTTCCCAGACAGCACCAAGAGCTaGTGTCTCACCGTCTTCATCTTCTCTCTGATTTCC | + |
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Preference number: 6 (lower is better) Translates to: FPTPPFPDSTKS*CLTVFIFSLIS Trigger: GGAAATCAGAGAGAAGATGAAGACGGTGAGACACAAGCTCTTGGTGCTGTCTGGGAAAGGCGGCGTTGGGAA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000023146.5 ENSMUST00000140157.8 |
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| CDS CCA 72 bp | AAAAGACTGGCCTTTGTCACAGCTCTTGCCTATGTGTaGATCCAGCGGCACTTTGCCCAGAAGTGGAATCCT | + |
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Preference number: 6 (lower is better) Translates to: KRLAFVTALAYV*IQRHFAQKWNP Trigger: AGGATTCCACTTCTGGGCAAAGTGCCGCTGGATCCACACATAGGCAAGAGCTGTGACAAAGGCCAGTCTTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000023146.5 |
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