Pregenerated sensors for NTSR2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000020591Ensembl transcript IDs: ENSMUST00000111064.3, ENSMUST00000220892.2, ENSMUST00000221049.2, ENSMUST00000221596.2
Found 81 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CACCTTGGTTGCACAGGTGGGAAGTTGAGGGCAGGAGGTGTTACGTaGCTTGCCTGCAGTATGCACTGGTCAATGACTGCGCTGGGTCAG | + |
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Preference number: 1 (lower is better) Translates to: HLGCTGGKLRAGGVT*LACSMHWSMTALGQ Trigger: CTGACCCAGCGCAGTCATTGACCAGTGCATACTGCAGGCAAGCCACGTAACACCTCCTGCCCTCAACTTCCCACCTGTGCAACCAAGGTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| 3UTR GCA 90 bp | TGGTTGCACAGGTGGGAAGTTGAGGGCAGGAGGTGTTACGTGGCTTaGCTGCAGTATGCACTGGTCAATGACTGCGCTGGGTCAGTAGGT | + |
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Preference number: 1 (lower is better) Translates to: WLHRWEVEGRRCYVA*LQYALVNDCAGSVG Trigger: ACCTACTGACCCAGCGCAGTCATTGACCAGTGCATACTGCAGGCAAGCCACGTAACACCTCCTGCCCTCAACTTCCCACCTGTGCAACCA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| 3UTR CCA 90 bp | CAAAGCCGGAAACTGTACGTACTAGTAGTTGACTCTGGGGCTTCTTaGGGTAAGGGCACCACGGAGCGCTGTTCACCACACAGGGAACTG | + |
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Preference number: 1 (lower is better) Translates to: QSRKLYVLVVDSGAS*GKGTTERCSPHREL Trigger: CAGTTCCCTGTGTGGTGAACAGCGCTCCGTGGTGCCCTTACCCCAAGAAGCCCCAGAGTCAACTACTAGTACGTACAGTTTCCGGCTTTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221049.2 |
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| 3UTR TCA 90 bp | AGGCAATTCGTCCTATTCTACACCTTGGTTGCACAGGTGGGAAGTTaGGGGCAGGAGGTGTTACGTGGCTTGCCTGCAGTATGCACTGGT | + |
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Preference number: 1 (lower is better) Translates to: RQFVLFYTLVAQVGS*GQEVLRGLPAVCTG Trigger: ACCAGTGCATACTGCAGGCAAGCCACGTAACACCTCCTGCCCTCAACTTCCCACCTGTGCAACCAAGGTGTAGAATAGGACGAATTGCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| 3UTR-3UTR TCA 90 bp | CCAGGCCTGGCACTGGGCACCTTCATCACTAGGCAATTCGTCCTATTCTACACCGCACAGGTGGGAAGTTaGGGGCAGGAGGTGTTACGT | + |
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Preference number: 2 (lower is better) Translates to: PGLALGTFITRQFVLFYTAQVGS*GQEVLR Trigger: ACGTAACACCTCCTGCCCTCAACTTCCCACCTGTGC...GGTGTAGAATAGGACGAATTGCCTAGTGATGAAGGTGCCCAGTGCCAGGCCTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| 3UTR-3UTR TCA 90 bp | CTGTACCAGGCCTGGCACTGGGCACCTTCATCACTAGGCAATTCGTCCTATTCTATGGCATGGCTTATCTaGTGGGTGTGTCCCAAGCAG | + |
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Preference number: 2 (lower is better) Translates to: LYQAWHWAPSSLGNSSYSMAWLI*WVCPKQ Trigger: CTGCTTGGGACACACCCATCAGATAAGCCATGCCAT...AGAATAGGACGAATTGCCTAGTGATGAAGGTGCCCAGTGCCAGGCCTGGTACAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| 3UTR-3UTR CCA 90 bp | GCAGCCATTGTTTGTTCTCTTCACACTTGTATTTCACCCAGGCTGGGGTTTCTTGACTCTGGGGCTTCTTaGGGTAAGGGCACCACGGAG | + |
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Preference number: 2 (lower is better) Translates to: AAIVCSLHTCISPRLGFLDSGAS*GKGTTE Trigger: CTCCGTGGTGCCCTTACCCCAAGAAGCCCCAGAGTC...AAGAAACCCCAGCCTGGGTGAAATACAAGTGTGAAGAGAACAAACAATGGCTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000221049.2 |
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| 3UTR-3UTR TCA 90 bp | GCAGCCATTGTTTGTTCTCTTCACACTTGTATTTCACCCAGGCTGGGGTTTCTTCACCACACAGGGAACTaGGAGATTCCAGAAAGAGCT | + |
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Preference number: 2 (lower is better) Translates to: AAIVCSLHTCISPRLGFLHHTGN*EIPERA Trigger: AGCTCTTTCTGGAATCTCTCAGTTCCCTGTGTGGTG...AAGAAACCCCAGCCTGGGTGAAATACAAGTGTGAAGAGAACAAACAATGGCTGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221049.2 |
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| 3UTR-3UTR TCA 90 bp | TTATCTGATGGGTGTGTCCCAAGCAGCCATTGTTTGTTCTCTTCACACTTGTATATGGCATGGCTTATCTaGTGGGTGTGTCCCAAGCAG | + |
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Preference number: 2 (lower is better) Translates to: LSDGCVPSSHCLFSSHLYMAWLI*WVCPKQ Trigger: CTGCTTGGGACACACCCATCAGATAAGCCATGCCAT...ATACAAGTGTGAAGAGAACAAACAATGGCTGCTTGGGACACACCCATCAGATAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221049.2 |
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| 3UTR GCA 72 bp | GGGAAGTTGAGGGCAGGAGGTGTTACGTGGCTTGCCTaGAGTATGCACTGGTCAATGACTGCGCTGGGTCAG | + |
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Preference number: 3 (lower is better) Translates to: GKLRAGGVTWLA*SMHWSMTALGQ Trigger: CTGACCCAGCGCAGTCATTGACCAGTGCATACTGCAGGCAAGCCACGTAACACCTCCTGCCCTCAACTTCCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| 3UTR GCA 72 bp | AGGTGGGAAGTTGAGGGCAGGAGGTGTTACGTGGCTTaGCTGCAGTATGCACTGGTCAATGACTGCGCTGGG | + |
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Preference number: 3 (lower is better) Translates to: RWEVEGRRCYVA*LQYALVNDCAG Trigger: CCCAGCGCAGTCATTGACCAGTGCATACTGCAGGCAAGCCACGTAACACCTCCTGCCCTCAACTTCCCACCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| 3UTR-3UTR CAA 90 bp | GTTCTGTACCAGGCCTGGCACTGGGCACCTTCATCACTAGGCAATTCGTCCTATTGCACAGGTGGGAAGTaGAGGGCAGGAGGTGTTACG | + |
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Preference number: 3 (lower is better) Translates to: VLYQAWHWAPSSLGNSSYCTGGK*RAGGVT Trigger: CGTAACACCTCCTGCCCTCAACTTCCCACCTGTGCA...ATAGGACGAATTGCCTAGTGATGAAGGTGCCCAGTGCCAGGCCTGGTACAGAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| 3UTR TCA 72 bp | GTCCTATTCTACACCTTGGTTGCACAGGTGGGAAGTTaGGGGCAGGAGGTGTTACGTGGCTTGCCTGCAGTA | + |
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Preference number: 3 (lower is better) Translates to: VLFYTLVAQVGS*GQEVLRGLPAV Trigger: TACTGCAGGCAAGCCACGTAACACCTCCTGCCCTCAACTTCCCACCTGTGCAACCAAGGTGTAGAATAGGAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| 3UTR CCA 72 bp | GGCAATTCGTCCTATTCTACACCTTGGTTGCACAGGTaGGAAGTTGAGGGCAGGAGGTGTTACGTGGCTTGC | + |
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Preference number: 3 (lower is better) Translates to: GNSSYSTPWLHR*EVEGRRCYVAC Trigger: GCAAGCCACGTAACACCTCCTGCCCTCAACTTCCCACCTGTGCAACCAAGGTGTAGAATAGGACGAATTGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| 3UTR CCA 72 bp | CTTTCTGAAGGAGGAAGACACGGCGTTGTAGAGGACTaGGGTCACTGCCGAGCTGACATAGAAGAGCGTGTT | + |
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Preference number: 3 (lower is better) Translates to: LSEGGRHGVVED*GHCRADIEERV Trigger: AACACGCTCTTCTATGTCAGCTCGGCAGTGACCCCAGTCCTCTACAACGCCGTGTCTTCCTCCTTCAGAAAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221049.2 |
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| 3UTR CCA 72 bp | AAACTGTACGTACTAGTAGTTGACTCTGGGGCTTCTTaGGGTAAGGGCACCACGGAGCGCTGTTCACCACAC | + |
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Preference number: 3 (lower is better) Translates to: KLYVLVVDSGAS*GKGTTERCSPH Trigger: GTGTGGTGAACAGCGCTCCGTGGTGCCCTTACCCCAAGAAGCCCCAGAGTCAACTACTAGTACGTACAGTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221049.2 |
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| 3UTR CCA 72 bp | TCTTCACACTTGTATTTCACCCAGGCTGGGGTTTCTTaGGGATCCCCAAAGCCGGAAACTGTACGTACTAGT | + |
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Preference number: 3 (lower is better) Translates to: SSHLYFTQAGVS*GSPKPETVRTS Trigger: ACTAGTACGTACAGTTTCCGGCTTTGGGGATCCCCAAGAAACCCCAGCCTGGGTGAAATACAAGTGTGAAGA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000221049.2 |
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| 3UTR TCA 72 bp | GGTCCGCTTAGACTGTTAGTAATGGCATGGCTTATCTaGTGGGTGTGTCCCAAGCAGCCATTGTTTGTTCTC | + |
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Preference number: 3 (lower is better) Translates to: GPLRLLVMAWLI*WVCPKQPLFVL Trigger: GAGAACAAACAATGGCTGCTTGGGACACACCCATCAGATAAGCCATGCCATTACTAACAGTCTAAGCGGACC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111064.3 ENSMUST00000221049.2 |
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| 3UTR CCA 72 bp | TTGTTTGTTCTCTTCACACTTGTATTTCACCCAGGCTaGGGTTTCTTGGGGATCCCCAAAGCCGGAAACTGT | + |
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Preference number: 3 (lower is better) Translates to: LFVLFTLVFHPG*GFLGIPKAGNC Trigger: ACAGTTTCCGGCTTTGGGGATCCCCAAGAAACCCCAGCCTGGGTGAAATACAAGTGTGAAGAGAACAAACAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000221049.2 |
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| CDS-3UTR CCA 90 bp | TTGACTCTGGGGCTTCTTGGGGTAAGGGCACCACGGAGCGCTGTTCACCACACAGGCTCCAGGCTGGCTTaGACCCCCAGGGAGAGGGTC | + |
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Preference number: 4 (lower is better) Translates to: LTLGLLGVRAPRSAVHHTGSRLA*TPRERV Trigger: GACCCTCTCCCTGGGGGTCCAAGCCAGCCTGGAGCC...TGTGTGGTGAACAGCGCTCCGTGGTGCCCTTACCCCAAGAAGCCCCAGAGTCAA 63% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000221049.2 |
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| CDS-3UTR TCA 90 bp | GCTTCTTGGGGTAAGGGCACCACGGAGCGCTGTTCACCACACAGGGAACTGAGAGCACGTTCACCTGGATaGAGACCTGGAGCGTGGCGC | + |
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Preference number: 4 (lower is better) Translates to: ASWGKGTTERCSPHRELRARSPG*RPGAWR Trigger: GCGCCACGCTCCAGGTCTTCATCCAGGTGAACGTGC...TCTCAGTTCCCTGTGTGGTGAACAGCGCTCCGTGGTGCCCTTACCCCAAGAAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221049.2 |
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| CDS-3UTR CCA 90 bp | CCAGGCCTGGCACTGGGCACCTTCATCACTAGGCAATTCGTCCTATTCTACACCGCTCTGCGCTCAGGCTaGCCACGCTCAGCACCGTGG | + |
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Preference number: 4 (lower is better) Translates to: PGLALGTFITRQFVLFYTALRSG*PRSAPW Trigger: CCACGGTGCTGAGCGTGGCCAGCCTGAGCGCAGAGC...GGTGTAGAATAGGACGAATTGCCTAGTGATGAAGGTGCCCAGTGCCAGGCCTGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| CDS-3UTR CCA 90 bp | GGGGCTTCTTGGGGTAAGGGCACCACGGAGCGCTGTTCACCACACAGGGAACTGCATACACAGCCACGATaGCTCCAGGCTGGCTTGGAC | + |
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Preference number: 4 (lower is better) Translates to: GASWGKGTTERCSPHRELHTQPR*LQAGLD Trigger: GTCCAAGCCAGCCTGGAGCCATCGTGGCTGTGTATG...CAGTTCCCTGTGTGGTGAACAGCGCTCCGTGGTGCCCTTACCCCAAGAAGCCCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000221049.2 |
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| CDS-3UTR CCA 90 bp | CCAGGCCTGGCACTGGGCACCTTCATCACTAGGCAATTCGTCCTATTCTACACCCCACGCTCAGCACCGTaGCGTAGGCGCACAGCTCAC | + |
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Preference number: 4 (lower is better) Translates to: PGLALGTFITRQFVLFYTPRSAP*RRRTAH Trigger: GTGAGCTGTGCGCCTACGCCACGGTGCTGAGCGTGG...GGTGTAGAATAGGACGAATTGCCTAGTGATGAAGGTGCCCAGTGCCAGGCCTGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| CDS-3UTR GCA 90 bp | CCAGGCCTGGCACTGGGCACCTTCATCACTAGGCAATTCGTCCTATTCTACACCGCCTTCAGCACCACGTaGACGGACAGCGCATTGCCG | + |
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Preference number: 4 (lower is better) Translates to: PGLALGTFITRQFVLFYTAFSTT*TDSALP Trigger: CGGCAATGCGCTGTCCGTGCACGTGGTGCTGAAGGC...GGTGTAGAATAGGACGAATTGCCTAGTGATGAAGGTGCCCAGTGCCAGGCCTGG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| CDS-3UTR CCA 90 bp | GGCAATTCGTCCTATTCTACACCTTGGTTGCACAGGTGGGAAGTTGAGGGCAGGCTCACCAGGCTGGCTTaGACCCCCAGGGAGAGGGTC | + |
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Preference number: 4 (lower is better) Translates to: GNSSYSTPWLHRWEVEGRLTRLA*TPRERV Trigger: GACCCTCTCCCTGGGGGTCCAAGCCAGCCTGGTGAG...CCTGCCCTCAACTTCCCACCTGTGCAACCAAGGTGTAGAATAGGACGAATTGCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| CDS-3UTR CCA 90 bp | GGCAATTCGTCCTATTCTACACCTTGGTTGCACAGGTGGGAAGTTGAGGGCAGGACCTGGGCGCTGTGCTaGAGGCTGCGGATCTGGCTG | + |
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Preference number: 4 (lower is better) Translates to: GNSSYSTPWLHRWEVEGRTWALC*RLRIWL Trigger: CAGCCAGATCCGCAGCCTCCAGCACAGCGCCCAGGT...CCTGCCCTCAACTTCCCACCTGTGCAACCAAGGTGTAGAATAGGACGAATTGCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| CDS-3UTR TCA 90 bp | GGCAATTCGTCCTATTCTACACCTTGGTTGCACAGGTGGGAAGTTGAGGGCAGGGCACGTTCACCTGGATaGAGACCTGGAGCGTGGCGC | + |
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Preference number: 4 (lower is better) Translates to: GNSSYSTPWLHRWEVEGRARSPG*RPGAWR Trigger: GCGCCACGCTCCAGGTCTTCATCCAGGTGAACGTGC...CCTGCCCTCAACTTCCCACCTGTGCAACCAAGGTGTAGAATAGGACGAATTGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| CDS-3UTR GCA 90 bp | GGGGCTTCTTGGGGTAAGGGCACCACGGAGCGCTGTTCACCACACAGGGAACTGGCCCTCTCCATTTCGTaGTTCTGTCCCATGATAACC | + |
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Preference number: 4 (lower is better) Translates to: GASWGKGTTERCSPHRELALSIS*FCPMIT Trigger: GGTTATCATGGGACAGAAGCACGAAATGGAGAGGGC...CAGTTCCCTGTGTGGTGAACAGCGCTCCGTGGTGCCCTTACCCCAAGAAGCCCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000221049.2 |
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| CDS-3UTR GCA 90 bp | GGCAATTCGTCCTATTCTACACCTTGGTTGCACAGGTGGGAAGTTGAGGGCAGGCGCTGTGCTGGAGGCTaGGGATCTGGCTGGCATCCT | + |
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Preference number: 4 (lower is better) Translates to: GNSSYSTPWLHRWEVEGRRCAGG*GSGWHP Trigger: AGGATGCCAGCCAGATCCGCAGCCTCCAGCACAGCG...CCTGCCCTCAACTTCCCACCTGTGCAACCAAGGTGTAGAATAGGACGAATTGCC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| CDS-3UTR GCA 90 bp | GTTCTGTACCAGGCCTGGCACTGGGCACCTTCATCACTAGGCAATTCGTCCTATAGAACCTGGGCGCTGTaGTGGAGGCTGCGGATCTGG | + |
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Preference number: 4 (lower is better) Translates to: VLYQAWHWAPSSLGNSSYRTWAL*WRLRIW Trigger: CCAGATCCGCAGCCTCCAGCACAGCGCCCAGGTTCT...ATAGGACGAATTGCCTAGTGATGAAGGTGCCCAGTGCCAGGCCTGGTACAGAAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| CDS-3UTR TCA 90 bp | GTTCTGTACCAGGCCTGGCACTGGGCACCTTCATCACTAGGCAATTCGTCCTATGCGAATAGAGCGCGGTaGACAGCACCTTGGCCCAGA | + |
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Preference number: 4 (lower is better) Translates to: VLYQAWHWAPSSLGNSSYANRAR*TAPWPR Trigger: TCTGGGCCAAGGTGCTGTTCACCGCGCTCTATTCGC...ATAGGACGAATTGCCTAGTGATGAAGGTGCCCAGTGCCAGGCCTGGTACAGAAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| CDS-3UTR TCA 90 bp | CCAGGCCTGGCACTGGGCACCTTCATCACTAGGCAATTCGTCCTATTCTACACCGGATGTAGCAGTACATaGGCCTGCGGGCATGGTACG | + |
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Preference number: 4 (lower is better) Translates to: PGLALGTFITRQFVLFYTGCSST*ACGHGT Trigger: CGTACCATGCCCGCAGGCTCATGTACTGCTACATCC...GGTGTAGAATAGGACGAATTGCCTAGTGATGAAGGTGCCCAGTGCCAGGCCTGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| CDS-3UTR CCA 90 bp | GTTCTGTACCAGGCCTGGCACTGGGCACCTTCATCACTAGGCAATTCGTCCTATATGAGCCTGCGGGCATaGTACGGCAGCCAGCAGATG | + |
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Preference number: 4 (lower is better) Translates to: VLYQAWHWAPSSLGNSSYMSLRA*YGSQQM Trigger: CATCTGCTGGCTGCCGTACCATGCCCGCAGGCTCAT...ATAGGACGAATTGCCTAGTGATGAAGGTGCCCAGTGCCAGGCCTGGTACAGAAC 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| CDS-3UTR CCA 90 bp | GTTCTGTACCAGGCCTGGCACTGGGCACCTTCATCACTAGGCAATTCGTCCTATGACTCTGGGGCTTCTTaGGGTAAGGGCACCACGGAG | + |
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Preference number: 4 (lower is better) Translates to: VLYQAWHWAPSSLGNSSYDSGAS*GKGTTE Trigger: CTCCGTGGTGCCCTTACCCCAAGAAGCCCCAGAGTC...ATAGGACGAATTGCCTAGTGATGAAGGTGCCCAGTGCCAGGCCTGGTACAGAAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| CDS-3UTR TCA 90 bp | CAGGCCTGGCACTGGGCACCTTCATCACTAGGCAATTCGTCCTATTCTACACCTACGGCAGCCAGCAGATaGCATACACAGCCACGATGG | + |
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Preference number: 4 (lower is better) Translates to: QAWHWAPSSLGNSSYSTPTAASR*HTQPRW Trigger: CCATCGTGGCTGTGTATGTCATCTGCTGGCTGCCGT...AGGTGTAGAATAGGACGAATTGCCTAGTGATGAAGGTGCCCAGTGCCAGGCCTG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| CDS-3UTR CCA 90 bp | ATGGGTGTGTCCCAAGCAGCCATTGTTTGTTCTCTTCACACTTGTATTTCACCCGCTCTGCGCTCAGGCTaGCCACGCTCAGCACCGTGG | + |
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Preference number: 4 (lower is better) Translates to: MGVSQAAIVCSLHTCISPALRSG*PRSAPW Trigger: CCACGGTGCTGAGCGTGGCCAGCCTGAGCGCAGAGC...GGGTGAAATACAAGTGTGAAGAGAACAAACAATGGCTGCTTGGGACACACCCAT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221049.2 |
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| CDS-3UTR CCA 90 bp | GGCAATTCGTCCTATTCTACACCTTGGTTGCACAGGTGGGAAGTTGAGGGCAGGCAGGCTGGGGTTTCTTaGGGATCCCCAAAGCCGGAA | + |
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Preference number: 4 (lower is better) Translates to: GNSSYSTPWLHRWEVEGRQAGVS*GSPKPE Trigger: TTCCGGCTTTGGGGATCCCCAAGAAACCCCAGCCTG...CCTGCCCTCAACTTCCCACCTGTGCAACCAAGGTGTAGAATAGGACGAATTGCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| CDS-3UTR GCA 90 bp | CAGGCCTGGCACTGGGCACCTTCATCACTAGGCAATTCGTCCTATTCTACACCTGAGGACTGGGGTCACTaGCGAGCTGACATAGAAGAG | + |
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Preference number: 4 (lower is better) Translates to: QAWHWAPSSLGNSSYSTPEDWGH*RADIEE Trigger: CTCTTCTATGTCAGCTCGGCAGTGACCCCAGTCCTC...AGGTGTAGAATAGGACGAATTGCCTAGTGATGAAGGTGCCCAGTGCCAGGCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| CDS-3UTR CCA 90 bp | CAGGCCTGGCACTGGGCACCTTCATCACTAGGCAATTCGTCCTATTCTACACCTACCAGCACGTTCACCTaGATGAAGACCTGGAGCGTG | + |
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Preference number: 4 (lower is better) Translates to: QAWHWAPSSLGNSSYSTPTSTFT*MKTWSV Trigger: CACGCTCCAGGTCTTCATCCAGGTGAACGTGCTGGT...AGGTGTAGAATAGGACGAATTGCCTAGTGATGAAGGTGCCCAGTGCCAGGCCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| CDS-3UTR CCA 90 bp | CAGGCCTGGCACTGGGCACCTTCATCACTAGGCAATTCGTCCTATTCTACACCTGTATTTCACCCAGGCTaGGGTTTCTTGGGGATCCCC | + |
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Preference number: 4 (lower is better) Translates to: QAWHWAPSSLGNSSYSTPVFHPG*GFLGIP Trigger: GGGGATCCCCAAGAAACCCCAGCCTGGGTGAAATAC...AGGTGTAGAATAGGACGAATTGCCTAGTGATGAAGGTGCCCAGTGCCAGGCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| CDS-3UTR TCA 90 bp | CAGGCCTGGCACTGGGCACCTTCATCACTAGGCAATTCGTCCTATTCTACACCTCCAGAAAGAGCTTTCTaGAGGAGGAAGACACGGCGT | + |
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Preference number: 4 (lower is better) Translates to: QAWHWAPSSLGNSSYSTPPERAF*RRKTRR Trigger: ACGCCGTGTCTTCCTCCTTCAGAAAGCTCTTTCTGG...AGGTGTAGAATAGGACGAATTGCCTAGTGATGAAGGTGCCCAGTGCCAGGCCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| CDS-3UTR TCA 90 bp | CAGGCCTGGCACTGGGCACCTTCATCACTAGGCAATTCGTCCTATTCTACACCTCATTCAGAAAAGCAGTaGGTGCCAAGGGGAGAACGA | + |
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Preference number: 4 (lower is better) Translates to: QAWHWAPSSLGNSSYSTPHSEKQ*VPRGER Trigger: TCGTTCTCCCCTTGGCACTCACTGCTTTTCTGAATG...AGGTGTAGAATAGGACGAATTGCCTAGTGATGAAGGTGCCCAGTGCCAGGCCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| CDS-3UTR TCA 90 bp | CACCACGGAGCGCTGTTCACCACACAGGGAACTGAGAGATTCCAGAAAGAGCTTCATTCAGAAAAGCAGTaGGTGCCAAGGGGAGAACGA | + |
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Preference number: 4 (lower is better) Translates to: HHGALFTTQGTERFQKELHSEKQ*VPRGER Trigger: TCGTTCTCCCCTTGGCACTCACTGCTTTTCTGAATG...AAGCTCTTTCTGGAATCTCTCAGTTCCCTGTGTGGTGAACAGCGCTCCGTGGTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000221049.2 |
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| CDS-3UTR TCA 90 bp | GCCATTGTTTGTTCTCTTCACACTTGTATTTCACCCAGGCTGGGGTTTCTTGGGACGGCAGCCAGCAGATaGCATACACAGCCACGATGG | + |
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Preference number: 4 (lower is better) Translates to: AIVCSLHTCISPRLGFLGTAASR*HTQPRW Trigger: CCATCGTGGCTGTGTATGTCATCTGCTGGCTGCCGT...CCCAAGAAACCCCAGCCTGGGTGAAATACAAGTGTGAAGAGAACAAACAATGGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221049.2 |
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| CDS-3UTR TCA 90 bp | GCCATTGTTTGTTCTCTTCACACTTGTATTTCACCCAGGCTGGGGTTTCTTGGGGGATGTAGCAGTACATaGGCCTGCGGGCATGGTACG | + |
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Preference number: 4 (lower is better) Translates to: AIVCSLHTCISPRLGFLGGCSST*ACGHGT Trigger: CGTACCATGCCCGCAGGCTCATGTACTGCTACATCC...CCCAAGAAACCCCAGCCTGGGTGAAATACAAGTGTGAAGAGAACAAACAATGGC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000221049.2 |
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| CDS-3UTR TCA 90 bp | CTGTACCAGGCCTGGCACTGGGCACCTTCATCACTAGGCAATTCGTCCTATTCTCACCACACAGGGAACTaGGAGATTCCAGAAAGAGCT | + |
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Preference number: 4 (lower is better) Translates to: LYQAWHWAPSSLGNSSYSHHTGN*EIPERA Trigger: AGCTCTTTCTGGAATCTCTCAGTTCCCTGTGTGGTG...AGAATAGGACGAATTGCCTAGTGATGAAGGTGCCCAGTGCCAGGCCTGGTACAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| CDS-3UTR GCA 90 bp | CTGTACCAGGCCTGGCACTGGGCACCTTCATCACTAGGCAATTCGTCCTATTCTGCCCTCTCCATTTCGTaGTTCTGTCCCATGATAACC | + |
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Preference number: 4 (lower is better) Translates to: LYQAWHWAPSSLGNSSYSALSIS*FCPMIT Trigger: GGTTATCATGGGACAGAAGCACGAAATGGAGAGGGC...AGAATAGGACGAATTGCCTAGTGATGAAGGTGCCCAGTGCCAGGCCTGGTACAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| CDS-3UTR GCA 90 bp | CAGGCCTGGCACTGGGCACCTTCATCACTAGGCAATTCGTCCTATTCTACACCTCAGAAAAGCAGTGAGTaGCAAGGGGAGAACGAAGGA | + |
|
Preference number: 4 (lower is better) Translates to: QAWHWAPSSLGNSSYSTPQKSSE*QGENEG Trigger: TCCTTCGTTCTCCCCTTGGCACTCACTGCTTTTCTG...AGGTGTAGAATAGGACGAATTGCCTAGTGATGAAGGTGCCCAGTGCCAGGCCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| CDS-3UTR CCA 90 bp | TTATCTGATGGGTGTGTCCCAAGCAGCCATTGTTTGTTCTCTTCACACTTGTATCCACGCTCAGCACCGTaGCGTAGGCGCACAGCTCAC | + |
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Preference number: 4 (lower is better) Translates to: LSDGCVPSSHCLFSSHLYPRSAP*RRRTAH Trigger: GTGAGCTGTGCGCCTACGCCACGGTGCTGAGCGTGG...ATACAAGTGTGAAGAGAACAAACAATGGCTGCTTGGGACACACCCATCAGATAA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221049.2 |
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| CDS-3UTR CCA 90 bp | TGTGTCCCAAGCAGCCATTGTTTGTTCTCTTCACACTTGTATTTCACCCAGGCTATGAGCCTGCGGGCATaGTACGGCAGCCAGCAGATG | + |
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Preference number: 4 (lower is better) Translates to: CVPSSHCLFSSHLYFTQAMSLRA*YGSQQM Trigger: CATCTGCTGGCTGCCGTACCATGCCCGCAGGCTCAT...AGCCTGGGTGAAATACAAGTGTGAAGAGAACAAACAATGGCTGCTTGGGACACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221049.2 |
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| 3UTR CAA 72 bp | TGTGTCCCAAGCAGCCATTGTTTGTTCTCTTCACACTaGTATTTCACCCAGGCTGGGGTTTCTTGGGGATCC | + |
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Preference number: 4 (lower is better) Translates to: CVPSSHCLFSSH*YFTQAGVSWGS Trigger: GGATCCCCAAGAAACCCCAGCCTGGGTGAAATACAAGTGTGAAGAGAACAAACAATGGCTGCTTGGGACACA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000221049.2 |
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| 3UTR CAA 72 bp | GGCTTATCTGATGGGTGTGTCCCAAGCAGCCATTGTTaGTTCTCTTCACACTTGTATTTCACCCAGGCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: GLSDGCVPSSHC*FSSHLYFTQAG Trigger: CCCAGCCTGGGTGAAATACAAGTGTGAAGAGAACAAACAATGGCTGCTTGGGACACACCCATCAGATAAGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221049.2 |
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| CDS-3UTR GCA 90 bp | GCTTATCTGATGGGTGTGTCCCAAGCAGCCATTGTTTGTTCTCTTCACACTTGTCAGAAAAGCAGTGAGTaGCAAGGGGAGAACGAAGGA | + |
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Preference number: 4 (lower is better) Translates to: AYLMGVSQAAIVCSLHTCQKSSE*QGENEG Trigger: TCCTTCGTTCTCCCCTTGGCACTCACTGCTTTTCTG...ACAAGTGTGAAGAGAACAAACAATGGCTGCTTGGGACACACCCATCAGATAAGC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000221049.2 |
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| CDS GCA 90 bp | ACACGCGAGGCAGGCTCAGGCTCCCCGTCGGCCCTCTCCATTTCGTaGTTCTGTCCCATGATAACCGCCATGGGCAGGGCAAGGCCCAGA | + |
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Preference number: 5 (lower is better) Translates to: TREAGSGSPSALSIS*FCPMITAMGRARPR Trigger: TCTGGGCCTTGCCCTGCCCATGGCGGTTATCATGGGACAGAAGCACGAAATGGAGAGGGCCGACGGGGAGCCTGAGCCTGCCTCGCGTGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000111064.3 ENSMUST00000220892.2 ENSMUST00000221049.2 ENSMUST00000221596.2 |
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| CDS CCA 90 bp | ACGATGGCTCTGAGAACCTGGGCGCTGTGCTGGAGGCTGCGGATCTaGCTGGCATCCTTGTGTCTCACCAGGCTGGCTTGGACCCCCAGG | + |
|
Preference number: 5 (lower is better) Translates to: TMALRTWALCWRLRI*LASLCLTRLAWTPR Trigger: CCTGGGGGTCCAAGCCAGCCTGGTGAGACACAAGGATGCCAGCCAGATCCGCAGCCTCCAGCACAGCGCCCAGGTTCTCAGAGCCATCGT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000111064.3 ENSMUST00000221596.2 |
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| CDS TCA 90 bp | GGAGGCCTTCCTCACTCAGGAGCTCCAGGCGGCTGGGGATGGAGTTaGCTTGGGCAGAAGCTGATGGTACCTGGGAGTAGAGGGCCACCA | + |
|
Preference number: 5 (lower is better) Translates to: GGLPHSGAPGGWGWS*LGQKLMVPGSRGPP Trigger: TGGTGGCCCTCTACTCCCAGGTACCATCAGCTTCTGCCCAAGTCAACTCCATCCCCAGCCGCCTGGAGCTCCTGAGTGAGGAAGGCCTCC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111064.3 ENSMUST00000221049.2 |
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| CDS CCA 90 bp | CCTTCCTCACTCAGGAGCTCCAGGCGGCTGGGGATGGAGTTGACTTaGGCAGAAGCTGATGGTACCTGGATGAAGACCTGGAGCGTGGCG | + |
|
Preference number: 5 (lower is better) Translates to: PSSLRSSRRLGMELT*AEADGTWMKTWSVA Trigger: CGCCACGCTCCAGGTCTTCATCCAGGTACCATCAGCTTCTGCCCAAGTCAACTCCATCCCCAGCCGCCTGGAGCTCCTGAGTGAGGAAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221596.2 |
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| CDS TCA 90 bp | CAGGAGCTCCAGGCGGCTGGGGATGGAGTTGACTTGGGCAGAAGCTaGTGGTACCTGGGAGTAGAGGGCCACCAGGTGGTTGACAGTGAT | + |
|
Preference number: 5 (lower is better) Translates to: QELQAAGDGVDLGRS*WYLGVEGHQVVDSD Trigger: ATCACTGTCAACCACCTGGTGGCCCTCTACTCCCAGGTACCATCAGCTTCTGCCCAAGTCAACTCCATCCCCAGCCGCCTGGAGCTCCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111064.3 ENSMUST00000221049.2 |
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| CDS GCA 90 bp | CAGATGACATACACAGCCACGATGGCTCTGAGAACCTGGGCGCTGTaGTGGAGGCTGCGGATCTGGCTGGCATCCTTGTGTCTCACCAGG | + |
|
Preference number: 5 (lower is better) Translates to: QMTYTATMALRTWAL*WRLRIWLASLCLTR Trigger: CCTGGTGAGACACAAGGATGCCAGCCAGATCCGCAGCCTCCAGCACAGCGCCCAGGTTCTCAGAGCCATCGTGGCTGTGTATGTCATCTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111064.3 ENSMUST00000221596.2 |
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| CDS CCA 90 bp | AAGGGGAGAACGAAGGAGACCAGCACGTTCACCTGGATGAAGACCTaGAGCGTGGCGCGACTTACTAGCACCGTGCACACACGCGAGGCA | + |
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Preference number: 5 (lower is better) Translates to: KGRTKETSTFTWMKT*SVARLTSTVHTREA Trigger: TGCCTCGCGTGTGTGCACGGTGCTAGTAAGTCGCGCCACGCTCCAGGTCTTCATCCAGGTGAACGTGCTGGTCTCCTTCGTTCTCCCCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000111064.3 ENSMUST00000220892.2 ENSMUST00000221049.2 |
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| CDS CCA 90 bp | ATGACATACACAGCCACGATGGCTCTGAGAACCTGGGCGCTGTGCTaGAGGCTGCGGATCTGGCTGGCATCCTTGTGTCTCACCAGGCTG | + |
|
Preference number: 5 (lower is better) Translates to: MTYTATMALRTWALC*RLRIWLASLCLTRL Trigger: CAGCCTGGTGAGACACAAGGATGCCAGCCAGATCCGCAGCCTCCAGCACAGCGCCCAGGTTCTCAGAGCCATCGTGGCTGTGTATGTCAT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000111064.3 ENSMUST00000221596.2 |
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| CDS CCA 90 bp | AGGCGGCTGGGGATGGAGTTGACTTGGGCAGAAGCTGATGGTACCTaGATGAAGACCTGGAGCGTGGCGCGACTTACTAGCACCGTGCAC | + |
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Preference number: 5 (lower is better) Translates to: RRLGMELTWAEADGT*MKTWSVARLTSTVH Trigger: GTGCACGGTGCTAGTAAGTCGCGCCACGCTCCAGGTCTTCATCCAGGTACCATCAGCTTCTGCCCAAGTCAACTCCATCCCCAGCCGCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221596.2 |
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| CDS-3UTR CAA 90 bp | CTGTACCAGGCCTGGCACTGGGCACCTTCATCACTAGGCAATTCGTCCTATTCTTGCACGGACAGCGCATaGCCGGCTGTGCCAAGCGCG | + |
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Preference number: 5 (lower is better) Translates to: LYQAWHWAPSSLGNSSYSCTDSA*PAVPSA Trigger: CGCGCTTGGCACAGCCGGCAATGCGCTGTCCGTGCA...AGAATAGGACGAATTGCCTAGTGATGAAGGTGCCCAGTGCCAGGCCTGGTACAG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| CDS-3UTR CAA 90 bp | GGCAATTCGTCCTATTCTACACCTTGGTTGCACAGGTGGGAAGTTGAGGGCAGGGCGGTGAACAGCACCTaGGCCCAGAGGCGAGTGTCC | + |
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Preference number: 5 (lower is better) Translates to: GNSSYSTPWLHRWEVEGRAVNST*AQRRVS Trigger: GGACACTCGCCTCTGGGCCAAGGTGCTGTTCACCGC...CCTGCCCTCAACTTCCCACCTGTGCAACCAAGGTGTAGAATAGGACGAATTGCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| CDS-3UTR CAA 90 bp | GGCAATTCGTCCTATTCTACACCTTGGTTGCACAGGTGGGAAGTTGAGGGCAGGTCTCACCAGGCTGGCTaGGACCCCCAGGGAGAGGGT | + |
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Preference number: 5 (lower is better) Translates to: GNSSYSTPWLHRWEVEGRSHQAG*DPQGEG Trigger: ACCCTCTCCCTGGGGGTCCAAGCCAGCCTGGTGAGA...CCTGCCCTCAACTTCCCACCTGTGCAACCAAGGTGTAGAATAGGACGAATTGCC 59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| CDS CCA 90 bp | ATGGAGTTGACTTGGGCAGAAGCTGATGGTACCTGGATGAAGACCTaGAGCGTGGCGCGACTTACTAGCACCGTGCACACACGCGAGGCA | + |
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Preference number: 5 (lower is better) Translates to: MELTWAEADGTWMKT*SVARLTSTVHTREA Trigger: TGCCTCGCGTGTGTGCACGGTGCTAGTAAGTCGCGCCACGCTCCAGGTCTTCATCCAGGTACCATCAGCTTCTGCCCAAGTCAACTCCAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221596.2 |
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| CDS-3UTR CAA 90 bp | CAGGCCTGGCACTGGGCACCTTCATCACTAGGCAATTCGTCCTATTCTACACCTCGGCTGGGGATGGAGTaGACTTGGGCAGAAGCTGAT | + |
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Preference number: 5 (lower is better) Translates to: QAWHWAPSSLGNSSYSTPRLGME*TWAEAD Trigger: ATCAGCTTCTGCCCAAGTCAACTCCATCCCCAGCCG...AGGTGTAGAATAGGACGAATTGCCTAGTGATGAAGGTGCCCAGTGCCAGGCCTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| CDS-3UTR CAA 90 bp | GTTCTGTACCAGGCCTGGCACTGGGCACCTTCATCACTAGGCAATTCGTCCTATATCTGGCTGGCATCCTaGTGTCTCACCAGGCTGGCT | + |
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Preference number: 5 (lower is better) Translates to: VLYQAWHWAPSSLGNSSYIWLAS*CLTRLA Trigger: AGCCAGCCTGGTGAGACACAAGGATGCCAGCCAGAT...ATAGGACGAATTGCCTAGTGATGAAGGTGCCCAGTGCCAGGCCTGGTACAGAAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| CDS-3UTR CAA 90 bp | AGCCATTGTTTGTTCTCTTCACACTTGTATTTCACCCAGGCTGGGGTTTCTTGGTGGCTCCAGGCTGGCTaGGACCCCCAGGGAGAGGGT | + |
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Preference number: 5 (lower is better) Translates to: SHCLFSSHLYFTQAGVSWWLQAG*DPQGEG Trigger: ACCCTCTCCCTGGGGGTCCAAGCCAGCCTGGAGCCA...CCAAGAAACCCCAGCCTGGGTGAAATACAAGTGTGAAGAGAACAAACAATGGCT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000221049.2 |
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| CDS-3UTR CAA 90 bp | GGCAATTCGTCCTATTCTACACCTTGGTTGCACAGGTGGGAAGTTGAGGGCAGGAGGGCCACCAGGTGGTaGACAGTGATCCCATTCAGA | + |
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Preference number: 5 (lower is better) Translates to: GNSSYSTPWLHRWEVEGRRATRW*TVIPFR Trigger: TCTGAATGGGATCACTGTCAACCACCTGGTGGCCCT...CCTGCCCTCAACTTCCCACCTGTGCAACCAAGGTGTAGAATAGGACGAATTGCC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000111064.3 |
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| CDS-3UTR CAA 90 bp | CACCACGGAGCGCTGTTCACCACACAGGGAACTGAGAGATTCCAGAAAGAGCTTAGGGCCACCAGGTGGTaGACAGTGATCCCATTCAGA | + |
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Preference number: 5 (lower is better) Translates to: HHGALFTTQGTERFQKELRATRW*TVIPFR Trigger: TCTGAATGGGATCACTGTCAACCACCTGGTGGCCCT...AAGCTCTTTCTGGAATCTCTCAGTTCCCTGTGTGGTGAACAGCGCTCCGTGGTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221049.2 |
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| CDS GCA 72 bp | CGCCCGGGGCGACCCGCCCGCGCCTTCAGCACCACGTaGACGGACAGCGCATTGCCGGCTGTGCCAAGCGCG | + |
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Preference number: 6 (lower is better) Translates to: RPGRPARAFSTT*TDSALPAVPSA Trigger: CGCGCTTGGCACAGCCGGCAATGCGCTGTCCGTGCACGTGGTGCTGAAGGCGCGGGCGGGTCGCCCCGGGCG 76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000111064.3 ENSMUST00000220892.2 ENSMUST00000221596.2 |
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| CDS CAA 90 bp | AGGAGGCCTTCCTCACTCAGGAGCTCCAGGCGGCTGGGGATGGAGTaGACTTGGGCAGAAGCTGATGGTACCTGGATGAAGACCTGGAGC | + |
|
Preference number: 6 (lower is better) Translates to: RRPSSLRSSRRLGME*TWAEADGTWMKTWS Trigger: GCTCCAGGTCTTCATCCAGGTACCATCAGCTTCTGCCCAAGTCAACTCCATCCCCAGCCGCCTGGAGCTCCTGAGTGAGGAAGGCCTCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221596.2 |
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| CDS TCA 72 bp | AGGGGAGAACGAAGGAGACCAGCACGTTCACCTGGATaGAGACCTGGAGCGTGGCGCGACTTACTAGCACCG | + |
|
Preference number: 6 (lower is better) Translates to: RGERRRPARSPG*RPGAWRDLLAP Trigger: CGGTGCTAGTAAGTCGCGCCACGCTCCAGGTCTTCATCCAGGTGAACGTGCTGGTCTCCTTCGTTCTCCCCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000111064.3 ENSMUST00000220892.2 ENSMUST00000221049.2 |
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| CDS TCA 72 bp | CCTCACTCAGGAGCTCCAGGCGGCTGGGGATGGAGTTaGCTTGGGCAGAAGCTGATGGTACCTGGGAGTAGA | + |
|
Preference number: 6 (lower is better) Translates to: PHSGAPGGWGWS*LGQKLMVPGSR Trigger: TCTACTCCCAGGTACCATCAGCTTCTGCCCAAGTCAACTCCATCCCCAGCCGCCTGGAGCTCCTGAGTGAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000111064.3 ENSMUST00000221049.2 |
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| CDS CCA 72 bp | CTCAGGAGCTCCAGGCGGCTGGGGATGGAGTTGACTTaGGCAGAAGCTGATGGTACCTGGATGAAGACCTGG | + |
|
Preference number: 6 (lower is better) Translates to: LRSSRRLGMELT*AEADGTWMKTW Trigger: CCAGGTCTTCATCCAGGTACCATCAGCTTCTGCCCAAGTCAACTCCATCCCCAGCCGCCTGGAGCTCCTGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221596.2 |
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| CDS CCA 72 bp | ACGAAGGAGACCAGCACGTTCACCTGGATGAAGACCTaGAGCGTGGCGCGACTTACTAGCACCGTGCACACA | + |
|
Preference number: 6 (lower is better) Translates to: TKETSTFTWMKT*SVARLTSTVHT Trigger: TGTGTGCACGGTGCTAGTAAGTCGCGCCACGCTCCAGGTCTTCATCCAGGTGAACGTGCTGGTCTCCTTCGT 58% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000111064.3 ENSMUST00000220892.2 ENSMUST00000221049.2 |
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| CDS CCA 72 bp | GATGACATACACAGCCACGATGGCTCCAGGCTGGCTTaGACCCCCAGGGAGAGGGTCTTTCTCCATGTGATG | + |
|
Preference number: 6 (lower is better) Translates to: DDIHSHDGSRLA*TPRERVFLHVM Trigger: CATCACATGGAGAAAGACCCTCTCCCTGGGGGTCCAAGCCAGCCTGGAGCCATCGTGGCTGTGTATGTCATC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000221049.2 |
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| CDS CAA 72 bp | TCCTCACTCAGGAGCTCCAGGCGGCTGGGGATGGAGTaGACTTGGGCAGAAGCTGATGGTACCTGGATGAAG | + |
|
Preference number: 6 (lower is better) Translates to: SSLRSSRRLGME*TWAEADGTWMK Trigger: CTTCATCCAGGTACCATCAGCTTCTGCCCAAGTCAACTCCATCCCCAGCCGCCTGGAGCTCCTGAGTGAGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000221596.2 |
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| CDS CCA 72 bp | ACTTGGGCAGAAGCTGATGGTACCTGGATGAAGACCTaGAGCGTGGCGCGACTTACTAGCACCGTGCACACA | + |
|
Preference number: 6 (lower is better) Translates to: TWAEADGTWMKT*SVARLTSTVHT Trigger: TGTGTGCACGGTGCTAGTAAGTCGCGCCACGCTCCAGGTCTTCATCCAGGTACCATCAGCTTCTGCCCAAGT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000221596.2 |
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