RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NTSR1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000027568

Ensembl transcript IDs: ENSMUST00000029084.9, ENSMUST00000170448.2

Found 242 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp TGGGCCTGTCTTGTTTGGAGACAGCTCCCAGAGATGAAGGGTGCCTaGTTTTCCAGGCGCCTAGAACCTGGGCCAGGGTGGCTGCTTGGC +
Preference number: 1 (lower is better)
Translates to: WACLVWRQLPEMKGA*FSRRLEPGPGWLLG
Trigger: GCCAAGCAGCCACCCTGGCCCAGGTTCTAGGCGCCTGGAAAAGCAGGCACCCTTCATCTCTGGGAGCTGTCTCCAAACAAGACAGGCCCA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR CCA 90 bp CCCCTTACCTGTGGAGTCTCAGACACTGGCATCTTGCTGAGGACCTaGCTCAGTGCCCCTTCTCAGAAGTCCCAGCCTGAAGCCAGCTGC +
Preference number: 1 (lower is better)
Translates to: PLTCGVSDTGILLRT*LSAPSQKSQPEASC
Trigger: GCAGCTGGCTTCAGGCTGGGACTTCTGAGAAGGGGCACTGAGCCAGGTCCTCAGCAAGATGCCAGTGTCTGAGACTCCACAGGTAAGGGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR CCA 90 bp TATGCCTCAGTCCAGGGCTGCTGGCCAGCTAGATGCTGGGGTGCTTaGCCTCCCCTTACCTGTGGAGTCTCAGACACTGGCATCTTGCTG +
Preference number: 1 (lower is better)
Translates to: YASVQGCWPARCWGA*PPLTCGVSDTGILL
Trigger: CAGCAAGATGCCAGTGTCTGAGACTCCACAGGTAAGGGGAGGCCAAGCACCCCAGCATCTAGCTGGCCAGCAGCCCTGGACTGAGGCATA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR TCA 90 bp CTTGGCCTCCCCTTACCTGTGGAGTCTCAGACACTGGCATCTTGCTaGGGACCTGGCTCAGTGCCCCTTCTCAGAAGTCCCAGCCTGAAG +
Preference number: 1 (lower is better)
Translates to: LGLPLPVESQTLASC*GPGSVPLLRSPSLK
Trigger: CTTCAGGCTGGGACTTCTGAGAAGGGGCACTGAGCCAGGTCCTCAGCAAGATGCCAGTGTCTGAGACTCCACAGGTAAGGGGAGGCCAAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR CCA 90 bp GTGCATGGCATCCTGGGACTGTCTCCAAGTGCCCAGCCAGCTTGTTaGCTGGAGGCTGAATGGGCCTGTCTTGTTTGGAGACAGCTCCCA +
Preference number: 1 (lower is better)
Translates to: VHGILGLSPSAQPAC*LEAEWACLVWRQLP
Trigger: TGGGAGCTGTCTCCAAACAAGACAGGCCCATTCAGCCTCCAGCCAACAAGCTGGCTGGGCACTTGGAGACAGTCCCAGGATGCCATGCAC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR CCA 90 bp TGGCGGCTGGTTAACAAATTGACATATGCCTCAGTCCAGGGCTGCTaGCCAGCTAGATGCTGGGGTGCTTGGCCTCCCCTTACCTGTGGA +
Preference number: 1 (lower is better)
Translates to: WRLVNKLTYASVQGC*PARCWGAWPPLTCG
Trigger: TCCACAGGTAAGGGGAGGCCAAGCACCCCAGCATCTAGCTGGCCAGCAGCCCTGGACTGAGGCATATGTCAATTTGTTAACCAGCCGCCA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR TCA 90 bp GGCAGGAGTAGAGGCATAAAGGGGCTGAGATGGAGCCTGTGTCTCTaGACCCAAGTCCAACATCAGACACTGTCTCGCCCTGCCAGTGCA +
Preference number: 1 (lower is better)
Translates to: GRSRGIKGLRWSLCL*TQVQHQTLSRPASA
Trigger: TGCACTGGCAGGGCGAGACAGTGTCTGATGTTGGACTTGGGTTCAGAGACACAGGCTCCATCTCAGCCCCTTTATGCCTCTACTCCTGCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR CCA 90 bp CATCCAGGTGTGGCATGGATTCCCACAGCTTCCAGCTGTGGGCCCTaGACCTTACACAGTAATTTTGGGGCTTCTCTGGACCACTCTGGG +
Preference number: 1 (lower is better)
Translates to: HPGVAWIPTASSCGP*TLHSNFGASLDHSG
Trigger: CCCAGAGTGGTCCAGAGAAGCCCCAAAATTACTGTGTAAGGTCCAGGGCCCACAGCTGGAAGCTGTGGGAATCCATGCCACACCTGGATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR CCA 90 bp GGAATTGGGGTCTCTTTAGTGGGCCATAGCCATCCAGGTGTGGCATaGATTCCCACAGCTTCCAGCTGTGGGCCCTGGACCTTACACAGT +
Preference number: 1 (lower is better)
Translates to: GIGVSLVGHSHPGVA*IPTASSCGPWTLHS
Trigger: ACTGTGTAAGGTCCAGGGCCCACAGCTGGAAGCTGTGGGAATCCATGCCACACCTGGATGGCTATGGCCCACTAAAGAGACCCCAATTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR CCA 90 bp CACTTGACTCTCCTGCTACTTCTACCTTGTTGGTGCATGGCATCCTaGGACTGTCTCCAAGTGCCCAGCCAGCTTGTTGGCTGGAGGCTG +
Preference number: 1 (lower is better)
Translates to: HLTLLLLLPCWCMAS*DCLQVPSQLVGWRL
Trigger: CAGCCTCCAGCCAACAAGCTGGCTGGGCACTTGGAGACAGTCCCAGGATGCCATGCACCAACAAGGTAGAAGTAGCAGGAGAGTCAAGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR CCA 90 bp CAGCCTGCCAAGAAAGGGTCTGGACATAAGGCTCAGAGAGTGCTATaGTATCTGCTGGACCAGGGCAGGAGTAGAGGCATAAAGGGGCTG +
Preference number: 1 (lower is better)
Translates to: QPAKKGSGHKAQRVL*YLLDQGRSRGIKGL
Trigger: CAGCCCCTTTATGCCTCTACTCCTGCCCTGGTCCAGCAGATACCATAGCACTCTCTGAGCCTTATGTCCAGACCCTTTCTTGGCAGGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR TCA 90 bp GAGGTGAAGGTCCCCGTGCAAAGCCACTTGAAGCTTGTCCTGTGTTaGTTCCAGGCCAGCCCTTTTATCCTTCCTGGGCATGTGGGAATT +
Preference number: 1 (lower is better)
Translates to: EVKVPVQSHLKLVLC*FQASPFILPGHVGI
Trigger: AATTCCCACATGCCCAGGAAGGATAAAAGGGCTGGCCTGGAATCAACACAGGACAAGCTTCAAGTGGCTTTGCACGGGGACCTTCACCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR TCA 90 bp TTGTTTTATAGTTCAGAGGGAGCAGAGGCTAGCCTGGGCTGTGACTaGGCCTCCCATGTCCCGTGGCAATTTCATCCTTACAGAGCAGCT +
Preference number: 1 (lower is better)
Translates to: LFYSSEGAEASLGCD*ASHVPWQFHPYRAA
Trigger: AGCTGCTCTGTAAGGATGAAATTGCCACGGGACATGGGAGGCTCAGTCACAGCCCAGGCTAGCCTCTGCTCCCTCTGAACTATAAAACAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR GCA 90 bp ACCTGGCTCAGTGCCCCTTCTCAGAAGTCCCAGCCTGAAGCCAGCTaGTGTCAGACCTTAGTCTATACATCTGTATATGAGACGCAGAAC +
Preference number: 1 (lower is better)
Translates to: TWLSAPSQKSQPEAS*CQTLVYTSVYETQN
Trigger: GTTCTGCGTCTCATATACAGATGTATAGACTAAGGTCTGACAGCAGCTGGCTTCAGGCTGGGACTTCTGAGAAGGGGCACTGAGCCAGGT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR CCA 90 bp TCAGACACTGTCTCGCCCTGCCAGTGCAGTTCCAAGGTGCTGTTATaGTTACAACAGCTCATCTGTCCAGGCCCAATGTGGTGCTTTCAT +
Preference number: 1 (lower is better)
Translates to: SDTVSPCQCSSKVLL*LQQLICPGPMWCFH
Trigger: ATGAAAGCACCACATTGGGCCTGGACAGATGAGCTGTTGTAACCATAACAGCACCTTGGAACTGCACTGGCAGGGCGAGACAGTGTCTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR GCA 90 bp TCTCTGAACCCAAGTCCAACATCAGACACTGTCTCGCCCTGCCAGTaGAGTTCCAAGGTGCTGTTATGGTTACAACAGCTCATCTGTCCA +
Preference number: 1 (lower is better)
Translates to: SLNPSPTSDTVSPCQ*SSKVLLWLQQLICP
Trigger: TGGACAGATGAGCTGTTGTAACCATAACAGCACCTTGGAACTGCACTGGCAGGGCGAGACAGTGTCTGATGTTGGACTTGGGTTCAGAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR CCA 90 bp TTTTGCAAAAGGCTACACTTGACTCTCCTGCTACTTCTACCTTGTTaGTGCATGGCATCCTGGGACTGTCTCCAAGTGCCCAGCCAGCTT +
Preference number: 1 (lower is better)
Translates to: FCKRLHLTLLLLLPC*CMASWDCLQVPSQL
Trigger: AAGCTGGCTGGGCACTTGGAGACAGTCCCAGGATGCCATGCACCAACAAGGTAGAAGTAGCAGGAGAGTCAAGTGTAGCCTTTTGCAAAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR TCA 90 bp GAGGAGGGTGTTCTTTTATTGAAGTGTGGAGGGTGGGTGGCATTCTaGCAGATATTTGGGGCACACGACTTGTTTCCACATCACGACTGG +
Preference number: 1 (lower is better)
Translates to: EEGVLLLKCGGWVAF*QIFGAHDLFPHHDW
Trigger: CCAGTCGTGATGTGGAAACAAGTCGTGTGCCCCAAATATCTGTCAGAATGCCACCCACCCTCCACACTTCAATAAAAGAACACCCTCCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
3UTR CCA 90 bp AGCATAGGATACCCAGCCAGGGTCACAGGTGTGTCTGGTGGTGCATaGATGTATGTCCCTAATTACACCAAGCACACAGACAAGATGCTA +
Preference number: 1 (lower is better)
Translates to: SIGYPARVTGVSGGA*MYVPNYTKHTDKML
Trigger: TAGCATCTTGTCTGTGTGCTTGGTGTAATTAGGGACATACATCCATGCACCACCAGACACACCTGTGACCCTGGCTGGGTATCCTATGCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
3UTR-3UTR CCA 90 bp TCCAGGGCTGCTGGCCAGCTAGATGCTGGGGTGCTTGGCCTCCCCTTACCTGTGCCCAGCAAAGCCACCTaGACTGGGGAGGCTGGACCC +
Preference number: 2 (lower is better)
Translates to: SRAAGQLDAGVLGLPLPVPSKAT*TGEAGP
Trigger: GGGTCCAGCCTCCCCAGTCCAGGTGGCTTTGCTGGG...CACAGGTAAGGGGAGGCCAAGCACCCCAGCATCTAGCTGGCCAGCAGCCCTGGA
66% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR CAA 90 bp GGTGCTTGGCCTCCCCTTACCTGTGGAGTCTCAGACACTGGCATCTaGCTGAGGACCTGGCTCAGTGCCCCTTCTCAGAAGTCCCAGCCT +
Preference number: 2 (lower is better)
Translates to: GAWPPLTCGVSDTGI*LRTWLSAPSQKSQP
Trigger: AGGCTGGGACTTCTGAGAAGGGGCACTGAGCCAGGTCCTCAGCAAGATGCCAGTGTCTGAGACTCCACAGGTAAGGGGAGGCCAAGCACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR-3UTR GCA 90 bp CTTGTTGGTGCATGGCATCCTGGGACTGTCTCCAAGTGCCCAGCCAGCTTGTTGGCCTCAGTCCAGGGCTaGTGGCCAGCTAGATGCTGG +
Preference number: 2 (lower is better)
Translates to: LVGAWHPGTVSKCPASLLASVQG*WPARCW
Trigger: CCAGCATCTAGCTGGCCAGCAGCCCTGGACTGAGGC...CAACAAGCTGGCTGGGCACTTGGAGACAGTCCCAGGATGCCATGCACCAACAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR-3UTR CCA 90 bp GGGGCTTCCCTCTTGGGTGATCACATCTTCCTGGTGTCAGCCTTGATCCGGACTGCCCAGCCAGCTTGTTaGCTGGAGGCTGAATGGGCC +
Preference number: 2 (lower is better)
Translates to: GASLLGDHIFLVSALIRTAQPAC*LEAEWA
Trigger: GGCCCATTCAGCCTCCAGCCAACAAGCTGGCTGGGC...AGTCCGGATCAAGGCTGACACCAGGAAGATGTGATCACCCAAGAGGGAAGCCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
3UTR CAA 90 bp GGAGGGGCTTCCCTCTTGGGTGATCACATCTTCCTGGTGTCAGCCTaGATCCGGACTCACCCAGGTCCTGCCCTTGATGGCCTGAGGAAT +
Preference number: 2 (lower is better)
Translates to: GGASLLGDHIFLVSA*IRTHPGPALDGLRN
Trigger: ATTCCTCAGGCCATCAAGGGCAGGACCTGGGTGAGTCCGGATCAAGGCTGACACCAGGAAGATGTGATCACCCAAGAGGGAAGCCCCTCC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
3UTR-3UTR CCA 90 bp TGTCCCACTTCTGTGTACTCCAGGCTGAGTCCTTCAAGACAGTCCCGGTCCGCCCACAGCTTCCAGCTGTaGGCCCTGGACCTTACACAG +
Preference number: 2 (lower is better)
Translates to: CPTSVYSRLSPSRQSRSAHSFQL*ALDLTQ
Trigger: CTGTGTAAGGTCCAGGGCCCACAGCTGGAAGCTGTG...GGCGGACCGGGACTGTCTTGAAGGACTCAGCCTGGAGTACACAGAAGTGGGACA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
3UTR-3UTR CCA 90 bp CATGGCATCCTGGGACTGTCTCCAAGTGCCCAGCCAGCTTGTTGGCTGGAGGCTATCTTGCTGAGGACCTaGCTCAGTGCCCCTTCTCAG +
Preference number: 2 (lower is better)
Translates to: HGILGLSPSAQPACWLEAILLRT*LSAPSQ
Trigger: CTGAGAAGGGGCACTGAGCCAGGTCCTCAGCAAGAT...AGCCTCCAGCCAACAAGCTGGCTGGGCACTTGGAGACAGTCCCAGGATGCCATG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR-3UTR TCA 90 bp CTGGTGTCAGCCTTGATCCGGACTCACCCAGGTCCTGCCCTTGATGGCCTGAGGTGGGGTTCAAGTACTTaGACACCCTCCCCATTTCTC +
Preference number: 2 (lower is better)
Translates to: LVSALIRTHPGPALDGLRWGSST*TPSPFL
Trigger: GAGAAATGGGGAGGGTGTTCAAGTACTTGAACCCCA...CCTCAGGCCATCAAGGGCAGGACCTGGGTGAGTCCGGATCAAGGCTGACACCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
3UTR-3UTR GCA 90 bp TCCAACATCAGACACTGTCTCGCCCTGCCAGTGCAGTTCCAAGGTGCTGTTATGGGGGGTTGGGGGAGTTaGTGCCCTGTGCACAGGCTA +
Preference number: 2 (lower is better)
Translates to: SNIRHCLALPVQFQGAVMGGWGS*CPVHRL
Trigger: TAGCCTGTGCACAGGGCAGCAACTCCCCCAACCCCC...CATAACAGCACCTTGGAACTGCACTGGCAGGGCGAGACAGTGTCTGATGTTGGA
58% GC, longest homopolymer 6 nt, total homopolymer stretches 11 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
3UTR-3UTR CCA 90 bp AGATGCTGGGGTGCTTGGCCTCCCCTTACCTGTGGAGTCTCAGACACTGGCATCGCTCAGAGAGTGCTATaGTATCTGCTGGACCAGGGC +
Preference number: 2 (lower is better)
Translates to: RCWGAWPPLTCGVSDTGIAQRVL*YLLDQG
Trigger: GCCCTGGTCCAGCAGATACCATAGCACTCTCTGAGC...GATGCCAGTGTCTGAGACTCCACAGGTAAGGGGAGGCCAAGCACCCCAGCATCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR-3UTR CCA 90 bp GTGTCAGCCTTGATCCGGACTCACCCAGGTCCTGCCCTTGATGGCCTGAGGAATCATCCAGGTGTGGCATaGATTCCCACAGCTTCCAGC +
Preference number: 2 (lower is better)
Translates to: VSALIRTHPGPALDGLRNHPGVA*IPTASS
Trigger: GCTGGAAGCTGTGGGAATCCATGCCACACCTGGATG...ATTCCTCAGGCCATCAAGGGCAGGACCTGGGTGAGTCCGGATCAAGGCTGACAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
3UTR-3UTR CCA 90 bp GTGTCAGCCTTGATCCGGACTCACCCAGGTCCTGCCCTTGATGGCCTGAGGAATATCTTGCTGAGGACCTaGCTCAGTGCCCCTTCTCAG +
Preference number: 2 (lower is better)
Translates to: VSALIRTHPGPALDGLRNILLRT*LSAPSQ
Trigger: CTGAGAAGGGGCACTGAGCCAGGTCCTCAGCAAGAT...ATTCCTCAGGCCATCAAGGGCAGGACCTGGGTGAGTCCGGATCAAGGCTGACAC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
3UTR CAA 90 bp GAGGGGCTCCCATGCAGACATTTCTTAGGAGGAGGGGCTTCCCTCTaGGGTGATCACATCTTCCTGGTGTCAGCCTTGATCCGGACTCAC +
Preference number: 2 (lower is better)
Translates to: EGLPCRHFLGGGASL*GDHIFLVSALIRTH
Trigger: GTGAGTCCGGATCAAGGCTGACACCAGGAAGATGTGATCACCCAAGAGGGAAGCCCCTCCTCCTAAGAAATGTCTGCATGGGAGCCCCTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
3UTR-3UTR TCA 90 bp ATGGCATCCTGGGACTGTCTCCAAGTGCCCAGCCAGCTTGTTGGCTGGAGGCTGAAGCTTGTCCTGTGTTaGTTCCAGGCCAGCCCTTTT +
Preference number: 2 (lower is better)
Translates to: MASWDCLQVPSQLVGWRLKLVLC*FQASPF
Trigger: AAAAGGGCTGGCCTGGAATCAACACAGGACAAGCTT...CAGCCTCCAGCCAACAAGCTGGCTGGGCACTTGGAGACAGTCCCAGGATGCCAT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR-3UTR TCA 90 bp CCTCCCATGTCCCGTGGCAATTTCATCCTTACAGAGCAGCTGCATGTCCAGCCATCAGAAGTCCCAGCCTaGAGCCAGCTGCTGTCAGAC +
Preference number: 2 (lower is better)
Translates to: PPMSRGNFILTEQLHVQPSEVPA*SQLLSD
Trigger: GTCTGACAGCAGCTGGCTTCAGGCTGGGACTTCTGA...TGGCTGGACATGCAGCTGCTCTGTAAGGATGAAATTGCCACGGGACATGGGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR-3UTR GCA 90 bp CATGGCATCCTGGGACTGTCTCCAAGTGCCCAGCCAGCTTGTTGGCTGGAGGCTCAGCCTGAAGCCAGCTaGTGTCAGACCTTAGTCTAT +
Preference number: 2 (lower is better)
Translates to: HGILGLSPSAQPACWLEAQPEAS*CQTLVY
Trigger: ATAGACTAAGGTCTGACAGCAGCTGGCTTCAGGCTG...AGCCTCCAGCCAACAAGCTGGCTGGGCACTTGGAGACAGTCCCAGGATGCCATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR-3UTR CCA 90 bp CATGGCATCCTGGGACTGTCTCCAAGTGCCCAGCCAGCTTGTTGGCTGGAGGCTCCCTTTTATCCTTCCTaGGCATGTGGGAATTGGGGT +
Preference number: 2 (lower is better)
Translates to: HGILGLSPSAQPACWLEAPFYPS*ACGNWG
Trigger: ACCCCAATTCCCACATGCCCAGGAAGGATAAAAGGG...AGCCTCCAGCCAACAAGCTGGCTGGGCACTTGGAGACAGTCCCAGGATGCCATG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR-3UTR GCA 90 bp GACTGGGGAGGCTGGACCCCACTTATCTTCCATCCTTCTGCAGATCCAAGAGGTGGCAGTGTACCAGCCTaGCAAGAAAGGGTCTGGACA +
Preference number: 2 (lower is better)
Translates to: DWGGWTPLIFHPSADPRGGSVPA*QERVWT
Trigger: TGTCCAGACCCTTTCTTGGCAGGCTGGTACACTGCC...ACCTCTTGGATCTGCAGAAGGATGGAAGATAAGTGGGGTCCAGCCTCCCCAGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR-3UTR CCA 90 bp GGGGCTTCCCTCTTGGGTGATCACATCTTCCTGGTGTCAGCCTTGATCCGGACTTGCTATGGTATCTGCTaGACCAGGGCAGGAGTAGAG +
Preference number: 2 (lower is better)
Translates to: GASLLGDHIFLVSALIRTCYGIC*TRAGVE
Trigger: CTCTACTCCTGCCCTGGTCCAGCAGATACCATAGCA...AGTCCGGATCAAGGCTGACACCAGGAAGATGTGATCACCCAAGAGGGAAGCCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
3UTR-3UTR CCA 90 bp TCTTGTTTGGAGACAGCTCCCAGAGATGAAGGGTGCCTGCTTTTCCAGGCGCCTTTCTCTGGACCACTCTaGGAAGGGCAGTGTACCAGC +
Preference number: 2 (lower is better)
Translates to: SCLETAPRDEGCLLFQAPFSGPL*EGQCTS
Trigger: GCTGGTACACTGCCCTTCCCAGAGTGGTCCAGAGAA...AGGCGCCTGGAAAAGCAGGCACCCTTCATCTCTGGGAGCTGTCTCCAAACAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR-3UTR CCA 90 bp TGGGCCTGTCTTGTTTGGAGACAGCTCCCAGAGATGAAGGGTGCCTGCTTTTCCTTCTCTGGACCACTCTaGGAAGGGCAGTGTACCAGC +
Preference number: 2 (lower is better)
Translates to: WACLVWRQLPEMKGACFSFSGPL*EGQCTS
Trigger: GCTGGTACACTGCCCTTCCCAGAGTGGTCCAGAGAA...GGAAAAGCAGGCACCCTTCATCTCTGGGAGCTGTCTCCAAACAAGACAGGCCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR-3UTR TCA 90 bp GGTGATCACATCTTCCTGGTGTCAGCCTTGATCCGGACTCACCCAGGTCCTGCCGGAGACCGTCCTTGGTaGGTGCTAATTTCTTCTTGT +
Preference number: 2 (lower is better)
Translates to: GDHIFLVSALIRTHPGPAGDRPW*VLISSC
Trigger: ACAAGAAGAAATTAGCACTCACCAAGGACGGTCTCC...GGCAGGACCTGGGTGAGTCCGGATCAAGGCTGACACCAGGAAGATGTGATCACC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
3UTR-3UTR GCA 90 bp CTGTCTTGTTTGGAGACAGCTCCCAGAGATGAAGGGTGCCTGCTTTTCCAGGCGGAGTGCTATGGTATCTaGTGGACCAGGGCAGGAGTA +
Preference number: 2 (lower is better)
Translates to: LSCLETAPRDEGCLLFQAECYGI*WTRAGV
Trigger: TACTCCTGCCCTGGTCCAGCAGATACCATAGCACTC...CGCCTGGAAAAGCAGGCACCCTTCATCTCTGGGAGCTGTCTCCAAACAAGACAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR CAA 90 bp AGCCAGGATGCTCAGGACAGCCTCCAGAACTATTTTCATCTTCACTaGGCCCAGAGCATAGGATACCCAGCCAGGGTCACAGGTGTGTCT +
Preference number: 2 (lower is better)
Translates to: SQDAQDSLQNYFHLH*AQSIGYPARVTGVS
Trigger: AGACACACCTGTGACCCTGGCTGGGTATCCTATGCTCTGGGCCAAGTGAAGATGAAAATAGTTCTGGAGGCTGTCCTGAGCATCCTGGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
3UTR-3UTR TCA 90 bp CTTGTTTGGAGACAGCTCCCAGAGATGAAGGGTGCCTGCTTTTCCAGGCGCCTAAAGCTTGTCCTGTGTTaGTTCCAGGCCAGCCCTTTT +
Preference number: 2 (lower is better)
Translates to: LVWRQLPEMKGACFSRRLKLVLC*FQASPF
Trigger: AAAAGGGCTGGCCTGGAATCAACACAGGACAAGCTT...TAGGCGCCTGGAAAAGCAGGCACCCTTCATCTCTGGGAGCTGTCTCCAAACAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR-3UTR CCA 90 bp TGGGACTGTCTCCAAGTGCCCAGCCAGCTTGTTGGCTGGAGGCTGAATGGGCCTTCCAAGGTGCTGTTATaGTTACAACAGCTCATCTGT +
Preference number: 2 (lower is better)
Translates to: WDCLQVPSQLVGWRLNGPSKVLL*LQQLIC
Trigger: ACAGATGAGCTGTTGTAACCATAACAGCACCTTGGA...AGGCCCATTCAGCCTCCAGCCAACAAGCTGGCTGGGCACTTGGAGACAGTCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR CAA 90 bp CTTTTGCAAAAGGCTACACTTGACTCTCCTGCTACTTCTACCTTGTaGGTGCATGGCATCCTGGGACTGTCTCCAAGTGCCCAGCCAGCT +
Preference number: 2 (lower is better)
Translates to: LLQKATLDSPATSTL*VHGILGLSPSAQPA
Trigger: AGCTGGCTGGGCACTTGGAGACAGTCCCAGGATGCCATGCACCAACAAGGTAGAAGTAGCAGGAGAGTCAAGTGTAGCCTTTTGCAAAAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR-3UTR GCA 90 bp CTTGTTGGTGCATGGCATCCTGGGACTGTCTCCAAGTGCCCAGCCAGCTTGTTGAGTGCAGTTCCAAGGTaGTGTTATGGTTACAACAGC +
Preference number: 2 (lower is better)
Translates to: LVGAWHPGTVSKCPASLLSAVPR*CYGYNS
Trigger: GCTGTTGTAACCATAACAGCACCTTGGAACTGCACT...CAACAAGCTGGCTGGGCACTTGGAGACAGTCCCAGGATGCCATGCACCAACAAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR-3UTR GCA 90 bp TCTGAGGAATCATGTAAGAGGGCATTGGCTCTACCCAGCCTCAGGTGTCCCACTCTTCTACCTTGTTGGTaGATGGCATCCTGGGACTGT +
Preference number: 2 (lower is better)
Translates to: SEESCKRALALPSLRCPTLLPCW*MASWDC
Trigger: ACAGTCCCAGGATGCCATGCACCAACAAGGTAGAAG...AGTGGGACACCTGAGGCTGGGTAGAGCCAATGCCCTCTTACATGATTCCTCAGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
3UTR-3UTR GCA 90 bp CTTGTTGGCTGGAGGCTGAATGGGCCTGTCTTGTTTGGAGACAGCTCCCAGAGAAGTGCAGTTCCAAGGTaGTGTTATGGTTACAACAGC +
Preference number: 2 (lower is better)
Translates to: LVGWRLNGPVLFGDSSQRSAVPR*CYGYNS
Trigger: GCTGTTGTAACCATAACAGCACCTTGGAACTGCACT...TCTCTGGGAGCTGTCTCCAAACAAGACAGGCCCATTCAGCCTCCAGCCAACAAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR-3UTR TCA 90 bp AGAGCTAAGGCTCTTTTGCAAAAGGCTACACTTGACTCTCCTGCTACTTCTACCTTGTTGGCTGGAGGCTaGATGGGCCTGTCTTGTTTG +
Preference number: 2 (lower is better)
Translates to: RAKALLQKATLDSPATSTLLAGG*MGLSCL
Trigger: CAAACAAGACAGGCCCATTCAGCCTCCAGCCAACAA...GGTAGAAGTAGCAGGAGAGTCAAGTGTAGCCTTTTGCAAAAGAGCCTTAGCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR CAA 90 bp GTCTGGGAACAAAGGAGACCGTCCTTGGTGAGTGCTAATTTCTTCTaGTTAAAGGCCTTTTGTAGGGCCAGGAGAGAAACCGCCTCTTTT +
Preference number: 2 (lower is better)
Translates to: VWEQRRPSLVSANFF*LKAFCRARRETASF
Trigger: AAAAGAGGCGGTTTCTCTCCTGGCCCTACAAAAGGCCTTTAACAAGAAGAAATTAGCACTCACCAAGGACGGTCTCCTTTGTTCCCAGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
3UTR-3UTR TCA 90 bp AGAGCTAAGGCTCTTTTGCAAAAGGCTACACTTGACTCTCCTGCTACTTCTACCCCGTGCAAAGCCACTTaGAGCTTGTCCTGTGTTGAT +
Preference number: 2 (lower is better)
Translates to: RAKALLQKATLDSPATSTPCKAT*SLSCVD
Trigger: ATCAACACAGGACAAGCTTCAAGTGGCTTTGCACGG...GGTAGAAGTAGCAGGAGAGTCAAGTGTAGCCTTTTGCAAAAGAGCCTTAGCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR-3UTR TCA 90 bp TGTATGTCCCTAATTACACCAAGCACACAGACAAGATGCTATAGACTACAGCAGTTGTTGGCTGGAGGCTaGATGGGCCTGTCTTGTTTG +
Preference number: 2 (lower is better)
Translates to: CMSLITPSTQTRCYRLQQLLAGG*MGLSCL
Trigger: CAAACAAGACAGGCCCATTCAGCCTCCAGCCAACAA...CTGCTGTAGTCTATAGCATCTTGTCTGTGTGCTTGGTGTAATTAGGGACATACA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
3UTR CAA 90 bp TTGCTTCTAAAACATCCATTAGTCTGGGAACAAAGGAGACCGTCCTaGGTGAGTGCTAATTTCTTCTTGTTAAAGGCCTTTTGTAGGGCC +
Preference number: 2 (lower is better)
Translates to: LLLKHPLVWEQRRPS*VSANFFLLKAFCRA
Trigger: GGCCCTACAAAAGGCCTTTAACAAGAAGAAATTAGCACTCACCAAGGACGGTCTCCTTTGTTCCCAGACTAATGGATGTTTTAGAAGCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
3UTR TCA 72 bp CCCTCTTGGGTGATCACATCTTCCTGGTGTCAGCCTTaGTCCGGACTCACCCAGGTCCTGCCCTTGATGGCC +
Preference number: 3 (lower is better)
Translates to: PSWVITSSWCQP*SGLTQVLPLMA
Trigger: GGCCATCAAGGGCAGGACCTGGGTGAGTCCGGATCAAGGCTGACACCAGGAAGATGTGATCACCCAAGAGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
3UTR GCA 72 bp CTTGTTTGGAGACAGCTCCCAGAGATGAAGGGTGCCTaGTTTTCCAGGCGCCTAGAACCTGGGCCAGGGTGG +
Preference number: 3 (lower is better)
Translates to: LVWRQLPEMKGA*FSRRLEPGPGW
Trigger: CCACCCTGGCCCAGGTTCTAGGCGCCTGGAAAAGCAGGCACCCTTCATCTCTGGGAGCTGTCTCCAAACAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR CCA 72 bp GTCTCTTTAGTGGGCCATAGCCATCCAGGTGTGGCATaGATTCCCACAGCTTCCAGCTGTGGGCCCTGGACC +
Preference number: 3 (lower is better)
Translates to: VSLVGHSHPGVA*IPTASSCGPWT
Trigger: GGTCCAGGGCCCACAGCTGGAAGCTGTGGGAATCCATGCCACACCTGGATGGCTATGGCCCACTAAAGAGAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR CCA 72 bp TGCTTGGCCTCCCCTTACCTGTGGAGTCTCAGACACTaGCATCTTGCTGAGGACCTGGCTCAGTGCCCCTTC +
Preference number: 3 (lower is better)
Translates to: CLASPYLWSLRH*HLAEDLAQCPF
Trigger: GAAGGGGCACTGAGCCAGGTCCTCAGCAAGATGCCAGTGTCTGAGACTCCACAGGTAAGGGGAGGCCAAGCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR-3UTR CAA 90 bp ACCCAAGTCCAACATCAGACACTGTCTCGCCCTGCCAGTGCAGTTCCAAGGTGCGGCCACTACTTAACCTaGGGAGGCTTTGGGGTGGGG +
Preference number: 3 (lower is better)
Translates to: TQVQHQTLSRPASAVPRCGHYLT*GGFGVG
Trigger: CCCCACCCCAAAGCCTCCCAAGGTTAAGTAGTGGCC...GCACCTTGGAACTGCACTGGCAGGGCGAGACAGTGTCTGATGTTGGACTTGGGT
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
3UTR TCA 72 bp CCCTTACCTGTGGAGTCTCAGACACTGGCATCTTGCTaGGGACCTGGCTCAGTGCCCCTTCTCAGAAGTCCC +
Preference number: 3 (lower is better)
Translates to: PLPVESQTLASC*GPGSVPLLRSP
Trigger: GGGACTTCTGAGAAGGGGCACTGAGCCAGGTCCTCAGCAAGATGCCAGTGTCTGAGACTCCACAGGTAAGGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR TCA 72 bp GTCTCCAAGTGCCCAGCCAGCTTGTTGGCTGGAGGCTaGATGGGCCTGTCTTGTTTGGAGACAGCTCCCAGA +
Preference number: 3 (lower is better)
Translates to: VSKCPASLLAGG*MGLSCLETAPR
Trigger: TCTGGGAGCTGTCTCCAAACAAGACAGGCCCATTCAGCCTCCAGCCAACAAGCTGGCTGGGCACTTGGAGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR CCA 72 bp GGCCCTGGACCTTACACAGTAATTTTGGGGCTTCTCTaGACCACTCTGGGAAGGGCAGTGTACCAGCCTGCC +
Preference number: 3 (lower is better)
Translates to: GPGPYTVILGLL*TTLGRAVYQPA
Trigger: GGCAGGCTGGTACACTGCCCTTCCCAGAGTGGTCCAGAGAAGCCCCAAAATTACTGTGTAAGGTCCAGGGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR CCA 72 bp TGGGACTGTCTCCAAGTGCCCAGCCAGCTTGTTGGCTaGAGGCTGAATGGGCCTGTCTTGTTTGGAGACAGC +
Preference number: 3 (lower is better)
Translates to: WDCLQVPSQLVG*RLNGPVLFGDS
Trigger: GCTGTCTCCAAACAAGACAGGCCCATTCAGCCTCCAGCCAACAAGCTGGCTGGGCACTTGGAGACAGTCCCA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR GCA 72 bp CTGGTTAACAAATTGACATATGCCTCAGTCCAGGGCTaGTGGCCAGCTAGATGCTGGGGTGCTTGGCCTCCC +
Preference number: 3 (lower is better)
Translates to: LVNKLTYASVQG*WPARCWGAWPP
Trigger: GGGAGGCCAAGCACCCCAGCATCTAGCTGGCCAGCAGCCCTGGACTGAGGCATATGTCAATTTGTTAACCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR CCA 72 bp TGTGGAGTCTCAGACACTGGCATCTTGCTGAGGACCTaGCTCAGTGCCCCTTCTCAGAAGTCCCAGCCTGAA +
Preference number: 3 (lower is better)
Translates to: CGVSDTGILLRT*LSAPSQKSQPE
Trigger: TTCAGGCTGGGACTTCTGAGAAGGGGCACTGAGCCAGGTCCTCAGCAAGATGCCAGTGTCTGAGACTCCACA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR CCA 72 bp CTCCTGCTACTTCTACCTTGTTGGTGCATGGCATCCTaGGACTGTCTCCAAGTGCCCAGCCAGCTTGTTGGC +
Preference number: 3 (lower is better)
Translates to: LLLLLPCWCMAS*DCLQVPSQLVG
Trigger: GCCAACAAGCTGGCTGGGCACTTGGAGACAGTCCCAGGATGCCATGCACCAACAAGGTAGAAGTAGCAGGAG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR-3UTR CAA 90 bp TGGAGACAGCTCCCAGAGATGAAGGGTGCCTGCTTTTCCAGGCGCCTAGAACCTGAAGCTTGTCCTGTGTaGATTCCAGGCCAGCCCTTT +
Preference number: 3 (lower is better)
Translates to: WRQLPEMKGACFSRRLEPEACPV*IPGQPF
Trigger: AAAGGGCTGGCCTGGAATCAACACAGGACAAGCTTC...AGGTTCTAGGCGCCTGGAAAAGCAGGCACCCTTCATCTCTGGGAGCTGTCTCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR TCA 72 bp GACCTGGCTCAGTGCCCCTTCTCAGAAGTCCCAGCCTaGAGCCAGCTGCTGTCAGACCTTAGTCTATACATC +
Preference number: 3 (lower is better)
Translates to: DLAQCPFSEVPA*SQLLSDLSLYI
Trigger: GATGTATAGACTAAGGTCTGACAGCAGCTGGCTTCAGGCTGGGACTTCTGAGAAGGGGCACTGAGCCAGGTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR CCA 72 bp GTGGCATGGATTCCCACAGCTTCCAGCTGTGGGCCCTaGACCTTACACAGTAATTTTGGGGCTTCTCTGGAC +
Preference number: 3 (lower is better)
Translates to: VAWIPTASSCGP*TLHSNFGASLD
Trigger: GTCCAGAGAAGCCCCAAAATTACTGTGTAAGGTCCAGGGCCCACAGCTGGAAGCTGTGGGAATCCATGCCAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR CCA 72 bp GTTAACAAATTGACATATGCCTCAGTCCAGGGCTGCTaGCCAGCTAGATGCTGGGGTGCTTGGCCTCCCCTT +
Preference number: 3 (lower is better)
Translates to: VNKLTYASVQGC*PARCWGAWPPL
Trigger: AAGGGGAGGCCAAGCACCCCAGCATCTAGCTGGCCAGCAGCCCTGGACTGAGGCATATGTCAATTTGTTAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR CCA 72 bp GCTTGTTGGCTGGAGGCTGAATGGGCCTGTCTTGTTTaGAGACAGCTCCCAGAGATGAAGGGTGCCTGCTTT +
Preference number: 3 (lower is better)
Translates to: ACWLEAEWACLV*RQLPEMKGACF
Trigger: AAAGCAGGCACCCTTCATCTCTGGGAGCTGTCTCCAAACAAGACAGGCCCATTCAGCCTCCAGCCAACAAGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR TCA 72 bp AGAGGCATAAAGGGGCTGAGATGGAGCCTGTGTCTCTaGACCCAAGTCCAACATCAGACACTGTCTCGCCCT +
Preference number: 3 (lower is better)
Translates to: RGIKGLRWSLCL*TQVQHQTLSRP
Trigger: AGGGCGAGACAGTGTCTGATGTTGGACTTGGGTTCAGAGACACAGGCTCCATCTCAGCCCCTTTATGCCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR TCA 72 bp GTCCCCGTGCAAAGCCACTTGAAGCTTGTCCTGTGTTaGTTCCAGGCCAGCCCTTTTATCCTTCCTGGGCAT +
Preference number: 3 (lower is better)
Translates to: VPVQSHLKLVLC*FQASPFILPGH
Trigger: ATGCCCAGGAAGGATAAAAGGGCTGGCCTGGAATCAACACAGGACAAGCTTCAAGTGGCTTTGCACGGGGAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR TCA 72 bp CAGACATTTCTTAGGAGGAGGGGCTTCCCTCTTGGGTaGTCACATCTTCCTGGTGTCAGCCTTGATCCGGAC +
Preference number: 3 (lower is better)
Translates to: QTFLRRRGFPLG*SHLPGVSLDPD
Trigger: GTCCGGATCAAGGCTGACACCAGGAAGATGTGATCACCCAAGAGGGAAGCCCCTCCTCCTAAGAAATGTCTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
3UTR GCA 72 bp CCATGTCCCGTGGCAATTTCATCCTTACAGAGCAGCTaGATGTCCAGCCATCTCTCTCCCAGACAACAGAGC +
Preference number: 3 (lower is better)
Translates to: PCPVAISSLQSS*MSSHLSPRQQS
Trigger: GCTCTGTTGTCTGGGAGAGAGATGGCTGGACATGCAGCTGCTCTGTAAGGATGAAATTGCCACGGGACATGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR CCA 72 bp CCTGTGTTGATTCCAGGCCAGCCCTTTTATCCTTCCTaGGCATGTGGGAATTGGGGTCTCTTTAGTGGGCCA +
Preference number: 3 (lower is better)
Translates to: PVLIPGQPFYPS*ACGNWGLFSGP
Trigger: TGGCCCACTAAAGAGACCCCAATTCCCACATGCCCAGGAAGGATAAAAGGGCTGGCCTGGAATCAACACAGG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR GCA 72 bp CCAAGTCCAACATCAGACACTGTCTCGCCCTGCCAGTaGAGTTCCAAGGTGCTGTTATGGTTACAACAGCTC +
Preference number: 3 (lower is better)
Translates to: PSPTSDTVSPCQ*SSKVLLWLQQL
Trigger: GAGCTGTTGTAACCATAACAGCACCTTGGAACTGCACTGGCAGGGCGAGACAGTGTCTGATGTTGGACTTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR CCA 72 bp TACCCAGCCAGGGTCACAGGTGTGTCTGGTGGTGCATaGATGTATGTCCCTAATTACACCAAGCACACAGAC +
Preference number: 3 (lower is better)
Translates to: YPARVTGVSGGA*MYVPNYTKHTD
Trigger: GTCTGTGTGCTTGGTGTAATTAGGGACATACATCCATGCACCACCAGACACACCTGTGACCCTGGCTGGGTA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
3UTR GCA 72 bp CTGAACCCAAGTCCAACATCAGACACTGTCTCGCCCTaGCAGTGCAGTTCCAAGGTGCTGTTATGGTTACAA +
Preference number: 3 (lower is better)
Translates to: LNPSPTSDTVSP*QCSSKVLLWLQ
Trigger: TTGTAACCATAACAGCACCTTGGAACTGCACTGGCAGGGCGAGACAGTGTCTGATGTTGGACTTGGGTTCAG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR CCA 72 bp AAGAAAGGGTCTGGACATAAGGCTCAGAGAGTGCTATaGTATCTGCTGGACCAGGGCAGGAGTAGAGGCATA +
Preference number: 3 (lower is better)
Translates to: KKGSGHKAQRVL*YLLDQGRSRGI
Trigger: TATGCCTCTACTCCTGCCCTGGTCCAGCAGATACCATAGCACTCTCTGAGCCTTATGTCCAGACCCTTTCTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR-3UTR CAA 90 bp AGATGCTGGGGTGCTTGGCCTCCCCTTACCTGTGGAGTCTCAGACACTGGCATCAGTGCTAATTTCTTCTaGTTAAAGGCCTTTTGTAGG +
Preference number: 3 (lower is better)
Translates to: RCWGAWPPLTCGVSDTGISANFF*LKAFCR
Trigger: CCTACAAAAGGCCTTTAACAAGAAGAAATTAGCACT...GATGCCAGTGTCTGAGACTCCACAGGTAAGGGGAGGCCAAGCACCCCAGCATCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
3UTR TCA 72 bp CAGCTGCTGTCAGACCTTAGTCTATACATCTGTATATaGGACGCAGAACCATGCATGTCCCCAGCAAAGCCA +
Preference number: 3 (lower is better)
Translates to: QLLSDLSLYICI*DAEPCMSPAKP
Trigger: TGGCTTTGCTGGGGACATGCATGGTTCTGCGTCTCATATACAGATGTATAGACTAAGGTCTGACAGCAGCTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR TCA 72 bp GTTCTTTTATTGAAGTGTGGAGGGTGGGTGGCATTCTaGCAGATATTTGGGGCACACGACTTGTTTCCACAT +
Preference number: 3 (lower is better)
Translates to: VLLLKCGGWVAF*QIFGAHDLFPH
Trigger: ATGTGGAAACAAGTCGTGTGCCCCAAATATCTGTCAGAATGCCACCCACCCTCCACACTTCAATAAAAGAAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
3UTR GCA 72 bp TGTATGTCCCTAATTACACCAAGCACACAGACAAGATaGTATAGACTACAGCAGAGACTTCTGGTGACTGCC +
Preference number: 3 (lower is better)
Translates to: CMSLITPSTQTR*YRLQQRLLVTA
Trigger: GGCAGTCACCAGAAGTCTCTGCTGTAGTCTATAGCATCTTGTCTGTGTGCTTGGTGTAATTAGGGACATACA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
3UTR GCA 72 bp TGGTTACAACAGCTCATCTGTCCAGGCCCAATGTGGTaGTTTCATTTCTTGCTTCTAAAACATCCATTAGTC +
Preference number: 3 (lower is better)
Translates to: WLQQLICPGPMW*FHFLLLKHPLV
Trigger: GACTAATGGATGTTTTAGAAGCAAGAAATGAAAGCACCACATTGGGCCTGGACAGATGAGCTGTTGTAACCA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR TCA 72 bp TCTTTATTGAGACATATGAGGAGGGTGTTCTTTTATTaGAGTGTGGAGGGTGGGTGGCATTCTGACAGATAT +
Preference number: 3 (lower is better)
Translates to: SLLRHMRRVFFY*SVEGGWHSDRY
Trigger: ATATCTGTCAGAATGCCACCCACCCTCCACACTTCAATAAAAGAACACCCTCCTCATATGTCTCAATAAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
CDS-3UTR CCA 90 bp TCCAGGGCTGCTGGCCAGCTAGATGCTGGGGTGCTTGGCCTCCCCTTACCTGTGGTGGACAGGAAGACCTaGCGGAAGTTGGCGGAGACG +
Preference number: 4 (lower is better)
Translates to: SRAAGQLDAGVLGLPLPVVDRKT*RKLAET
Trigger: CGTCTCCGCCAACTTCCGCCAGGTCTTCCTGTCCAC...CACAGGTAAGGGGAGGCCAAGCACCCCAGCATCTAGCTGGCCAGCAGCCCTGGA
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR GCA 90 bp AGATGCTGGGGTGCTTGGCCTCCCCTTACCTGTGGAGTCTCAGACACTGGCATCGCTGGCCATCGGCACTaGGGTTCTGCAGGCCCATGG +
Preference number: 4 (lower is better)
Translates to: RCWGAWPPLTCGVSDTGIAGHRH*GSAGPW
Trigger: CCATGGGCCTGCAGAACCGCAGTGCCGATGGCCAGC...GATGCCAGTGTCTGAGACTCCACAGGTAAGGGGAGGCCAAGCACCCCAGCATCT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CCA 90 bp CCAGCAAAGCCACCTGGACTGGGGAGGCTGGACCCCACTTATCTTCCATCCTTCCCCTGCTCGGCAGCCTaGTGCACCATGACGGTCAGT +
Preference number: 4 (lower is better)
Translates to: PAKPPGLGRLDPTYLPSFPCSAA*CTMTVS
Trigger: ACTGACCGTCATGGTGCACCAGGCTGCCGAGCAGGG...GAAGGATGGAAGATAAGTGGGGTCCAGCCTCCCCAGTCCAGGTGGCTTTGCTGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR GCA 90 bp TGGAGACAGCTCCCAGAGATGAAGGGTGCCTGCTTTTCCAGGCGCCTAGAACCTTGTCCACCGTGGGTGTaGACACCAGGCCACCAGGGT +
Preference number: 4 (lower is better)
Translates to: WRQLPEMKGACFSRRLEPCPPWV*TPGHQG
Trigger: ACCCTGGTGGCCTGGTGTGCACACCCACGGTGGACA...AGGTTCTAGGCGCCTGGAAAAGCAGGCACCCTTCATCTCTGGGAGCTGTCTCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CCA 90 bp TGGAGACAGCTCCCAGAGATGAAGGGTGCCTGCTTTTCCAGGCGCCTAGAACCTCCCGGGTGGCGCTGGTaGAAAACGCATGGTTGCTGG +
Preference number: 4 (lower is better)
Translates to: WRQLPEMKGACFSRRLEPPGWRW*KTHGCW
Trigger: CCAGCAACCATGCGTTTTCCACCAGCGCCACCCGGG...AGGTTCTAGGCGCCTGGAAAAGCAGGCACCCTTCATCTCTGGGAGCTGTCTCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR TCA 90 bp CCTGGACTGGGGAGGCTGGACCCCACTTATCTTCCATCCTTCTGCAGATCCAAGTGGCCAGCAGCAGGATaGGCAGGTCAGACAGTGCCA +
Preference number: 4 (lower is better)
Translates to: PGLGRLDPTYLPSFCRSKWPAAG*AGQTVP
Trigger: TGGCACTGTCTGACCTGCTCATCCTGCTGCTGGCCA...CTTGGATCTGCAGAAGGATGGAAGATAAGTGGGGTCCAGCCTCCCCAGTCCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR TCA 90 bp GGTGTGGCATGGATTCCCACAGCTTCCAGCTGTGGGCCCTGGACCTTACACAGTTCAGGCTGGCTACATTaGGGGCTGTGGCATAGGTGC +
Preference number: 4 (lower is better)
Translates to: GVAWIPTASSCGPWTLHSSGWLH*GLWHRC
Trigger: GCACCTATGCCACAGCCCTCAATGTAGCCAGCCTGA...ACTGTGTAAGGTCCAGGGCCCACAGCTGGAAGCTGTGGGAATCCATGCCACACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR GCA 90 bp CATGGCATCCTGGGACTGTCTCCAAGTGCCCAGCCAGCTTGTTGGCTGGAGGCTCCGAGTTGCCCACAGTaGCCACCACAAAAAGTGCCA +
Preference number: 4 (lower is better)
Translates to: HGILGLSPSAQPACWLEAPSCPQ*PPQKVP
Trigger: TGGCACTTTTTGTGGTGGGCACTGTGGGCAACTCGG...AGCCTCCAGCCAACAAGCTGGCTGGGCACTTGGAGACAGTCCCAGGATGCCATG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR GCA 90 bp CTAGATGCTGGGGTGCTTGGCCTCCCCTTACCTGTGGAGTCTCAGACACTGGCAAGGCTGTCACCGAGTTaGCCACAGTGCCCACCACAA +
Preference number: 4 (lower is better)
Translates to: LDAGVLGLPLPVESQTLARLSPS*PQCPPQ
Trigger: TTGTGGTGGGCACTGTGGGCAACTCGGTGACAGCCT...TGCCAGTGTCTGAGACTCCACAGGTAAGGGGAGGCCAAGCACCCCAGCATCTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR GCA 90 bp CCAGCAAAGCCACCTGGACTGGGGAGGCTGGACCCCACTTATCTTCCATCCTTCTCGGCACTGCGGTTCTaGAGGCCCATGGTGAAAAGC +
Preference number: 4 (lower is better)
Translates to: PAKPPGLGRLDPTYLPSFSALRF*RPMVKS
Trigger: GCTTTTCACCATGGGCCTGCAGAACCGCAGTGCCGA...GAAGGATGGAAGATAAGTGGGGTCCAGCCTCCCCAGTCCAGGTGGCTTTGCTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CCA 90 bp CACTGGCATCTTGCTGAGGACCTGGCTCAGTGCCCCTTCTCAGAAGTCCCAGCCCCAAAGGCCCAGGGATaGTGCACCCAGATGAAGTTG +
Preference number: 4 (lower is better)
Translates to: HWHLAEDLAQCPFSEVPAPKAQG*CTQMKL
Trigger: CAACTTCATCTGGGTGCACCATCCCTGGGCCTTTGG...GGCTGGGACTTCTGAGAAGGGGCACTGAGCCAGGTCCTCAGCAAGATGCCAGTG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CCA 90 bp CTAGATGCTGGGGTGCTTGGCCTCCCCTTACCTGTGGAGTCTCAGACACTGGCACTTCCTGGAGAACGTTaGCCTCTTCTTTCGGCGGCG +
Preference number: 4 (lower is better)
Translates to: LDAGVLGLPLPVESQTLALPGER*PLLSAA
Trigger: CGCCGCCGAAAGAAGAGGCCAACGTTCTCCAGGAAG...TGCCAGTGTCTGAGACTCCACAGGTAAGGGGAGGCCAAGCACCCCAGCATCTAG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR TCA 90 bp CCTGGACTGGGGAGGCTGGACCCCACTTATCTTCCATCCTTCTGCAGATCCAAGTCAGGCTGGCTACATTaGGGGCTGTGGCATAGGTGC +
Preference number: 4 (lower is better)
Translates to: PGLGRLDPTYLPSFCRSKSGWLH*GLWHRC
Trigger: GCACCTATGCCACAGCCCTCAATGTAGCCAGCCTGA...CTTGGATCTGCAGAAGGATGGAAGATAAGTGGGGTCCAGCCTCCCCAGTCCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR TCA 90 bp CCAGCAAAGCCACCTGGACTGGGGAGGCTGGACCCCACTTATCTTCCATCCTTCTCTGCAGGCCCATGGTaGAAAGCATGGGTACAGCCA +
Preference number: 4 (lower is better)
Translates to: PAKPPGLGRLDPTYLPSFSAGPW*KAWVQP
Trigger: TGGCTGTACCCATGCTTTTCACCATGGGCCTGCAGA...GAAGGATGGAAGATAAGTGGGGTCCAGCCTCCCCAGTCCAGGTGGCTTTGCTGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR TCA 90 bp CATGGCATCCTGGGACTGTCTCCAAGTGCCCAGCCAGCTTGTTGGCTGGAGGCTGATGGGATTGATGGCTaGGCTGACGTAGAAGAGAGC +
Preference number: 4 (lower is better)
Translates to: HGILGLSPSAQPACWLEADGIDG*ADVEES
Trigger: GCTCTCTTCTACGTCAGCTCAGCCATCAATCCCATC...AGCCTCCAGCCAACAAGCTGGCTGGGCACTTGGAGACAGTCCCAGGATGCCATG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR GCA 90 bp GCTTGTTGGCTGGAGGCTGAATGGGCCTGTCTTGTTTGGAGACAGCTCCCAGAGGAGCAGGTCAGACAGTaGCAGGCTACCCAGGTGGTA +
Preference number: 4 (lower is better)
Translates to: ACWLEAEWACLVWRQLPEEQVRQ*QATQVV
Trigger: TACCACCTGGGTAGCCTGGCACTGTCTGACCTGCTC...CTCTGGGAGCTGTCTCCAAACAAGACAGGCCCATTCAGCCTCCAGCCAACAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR GCA 90 bp GTCCAACATCAGACACTGTCTCGCCCTGCCAGTGCAGTTCCAAGGTGCTGTTATTGTCCACCGTGGGTGTaGACACCAGGCCACCAGGGT +
Preference number: 4 (lower is better)
Translates to: VQHQTLSRPASAVPRCCYCPPWV*TPGHQG
Trigger: ACCCTGGTGGCCTGGTGTGCACACCCACGGTGGACA...ATAACAGCACCTTGGAACTGCACTGGCAGGGCGAGACAGTGTCTGATGTTGGAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR GCA 90 bp CCTGGGCATGTGGGAATTGGGGTCTCTTTAGTGGGCCATAGCCATCCAGGTGTGTGCTCGGCAGCCTGGTaGACCATGACGGTCAGTTTG +
Preference number: 4 (lower is better)
Translates to: PGHVGIGVSLVGHSHPGVCSAAW*TMTVSL
Trigger: CAAACTGACCGTCATGGTGCACCAGGCTGCCGAGCA...CACACCTGGATGGCTATGGCCCACTAAAGAGACCCCAATTCCCACATGCCCAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR GCA 90 bp CATAAAGGGGCTGAGATGGAGCCTGTGTCTCTGAACCCAAGTCCAACATCAGACTGTGGGTGCCCACGGTaGACACACCACGGCCCTGCT +
Preference number: 4 (lower is better)
Translates to: HKGAEMEPVSLNPSPTSDCGCPR*THHGPA
Trigger: AGCAGGGCCGTGGTGTGTGCACCGTGGGCACCCACA...GTCTGATGTTGGACTTGGGTTCAGAGACACAGGCTCCATCTCAGCCCCTTTATG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CCA 90 bp TCTGAGGAATCATGTAAGAGGGCATTGGCTCTACCCAGCCTCAGGTGTCCCACTCCCTGCTCGGCAGCCTaGTGCACCATGACGGTCAGT +
Preference number: 4 (lower is better)
Translates to: SEESCKRALALPSLRCPTPCSAA*CTMTVS
Trigger: ACTGACCGTCATGGTGCACCAGGCTGCCGAGCAGGG...AGTGGGACACCTGAGGCTGGGTAGAGCCAATGCCCTCTTACATGATTCCTCAGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
CDS-3UTR CCA 90 bp GCTTGTTGGCTGGAGGCTGAATGGGCCTGTCTTGTTTGGAGACAGCTCCCAGAGAGAGGCAAGCCAGTGTaGACAGGAAGACCTGGCGGA +
Preference number: 4 (lower is better)
Translates to: ACWLEAEWACLVWRQLPERGKPV*TGRPGG
Trigger: TCCGCCAGGTCTTCCTGTCCACACTGGCTTGCCTCT...CTCTGGGAGCTGTCTCCAAACAAGACAGGCCCATTCAGCCTCCAGCCAACAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR CAA 72 bp CCTCCCCTTACCTGTGGAGTCTCAGACACTGGCATCTaGCTGAGGACCTGGCTCAGTGCCCCTTCTCAGAAG +
Preference number: 4 (lower is better)
Translates to: PPLTCGVSDTGI*LRTWLSAPSQK
Trigger: CTTCTGAGAAGGGGCACTGAGCCAGGTCCTCAGCAAGATGCCAGTGTCTGAGACTCCACAGGTAAGGGGAGG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR CAA 72 bp TCCCTCTTGGGTGATCACATCTTCCTGGTGTCAGCCTaGATCCGGACTCACCCAGGTCCTGCCCTTGATGGC +
Preference number: 4 (lower is better)
Translates to: SLLGDHIFLVSA*IRTHPGPALDG
Trigger: GCCATCAAGGGCAGGACCTGGGTGAGTCCGGATCAAGGCTGACACCAGGAAGATGTGATCACCCAAGAGGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
CDS-3UTR TCA 90 bp AAGCCACCTGGACTGGGGAGGCTGGACCCCACTTATCTTCCATCCTTCTGCAGAAGATATAGCAGAACATaGGGCGCCGCACGTGGTAGG +
Preference number: 4 (lower is better)
Translates to: KPPGLGRLDPTYLPSFCRRYSRT*GAARGR
Trigger: CCTACCACGTGCGGCGCCTCATGTTCTGCTATATCT...TCTGCAGAAGGATGGAAGATAAGTGGGGTCCAGCCTCCCCAGTCCAGGTGGCTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR GCA 90 bp GCTTGTTGGCTGGAGGCTGAATGGGCCTGTCTTGTTTGGAGACAGCTCCCAGAGTGTTCACGTCCAGGTTaGTGTTGGGCTCCAGGATGG +
Preference number: 4 (lower is better)
Translates to: ACWLEAEWACLVWRQLPECSRPG*CWAPGW
Trigger: CCATCCTGGAGCCCAACAGCAACCTGGACGTGAACA...CTCTGGGAGCTGTCTCCAAACAAGACAGGCCCATTCAGCCTCCAGCCAACAAGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR GCA 90 bp CCTCCCATGTCCCGTGGCAATTTCATCCTTACAGAGCAGCTGCATGTCCAGCCAAGGCTGTCACCGAGTTaGCCACAGTGCCCACCACAA +
Preference number: 4 (lower is better)
Translates to: PPMSRGNFILTEQLHVQPRLSPS*PQCPPQ
Trigger: TTGTGGTGGGCACTGTGGGCAACTCGGTGACAGCCT...TGGCTGGACATGCAGCTGCTCTGTAAGGATGAAATTGCCACGGGACATGGGAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR GCA 90 bp CTGTCTTGTTTGGAGACAGCTCCCAGAGATGAAGGGTGCCTGCTTTTCCAGGCGGGTGGTAATGCACAGTaGTCTGCAGGCTCTGCAGCG +
Preference number: 4 (lower is better)
Translates to: LSCLETAPRDEGCLLFQAGGNAQ*SAGSAA
Trigger: CGCTGCAGAGCCTGCAGAGCACTGTGCATTACCACC...CGCCTGGAAAAGCAGGCACCCTTCATCTCTGGGAGCTGTCTCCAAACAAGACAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR GCA 90 bp GATGGAGCCTGTGTCTCTGAACCCAAGTCCAACATCAGACACTGTCTCGCCCTGTCGGCACTGCGGTTCTaGAGGCCCATGGTGAAAAGC +
Preference number: 4 (lower is better)
Translates to: DGACVSEPKSNIRHCLALSALRF*RPMVKS
Trigger: GCTTTTCACCATGGGCCTGCAGAACCGCAGTGCCGA...CAGGGCGAGACAGTGTCTGATGTTGGACTTGGGTTCAGAGACACAGGCTCCATC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR GCA 90 bp TCTTGTTTGGAGACAGCTCCCAGAGATGAAGGGTGCCTGCTTTTCCAGGCGCCTTGCTCGGCAGCCTGGTaGACCATGACGGTCAGTTTG +
Preference number: 4 (lower is better)
Translates to: SCLETAPRDEGCLLFQAPCSAAW*TMTVSL
Trigger: CAAACTGACCGTCATGGTGCACCAGGCTGCCGAGCA...AGGCGCCTGGAAAAGCAGGCACCCTTCATCTCTGGGAGCTGTCTCCAAACAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CCA 90 bp TCTGAGGAATCATGTAAGAGGGCATTGGCTCTACCCAGCCTCAGGTGTCCCACTGTGGACAGGAAGACCTaGCGGAAGTTGGCGGAGACG +
Preference number: 4 (lower is better)
Translates to: SEESCKRALALPSLRCPTVDRKT*RKLAET
Trigger: CGTCTCCGCCAACTTCCGCCAGGTCTTCCTGTCCAC...AGTGGGACACCTGAGGCTGGGTAGAGCCAATGCCCTCTTACATGATTCCTCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
CDS-3UTR CCA 90 bp TCTTGTTTGGAGACAGCTCCCAGAGATGAAGGGTGCCTGCTTTTCCAGGCGCCTAGAGGCAAGCCAGTGTaGACAGGAAGACCTGGCGGA +
Preference number: 4 (lower is better)
Translates to: SCLETAPRDEGCLLFQAPRGKPV*TGRPGG
Trigger: TCCGCCAGGTCTTCCTGTCCACACTGGCTTGCCTCT...AGGCGCCTGGAAAAGCAGGCACCCTTCATCTCTGGGAGCTGTCTCCAAACAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR TCA 90 bp TCTTGTTTGGAGACAGCTCCCAGAGATGAAGGGTGCCTGCTTTTCCAGGCGCCTAGATATAGCAGAACATaGGGCGCCGCACGTGGTAGG +
Preference number: 4 (lower is better)
Translates to: SCLETAPRDEGCLLFQAPRYSRT*GAARGR
Trigger: CCTACCACGTGCGGCGCCTCATGTTCTGCTATATCT...AGGCGCCTGGAAAAGCAGGCACCCTTCATCTCTGGGAGCTGTCTCCAAACAAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR TCA 90 bp CCTGGGCATGTGGGAATTGGGGTCTCTTTAGTGGGCCATAGCCATCCAGGTGTGGATGGGATTGATGGCTaGGCTGACGTAGAAGAGAGC +
Preference number: 4 (lower is better)
Translates to: PGHVGIGVSLVGHSHPGVDGIDG*ADVEES
Trigger: GCTCTCTTCTACGTCAGCTCAGCCATCAATCCCATC...CACACCTGGATGGCTATGGCCCACTAAAGAGACCCCAATTCCCACATGCCCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR GCA 90 bp CAGCTTCCAGCTGTGGGCCCTGGACCTTACACAGTAATTTTGGGGCTTCTCTGGTGTTCACGTCCAGGTTaGTGTTGGGCTCCAGGATGG +
Preference number: 4 (lower is better)
Translates to: QLPAVGPGPYTVILGLLWCSRPG*CWAPGW
Trigger: CCATCCTGGAGCCCAACAGCAACCTGGACGTGAACA...CCAGAGAAGCCCCAAAATTACTGTGTAAGGTCCAGGGCCCACAGCTGGAAGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR GCA 90 bp CATAAAGGGGCTGAGATGGAGCCTGTGTCTCTGAACCCAAGTCCAACATCAGACGTGCTCTGCAGGCTCTaGAGCGACTTCTTCCGCGCT +
Preference number: 4 (lower is better)
Translates to: HKGAEMEPVSLNPSPTSDVLCRL*SDFFRA
Trigger: AGCGCGGAAGAAGTCGCTGCAGAGCCTGCAGAGCAC...GTCTGATGTTGGACTTGGGTTCAGAGACACAGGCTCCATCTCAGCCCCTTTATG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR GCA 90 bp CCTGGGCATGTGGGAATTGGGGTCTCTTTAGTGGGCCATAGCCATCCAGGTGTGAAGGCCCAGGGATGGTaGACCCAGATGAAGTTGTAC +
Preference number: 4 (lower is better)
Translates to: PGHVGIGVSLVGHSHPGVKAQGW*TQMKLY
Trigger: GTACAACTTCATCTGGGTGCACCATCCCTGGGCCTT...CACACCTGGATGGCTATGGCCCACTAAAGAGACCCCAATTCCCACATGCCCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR GCA 90 bp ACCCAAGTCCAACATCAGACACTGTCTCGCCCTGCCAGTGCAGTTCCAAGGTGCAAGGCCCAGGGATGGTaGACCCAGATGAAGTTGTAC +
Preference number: 4 (lower is better)
Translates to: TQVQHQTLSRPASAVPRCKAQGW*TQMKLY
Trigger: GTACAACTTCATCTGGGTGCACCATCCCTGGGCCTT...GCACCTTGGAACTGCACTGGCAGGGCGAGACAGTGTCTGATGTTGGACTTGGGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR GCA 90 bp GGTGATCACATCTTCCTGGTGTCAGCCTTGATCCGGACTCACCCAGGTCCTGCCCATGGTTGCTGGACATaGTGTTTGGCTTCCTGGAGA +
Preference number: 4 (lower is better)
Translates to: GDHIFLVSALIRTHPGPAHGCWT*CLASWR
Trigger: TCTCCAGGAAGCCAAACAGCATGTCCAGCAACCATG...GGCAGGACCTGGGTGAGTCCGGATCAAGGCTGACACCAGGAAGATGTGATCACC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
CDS-3UTR CCA 90 bp AAGCCACCTGGACTGGGGAGGCTGGACCCCACTTATCTTCCATCCTTCTGCAGATGCTCTAAACTGTTGTaGGTGCCCACGGTGCACACA +
Preference number: 4 (lower is better)
Translates to: KPPGLGRLDPTYLPSFCRCSKLL*VPTVHT
Trigger: TGTGTGCACCGTGGGCACCCACAACAGTTTAGAGCA...TCTGCAGAAGGATGGAAGATAAGTGGGGTCCAGCCTCCCCAGTCCAGGTGGCTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CCA 90 bp CTCCAGAACTATTTTCATCTTCACTTGGCCCAGAGCATAGGATACCCAGCCAGGCCCGGGTGGCGCTGGTaGAAAACGCATGGTTGCTGG +
Preference number: 4 (lower is better)
Translates to: LQNYFHLHLAQSIGYPARPGWRW*KTHGCW
Trigger: CCAGCAACCATGCGTTTTCCACCAGCGCCACCCGGG...CCTGGCTGGGTATCCTATGCTCTGGGCCAAGTGAAGATGAAAATAGTTCTGGAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
CDS-3UTR TCA 90 bp TGGACCCCACTTATCTTCCATCCTTCTGCAGATCCAAGAGGTGAAGGTCCCCGTTCTGCAGGCCCATGGTaGAAAGCATGGGTACAGCCA +
Preference number: 4 (lower is better)
Translates to: WTPLIFHPSADPRGEGPRSAGPW*KAWVQP
Trigger: TGGCTGTACCCATGCTTTTCACCATGGGCCTGCAGA...ACGGGGACCTTCACCTCTTGGATCTGCAGAAGGATGGAAGATAAGTGGGGTCCA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR GCA 90 bp CACTGGCATCTTGCTGAGGACCTGGCTCAGTGCCCCTTCTCAGAAGTCCCAGCCTGGATTCTGAGGAATTaGCAGAACCATTGCTCAAGC +
Preference number: 4 (lower is better)
Translates to: HWHLAEDLAQCPFSEVPAWILRN*QNHCSS
Trigger: GCTTGAGCAATGGTTCTGGCAATTCCTCAGAATCCA...GGCTGGGACTTCTGAGAAGGGGCACTGAGCCAGGTCCTCAGCAAGATGCCAGTG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR GCA 90 bp CATGGATTCCCACAGCTTCCAGCTGTGGGCCCTGGACCTTACACAGTAATTTTGGAGCAGGTCAGACAGTaGCAGGCTACCCAGGTGGTA +
Preference number: 4 (lower is better)
Translates to: HGFPQLPAVGPGPYTVILEQVRQ*QATQVV
Trigger: TACCACCTGGGTAGCCTGGCACTGTCTGACCTGCTC...CAAAATTACTGTGTAAGGTCCAGGGCCCACAGCTGGAAGCTGTGGGAATCCATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR GCA 90 bp AGGCTCTTTTGCAAAAGGCTACACTTGACTCTCCTGCTACTTCTACCTTGTTGGTGTGGGTGCCCACGGTaGACACACCACGGCCCTGCT +
Preference number: 4 (lower is better)
Translates to: RLFCKRLHLTLLLLLPCWCGCPR*THHGPA
Trigger: AGCAGGGCCGTGGTGTGTGCACCGTGGGCACCCACA...CCAACAAGGTAGAAGTAGCAGGAGAGTCAAGTGTAGCCTTTTGCAAAAGAGCCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR GCA 90 bp GCTTGTTGGCTGGAGGCTGAATGGGCCTGTCTTGTTTGGAGACAGCTCCCAGAGCATGGTTGCTGGACATaGTGTTTGGCTTCCTGGAGA +
Preference number: 4 (lower is better)
Translates to: ACWLEAEWACLVWRQLPEHGCWT*CLASWR
Trigger: TCTCCAGGAAGCCAAACAGCATGTCCAGCAACCATG...CTCTGGGAGCTGTCTCCAAACAAGACAGGCCCATTCAGCCTCCAGCCAACAAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CCA 90 bp AAGCCACCTGGACTGGGGAGGCTGGACCCCACTTATCTTCCATCCTTCTGCAGATGTTGGGCTCCAGGATaGATTCTGAGGAATTGCCAG +
Preference number: 4 (lower is better)
Translates to: KPPGLGRLDPTYLPSFCRCWAPG*ILRNCQ
Trigger: CTGGCAATTCCTCAGAATCCATCCTGGAGCCCAACA...TCTGCAGAAGGATGGAAGATAAGTGGGGTCCAGCCTCCCCAGTCCAGGTGGCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CCA 90 bp CATAAAGGGGCTGAGATGGAGCCTGTGTCTCTGAACCCAAGTCCAACATCAGACCTTCCTGGAGAACGTTaGCCTCTTCTTTCGGCGGCG +
Preference number: 4 (lower is better)
Translates to: HKGAEMEPVSLNPSPTSDLPGER*PLLSAA
Trigger: CGCCGCCGAAAGAAGAGGCCAACGTTCTCCAGGAAG...GTCTGATGTTGGACTTGGGTTCAGAGACACAGGCTCCATCTCAGCCCCTTTATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR CAA 72 bp GGCCACCACATTTCTGAGGAATCATGTAAGAGGGCATaGGCTCTACCCAGCCTCAGGTGTCCCACTTCTGTG +
Preference number: 4 (lower is better)
Translates to: GHHISEESCKRA*ALPSLRCPTSV
Trigger: CACAGAAGTGGGACACCTGAGGCTGGGTAGAGCCAATGCCCTCTTACATGATTCCTCAGAAATGTGGTGGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
CDS-3UTR TCA 90 bp AAGCCACCTGGACTGGGGAGGCTGGACCCCACTTATCTTCCATCCTTCTGCAGACTCCAGGATGGATTCTaGGGAATTGCCAGAACCATT +
Preference number: 4 (lower is better)
Translates to: KPPGLGRLDPTYLPSFCRLQDGF*GIARTI
Trigger: AATGGTTCTGGCAATTCCTCAGAATCCATCCTGGAG...TCTGCAGAAGGATGGAAGATAAGTGGGGTCCAGCCTCCCCAGTCCAGGTGGCTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR TCA 90 bp TTGAACACCCTCCCCATTTCTCTGGGTGACCACAGATACCCTGACTTTTCACCCGATGGTGCACCCAGATaGAGTTGTACAGCTCCACGG +
Preference number: 4 (lower is better)
Translates to: LNTLPISLGDHRYPDFSPDGAPR*SCTAPR
Trigger: CCGTGGAGCTGTACAACTTCATCTGGGTGCACCATC...GGGTGAAAAGTCAGGGTATCTGTGGTCACCCAGAGAAATGGGGAGGGTGTTCAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
CDS-3UTR TCA 90 bp GGTGTGGCATGGATTCCCACAGCTTCCAGCTGTGGGCCCTGGACCTTACACAGTTGTTTAGGATGGAGATaGTCAGCATGGGAAACAGGA +
Preference number: 4 (lower is better)
Translates to: GVAWIPTASSCGPWTLHSCLGWR*SAWETG
Trigger: TCCTGTTTCCCATGCTGATCATCTCCATCCTAAACA...ACTGTGTAAGGTCCAGGGCCCACAGCTGGAAGCTGTGGGAATCCATGCCACACC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR TCA 90 bp TGGGACTGTCTCCAAGTGCCCAGCCAGCTTGTTGGCTGGAGGCTGAATGGGCCTAGTCCACTGTTCATCTaGGATATAGCAGAACATGAG +
Preference number: 4 (lower is better)
Translates to: WDCLQVPSQLVGWRLNGPSPLFI*DIAEHE
Trigger: CTCATGTTCTGCTATATCTCAGATGAACAGTGGACT...AGGCCCATTCAGCCTCCAGCCAACAAGCTGGCTGGGCACTTGGAGACAGTCCCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CCA 90 bp TGGACCCCACTTATCTTCCATCCTTCTGCAGATCCAAGAGGTGAAGGTCCCCGTAGACCTGGCGGAAGTTaGCGGAGACGAGGTTGTAAA +
Preference number: 4 (lower is better)
Translates to: WTPLIFHPSADPRGEGPRRPGGS*RRRGCK
Trigger: TTTACAACCTCGTCTCCGCCAACTTCCGCCAGGTCT...ACGGGGACCTTCACCTCTTGGATCTGCAGAAGGATGGAAGATAAGTGGGGTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CCA 90 bp CTTGTTGGTGCATGGCATCCTGGGACTGTCTCCAAGTGCCCAGCCAGCTTGTTGAAAACGCATGGTTGCTaGACATGCTGTTTGGCTTCC +
Preference number: 4 (lower is better)
Translates to: LVGAWHPGTVSKCPASLLKTHGC*TCCLAS
Trigger: GGAAGCCAAACAGCATGTCCAGCAACCATGCGTTTT...CAACAAGCTGGCTGGGCACTTGGAGACAGTCCCAGGATGCCATGCACCAACAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CCA 90 bp CCCAAGTCCAACATCAGACACTGTCTCGCCCTGCCAGTGCAGTTCCAAGGTGCTAAAACGCATGGTTGCTaGACATGCTGTTTGGCTTCC +
Preference number: 4 (lower is better)
Translates to: PKSNIRHCLALPVQFQGAKTHGC*TCCLAS
Trigger: GGAAGCCAAACAGCATGTCCAGCAACCATGCGTTTT...AGCACCTTGGAACTGCACTGGCAGGGCGAGACAGTGTCTGATGTTGGACTTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR CAA 72 bp CCATGCAGACATTTCTTAGGAGGAGGGGCTTCCCTCTaGGGTGATCACATCTTCCTGGTGTCAGCCTTGATC +
Preference number: 4 (lower is better)
Translates to: PCRHFLGGGASL*GDHIFLVSALI
Trigger: GATCAAGGCTGACACCAGGAAGATGTGATCACCCAAGAGGGAAGCCCCTCCTCCTAAGAAATGTCTGCATGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
3UTR CAA 72 bp GCTCAGGACAGCCTCCAGAACTATTTTCATCTTCACTaGGCCCAGAGCATAGGATACCCAGCCAGGGTCACA +
Preference number: 4 (lower is better)
Translates to: AQDSLQNYFHLH*AQSIGYPARVT
Trigger: TGTGACCCTGGCTGGGTATCCTATGCTCTGGGCCAAGTGAAGATGAAAATAGTTCTGGAGGCTGTCCTGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
CDS-3UTR TCA 90 bp AAGCCACCTGGACTGGGGAGGCTGGACCCCACTTATCTTCCATCCTTCTGCAGATGTTTAGGATGGAGATaGTCAGCATGGGAAACAGGA +
Preference number: 4 (lower is better)
Translates to: KPPGLGRLDPTYLPSFCRCLGWR*SAWETG
Trigger: TCCTGTTTCCCATGCTGATCATCTCCATCCTAAACA...TCTGCAGAAGGATGGAAGATAAGTGGGGTCCAGCCTCCCCAGTCCAGGTGGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR GCA 90 bp AGGCTCTTTTGCAAAAGGCTACACTTGACTCTCCTGCTACTTCTACCTTGTTGGGTGCTCTGCAGGCTCTaGAGCGACTTCTTCCGCGCT +
Preference number: 4 (lower is better)
Translates to: RLFCKRLHLTLLLLLPCWVLCRL*SDFFRA
Trigger: AGCGCGGAAGAAGTCGCTGCAGAGCCTGCAGAGCAC...CCAACAAGGTAGAAGTAGCAGGAGAGTCAAGTGTAGCCTTTTGCAAAAGAGCCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR GCA 90 bp TCTATACATCTGTATATGAGACGCAGAACCATGCATGTCCCCAGCAAAGCCACCGGTGGTAATGCACAGTaGTCTGCAGGCTCTGCAGCG +
Preference number: 4 (lower is better)
Translates to: SIHLYMRRRTMHVPSKATGGNAQ*SAGSAA
Trigger: CGCTGCAGAGCCTGCAGAGCACTGTGCATTACCACC...GGTGGCTTTGCTGGGGACATGCATGGTTCTGCGTCTCATATACAGATGTATAGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CCA 90 bp CTGTCTTGTTTGGAGACAGCTCCCAGAGATGAAGGGTGCCTGCTTTTCCAGGCGATGAAGGTGTTAACCTaGATGACGACCTTGACGGTG +
Preference number: 4 (lower is better)
Translates to: LSCLETAPRDEGCLLFQAMKVLT*MTTLTV
Trigger: CACCGTCAAGGTCGTCATCCAGGTTAACACCTTCAT...CGCCTGGAAAAGCAGGCACCCTTCATCTCTGGGAGCTGTCTCCAAACAAGACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CCA 90 bp CATAAAGGGGCTGAGATGGAGCCTGTGTCTCTGAACCCAAGTCCAACATCAGACTGCTCTAAACTGTTGTaGGTGCCCACGGTGCACACA +
Preference number: 4 (lower is better)
Translates to: HKGAEMEPVSLNPSPTSDCSKLL*VPTVHT
Trigger: TGTGTGCACCGTGGGCACCCACAACAGTTTAGAGCA...GTCTGATGTTGGACTTGGGTTCAGAGACACAGGCTCCATCTCAGCCCCTTTATG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR TCA 90 bp TCTGAGGAATCATGTAAGAGGGCATTGGCTCTACCCAGCCTCAGGTGTCCCACTCTCCAGGATGGATTCTaGGGAATTGCCAGAACCATT +
Preference number: 4 (lower is better)
Translates to: SEESCKRALALPSLRCPTLQDGF*GIARTI
Trigger: AATGGTTCTGGCAATTCCTCAGAATCCATCCTGGAG...AGTGGGACACCTGAGGCTGGGTAGAGCCAATGCCCTCTTACATGATTCCTCAGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
CDS-3UTR GCA 90 bp TACTTCTACCTTGTTGGTGCATGGCATCCTGGGACTGTCTCCAAGTGCCCAGCCTGGATTCTGAGGAATTaGCAGAACCATTGCTCAAGC +
Preference number: 4 (lower is better)
Translates to: YFYLVGAWHPGTVSKCPAWILRN*QNHCSS
Trigger: GCTTGAGCAATGGTTCTGGCAATTCCTCAGAATCCA...GGCTGGGCACTTGGAGACAGTCCCAGGATGCCATGCACCAACAAGGTAGAAGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CCA 90 bp CATAAAGGGGCTGAGATGGAGCCTGTGTCTCTGAACCCAAGTCCAACATCAGACTGTTGGGCTCCAGGATaGATTCTGAGGAATTGCCAG +
Preference number: 4 (lower is better)
Translates to: HKGAEMEPVSLNPSPTSDCWAPG*ILRNCQ
Trigger: CTGGCAATTCCTCAGAATCCATCCTGGAGCCCAACA...GTCTGATGTTGGACTTGGGTTCAGAGACACAGGCTCCATCTCAGCCCCTTTATG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CCA 90 bp TCTATACATCTGTATATGAGACGCAGAACCATGCATGTCCCCAGCAAAGCCACCCCAAAGGCCCAGGGATaGTGCACCCAGATGAAGTTG +
Preference number: 4 (lower is better)
Translates to: SIHLYMRRRTMHVPSKATPKAQG*CTQMKL
Trigger: CAACTTCATCTGGGTGCACCATCCCTGGGCCTTTGG...GGTGGCTTTGCTGGGGACATGCATGGTTCTGCGTCTCATATACAGATGTATAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR TCA 90 bp AGAGCTAAGGCTCTTTTGCAAAAGGCTACACTTGACTCTCCTGCTACTTCTACCGATGGTGCACCCAGATaGAGTTGTACAGCTCCACGG +
Preference number: 4 (lower is better)
Translates to: RAKALLQKATLDSPATSTDGAPR*SCTAPR
Trigger: CCGTGGAGCTGTACAACTTCATCTGGGTGCACCATC...GGTAGAAGTAGCAGGAGAGTCAAGTGTAGCCTTTTGCAAAAGAGCCTTAGCTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CCA 90 bp CTTGTTGGTGCATGGCATCCTGGGACTGTCTCCAAGTGCCCAGCCAGCTTGTTGCGTAGAAGAGAGCGTTaGTCAGCATATAGAAATAGT +
Preference number: 4 (lower is better)
Translates to: LVGAWHPGTVSKCPASLLRRRER*SAYRNS
Trigger: ACTATTTCTATATGCTGACCAACGCTCTCTTCTACG...CAACAAGCTGGCTGGGCACTTGGAGACAGTCCCAGGATGCCATGCACCAACAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR CAA 72 bp CAAAAGGCTACACTTGACTCTCCTGCTACTTCTACCTaGTTGGTGCATGGCATCCTGGGACTGTCTCCAAGT +
Preference number: 4 (lower is better)
Translates to: QKATLDSPATST*LVHGILGLSPS
Trigger: ACTTGGAGACAGTCCCAGGATGCCATGCACCAACAAGGTAGAAGTAGCAGGAGAGTCAAGTGTAGCCTTTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CCA 90 bp AGGCTCTTTTGCAAAAGGCTACACTTGACTCTCCTGCTACTTCTACCTTGTTGGAGACCTGGCGGAAGTTaGCGGAGACGAGGTTGTAAA +
Preference number: 4 (lower is better)
Translates to: RLFCKRLHLTLLLLLPCWRPGGS*RRRGCK
Trigger: TTTACAACCTCGTCTCCGCCAACTTCCGCCAGGTCT...CCAACAAGGTAGAAGTAGCAGGAGAGTCAAGTGTAGCCTTTTGCAAAAGAGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR CAA 72 bp GCCATCTCTCTCCCAGACAACAGAGCTAAGGCTCTTTaGCAAAAGGCTACACTTGACTCTCCTGCTACTTCT +
Preference number: 4 (lower is better)
Translates to: AISLPDNRAKAL*QKATLDSPATS
Trigger: AGAAGTAGCAGGAGAGTCAAGTGTAGCCTTTTGCAAAAGAGCCTTAGCTCTGTTGTCTGGGAGAGAGATGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR TCA 90 bp CATAAAGGGGCTGAGATGGAGCCTGTGTCTCTGAACCCAAGTCCAACATCAGACAGTCCACTGTTCATCTaGGATATAGCAGAACATGAG +
Preference number: 4 (lower is better)
Translates to: HKGAEMEPVSLNPSPTSDSPLFI*DIAEHE
Trigger: CTCATGTTCTGCTATATCTCAGATGAACAGTGGACT...GTCTGATGTTGGACTTGGGTTCAGAGACACAGGCTCCATCTCAGCCCCTTTATG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR CAA 72 bp CAAAGGAGACCGTCCTTGGTGAGTGCTAATTTCTTCTaGTTAAAGGCCTTTTGTAGGGCCAGGAGAGAAACC +
Preference number: 4 (lower is better)
Translates to: QRRPSLVSANFF*LKAFCRARRET
Trigger: GGTTTCTCTCCTGGCCCTACAAAAGGCCTTTAACAAGAAGAAATTAGCACTCACCAAGGACGGTCTCCTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
3UTR CAA 72 bp ACAACAGAGCTAAGGCTCTTTTGCAAAAGGCTACACTaGACTCTCCTGCTACTTCTACCTTGTTGGTGCATG +
Preference number: 4 (lower is better)
Translates to: TTELRLFCKRLH*TLLLLLPCWCM
Trigger: CATGCACCAACAAGGTAGAAGTAGCAGGAGAGTCAAGTGTAGCCTTTTGCAAAAGAGCCTTAGCTCTGTTGT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
3UTR CAA 72 bp AAACATCCATTAGTCTGGGAACAAAGGAGACCGTCCTaGGTGAGTGCTAATTTCTTCTTGTTAAAGGCCTTT +
Preference number: 4 (lower is better)
Translates to: KHPLVWEQRRPS*VSANFFLLKAF
Trigger: AAAGGCCTTTAACAAGAAGAAATTAGCACTCACCAAGGACGGTCTCCTTTGTTCCCAGACTAATGGATGTTT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
CDS-3UTR CCA 90 bp TGTATGTCCCTAATTACACCAAGCACACAGACAAGATGCTATAGACTACAGCAGCGTAGAAGAGAGCGTTaGTCAGCATATAGAAATAGT +
Preference number: 4 (lower is better)
Translates to: CMSLITPSTQTRCYRLQQRRRER*SAYRNS
Trigger: ACTATTTCTATATGCTGACCAACGCTCTCTTCTACG...CTGCTGTAGTCTATAGCATCTTGTCTGTGTGCTTGGTGTAATTAGGGACATACA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
CDS GCA 90 bp GTGCACACCAGGCCACCAGGGTGCTGGCCATCGGCACTGCGGTTCTaGAGGCCCATGGTGAAAAGCATGGGTACAGCCAGCAGCGCCGAG +
Preference number: 5 (lower is better)
Translates to: VHTRPPGCWPSALRF*RPMVKSMGTASSAE
Trigger: CTCGGCGCTGCTGGCTGTACCCATGCTTTTCACCATGGGCCTGCAGAACCGCAGTGCCGATGGCCAGCACCCTGGTGGCCTGGTGTGCAC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS GCA 90 bp ACGGTGGCTGTGTCCACCGTGGGTGTGCACACCAGGCCACCAGGGTaGTGGCCATCGGCACTGCGGTTCTGCAGGCCCATGGTGAAAAGC +
Preference number: 5 (lower is better)
Translates to: TVAVSTVGVHTRPPG*WPSALRFCRPMVKS
Trigger: GCTTTTCACCATGGGCCTGCAGAACCGCAGTGCCGATGGCCAGCACCCTGGTGGCCTGGTGTGCACACCCACGGTGGACACAGCCACCGT
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS CCA 90 bp CAAGCTGAGCGCCAGGAGCATCGTCTCCAGTCCGAACTGTGGATGTaGGAAGGGCTGGGCACCGGGTTCACTTGGGGCTCCCTGCTGCAC +
Preference number: 5 (lower is better)
Translates to: QAERQEHRLQSELWM*EGLGTGFTWGSLLH
Trigger: GTGCAGCAGGGAGCCCCAAGTGAACCCGGTGCCCAGCCCTTCCCACATCCACAGTTCGGACTGGAGACGATGCTCCTGGCGCTCAGCTTG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS CCA 90 bp GTGGCTGTGTCCACCGTGGGTGTGCACACCAGGCCACCAGGGTGCTaGCCATCGGCACTGCGGTTCTGCAGGCCCATGGTGAAAAGCATG +
Preference number: 5 (lower is better)
Translates to: VAVSTVGVHTRPPGC*PSALRFCRPMVKSM
Trigger: CATGCTTTTCACCATGGGCCTGCAGAACCGCAGTGCCGATGGCCAGCACCCTGGTGGCCTGGTGTGCACACCCACGGTGGACACAGCCAC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS TCA 90 bp CACCAGGGTGCTGGCCATCGGCACTGCGGTTCTGCAGGCCCATGGTaGAAAGCATGGGTACAGCCAGCAGCGCCGAGGCTAGCCATATGG +
Preference number: 5 (lower is better)
Translates to: HQGAGHRHCGSAGPW*KAWVQPAAPRLAIW
Trigger: CCATATGGCTAGCCTCGGCGCTGCTGGCTGTACCCATGCTTTTCACCATGGGCCTGCAGAACCGCAGTGCCGATGGCCAGCACCCTGGTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CAA 90 bp CCCAAGTCCAACATCAGACACTGTCTCGCCCTGCCAGTGCAGTTCCAAGGTGCTGGGCACCGGGTTCACTaGGGGCTCCCTGCTGCACGG +
Preference number: 5 (lower is better)
Translates to: PKSNIRHCLALPVQFQGAGHRVH*GLPAAR
Trigger: CCGTGCAGCAGGGAGCCCCAAGTGAACCCGGTGCCC...AGCACCTTGGAACTGCACTGGCAGGGCGAGACAGTGTCTGATGTTGGACTTGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS GCA 90 bp CAGCTCCACGGGCATGGCCAGCAGCAGGATGAGCAGGTCAGACAGTaGCAGGCTACCCAGGTGGTAATGCACAGTGCTCTGCAGGCTCTG +
Preference number: 5 (lower is better)
Translates to: QLHGHGQQQDEQVRQ*QATQVVMHSALQAL
Trigger: CAGAGCCTGCAGAGCACTGTGCATTACCACCTGGGTAGCCTGGCACTGTCTGACCTGCTCATCCTGCTGCTGGCCATGCCCGTGGAGCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS GCA 90 bp AGGGCCTGGACACGGCCTGGCTCGATGGACATGTTGAACGTGCTGTaGTCTAAACTGTTGTGGGTGCCCACGGTGCACACACCACGGCCC +
Preference number: 5 (lower is better)
Translates to: RAWTRPGSMDMLNVL*SKLLWVPTVHTPRP
Trigger: GGGCCGTGGTGTGTGCACCGTGGGCACCCACAACAGTTTAGAGCACAGCACGTTCAACATGTCCATCGAGCCAGGCCGTGTCCAGGCCCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS CCA 90 bp CCTGGCTCGATGGACATGTTGAACGTGCTGTGCTCTAAACTGTTGTaGGTGCCCACGGTGCACACACCACGGCCCTGCTCGGCAGCCTGG +
Preference number: 5 (lower is better)
Translates to: PGSMDMLNVLCSKLL*VPTVHTPRPCSAAW
Trigger: CCAGGCTGCCGAGCAGGGCCGTGGTGTGTGCACCGTGGGCACCCACAACAGTTTAGAGCACAGCACGTTCAACATGTCCATCGAGCCAGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS CCA 90 bp CCGGGTGGCGCTGGTGGAAAACGCATGGTTGCTGGACATGCTGTTTaGCTTCCTGGAGAACGTTGGCCTCTTCTTTCGGCGGCGGCGCCA +
Preference number: 5 (lower is better)
Translates to: PGGAGGKRMVAGHAV*LPGERWPLLSAAAP
Trigger: TGGCGCCGCCGCCGAAAGAAGAGGCCAACGTTCTCCAGGAAGCCAAACAGCATGTCCAGCAACCATGCGTTTTCCACCAGCGCCACCCGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CAA 90 bp GACTGGGGAGGCTGGACCCCACTTATCTTCCATCCTTCTGCAGATCCAAGAGGTGGGCACCGGGTTCACTaGGGGCTCCCTGCTGCACGG +
Preference number: 5 (lower is better)
Translates to: DWGGWTPLIFHPSADPRGGHRVH*GLPAAR
Trigger: CCGTGCAGCAGGGAGCCCCAAGTGAACCCGGTGCCC...ACCTCTTGGATCTGCAGAAGGATGGAAGATAAGTGGGGTCCAGCCTCCCCAGTC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS TCA 90 bp CTCCATGGCGCAGGGCCTGGACACGGCCTGGCTCGATGGACATGTTaGACGTGCTGTGCTCTAAACTGTTGTGGGTGCCCACGGTGCACA +
Preference number: 5 (lower is better)
Translates to: LHGAGPGHGLARWTC*TCCALNCCGCPRCT
Trigger: TGTGCACCGTGGGCACCCACAACAGTTTAGAGCACAGCACGTTCAACATGTCCATCGAGCCAGGCCGTGTCCAGGCCCTGCGCCATGGAG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS CCA 90 bp CGCTGGTGGAAAACGCATGGTTGCTGGACATGCTGTTTGGCTTCCTaGAGAACGTTGGCCTCTTCTTTCGGCGGCGGCGCCACCCAGGAC +
Preference number: 5 (lower is better)
Translates to: RWWKTHGCWTCCLAS*RTLASSFGGGATQD
Trigger: GTCCTGGGTGGCGCCGCCGCCGAAAGAAGAGGCCAACGTTCTCCAGGAAGCCAAACAGCATGTCCAGCAACCATGCGTTTTCCACCAGCG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CAA 90 bp TGGGACTGTCTCCAAGTGCCCAGCCAGCTTGTTGGCTGGAGGCTGAATGGGCCTCGGGACATGAGGGTCTaGGCCTTGAAGGGATGGCAG +
Preference number: 5 (lower is better)
Translates to: WDCLQVPSQLVGWRLNGPRDMRV*ALKGWQ
Trigger: CTGCCATCCCTTCAAGGCCAAGACCCTCATGTCCCG...AGGCCCATTCAGCCTCCAGCCAACAAGCTGGCTGGGCACTTGGAGACAGTCCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS GCA 90 bp TGGGTGCCCACGGTGCACACACCACGGCCCTGCTCGGCAGCCTGGTaGACCATGACGGTCAGTTTGTTGGCTATCACAGTGTTTAGGATG +
Preference number: 5 (lower is better)
Translates to: WVPTVHTPRPCSAAW*TMTVSLLAITVFRM
Trigger: CATCCTAAACACTGTGATAGCCAACAAACTGACCGTCATGGTGCACCAGGCTGCCGAGCAGGGCCGTGGTGTGTGCACCGTGGGCACCCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS GCA 90 bp TGCTCTAAACTGTTGTGGGTGCCCACGGTGCACACACCACGGCCCTaGTCGGCAGCCTGGTGCACCATGACGGTCAGTTTGTTGGCTATC +
Preference number: 5 (lower is better)
Translates to: CSKLLWVPTVHTPRP*SAAWCTMTVSLLAI
Trigger: GATAGCCAACAAACTGACCGTCATGGTGCACCAGGCTGCCGAGCAGGGCCGTGGTGTGTGCACCGTGGGCACCCACAACAGTTTAGAGCA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS GCA 90 bp GGGTTTCCCGGGTGGCGCTGGTGGAAAACGCATGGTTGCTGGACATaGTGTTTGGCTTCCTGGAGAACGTTGGCCTCTTCTTTCGGCGGC +
Preference number: 5 (lower is better)
Translates to: GFPGWRWWKTHGCWT*CLASWRTLASSFGG
Trigger: GCCGCCGAAAGAAGAGGCCAACGTTCTCCAGGAAGCCAAACAGCATGTCCAGCAACCATGCGTTTTCCACCAGCGCCACCCGGGAAACCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS CCA 90 bp TTGTGGGTGCCCACGGTGCACACACCACGGCCCTGCTCGGCAGCCTaGTGCACCATGACGGTCAGTTTGTTGGCTATCACAGTGTTTAGG +
Preference number: 5 (lower is better)
Translates to: LWVPTVHTPRPCSAA*CTMTVSLLAITVFR
Trigger: CCTAAACACTGTGATAGCCAACAAACTGACCGTCATGGTGCACCAGGCTGCCGAGCAGGGCCGTGGTGTGTGCACCGTGGGCACCCACAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS CCA 90 bp GCGATTACCACAGCACGTAAGACGAGGACTCCATGGCGCAGGGCCTaGACACGGCCTGGCTCGATGGACATGTTGAACGTGCTGTGCTCT +
Preference number: 5 (lower is better)
Translates to: AITTARKTRTPWRRA*TRPGSMDMLNVLCS
Trigger: AGAGCACAGCACGTTCAACATGTCCATCGAGCCAGGCCGTGTCCAGGCCCTGCGCCATGGAGTCCTCGTCTTACGTGCTGTGGTAATCGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CAA 90 bp CAGCTAGATGCTGGGGTGCTTGGCCTCCCCTTACCTGTGGAGTCTCAGACACTGAAGGCTGTCACCGAGTaGCCCACAGTGCCCACCACA +
Preference number: 5 (lower is better)
Translates to: QLDAGVLGLPLPVESQTLKAVTE*PTVPTT
Trigger: TGTGGTGGGCACTGTGGGCAACTCGGTGACAGCCTT...CAGTGTCTGAGACTCCACAGGTAAGGGGAGGCCAAGCACCCCAGCATCTAGCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CAA 90 bp TCCAGGGCTGCTGGCCAGCTAGATGCTGGGGTGCTTGGCCTCCCCTTACCTGTGTGCTGGACATGCTGTTaGGCTTCCTGGAGAACGTTG +
Preference number: 5 (lower is better)
Translates to: SRAAGQLDAGVLGLPLPVCWTCC*ASWRTL
Trigger: CAACGTTCTCCAGGAAGCCAAACAGCATGTCCAGCA...CACAGGTAAGGGGAGGCCAAGCACCCCAGCATCTAGCTGGCCAGCAGCCCTGGA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS TCA 90 bp GCACAGTGCTCTGCAGGCTCTGCAGCGACTTCTTCCGCGCTAGAGTaGAGGCTGTCACCGAGTTGCCCACAGTGCCCACCACAAAAAGTG +
Preference number: 5 (lower is better)
Translates to: AQCSAGSAATSSALE*RLSPSCPQCPPQKV
Trigger: CACTTTTTGTGGTGGGCACTGTGGGCAACTCGGTGACAGCCTTCACTCTAGCGCGGAAGAAGTCGCTGCAGAGCCTGCAGAGCACTGTGC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CAA 90 bp ACCCAAGTCCAACATCAGACACTGTCTCGCCCTGCCAGTGCAGTTCCAAGGTGCAAGGCTGTCACCGAGTaGCCCACAGTGCCCACCACA +
Preference number: 5 (lower is better)
Translates to: TQVQHQTLSRPASAVPRCKAVTE*PTVPTT
Trigger: TGTGGTGGGCACTGTGGGCAACTCGGTGACAGCCTT...GCACCTTGGAACTGCACTGGCAGGGCGAGACAGTGTCTGATGTTGGACTTGGGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CAA 90 bp GCTTGTTGGCTGGAGGCTGAATGGGCCTGTCTTGTTTGGAGACAGCTCCCAGAGCGGGACATGAGGGTCTaGGCCTTGAAGGGATGGCAG +
Preference number: 5 (lower is better)
Translates to: ACWLEAEWACLVWRQLPERDMRV*ALKGWQ
Trigger: CTGCCATCCCTTCAAGGCCAAGACCCTCATGTCCCG...CTCTGGGAGCTGTCTCCAAACAAGACAGGCCCATTCAGCCTCCAGCCAACAAGC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CAA 90 bp GCTTGTTGGCTGGAGGCTGAATGGGCCTGTCTTGTTTGGAGACAGCTCCCAGAGATGAGGGTCTTGGCCTaGAAGGGATGGCAGATGGCC +
Preference number: 5 (lower is better)
Translates to: ACWLEAEWACLVWRQLPEMRVLA*KGWQMA
Trigger: GGCCATCTGCCATCCCTTCAAGGCCAAGACCCTCAT...CTCTGGGAGCTGTCTCCAAACAAGACAGGCCCATTCAGCCTCCAGCCAACAAGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CAA 90 bp CCTGGACTGGGGAGGCTGGACCCCACTTATCTTCCATCCTTCTGCAGATCCAAGACGTCCAGGTTGCTGTaGGGCTCCAGGATGGATTCT +
Preference number: 5 (lower is better)
Translates to: PGLGRLDPTYLPSFCRSKTSRLL*GSRMDS
Trigger: AGAATCCATCCTGGAGCCCAACAGCAACCTGGACGT...CTTGGATCTGCAGAAGGATGGAAGATAAGTGGGGTCCAGCCTCCCCAGTCCAGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS CCA 90 bp AGTACAGGGTTTCCCGGGTGGCGCTGGTGGAAAACGCATGGTTGCTaGACATGCTGTTTGGCTTCCTGGAGAACGTTGGCCTCTTCTTTC +
Preference number: 5 (lower is better)
Translates to: STGFPGWRWWKTHGC*TCCLASWRTLASSF
Trigger: GAAAGAAGAGGCCAACGTTCTCCAGGAAGCCAAACAGCATGTCCAGCAACCATGCGTTTTCCACCAGCGCCACCCGGGAAACCCTGTACT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS TCA 90 bp GTCAGTGTTCACGTCCAGGTTGCTGTTGGGCTCCAGGATGGATTCTaGGGAATTGCCAGAACCATTGCTCAAGCTGAGCGCCAGGAGCAT +
Preference number: 5 (lower is better)
Translates to: VSVHVQVAVGLQDGF*GIARTIAQAERQEH
Trigger: ATGCTCCTGGCGCTCAGCTTGAGCAATGGTTCTGGCAATTCCTCAGAATCCATCCTGGAGCCCAACAGCAACCTGGACGTGAACACTGAC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CAA 90 bp TTGAACACCCTCCCCATTTCTCTGGGTGACCACAGATACCCTGACTTTTCACCCCTGTGCTCTAAACTGTaGTGGGTGCCCACGGTGCAC +
Preference number: 5 (lower is better)
Translates to: LNTLPISLGDHRYPDFSPLCSKL*WVPTVH
Trigger: GTGCACCGTGGGCACCCACAACAGTTTAGAGCACAG...GGGTGAAAAGTCAGGGTATCTGTGGTCACCCAGAGAAATGGGGAGGGTGTTCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000029084.9
CDS-3UTR CAA 90 bp CATAAAGGGGCTGAGATGGAGCCTGTGTCTCTGAACCCAAGTCCAACATCAGACCTGTGCTCTAAACTGTaGTGGGTGCCCACGGTGCAC +
Preference number: 5 (lower is better)
Translates to: HKGAEMEPVSLNPSPTSDLCSKL*WVPTVH
Trigger: GTGCACCGTGGGCACCCACAACAGTTTAGAGCACAG...GTCTGATGTTGGACTTGGGTTCAGAGACACAGGCTCCATCTCAGCCCCTTTATG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CAA 90 bp CATAAAGGGGCTGAGATGGAGCCTGTGTCTCTGAACCCAAGTCCAACATCAGACTGCACCCAGATGAAGTaGTACAGCTCCACGGGCATG +
Preference number: 5 (lower is better)
Translates to: HKGAEMEPVSLNPSPTSDCTQMK*YSSTGM
Trigger: CATGCCCGTGGAGCTGTACAACTTCATCTGGGTGCA...GTCTGATGTTGGACTTGGGTTCAGAGACACAGGCTCCATCTCAGCCCCTTTATG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CAA 90 bp CTTGTTGGCTGGAGGCTGAATGGGCCTGTCTTGTTTGGAGACAGCTCCCAGAGAGGCTCGATGGACATGTaGAACGTGCTGTGCTCTAAA +
Preference number: 5 (lower is better)
Translates to: LVGWRLNGPVLFGDSSQRGSMDM*NVLCSK
Trigger: TTTAGAGCACAGCACGTTCAACATGTCCATCGAGCC...TCTCTGGGAGCTGTCTCCAAACAAGACAGGCCCATTCAGCCTCCAGCCAACAAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CAA 90 bp CCCAAGTCCAACATCAGACACTGTCTCGCCCTGCCAGTGCAGTTCCAAGGTGCTATGGATTCTGAGGAATaGCCAGAACCATTGCTCAAG +
Preference number: 5 (lower is better)
Translates to: PKSNIRHCLALPVQFQGAMDSEE*PEPLLK
Trigger: CTTGAGCAATGGTTCTGGCAATTCCTCAGAATCCAT...AGCACCTTGGAACTGCACTGGCAGGGCGAGACAGTGTCTGATGTTGGACTTGGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CAA 90 bp AAGCCACCTGGACTGGGGAGGCTGGACCCCACTTATCTTCCATCCTTCTGCAGAACCATGACGGTCAGTTaGTTGGCTATCACAGTGTTT +
Preference number: 5 (lower is better)
Translates to: KPPGLGRLDPTYLPSFCRTMTVS*LAITVF
Trigger: AAACACTGTGATAGCCAACAAACTGACCGTCATGGT...TCTGCAGAAGGATGGAAGATAAGTGGGGTCCAGCCTCCCCAGTCCAGGTGGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS TCA 90 bp GAAATAGTGGTAGAAGTCGAAGAGGAACGTAGTCCACTGTTCATCTaGGATATAGCAGAACATGAGGCGCCGCACGTGGTAGGGCAGCCA +
Preference number: 5 (lower is better)
Translates to: EIVVEVEEERSPLFI*DIAEHEAPHVVGQP
Trigger: TGGCTGCCCTACCACGTGCGGCGCCTCATGTTCTGCTATATCTCAGATGAACAGTGGACTACGTTCCTCTTCGACTTCTACCACTATTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS GCA 90 bp CGGTCACCAGCACCTTGGAATAAATGTCAGTGTTCACGTCCAGGTTaGTGTTGGGCTCCAGGATGGATTCTGAGGAATTGCCAGAACCAT +
Preference number: 5 (lower is better)
Translates to: RSPAPWNKCQCSRPG*CWAPGWILRNCQNH
Trigger: ATGGTTCTGGCAATTCCTCAGAATCCATCCTGGAGCCCAACAGCAACCTGGACGTGAACACTGACATTTATTCCAAGGTGCTGGTGACCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CAA 90 bp TCTATACATCTGTATATGAGACGCAGAACCATGCATGTCCCCAGCAAAGCCACCTGCACCCAGATGAAGTaGTACAGCTCCACGGGCATG +
Preference number: 5 (lower is better)
Translates to: SIHLYMRRRTMHVPSKATCTQMK*YSSTGM
Trigger: CATGCCCGTGGAGCTGTACAACTTCATCTGGGTGCA...GGTGGCTTTGCTGGGGACATGCATGGTTCTGCGTCTCATATACAGATGTATAGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CAA 90 bp AGAGCTAAGGCTCTTTTGCAAAAGGCTACACTTGACTCTCCTGCTACTTCTACCATGAGGGTCTTGGCCTaGAAGGGATGGCAGATGGCC +
Preference number: 5 (lower is better)
Translates to: RAKALLQKATLDSPATSTMRVLA*KGWQMA
Trigger: GGCCATCTGCCATCCCTTCAAGGCCAAGACCCTCAT...GGTAGAAGTAGCAGGAGAGTCAAGTGTAGCCTTTTGCAAAAGAGCCTTAGCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CAA 90 bp TACTTCTACCTTGTTGGTGCATGGCATCCTGGGACTGTCTCCAAGTGCCCAGCCACCATGACGGTCAGTTaGTTGGCTATCACAGTGTTT +
Preference number: 5 (lower is better)
Translates to: YFYLVGAWHPGTVSKCPATMTVS*LAITVF
Trigger: AAACACTGTGATAGCCAACAAACTGACCGTCATGGT...GGCTGGGCACTTGGAGACAGTCCCAGGATGCCATGCACCAACAAGGTAGAAGTA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CAA 90 bp GCATGGATTCCCACAGCTTCCAGCTGTGGGCCCTGGACCTTACACAGTAATTTTGGCTCGATGGACATGTaGAACGTGCTGTGCTCTAAA +
Preference number: 5 (lower is better)
Translates to: AWIPTASSCGPWTLHSNFGSMDM*NVLCSK
Trigger: TTTAGAGCACAGCACGTTCAACATGTCCATCGAGCC...AAAATTACTGTGTAAGGTCCAGGGCCCACAGCTGGAAGCTGTGGGAATCCATGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS CCA 90 bp CCAGCACCTTGGAATAAATGTCAGTGTTCACGTCCAGGTTGCTGTTaGGCTCCAGGATGGATTCTGAGGAATTGCCAGAACCATTGCTCA +
Preference number: 5 (lower is better)
Translates to: PAPWNKCQCSRPGCC*APGWILRNCQNHCS
Trigger: TGAGCAATGGTTCTGGCAATTCCTCAGAATCCATCCTGGAGCCCAACAGCAACCTGGACGTGAACACTGACATTTATTCCAAGGTGCTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CAA 90 bp GCATGGATTCCCACAGCTTCCAGCTGTGGGCCCTGGACCTTACACAGTAATTTTATGGATTCTGAGGAATaGCCAGAACCATTGCTCAAG +
Preference number: 5 (lower is better)
Translates to: AWIPTASSCGPWTLHSNFMDSEE*PEPLLK
Trigger: CTTGAGCAATGGTTCTGGCAATTCCTCAGAATCCAT...AAAATTACTGTGTAAGGTCCAGGGCCCACAGCTGGAAGCTGTGGGAATCCATGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS-3UTR CAA 90 bp AGGCTCTTTTGCAAAAGGCTACACTTGACTCTCCTGCTACTTCTACCTTGTTGGTGCTGGACATGCTGTTaGGCTTCCTGGAGAACGTTG +
Preference number: 5 (lower is better)
Translates to: RLFCKRLHLTLLLLLPCWCWTCC*ASWRTL
Trigger: CAACGTTCTCCAGGAAGCCAAACAGCATGTCCAGCA...CCAACAAGGTAGAAGTAGCAGGAGAGTCAAGTGTAGCCTTTTGCAAAAGAGCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS GCA 72 bp GTGTCCACCGTGGGTGTGCACACCAGGCCACCAGGGTaGTGGCCATCGGCACTGCGGTTCTGCAGGCCCATG +
Preference number: 6 (lower is better)
Translates to: VSTVGVHTRPPG*WPSALRFCRPM
Trigger: CATGGGCCTGCAGAACCGCAGTGCCGATGGCCAGCACCCTGGTGGCCTGGTGTGCACACCCACGGTGGACAC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS CCA 72 bp TCCACCGTGGGTGTGCACACCAGGCCACCAGGGTGCTaGCCATCGGCACTGCGGTTCTGCAGGCCCATGGTG +
Preference number: 6 (lower is better)
Translates to: STVGVHTRPPGC*PSALRFCRPMV
Trigger: CACCATGGGCCTGCAGAACCGCAGTGCCGATGGCCAGCACCCTGGTGGCCTGGTGTGCACACCCACGGTGGA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS TCA 72 bp GCTGGCCATCGGCACTGCGGTTCTGCAGGCCCATGGTaGAAAGCATGGGTACAGCCAGCAGCGCCGAGGCTA +
Preference number: 6 (lower is better)
Translates to: AGHRHCGSAGPW*KAWVQPAAPRL
Trigger: TAGCCTCGGCGCTGCTGGCTGTACCCATGCTTTTCACCATGGGCCTGCAGAACCGCAGTGCCGATGGCCAGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS GCA 72 bp AGGCCACCAGGGTGCTGGCCATCGGCACTGCGGTTCTaGAGGCCCATGGTGAAAAGCATGGGTACAGCCAGC +
Preference number: 6 (lower is better)
Translates to: RPPGCWPSALRF*RPMVKSMGTAS
Trigger: GCTGGCTGTACCCATGCTTTTCACCATGGGCCTGCAGAACCGCAGTGCCGATGGCCAGCACCCTGGTGGCCT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS CCA 72 bp ATCGTCTCCAGTCCGAACTGTGGATGTGGGAAGGGCTaGGCACCGGGTTCACTTGGGGCTCCCTGCTGCACG +
Preference number: 6 (lower is better)
Translates to: IVSSPNCGCGKG*APGSLGAPCCT
Trigger: CGTGCAGCAGGGAGCCCCAAGTGAACCCGGTGCCCAGCCCTTCCCACATCCACAGTTCGGACTGGAGACGAT
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS CAA 90 bp CGGCCTGGCTCGATGGACATGTTGAACGTGCTGTGCTCTAAACTGTaGTGGGTGCCCACGGTGCACACACCACGGCCCTGCTCGGCAGCC +
Preference number: 6 (lower is better)
Translates to: RPGSMDMLNVLCSKL*WVPTVHTPRPCSAA
Trigger: GGCTGCCGAGCAGGGCCGTGGTGTGTGCACCGTGGGCACCCACAACAGTTTAGAGCACAGCACGTTCAACATGTCCATCGAGCCAGGCCG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS CAA 90 bp CCCGGGTGGCGCTGGTGGAAAACGCATGGTTGCTGGACATGCTGTTaGGCTTCCTGGAGAACGTTGGCCTCTTCTTTCGGCGGCGGCGCC +
Preference number: 6 (lower is better)
Translates to: PGWRWWKTHGCWTCC*ASWRTLASSFGGGA
Trigger: GGCGCCGCCGCCGAAAGAAGAGGCCAACGTTCTCCAGGAAGCCAAACAGCATGTCCAGCAACCATGCGTTTTCCACCAGCGCCACCCGGG
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS GCA 72 bp CCACGGCAGCCAGCATCCCCAAAGGCCCAGGGATGGTaGACCCAGATGAAGTTGTACAGCTCCACGGGCATG +
Preference number: 6 (lower is better)
Translates to: PRQPASPKAQGW*TQMKLYSSTGM
Trigger: CATGCCCGTGGAGCTGTACAACTTCATCTGGGTGCACCATCCCTGGGCCTTTGGGGATGCTGGCTGCCGTGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS CCA 72 bp CCCACGGTGCACACACCACGGCCCTGCTCGGCAGCCTaGTGCACCATGACGGTCAGTTTGTTGGCTATCACA +
Preference number: 6 (lower is better)
Translates to: PTVHTPRPCSAA*CTMTVSLLAIT
Trigger: TGTGATAGCCAACAAACTGACCGTCATGGTGCACCAGGCTGCCGAGCAGGGCCGTGGTGTGTGCACCGTGGG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS CAA 90 bp CAGCCAGCATCCCCAAAGGCCCAGGGATGGTGCACCCAGATGAAGTaGTACAGCTCCACGGGCATGGCCAGCAGCAGGATGAGCAGGTCA +
Preference number: 6 (lower is better)
Translates to: QPASPKAQGWCTQMK*YSSTGMASSRMSRS
Trigger: TGACCTGCTCATCCTGCTGCTGGCCATGCCCGTGGAGCTGTACAACTTCATCTGGGTGCACCATCCCTGGGCCTTTGGGGATGCTGGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS CAA 90 bp ACTCCATGGCGCAGGGCCTGGACACGGCCTGGCTCGATGGACATGTaGAACGTGCTGTGCTCTAAACTGTTGTGGGTGCCCACGGTGCAC +
Preference number: 6 (lower is better)
Translates to: TPWRRAWTRPGSMDM*NVLCSKLLWVPTVH
Trigger: GTGCACCGTGGGCACCCACAACAGTTTAGAGCACAGCACGTTCAACATGTCCATCGAGCCAGGCCGTGTCCAGGCCCTGCGCCATGGAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS TCA 72 bp TCTGCAGGCTCTGCAGCGACTTCTTCCGCGCTAGAGTaGAGGCTGTCACCGAGTTGCCCACAGTGCCCACCA +
Preference number: 6 (lower is better)
Translates to: SAGSAATSSALE*RLSPSCPQCPP
Trigger: TGGTGGGCACTGTGGGCAACTCGGTGACAGCCTTCACTCTAGCGCGGAAGAAGTCGCTGCAGAGCCTGCAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS TCA 72 bp AGTTGTACAGCTCCACGGGCATGGCCAGCAGCAGGATaGGCAGGTCAGACAGTGCCAGGCTACCCAGGTGGT +
Preference number: 6 (lower is better)
Translates to: SCTAPRAWPAAG*AGQTVPGYPGG
Trigger: ACCACCTGGGTAGCCTGGCACTGTCTGACCTGCTCATCCTGCTGCTGGCCATGCCCGTGGAGCTGTACAACT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS TCA 72 bp CAGCATCCCCAAAGGCCCAGGGATGGTGCACCCAGATaGAGTTGTACAGCTCCACGGGCATGGCCAGCAGCA +
Preference number: 6 (lower is better)
Translates to: QHPQRPRDGAPR*SCTAPRAWPAA
Trigger: TGCTGCTGGCCATGCCCGTGGAGCTGTACAACTTCATCTGGGTGCACCATCCCTGGGCCTTTGGGGATGCTG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS GCA 72 bp ACGGTGCACACACCACGGCCCTGCTCGGCAGCCTGGTaGACCATGACGGTCAGTTTGTTGGCTATCACAGTG +
Preference number: 6 (lower is better)
Translates to: TVHTPRPCSAAW*TMTVSLLAITV
Trigger: CACTGTGATAGCCAACAAACTGACCGTCATGGTGCACCAGGCTGCCGAGCAGGGCCGTGGTGTGTGCACCGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS CAA 72 bp TCCCCAAAGGCCCAGGGATGGTGCACCCAGATGAAGTaGTACAGCTCCACGGGCATGGCCAGCAGCAGGATG +
Preference number: 6 (lower is better)
Translates to: SPKAQGWCTQMK*YSSTGMASSRM
Trigger: CATCCTGCTGCTGGCCATGCCCGTGGAGCTGTACAACTTCATCTGGGTGCACCATCCCTGGGCCTTTGGGGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS CAA 72 bp CGCAGGGCCTGGACACGGCCTGGCTCGATGGACATGTaGAACGTGCTGTGCTCTAAACTGTTGTGGGTGCCC +
Preference number: 6 (lower is better)
Translates to: RRAWTRPGSMDM*NVLCSKLLWVP
Trigger: GGGCACCCACAACAGTTTAGAGCACAGCACGTTCAACATGTCCATCGAGCCAGGCCGTGTCCAGGCCCTGCG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS TCA 72 bp TGGCCAAGTAGCGCTCCACACTCAGGCTGGCTACATTaGGGGCTGTGGCATAGGTGCAGGCATCTCGCAGGA +
Preference number: 6 (lower is better)
Translates to: WPSSAPHSGWLH*GLWHRCRHLAG
Trigger: TCCTGCGAGATGCCTGCACCTATGCCACAGCCCTCAATGTAGCCAGCCTGAGTGTGGAGCGCTACTTGGCCA
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS TCA 72 bp GCAGGGCCTGGACACGGCCTGGCTCGATGGACATGTTaGACGTGCTGTGCTCTAAACTGTTGTGGGTGCCCA +
Preference number: 6 (lower is better)
Translates to: AGPGHGLARWTC*TCCALNCCGCP
Trigger: TGGGCACCCACAACAGTTTAGAGCACAGCACGTTCAACATGTCCATCGAGCCAGGCCGTGTCCAGGCCCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS GCA 72 bp CAGACAGTGCCAGGCTACCCAGGTGGTAATGCACAGTaGTCTGCAGGCTCTGCAGCGACTTCTTCCGCGCTA +
Preference number: 6 (lower is better)
Translates to: QTVPGYPGGNAQ*SAGSAATSSAL
Trigger: TAGCGCGGAAGAAGTCGCTGCAGAGCCTGCAGAGCACTGTGCATTACCACCTGGGTAGCCTGGCACTGTCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS CAA 90 bp ACAGCCAGCAGCGCCGAGGCTAGCCATATGGCACTGATGAATTTCTaGGTGCGGCTGCGGGACATGAGGGTCTTGGCCTTGAAGGGATGG +
Preference number: 6 (lower is better)
Translates to: TASSAEASHMALMNF*VRLRDMRVLALKGW
Trigger: CCATCCCTTCAAGGCCAAGACCCTCATGTCCCGCAGCCGCACCAAGAAATTCATCAGTGCCATATGGCTAGCCTCGGCGCTGCTGGCTGT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS CAA 90 bp CTCTGCAGCGACTTCTTCCGCGCTAGAGTGAAGGCTGTCACCGAGTaGCCCACAGTGCCCACCACAAAAAGTGCCAGGTATACAGCGGTC +
Preference number: 6 (lower is better)
Translates to: LCSDFFRARVKAVTE*PTVPTTKSARYTAV
Trigger: GACCGCTGTATACCTGGCACTTTTTGTGGTGGGCACTGTGGGCAACTCGGTGACAGCCTTCACTCTAGCGCGGAAGAAGTCGCTGCAGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS GCA 72 bp GGGTTTCCCGGGTGGCGCTGGTGGAAAACGCATGGTTaGTGGACATGCTGTTTGGCTTCCTGGAGAACGTTG +
Preference number: 6 (lower is better)
Translates to: GFPGWRWWKTHG*WTCCLASWRTL
Trigger: CAACGTTCTCCAGGAAGCCAAACAGCATGTCCAGCAACCATGCGTTTTCCACCAGCGCCACCCGGGAAACCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS CCA 72 bp ATGGACATGTTGAACGTGCTGTGCTCTAAACTGTTGTaGGTGCCCACGGTGCACACACCACGGCCCTGCTCG +
Preference number: 6 (lower is better)
Translates to: MDMLNVLCSKLL*VPTVHTPRPCS
Trigger: CGAGCAGGGCCGTGGTGTGTGCACCGTGGGCACCCACAACAGTTTAGAGCACAGCACGTTCAACATGTCCAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS CCA 72 bp AAAACGCATGGTTGCTGGACATGCTGTTTGGCTTCCTaGAGAACGTTGGCCTCTTCTTTCGGCGGCGGCGCC +
Preference number: 6 (lower is better)
Translates to: KTHGCWTCCLAS*RTLASSFGGGA
Trigger: GGCGCCGCCGCCGAAAGAAGAGGCCAACGTTCTCCAGGAAGCCAAACAGCATGTCCAGCAACCATGCGTTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS CCA 72 bp TTTCCCGGGTGGCGCTGGTGGAAAACGCATGGTTGCTaGACATGCTGTTTGGCTTCCTGGAGAACGTTGGCC +
Preference number: 6 (lower is better)
Translates to: FPGWRWWKTHGC*TCCLASWRTLA
Trigger: GGCCAACGTTCTCCAGGAAGCCAAACAGCATGTCCAGCAACCATGCGTTTTCCACCAGCGCCACCCGGGAAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS CAA 72 bp AGCGCCGAGGCTAGCCATATGGCACTGATGAATTTCTaGGTGCGGCTGCGGGACATGAGGGTCTTGGCCTTG +
Preference number: 6 (lower is better)
Translates to: SAEASHMALMNF*VRLRDMRVLAL
Trigger: CAAGGCCAAGACCCTCATGTCCCGCAGCCGCACCAAGAAATTCATCAGTGCCATATGGCTAGCCTCGGCGCT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS TCA 72 bp ACACACCACGGCCCTGCTCGGCAGCCTGGTGCACCATaGCGGTCAGTTTGTTGGCTATCACAGTGTTTAGGA +
Preference number: 6 (lower is better)
Translates to: THHGPARQPGAP*RSVCWLSQCLG
Trigger: TCCTAAACACTGTGATAGCCAACAAACTGACCGTCATGGTGCACCAGGCTGCCGAGCAGGGCCGTGGTGTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS CAA 72 bp AGGAAGGACATGAAGGTGTTAACCTGGATGACGACCTaGACGGTGGCTGTGTCCACCGTGGGTGTGCACACC +
Preference number: 6 (lower is better)
Translates to: RKDMKVLTWMTT*TVAVSTVGVHT
Trigger: GGTGTGCACACCCACGGTGGACACAGCCACCGTCAAGGTCGTCATCCAGGTTAACACCTTCATGTCCTTCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS CAA 90 bp CCACGGCCCTGCTCGGCAGCCTGGTGCACCATGACGGTCAGTTTGTaGGCTATCACAGTGTTTAGGATGGAGATGATCAGCATGGGAAAC +
Preference number: 6 (lower is better)
Translates to: PRPCSAAWCTMTVSL*AITVFRMEMISMGN
Trigger: GTTTCCCATGCTGATCATCTCCATCCTAAACACTGTGATAGCCAACAAACTGACCGTCATGGTGCACCAGGCTGCCGAGCAGGGCCGTGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS CAA 90 bp ACACCACGGCCCTGCTCGGCAGCCTGGTGCACCATGACGGTCAGTTaGTTGGCTATCACAGTGTTTAGGATGGAGATGATCAGCATGGGA +
Preference number: 6 (lower is better)
Translates to: TPRPCSAAWCTMTVS*LAITVFRMEMISMG
Trigger: TCCCATGCTGATCATCTCCATCCTAAACACTGTGATAGCCAACAAACTGACCGTCATGGTGCACCAGGCTGCCGAGCAGGGCCGTGGTGT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS CCA 72 bp GCTGGTGGAAAACGCATGGTTGCTGGACATGCTGTTTaGCTTCCTGGAGAACGTTGGCCTCTTCTTTCGGCG +
Preference number: 6 (lower is better)
Translates to: AGGKRMVAGHAV*LPGERWPLLSA
Trigger: CGCCGAAAGAAGAGGCCAACGTTCTCCAGGAAGCCAAACAGCATGTCCAGCAACCATGCGTTTTCCACCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS CAA 72 bp GACTTCTTCCGCGCTAGAGTGAAGGCTGTCACCGAGTaGCCCACAGTGCCCACCACAAAAAGTGCCAGGTAT +
Preference number: 6 (lower is better)
Translates to: DFFRARVKAVTE*PTVPTTKSARY
Trigger: ATACCTGGCACTTTTTGTGGTGGGCACTGTGGGCAACTCGGTGACAGCCTTCACTCTAGCGCGGAAGAAGTC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS CAA 72 bp CGCTGGTGGAAAACGCATGGTTGCTGGACATGCTGTTaGGCTTCCTGGAGAACGTTGGCCTCTTCTTTCGGC +
Preference number: 6 (lower is better)
Translates to: RWWKTHGCWTCC*ASWRTLASSFG
Trigger: GCCGAAAGAAGAGGCCAACGTTCTCCAGGAAGCCAAACAGCATGTCCAGCAACCATGCGTTTTCCACCAGCG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS CCA 72 bp CAGTGTTCACGTCCAGGTTGCTGTTGGGCTCCAGGATaGATTCTGAGGAATTGCCAGAACCATTGCTCAAGC +
Preference number: 6 (lower is better)
Translates to: QCSRPGCCWAPG*ILRNCQNHCSS
Trigger: GCTTGAGCAATGGTTCTGGCAATTCCTCAGAATCCATCCTGGAGCCCAACAGCAACCTGGACGTGAACACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS CAA 72 bp TGCTCGGCAGCCTGGTGCACCATGACGGTCAGTTTGTaGGCTATCACAGTGTTTAGGATGGAGATGATCAGC +
Preference number: 6 (lower is better)
Translates to: CSAAWCTMTVSL*AITVFRMEMIS
Trigger: GCTGATCATCTCCATCCTAAACACTGTGATAGCCAACAAACTGACCGTCATGGTGCACCAGGCTGCCGAGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2
CDS TCA 72 bp GTAGAAGTCGAAGAGGAACGTAGTCCACTGTTCATCTaGGATATAGCAGAACATGAGGCGCCGCACGTGGTA +
Preference number: 6 (lower is better)
Translates to: VEVEEERSPLFI*DIAEHEAPHVV
Trigger: TACCACGTGCGGCGCCTCATGTTCTGCTATATCTCAGATGAACAGTGGACTACGTTCCTCTTCGACTTCTAC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000029084.9
ENSMUST00000170448.2