RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NTS (Mus musculus)

Ensembl gene IDs: ENSMUSG00000019890

Ensembl transcript IDs: ENSMUST00000020040.5

Found 31 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR-3UTR GCA 90 bp TCTTTATATGATAGTAACTCCTTTGTACCGAGAGATGAACTAGCAGTTTATGGGTTGGCACCATTGTTCTaGTTTGGGTTAATAACGCTC +
Preference number: 2 (lower is better)
Translates to: SLYDSNSFVPRDELAVYGLAPLF*FGLITL
Trigger: GAGCGTTATTAACCCAAAGCAGAACAATGGTGCCAA...CCCATAAACTGCTAGTTCATCTCTCGGTACAAAGGAGTTACTATCATATAAAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020040.5
CDS-3UTR TCA 90 bp CAATTCTTTCAGATGAGTCTTTATATGATAGTAACTCCTTTGTACCGAGAGATGATTATCTCCCAGTGTTaGAAGGCCCTGCTGCGGCAG +
Preference number: 4 (lower is better)
Translates to: QFFQMSLYMIVTPLYREMIISQC*KALLRQ
Trigger: CTGCCGCAGCAGGGCCTTTCAACACTGGGAGATAAT...CATCTCTCGGTACAAAGGAGTTACTATCATATAAAGACTCATCTGAAAGAATTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020040.5
CDS-3UTR TCA 90 bp TCTTTATATGATAGTAACTCCTTTGTACCGAGAGATGAACTAGCAGTTTATGGGAGTAGGAACCCCTCTTaGGAATGTAGGGCCTTCTGG +
Preference number: 4 (lower is better)
Translates to: SLYDSNSFVPRDELAVYGSRNPS*ECRAFW
Trigger: CCAGAAGGCCCTACATTCTCAAGAGGGGTTCCTACT...CCCATAAACTGCTAGTTCATCTCTCGGTACAAAGGAGTTACTATCATATAAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020040.5
CDS-3UTR GCA 90 bp CAATTCTTTCAGATGAGTCTTTATATGATAGTAACTCCTTTGTACCGAGAGATGATCATGCATGTCTCCTaGTTCCTCGGCCGGGCTGTT +
Preference number: 4 (lower is better)
Translates to: QFFQMSLYMIVTPLYREMIMHVS*FLGRAV
Trigger: AACAGCCCGGCCGAGGAAGCAGGAGACATGCATGAT...CATCTCTCGGTACAAAGGAGTTACTATCATATAAAGACTCATCTGAAAGAATTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020040.5
CDS-3UTR GCA 90 bp TCTTTATATGATAGTAACTCCTTTGTACCGAGAGATGAACTAGCAGTTTATGGGAGTGTTGAAAGGCCCTaGTGCGGCAGATTTTCTGGA +
Preference number: 4 (lower is better)
Translates to: SLYDSNSFVPRDELAVYGSVERP*CGRFSG
Trigger: TCCAGAAAATCTGCCGCAGCAGGGCCTTTCAACACT...CCCATAAACTGCTAGTTCATCTCTCGGTACAAAGGAGTTACTATCATATAAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020040.5
CDS-3UTR CCA 90 bp CAATTCTTTCAGATGAGTCTTTATATGATAGTAACTCCTTTGTACCGAGAGATGCTGCGGCAGATTTTCTaGAGCTGGAAGATGGTCAGC +
Preference number: 4 (lower is better)
Translates to: QFFQMSLYMIVTPLYREMLRQIF*SWKMVS
Trigger: GCTGACCATCTTCCAGCTCCAGAAAATCTGCCGCAG...CATCTCTCGGTACAAAGGAGTTACTATCATATAAAGACTCATCTGAAAGAATTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020040.5
CDS-3UTR CCA 90 bp CTTTCAGATGAGTCTTTATATGATAGTAACTCCTTTGTACCGAGAGATGAACTATCTGGAGCTGGAAGATaGTCAGCATTGCTTCCAAGC +
Preference number: 4 (lower is better)
Translates to: LSDESLYDSNSFVPRDELSGAGR*SALLPS
Trigger: GCTTGGAAGCAATGCTGACCATCTTCCAGCTCCAGA...TAGTTCATCTCTCGGTACAAAGGAGTTACTATCATATAAAGACTCATCTGAAAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020040.5
CDS-3UTR TCA 90 bp TCTTTATATGATAGTAACTCCTTTGTACCGAGAGATGAACTAGCAGTTTATGGGGAGGACTTGCTTTGCTaGTCTTGGATGTATGCATGT +
Preference number: 4 (lower is better)
Translates to: SLYDSNSFVPRDELAVYGEDLLC*SWMYAC
Trigger: ACATGCATACATCCAAGATCAGCAAAGCAAGTCCTC...CCCATAAACTGCTAGTTCATCTCTCGGTACAAAGGAGTTACTATCATATAAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020040.5
CDS-3UTR GCA 90 bp CTTTCAGATGAGTCTTTATATGATAGTAACTCCTTTGTACCGAGAGATGAACTAGGGGAAGTTTCCTTTTaGCAACAAGGTCGTCATCAT +
Preference number: 4 (lower is better)
Translates to: LSDESLYDSNSFVPRDELGEVSF*QQGRHH
Trigger: ATGATGACGACCTTGTTGGCAAAAGGAAACTTCCCC...TAGTTCATCTCTCGGTACAAAGGAGTTACTATCATATAAAGACTCATCTGAAAG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020040.5
CDS-3UTR GCA 90 bp TCTTTATATGATAGTAACTCCTTTGTACCGAGAGATGAACTAGCAGTTTATGGGGAAGATGGTCAGCATTaGTTCCAAGCTAAAACCATC +
Preference number: 4 (lower is better)
Translates to: SLYDSNSFVPRDELAVYGEDGQH*FQAKTI
Trigger: GATGGTTTTAGCTTGGAAGCAATGCTGACCATCTTC...CCCATAAACTGCTAGTTCATCTCTCGGTACAAAGGAGTTACTATCATATAAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020040.5
CDS-3UTR CCA 90 bp CAATTCTTTCAGATGAGTCTTTATATGATAGTAACTCCTTTGTACCGAGAGATGCAGATTTTCTGGAGCTaGAAGATGGTCAGCATTGCT +
Preference number: 4 (lower is better)
Translates to: QFFQMSLYMIVTPLYREMQIFWS*KMVSIA
Trigger: AGCAATGCTGACCATCTTCCAGCTCCAGAAAATCTG...CATCTCTCGGTACAAAGGAGTTACTATCATATAAAGACTCATCTGAAAGAATTG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020040.5
CDS-3UTR CCA 90 bp CTTTCAGATGAGTCTTTATATGATAGTAACTCCTTTGTACCGAGAGATGAACTAGAATGTAGGGCCTTCTaGGTTTATTTTCATACAGCT +
Preference number: 4 (lower is better)
Translates to: LSDESLYDSNSFVPRDELECRAF*VYFHTA
Trigger: AGCTGTATGAAAATAAACCCAGAAGGCCCTACATTC...TAGTTCATCTCTCGGTACAAAGGAGTTACTATCATATAAAGACTCATCTGAAAG
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020040.5
CDS-3UTR GCA 90 bp CTTTCAGATGAGTCTTTATATGATAGTAACTCCTTTGTACCGAGAGATGAACTACTGATCTTGGATGTATaGATGTTTGTCAATAGATCT +
Preference number: 4 (lower is better)
Translates to: LSDESLYDSNSFVPRDELLILDV*MFVNRS
Trigger: AGATCTATTGACAAACATGCATACATCCAAGATCAG...TAGTTCATCTCTCGGTACAAAGGAGTTACTATCATATAAAGACTCATCTGAAAG
34% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020040.5
CDS GCA 90 bp GGGAAGTTTCCTTTTGCCAACAAGGTCGTCATCATGCATGTCTCCTaGTTCCTCGGCCGGGCTGTTCACGTTATTTATGAGGCTGCAAAC +
Preference number: 5 (lower is better)
Translates to: GKFPFANKVVIMHVS*FLGRAVHVIYEAAN
Trigger: GTTTGCAGCCTCATAAATAACGTGAACAGCCCGGCCGAGGAAGCAGGAGACATGCATGATGACGACCTTGTTGGCAAAAGGAAACTTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020040.5
CDS TCA 90 bp CATGCATGTCTCCTGCTTCCTCGGCCGGGCTGTTCACGTTATTTATaGGGCTGCAAACATTTAGCAAGGTCATTTTCCAAGACGGAGGAC +
Preference number: 5 (lower is better)
Translates to: HACLLLPRPGCSRYL*GCKHLARSFSKTED
Trigger: GTCCTCCGTCTTGGAAAATGACCTTGCTAAATGTTTGCAGCCTCATAAATAACGTGAACAGCCCGGCCGAGGAAGCAGGAGACATGCATG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020040.5
CDS GCA 90 bp TCCAGAACAAGGGGAAGTTTCCTTTTGCCAACAAGGTCGTCATCATaGATGTCTCCTGCTTCCTCGGCCGGGCTGTTCACGTTATTTATG +
Preference number: 5 (lower is better)
Translates to: SRTRGSFLLPTRSSS*MSPASSAGLFTLFM
Trigger: CATAAATAACGTGAACAGCCCGGCCGAGGAAGCAGGAGACATGCATGATGACGACCTTGTTGGCAAAAGGAAACTTCCCCTTGTTCTGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020040.5
CDS GCA 90 bp CAAGGATATCTTCCTGGATTATCTCCCAGTGTTGAAAGGCCCTGCTaGGGCAGATTTTCTGGAGCTGGAAGATGGTCAGCATTGCTTCCA +
Preference number: 5 (lower is better)
Translates to: QGYLPGLSPSVERPC*GRFSGAGRWSALLP
Trigger: TGGAAGCAATGCTGACCATCTTCCAGCTCCAGAAAATCTGCCGCAGCAGGGCCTTTCAACACTGGGAGATAATCCAGGAAGATATCCTTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020040.5
CDS GCA 90 bp GTCATTTTCCAAGACGGAGGACTTGCTTTGCTGATCTTGGATGTATaGATGTTTGTCAATAGATCTGCCTCCAGGGCTCTCACATCTTCT +
Preference number: 5 (lower is better)
Translates to: VIFQDGGLALLILDV*MFVNRSASRALTSS
Trigger: AGAAGATGTGAGAGCCCTGGAGGCAGATCTATTGACAAACATGCATACATCCAAGATCAGCAAAGCAAGTCCTCCGTCTTGGAAAATGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020040.5
CDS-3UTR CAA 90 bp TCTTTATATGATAGTAACTCCTTTGTACCGAGAGATGAACTAGCAGTTTATGGGTGGATGTATGCATGTTaGTCAATAGATCTGCCTCCA +
Preference number: 5 (lower is better)
Translates to: SLYDSNSFVPRDELAVYGWMYAC*SIDLPP
Trigger: TGGAGGCAGATCTATTGACAAACATGCATACATCCA...CCCATAAACTGCTAGTTCATCTCTCGGTACAAAGGAGTTACTATCATATAAAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020040.5
CDS GCA 72 bp AGGGGAAGTTTCCTTTTGCCAACAAGGTCGTCATCATaGATGTCTCCTGCTTCCTCGGCCGGGCTGTTCACG +
Preference number: 6 (lower is better)
Translates to: RGSFLLPTRSSS*MSPASSAGLFT
Trigger: CGTGAACAGCCCGGCCGAGGAAGCAGGAGACATGCATGATGACGACCTTGTTGGCAAAAGGAAACTTCCCCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020040.5
CDS GCA 72 bp CCTTTTGCCAACAAGGTCGTCATCATGCATGTCTCCTaGTTCCTCGGCCGGGCTGTTCACGTTATTTATGAG +
Preference number: 6 (lower is better)
Translates to: PFANKVVIMHVS*FLGRAVHVIYE
Trigger: CTCATAAATAACGTGAACAGCCCGGCCGAGGAAGCAGGAGACATGCATGATGACGACCTTGTTGGCAAAAGG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020040.5
CDS CAA 90 bp ATTGCTTCCAAGCTAAAACCATCCAGAACAAGGGGAAGTTTCCTTTaGCCAACAAGGTCGTCATCATGCATGTCTCCTGCTTCCTCGGCC +
Preference number: 6 (lower is better)
Translates to: IASKLKPSRTRGSFL*PTRSSSCMSPASSA
Trigger: GGCCGAGGAAGCAGGAGACATGCATGATGACGACCTTGTTGGCAAAAGGAAACTTCCCCTTGTTCTGGATGGTTTTAGCTTGGAAGCAAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020040.5
CDS TCA 72 bp CTCCTGCTTCCTCGGCCGGGCTGTTCACGTTATTTATaGGGCTGCAAACATTTAGCAAGGTCATTTTCCAAG +
Preference number: 6 (lower is better)
Translates to: LLLPRPGCSRYL*GCKHLARSFSK
Trigger: CTTGGAAAATGACCTTGCTAAATGTTTGCAGCCTCATAAATAACGTGAACAGCCCGGCCGAGGAAGCAGGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020040.5
CDS GCA 72 bp CAAGACGGAGGACTTGCTTTGCTGATCTTGGATGTATaGATGTTTGTCAATAGATCTGCCTCCAGGGCTCTC +
Preference number: 6 (lower is better)
Translates to: QDGGLALLILDV*MFVNRSASRAL
Trigger: GAGAGCCCTGGAGGCAGATCTATTGACAAACATGCATACATCCAAGATCAGCAAAGCAAGTCCTCCGTCTTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020040.5
CDS CAA 72 bp GTTATCAAGGATATCTTCCTGGATTATCTCCCAGTGTaGAAAGGCCCTGCTGCGGCAGATTTTCTGGAGCTG +
Preference number: 6 (lower is better)
Translates to: VIKDIFLDYLPV*KGPAAADFLEL
Trigger: CAGCTCCAGAAAATCTGCCGCAGCAGGGCCTTTCAACACTGGGAGATAATCCAGGAAGATATCCTTGATAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020040.5
CDS CAA 90 bp ATCATTGACGTTATCAAGGATATCTTCCTGGATTATCTCCCAGTGTaGAAAGGCCCTGCTGCGGCAGATTTTCTGGAGCTGGAAGATGGT +
Preference number: 6 (lower is better)
Translates to: IIDVIKDIFLDYLPV*KGPAAADFLELEDG
Trigger: ACCATCTTCCAGCTCCAGAAAATCTGCCGCAGCAGGGCCTTTCAACACTGGGAGATAATCCAGGAAGATATCCTTGATAACGTCAATGAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020040.5
CDS CAA 90 bp TTTAGCAAGGTCATTTTCCAAGACGGAGGACTTGCTTTGCTGATCTaGGATGTATGCATGTTTGTCAATAGATCTGCCTCCAGGGCTCTC +
Preference number: 6 (lower is better)
Translates to: FSKVIFQDGGLALLI*DVCMFVNRSASRAL
Trigger: GAGAGCCCTGGAGGCAGATCTATTGACAAACATGCATACATCCAAGATCAGCAAAGCAAGTCCTCCGTCTTGGAAAATGACCTTGCTAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020040.5
CDS CAA 72 bp AAGCTAAAACCATCCAGAACAAGGGGAAGTTTCCTTTaGCCAACAAGGTCGTCATCATGCATGTCTCCTGCT +
Preference number: 6 (lower is better)
Translates to: KLKPSRTRGSFL*PTRSSSCMSPA
Trigger: AGCAGGAGACATGCATGATGACGACCTTGTTGGCAAAAGGAAACTTCCCCTTGTTCTGGATGGTTTTAGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020040.5
CDS CAA 72 bp GTCATTTTCCAAGACGGAGGACTTGCTTTGCTGATCTaGGATGTATGCATGTTTGTCAATAGATCTGCCTCC +
Preference number: 6 (lower is better)
Translates to: VIFQDGGLALLI*DVCMFVNRSAS
Trigger: GGAGGCAGATCTATTGACAAACATGCATACATCCAAGATCAGCAAAGCAAGTCCTCCGTCTTGGAAAATGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020040.5
CDS TCA 72 bp GCAAGGTCATTTTCCAAGACGGAGGACTTGCTTTGCTaGTCTTGGATGTATGCATGTTTGTCAATAGATCTG +
Preference number: 6 (lower is better)
Translates to: ARSFSKTEDLLC*SWMYACLSIDL
Trigger: CAGATCTATTGACAAACATGCATACATCCAAGATCAGCAAAGCAAGTCCTCCGTCTTGGAAAATGACCTTGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020040.5
CDS CAA 72 bp TTTAGCAAGGTCATTTTCCAAGACGGAGGACTTGCTTaGCTGATCTTGGATGTATGCATGTTTGTCAATAGA +
Preference number: 6 (lower is better)
Translates to: FSKVIFQDGGLA*LILDVCMFVNR
Trigger: TCTATTGACAAACATGCATACATCCAAGATCAGCAAAGCAAGTCCTCCGTCTTGGAAAATGACCTTGCTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020040.5