RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NTN1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020902

Ensembl transcript IDs: ENSMUST00000021284.4, ENSMUST00000108674.9, ENSMUST00000135141.2

Found 375 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CTCGGAGAGGCCACCCCAGCCTCCCTAGGCTTTGCCCTTGGCATCTaGCCCTCCCTCCCATCTGAAGGAGCCGGATGGTCCTGCCTCCTG +
Preference number: 1 (lower is better)
Translates to: LGEATPASLGFALGI*PSLPSEGAGWSCLL
Trigger: CAGGAGGCAGGACCATCCGGCTCCTTCAGATGGGAGGGAGGGTCAGATGCCAAGGGCAAAGCCTAGGGAGGCTGGGGTGGCCTCTCCGAG
66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR TCA 90 bp GGAGTAGAGCAGGCCCCAGGAGAACTCTCCCCTCCCTACAGATGGTaGACTCCACCCAGGAGACCAGCCCAGCAGGTGGCAGTGGAGACC +
Preference number: 1 (lower is better)
Translates to: GVEQAPGELSPPYRW*TPPRRPAQQVAVET
Trigger: GGTCTCCACTGCCACCTGCTGGGCTGGTCTCCTGGGTGGAGTTCACCATCTGTAGGGAGGGGAGAGTTCTCCTGGGGCCTGCTCTACTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR CCA 90 bp CTCCCTACAGATGGTGAACTCCACCCAGGAGACCAGCCCAGCAGGTaGCAGTGGAGACCAAAGCTGGCTGATCCCAGTGTCATCGGGCCC +
Preference number: 1 (lower is better)
Translates to: LPTDGELHPGDQPSR*QWRPKLADPSVIGP
Trigger: GGGCCCGATGACACTGGGATCAGCCAGCTTTGGTCTCCACTGCCACCTGCTGGGCTGGTCTCCTGGGTGGAGTTCACCATCTGTAGGGAG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR TCA 90 bp CCCTTCAGGGCAGCCAAGTGGGCAGGAGAAATGAAACCAATTTCCTaGCTGAGAGGGCCAGGCCTCTCATCCAGTGTGCGGGGCGCGAGG +
Preference number: 1 (lower is better)
Translates to: PFRAAKWAGEMKPIS*LRGPGLSSSVRGAR
Trigger: CCTCGCGCCCCGCACACTGGATGAGAGGCCTGGCCCTCTCAGTCAGGAAATTGGTTTCATTTCTCCTGCCCACTTGGCTGCCCTGAAGGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR GCA 90 bp GTCCTCATTTCTCCAGGGCCTGGCCTGTCAATACAGGGTGCTTTCTaGCATGCGCATAAGAGCGCAGCCAGGGGTGTGAGGGTGGGGCTG +
Preference number: 1 (lower is better)
Translates to: VLISPGPGLSIQGAF*HAHKSAARGVRVGL
Trigger: CAGCCCCACCCTCACACCCCTGGCTGCGCTCTTATGCGCATGGCAGAAAGCACCCTGTATTGACAGGCCAGGCCCTGGAGAAATGAGGAC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR GCA 90 bp CCAGGGAAGCCACCTGACCCTTGCCAGGGTAGGTCTGTGTGCTCATaGCAGCCTCCCTCTGAAGCCTTAGTCTTCCTCCGGCTAGGGAAG +
Preference number: 1 (lower is better)
Translates to: PGKPPDPCQGRSVCS*QPPSEALVFLRLGK
Trigger: CTTCCCTAGCCGGAGGAAGACTAAGGCTTCAGAGGGAGGCTGGCATGAGCACACAGACCTACCCTGGCAAGGGTCAGGTGGCTTCCCTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR GCA 90 bp TCTGACCCTCCCTCCCATCTGAAGGAGCCGGATGGTCCTGCCTCCTaGCCTGCTTTCTGGGACAGAAGCTCTGGCCAGAAACCACAGCTC +
Preference number: 1 (lower is better)
Translates to: SDPPSHLKEPDGPAS*PAFWDRSSGQKPQL
Trigger: GAGCTGTGGTTTCTGGCCAGAGCTTCTGTCCCAGAAAGCAGGGCAGGAGGCAGGACCATCCGGCTCCTTCAGATGGGAGGGAGGGTCAGA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR CCA 90 bp GGAGACAGCTGCCTCCCTAAGGCTGGCTCTCAGGCAGAGGAGAGGTaGGCTGGATTCTGGTCCACAGAGGTGGTGGCTGTGACAAACCCT +
Preference number: 1 (lower is better)
Translates to: GDSCLPKAGSQAEER*AGFWSTEVVAVTNP
Trigger: AGGGTTTGTCACAGCCACCACCTCTGTGGACCAGAATCCAGCCCACCTCTCCTCTGCCTGAGAGCCAGCCTTAGGGAGGCAGCTGTCTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR TCA 90 bp TTGGTTTGCAATGCCTCCTTCCACAGGCAGCTCCAGCAGAGGCAGTaGCCACCCGGCTTGACTTCAGGGTCCTTAGGCCCTAGGCCCTCT +
Preference number: 1 (lower is better)
Translates to: LVCNASFHRQLQQRQ*PPGLTSGSLGPRPS
Trigger: AGAGGGCCTAGGGCCTAAGGACCCTGAAGTCAAGCCGGGTGGTCACTGCCTCTGCTGGAGCTGCCTGTGGAAGGAGGCATTGCAAACCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR GCA 90 bp CTTGGACCAGGGAAGCCACCTGACCCTTGCCAGGGTAGGTCTGTGTaGTCATGCCAGCCTCCCTCTGAAGCCTTAGTCTTCCTCCGGCTA +
Preference number: 1 (lower is better)
Translates to: LGPGKPPDPCQGRSV*SCQPPSEALVFLRL
Trigger: TAGCCGGAGGAAGACTAAGGCTTCAGAGGGAGGCTGGCATGAGCACACAGACCTACCCTGGCAAGGGTCAGGTGGCTTCCCTGGTCCAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR GCA 90 bp CTTGCCCTCAATCTCAAGCTTGGACCAGGGAAGCCACCTGACCCTTaGCAGGGTAGGTCTGTGTGCTCATGCCAGCCTCCCTCTGAAGCC +
Preference number: 1 (lower is better)
Translates to: LALNLKLGPGKPPDP*QGRSVCSCQPPSEA
Trigger: GGCTTCAGAGGGAGGCTGGCATGAGCACACAGACCTACCCTGGCAAGGGTCAGGTGGCTTCCCTGGTCCAAGCTTGAGATTGAGGGCAAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR CCA 90 bp ACAGATGGTGAACTCCACCCAGGAGACCAGCCCAGCAGGTGGCAGTaGAGACCAAAGCTGGCTGATCCCAGTGTCATCGGGCCCTCTAAC +
Preference number: 1 (lower is better)
Translates to: TDGELHPGDQPSRWQ*RPKLADPSVIGPSN
Trigger: GTTAGAGGGCCCGATGACACTGGGATCAGCCAGCTTTGGTCTCCACTGCCACCTGCTGGGCTGGTCTCCTGGGTGGAGTTCACCATCTGT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR CCA 90 bp GGAAGCAGTCACAGAATGCTTGGACCCCAAGAACCTGACCATTCCTaGCCTTGCCCTCCAGCTTGGACGCCAGGCACCTTGCTGAGCAGC +
Preference number: 1 (lower is better)
Translates to: GSSHRMLGPQEPDHS*PCPPAWTPGTLLSS
Trigger: GCTGCTCAGCAAGGTGCCTGGCGTCCAAGCTGGAGGGCAAGGCCAGGAATGGTCAGGTTCTTGGGGTCCAAGCATTCTGTGACTGCTTCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR GCA 90 bp CCATTCCTCATTCCCCGCCACTCCCGATGCCTCCTCAGGAGGTGTTaGTGGGTCTGTCCCAGACCATACTCCAGGCTCATATCCTCAGAG +
Preference number: 1 (lower is better)
Translates to: PFLIPRHSRCLLRRC*WVCPRPYSRLISSE
Trigger: CTCTGAGGATATGAGCCTGGAGTATGGTCTGGGACAGACCCAGCAACACCTCCTGAGGAGGCATCGGGAGTGGCGGGGAATGAGGAATGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR TCA 90 bp CACCTAGCCCTAGGGAAGCGCATCTCTGTTCTGGAAGGAGCGCCGTaGGGTAGCTATGTCTTGTCCTCATTTCTCCAGGGCCTGGCCTGT +
Preference number: 1 (lower is better)
Translates to: HLALGKRISVLEGAP*GSYVLSSFLQGLAC
Trigger: ACAGGCCAGGCCCTGGAGAAATGAGGACAAGACATAGCTACCTCACGGCGCTCCTTCCAGAACAGAGATGCGCTTCCCTAGGGCTAGGTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR GCA 90 bp AAACAGGCCAGGAGCATATGGGTAAAGTGCCTGGCACCAAGAGGGTaGTCAGTAAGTGGCAGTGGTGATGTGGGCAGAAGTGGAGAAGCA +
Preference number: 1 (lower is better)
Translates to: KQARSIWVKCLAPRG*SVSGSGDVGRSGEA
Trigger: TGCTTCTCCACTTCTGCCCACATCACCACTGCCACTTACTGAGCACCCTCTTGGTGCCAGGCACTTTACCCATATGCTCCTGGCCTGTTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR GCA 90 bp GTGGGCTGGATTCTGGTCCACAGAGGTGGTGGCTGTGACAAACCCTaGTCCCTCAGCAATGACCTTATCCACAACTTGGCTCATTTTGGC +
Preference number: 1 (lower is better)
Translates to: VGWILVHRGGGCDKP*SLSNDLIHNLAHFG
Trigger: GCCAAAATGAGCCAAGTTGTGGATAAGGTCATTGCTGAGGGAGCAGGGTTTGTCACAGCCACCACCTCTGTGGACCAGAATCCAGCCCAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR TCA 90 bp GACAGCCGCTGGCATTCCAGACTTAACCAGGCCCTCTCCAGCTGTTaGCATTGCTGTGAGGCCTTGTGGGAGCTGATGTCATTACACAAA +
Preference number: 1 (lower is better)
Translates to: DSRWHSRLNQALSSC*HCCEALWELMSLHK
Trigger: TTTGTGTAATGACATCAGCTCCCACAAGGCCTCACAGCAATGTCAACAGCTGGAGAGGGCCTGGTTAAGTCTGGAATGCCAGCGGCTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR GCA 90 bp AAGGCTAAAGGGGCCTGGGAAGCAACCAGAAGGGAAGCTTGGAGCTaGCTGCGTGAGGACATTAAGTCTCTAAGAGAAAAGAGAGCTAGG +
Preference number: 1 (lower is better)
Translates to: KAKGAWEATRREAWS*LREDIKSLREKRAR
Trigger: CCTAGCTCTCTTTTCTCTTAGAGACTTAATGTCCTCACGCAGGCAGCTCCAAGCTTCCCTTCTGGTTGCTTCCCAGGCCCCTTTAGCCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR CCA 90 bp CAGGGAAAGGCTAAAGGGGCCTGGGAAGCAACCAGAAGGGAAGCTTaGAGCTGCCTGCGTGAGGACATTAAGTCTCTAAGAGAAAAGAGA +
Preference number: 1 (lower is better)
Translates to: QGKAKGAWEATRREA*SCLREDIKSLREKR
Trigger: TCTCTTTTCTCTTAGAGACTTAATGTCCTCACGCAGGCAGCTCCAAGCTTCCCTTCTGGTTGCTTCCCAGGCCCCTTTAGCCTTTCCCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR CCA 90 bp GGCCCATTAGTGAGCCTATCTTGCCCACTCTCTAGGTTTCCTGGATaGAGTCCTTCAAGTGTTGAGACCCTAAAGGAACCATTCCCCAGG +
Preference number: 1 (lower is better)
Translates to: GPLVSLSCPLSRFPG*SPSSVETLKEPFPR
Trigger: CCTGGGGAATGGTTCCTTTAGGGTCTCAACACTTGAAGGACTCCATCCAGGAAACCTAGAGAGTGGGCAAGATAGGCTCACTAATGGGCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR CCA 90 bp TGTCATAAAAAGGGCTGTTTCCAAGTTTCCAGCAAGGAAACTCTCTaGGAGGTTTTGGTTTGCAATGCCTCCTTCCACAGGCAGCTCCAG +
Preference number: 1 (lower is better)
Translates to: CHKKGCFQVSSKETL*EVLVCNASFHRQLQ
Trigger: CTGGAGCTGCCTGTGGAAGGAGGCATTGCAAACCAAAACCTCCCAGAGAGTTTCCTTGCTGGAAACTTGGAAACAGCCCTTTTTATGACA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR CCA 90 bp AGCATTAGACATGCTGGTACAGAAATGAGACCCCTGCTGTACAGCTaGATGTTATTTGCTACAGATGGTACCCAACAAACCATACTGGCT +
Preference number: 1 (lower is better)
Translates to: SIRHAGTEMRPLLYS*MLFATDGTQQTILA
Trigger: AGCCAGTATGGTTTGTTGGGTACCATCTGTAGCAAATAACATCCAGCTGTACAGCAGGGGTCTCATTTCTGTACCAGCATGTCTAATGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR GCA 90 bp GGAAGCCACCTGACCCTTGCCAGGGTAGGTCTGTGTGCTCATGCCAGCCTCCCTAAGGCTGCCAGCCTTTaGCAGCGCCCTGCCCGCCCT +
Preference number: 2 (lower is better)
Translates to: GSHLTLARVGLCAHASLPKAASL*QRPARP
Trigger: AGGGCGGGCAGGGCGCTGGCAAAGGCTGGCAGCCTT...AGGGAGGCTGGCATGAGCACACAGACCTACCCTGGCAAGGGTCAGGTGGCTTCC
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR GCA 90 bp GGAAGCCACCTGACCCTTGCCAGGGTAGGTCTGTGTGCTCATGCCAGCCTCCCTGGCCAAGTCCAAGGCTaGCAGCCTTTGCCAGCGCCC +
Preference number: 2 (lower is better)
Translates to: GSHLTLARVGLCAHASLPGQVQG*QPLPAP
Trigger: GGGCGCTGGCAAAGGCTGGCAGCCTTGGACTTGGCC...AGGGAGGCTGGCATGAGCACACAGACCTACCCTGGCAAGGGTCAGGTGGCTTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR GCA 90 bp GCAGCTCCAGCAGAGGCAGTGACCACCCGGCTTGACTTCAGGGTCCTTAGGCCCTGGTGGTGGATTGGTTaGCCCTGCCCAGGCTGCAGG +
Preference number: 2 (lower is better)
Translates to: AAPAEAVTTRLDFRVLRPWWWIG*PCPGCR
Trigger: CCTGCAGCCTGGGCAGGGGCAACCAATCCACCACCA...GGGCCTAAGGACCCTGAAGTCAAGCCGGGTGGTCACTGCCTCTGCTGGAGCTGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR GCA 90 bp CAGCTAAGCCACCTCTCCAGGCCCTCTCAGATGGCCATGCCTGTCTTCCTGGATAAGGCTGCCAGCCTTTaGCAGCGCCCTGCCCGCCCT +
Preference number: 2 (lower is better)
Translates to: QLSHLSRPSQMAMPVFLDKAASL*QRPARP
Trigger: AGGGCGGGCAGGGCGCTGGCAAAGGCTGGCAGCCTT...ATCCAGGAAGACAGGCATGGCCATCTGAGAGGGCCTGGAGAGGTGGCTTAGCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR TCA 90 bp GGAAGCCACCTGACCCTTGCCAGGGTAGGTCTGTGTGCTCATGCCAGCCTCCCTTGGACCCCAAGAACCTaGCCATTCCTGGCCTTGCCC +
Preference number: 2 (lower is better)
Translates to: GSHLTLARVGLCAHASLPWTPRT*PFLALP
Trigger: GGGCAAGGCCAGGAATGGTCAGGTTCTTGGGGTCCA...AGGGAGGCTGGCATGAGCACACAGACCTACCCTGGCAAGGGTCAGGTGGCTTCC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR CCA 90 bp GCCTGGGGACCTCCACAAAGAAGGCAGCCAGAAAGGAATAGACCAGACTGCCCACTGGGCCAGCCCCACTaGAGTAGAGCAGGCCCCAGG +
Preference number: 2 (lower is better)
Translates to: AWGPPQRRQPERNRPDCPLGQPH*SRAGPR
Trigger: CCTGGGGCCTGCTCTACTCCAGTGGGGCTGGCCCAG...TGGGCAGTCTGGTCTATTCCTTTCTGGCTGCCTTCTTTGTGGAGGTCCCCAGGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR GCA 90 bp CAGCTAAGCCACCTCTCCAGGCCCTCTCAGATGGCCATGCCTGTCTTCCTGGATGACCATTCCTGGCCTTaGCCTCCAGCTTGGACGCCA +
Preference number: 2 (lower is better)
Translates to: QLSHLSRPSQMAMPVFLDDHSWP*PPAWTP
Trigger: TGGCGTCCAAGCTGGAGGGCAAGGCCAGGAATGGTC...ATCCAGGAAGACAGGCATGGCCATCTGAGAGGGCCTGGAGAGGTGGCTTAGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR GCA 90 bp AAAGGAATAGACCAGACTGCCCAGGCTAGACCAAGACAGCTGGGAGCTAGAGTGGGCCAAGTCCAAGGCTaGCAGCCTTTGCCAGCGCCC +
Preference number: 2 (lower is better)
Translates to: KGIDQTAQARPRQLGARVGQVQG*QPLPAP
Trigger: GGGCGCTGGCAAAGGCTGGCAGCCTTGGACTTGGCC...CACTCTAGCTCCCAGCTGTCTTGGTCTAGCCTGGGCAGTCTGGTCTATTCCTTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR GCA 90 bp CAGCTAAGCCACCTCTCCAGGCCCTCTCAGATGGCCATGCCTGTCTTCCTGGATTGCCCCTGCCCAGGCTaGAGGCCCAAAAATTCACAG +
Preference number: 2 (lower is better)
Translates to: QLSHLSRPSQMAMPVFLDCPCPG*RPKNSQ
Trigger: CTGTGAATTTTTGGGCCTGCAGCCTGGGCAGGGGCA...ATCCAGGAAGACAGGCATGGCCATCTGAGAGGGCCTGGAGAGGTGGCTTAGCTG
59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR CCA 90 bp GAGACTGGACTCCAGGGTTCAAGGGTGGAAGCTGGCCAGAGCATTAGACATGCTCCTTGCCCTCCAGCTTaGACGCCAGGCACCTTGCTG +
Preference number: 2 (lower is better)
Translates to: ETGLQGSRVEAGQSIRHAPCPPA*TPGTLL
Trigger: CAGCAAGGTGCCTGGCGTCCAAGCTGGAGGGCAAGG...AGCATGTCTAATGCTCTGGCCAGCTTCCACCCTTGAACCCTGGAGTCCAGTCTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR CCA 90 bp CAGCTAAGCCACCTCTCCAGGCCCTCTCAGATGGCCATGCCTGTCTTCCTGGATGCATACAGGAGGGCCTaGGGACCTCCACAAAGAAGG +
Preference number: 2 (lower is better)
Translates to: QLSHLSRPSQMAMPVFLDAYRRA*GPPQRR
Trigger: CCTTCTTTGTGGAGGTCCCCAGGCCCTCCTGTATGC...ATCCAGGAAGACAGGCATGGCCATCTGAGAGGGCCTGGAGAGGTGGCTTAGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR CAA 90 bp TCCATTCCTCATTCCCCGCCACTCCCGATGCCTCCTCAGGAGGTGTaGCTGGGTCTGTCCCAGACCATACTCCAGGCTCATATCCTCAGA +
Preference number: 2 (lower is better)
Translates to: SIPHSPPLPMPPQEV*LGLSQTILQAHILR
Trigger: TCTGAGGATATGAGCCTGGAGTATGGTCTGGGACAGACCCAGCAACACCTCCTGAGGAGGCATCGGGAGTGGCGGGGAATGAGGAATGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR TCA 90 bp GCCTGGGGACCTCCACAAAGAAGGCAGCCAGAAAGGAATAGACCAGACTGCCCACTGGAAGGAGCGCCGTaGGGTAGCTATGTCTTGTCC +
Preference number: 2 (lower is better)
Translates to: AWGPPQRRQPERNRPDCPLEGAP*GSYVLS
Trigger: GGACAAGACATAGCTACCTCACGGCGCTCCTTCCAG...TGGGCAGTCTGGTCTATTCCTTTCTGGCTGCCTTCTTTGTGGAGGTCCCCAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR TCA 90 bp TTGCCCTCAATCTCAAGCTTGGACCAGGGAAGCCACCTGACCCTTGCCAGGGTAGCCCTCTCCAGCTGTTaGCATTGCTGTGAGGCCTTG +
Preference number: 2 (lower is better)
Translates to: LPSISSLDQGSHLTLARVALSSC*HCCEAL
Trigger: CAAGGCCTCACAGCAATGTCAACAGCTGGAGAGGGC...TACCCTGGCAAGGGTCAGGTGGCTTCCCTGGTCCAAGCTTGAGATTGAGGGCAA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR CCA 90 bp GCAGGCCCCAGGAGAACTCTCCCCTCCCTACAGATGGTGAACTCCACCCAGGAGCCTGTTGTCAGAGTCTaGAGTCCTGTGGGAATTCCT +
Preference number: 2 (lower is better)
Translates to: AGPRRTLPSLQMVNSTQEPVVRV*SPVGIP
Trigger: AGGAATTCCCACAGGACTCCAGACTCTGACAACAGG...CTCCTGGGTGGAGTTCACCATCTGTAGGGAGGGGAGAGTTCTCCTGGGGCCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR CCA 90 bp GAGACTGGACTCCAGGGTTCAAGGGTGGAAGCTGGCCAGAGCATTAGACATGCTGACCAGCCCAGCAGGTaGCAGTGGAGACCAAAGCTG +
Preference number: 2 (lower is better)
Translates to: ETGLQGSRVEAGQSIRHADQPSR*QWRPKL
Trigger: CAGCTTTGGTCTCCACTGCCACCTGCTGGGCTGGTC...AGCATGTCTAATGCTCTGGCCAGCTTCCACCCTTGAACCCTGGAGTCCAGTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR CCA 90 bp AAAGGAATAGACCAGACTGCCCAGGCTAGACCAAGACAGCTGGGAGCTAGAGTGCCTTGCCCTCCAGCTTaGACGCCAGGCACCTTGCTG +
Preference number: 2 (lower is better)
Translates to: KGIDQTAQARPRQLGARVPCPPA*TPGTLL
Trigger: CAGCAAGGTGCCTGGCGTCCAAGCTGGAGGGCAAGG...CACTCTAGCTCCCAGCTGTCTTGGTCTAGCCTGGGCAGTCTGGTCTATTCCTTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR CCA 90 bp GGAAGCCACCTGACCCTTGCCAGGGTAGGTCTGTGTGCTCATGCCAGCCTCCCTCTAGACCAAGACAGCTaGGAGCTAGAGTGGGTTTCT +
Preference number: 2 (lower is better)
Translates to: GSHLTLARVGLCAHASLPLDQDS*ELEWVS
Trigger: AGAAACCCACTCTAGCTCCCAGCTGTCTTGGTCTAG...AGGGAGGCTGGCATGAGCACACAGACCTACCCTGGCAAGGGTCAGGTGGCTTCC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR CCA 90 bp GGTTTCTTAACCAAGGAGTCTATGTCCCTTTTCTGGGGAGCCAGCAGTGAGGGCTGTCTGGTGGTGGATTaGTTGCCCCTGCCCAGGCTG +
Preference number: 2 (lower is better)
Translates to: GFLTKESMSLFWGASSEGCLVVD*LPLPRL
Trigger: CAGCCTGGGCAGGGGCAACCAATCCACCACCAGACA...GCCCTCACTGCTGGCTCCCCAGAAAAGGGACATAGACTCCTTGGTTAAGAAACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR CCA 90 bp TTGCCCTCAATCTCAAGCTTGGACCAGGGAAGCCACCTGACCCTTGCCAGGGTACCCTTCCCCCAAGCCTaGTTCAAACTGCCTAGACAG +
Preference number: 2 (lower is better)
Translates to: LPSISSLDQGSHLTLARVPFPQA*FKLPRQ
Trigger: CTGTCTAGGCAGTTTGAACCAGGCTTGGGGGAAGGG...TACCCTGGCAAGGGTCAGGTGGCTTCCCTGGTCCAAGCTTGAGATTGAGGGCAA
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR CCA 90 bp GAGACTGGACTCCAGGGTTCAAGGGTGGAAGCTGGCCAGAGCATTAGACATGCTGCATACAGGAGGGCCTaGGGACCTCCACAAAGAAGG +
Preference number: 2 (lower is better)
Translates to: ETGLQGSRVEAGQSIRHAAYRRA*GPPQRR
Trigger: CCTTCTTTGTGGAGGTCCCCAGGCCCTCCTGTATGC...AGCATGTCTAATGCTCTGGCCAGCTTCCACCCTTGAACCCTGGAGTCCAGTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR TCA 90 bp GGGGGAAGTCTAGTTAAGAGACTTCGCTGGATACCAGGTGAGACTGGACTCCAGCTGGAAGGAGCGCCGTaGGGTAGCTATGTCTTGTCC +
Preference number: 2 (lower is better)
Translates to: GGSLVKRLRWIPGETGLQLEGAP*GSYVLS
Trigger: GGACAAGACATAGCTACCTCACGGCGCTCCTTCCAG...CTGGAGTCCAGTCTCACCTGGTATCCAGCGAAGTCTCTTAACTAGACTTCCCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR TCA 90 bp TTGCCCTCAATCTCAAGCTTGGACCAGGGAAGCCACCTGACCCTTGCCAGGGTAATGAAACCAATTTCCTaGCTGAGAGGGCCAGGCCTC +
Preference number: 2 (lower is better)
Translates to: LPSISSLDQGSHLTLARVMKPIS*LRGPGL
Trigger: GAGGCCTGGCCCTCTCAGTCAGGAAATTGGTTTCAT...TACCCTGGCAAGGGTCAGGTGGCTTCCCTGGTCCAAGCTTGAGATTGAGGGCAA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR GCA 90 bp CAGCTAAGCCACCTCTCCAGGCCCTCTCAGATGGCCATGCCTGTCTTCCTGGATGGTTTTGGTTTGCAATaGCTCCTTCCACAGGCAGCT +
Preference number: 2 (lower is better)
Translates to: QLSHLSRPSQMAMPVFLDGFGLQ*LLPQAA
Trigger: AGCTGCCTGTGGAAGGAGGCATTGCAAACCAAAACC...ATCCAGGAAGACAGGCATGGCCATCTGAGAGGGCCTGGAGAGGTGGCTTAGCTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR GCA 90 bp CAGCTAAGCCACCTCTCCAGGCCCTCTCAGATGGCCATGCCTGTCTTCCTGGATAAGCTTGGAGCTGCCTaGGTGAGGACATTAAGTCTC +
Preference number: 2 (lower is better)
Translates to: QLSHLSRPSQMAMPVFLDKLGAA*VRTLSL
Trigger: GAGACTTAATGTCCTCACGCAGGCAGCTCCAAGCTT...ATCCAGGAAGACAGGCATGGCCATCTGAGAGGGCCTGGAGAGGTGGCTTAGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR CCA 90 bp GAGACTGGACTCCAGGGTTCAAGGGTGGAAGCTGGCCAGAGCATTAGACATGCTTCTATGTCCCTTTTCTaGGGAGCCAGCAGTGAGGGC +
Preference number: 2 (lower is better)
Translates to: ETGLQGSRVEAGQSIRHASMSLF*GASSEG
Trigger: GCCCTCACTGCTGGCTCCCCAGAAAAGGGACATAGA...AGCATGTCTAATGCTCTGGCCAGCTTCCACCCTTGAACCCTGGAGTCCAGTCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR CCA 90 bp CAGCTAAGCCACCTCTCCAGGCCCTCTCAGATGGCCATGCCTGTCTTCCTGGATTTCAGGGCAGCCAAGTaGGCAGGAGAAATGAAACCA +
Preference number: 2 (lower is better)
Translates to: QLSHLSRPSQMAMPVFLDFRAAK*AGEMKP
Trigger: TGGTTTCATTTCTCCTGCCCACTTGGCTGCCCTGAA...ATCCAGGAAGACAGGCATGGCCATCTGAGAGGGCCTGGAGAGGTGGCTTAGCTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR CCA 90 bp GAGACTGGACTCCAGGGTTCAAGGGTGGAAGCTGGCCAGAGCATTAGACATGCTCTCAGGAGGTGTTGCTaGGTCTGTCCCAGACCATAC +
Preference number: 2 (lower is better)
Translates to: ETGLQGSRVEAGQSIRHALRRCC*VCPRPY
Trigger: GTATGGTCTGGGACAGACCCAGCAACACCTCCTGAG...AGCATGTCTAATGCTCTGGCCAGCTTCCACCCTTGAACCCTGGAGTCCAGTCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR TCA 90 bp AGACATGCTGGTACAGAAATGAGACCCCTGCTGTACAGCTGGATGTTATTTGCTGCAGCGACCCTACCCTaGCTCAGGCAAGCCCCTTCC +
Preference number: 2 (lower is better)
Translates to: RHAGTEMRPLLYSWMLFAAATLP*LRQAPS
Trigger: GGAAGGGGCTTGCCTGAGTCAGGGTAGGGTCGCTGC...AGCAAATAACATCCAGCTGTACAGCAGGGGTCTCATTTCTGTACCAGCATGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR TCA 90 bp GAGACTGGACTCCAGGGTTCAAGGGTGGAAGCTGGCCAGAGCATTAGACATGCTAACCAATTTCCTGACTaGGAGGGCCAGGCCTCTCAT +
Preference number: 2 (lower is better)
Translates to: ETGLQGSRVEAGQSIRHANQFPD*EGQASH
Trigger: ATGAGAGGCCTGGCCCTCTCAGTCAGGAAATTGGTT...AGCATGTCTAATGCTCTGGCCAGCTTCCACCCTTGAACCCTGGAGTCCAGTCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR CCA 90 bp TTGCCCTCAATCTCAAGCTTGGACCAGGGAAGCCACCTGACCCTTGCCAGGGTACCTGTTGTCAGAGTCTaGAGTCCTGTGGGAATTCCT +
Preference number: 2 (lower is better)
Translates to: LPSISSLDQGSHLTLARVPVVRV*SPVGIP
Trigger: AGGAATTCCCACAGGACTCCAGACTCTGACAACAGG...TACCCTGGCAAGGGTCAGGTGGCTTCCCTGGTCCAAGCTTGAGATTGAGGGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR CCA 90 bp GCCTGGGGACCTCCACAAAGAAGGCAGCCAGAAAGGAATAGACCAGACTGCCCACTCTCTGGGAGGTTTTaGTTTGCAATGCCTCCTTCC +
Preference number: 2 (lower is better)
Translates to: AWGPPQRRQPERNRPDCPLSGRF*FAMPPS
Trigger: GGAAGGAGGCATTGCAAACCAAAACCTCCCAGAGAG...TGGGCAGTCTGGTCTATTCCTTTCTGGCTGCCTTCTTTGTGGAGGTCCCCAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR CCA 90 bp GGTTTCTTAACCAAGGAGTCTATGTCCCTTTTCTGGGGAGCCAGCAGTGAGGGCCCCTTCCCCCAAGCCTaGTTCAAACTGCCTAGACAG +
Preference number: 2 (lower is better)
Translates to: GFLTKESMSLFWGASSEGPFPQA*FKLPRQ
Trigger: CTGTCTAGGCAGTTTGAACCAGGCTTGGGGGAAGGG...GCCCTCACTGCTGGCTCCCCAGAAAAGGGACATAGACTCCTTGGTTAAGAAACC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR CCA 90 bp CAGCTAAGCCACCTCTCCAGGCCCTCTCAGATGGCCATGCCTGTCTTCCTGGATGTGACCTTGGGCACGTaGACATGTCTTTTTACTGGT +
Preference number: 2 (lower is better)
Translates to: QLSHLSRPSQMAMPVFLDVTLGT*TCLFTG
Trigger: ACCAGTAAAAAGACATGTCCACGTGCCCAAGGTCAC...ATCCAGGAAGACAGGCATGGCCATCTGAGAGGGCCTGGAGAGGTGGCTTAGCTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR CAA 90 bp CTGTTTCCAAGTTTCCAGCAAGGAAACTCTCTGGGAGGTTTTGGTTaGCAATGCCTCCTTCCACAGGCAGCTCCAGCAGAGGCAGTGACC +
Preference number: 2 (lower is better)
Translates to: LFPSFQQGNSLGGFG*QCLLPQAAPAEAVT
Trigger: GGTCACTGCCTCTGCTGGAGCTGCCTGTGGAAGGAGGCATTGCAAACCAAAACCTCCCAGAGAGTTTCCTTGCTGGAAACTTGGAAACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR CAA 90 bp GAACCATTCCCCAGGTCAGTCCTGAAGGGTCTCCTCATTTCAGTCTaGTTCCAGCTCAGGGGCAATTCTAAGACAGCCTGTACCCACTGC +
Preference number: 2 (lower is better)
Translates to: EPFPRSVLKGLLISV*FQLRGNSKTACTHC
Trigger: GCAGTGGGTACAGGCTGTCTTAGAATTGCCCCTGAGCTGGAACAAGACTGAAATGAGGAGACCCTTCAGGACTGACCTGGGGAATGGTTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR TCA 90 bp CTGTACAGCTGGATGTTATTTGCTACAGATGGTACCCAACAAACCATACTGGCTGCAGCGACCCTACCCTaGCTCAGGCAAGCCCCTTCC +
Preference number: 2 (lower is better)
Translates to: LYSWMLFATDGTQQTILAAATLP*LRQAPS
Trigger: GGAAGGGGCTTGCCTGAGTCAGGGTAGGGTCGCTGC...AGCCAGTATGGTTTGTTGGGTACCATCTGTAGCAAATAACATCCAGCTGTACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR GCA 90 bp GCTGTTTCCAAGTTTCCAGCAAGGAAACTCTCTGGGAGGTTTTGGTTTGCAATGTGGTGGTGGATTGGTTaGCCCTGCCCAGGCTGCAGG +
Preference number: 2 (lower is better)
Translates to: AVSKFPARKLSGRFWFAMWWWIG*PCPGCR
Trigger: CCTGCAGCCTGGGCAGGGGCAACCAATCCACCACCA...CATTGCAAACCAAAACCTCCCAGAGAGTTTCCTTGCTGGAAACTTGGAAACAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR GCA 90 bp GAGACTGGACTCCAGGGTTCAAGGGTGGAAGCTGGCCAGAGCATTAGACATGCTTGGGAGGTTTTGGTTTaGAATGCCTCCTTCCACAGG +
Preference number: 2 (lower is better)
Translates to: ETGLQGSRVEAGQSIRHAWEVLV*NASFHR
Trigger: CCTGTGGAAGGAGGCATTGCAAACCAAAACCTCCCA...AGCATGTCTAATGCTCTGGCCAGCTTCCACCCTTGAACCCTGGAGTCCAGTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR TCA 90 bp TTGCCCTCAATCTCAAGCTTGGACCAGGGAAGCCACCTGACCCTTGCCAGGGTAAGGCCTTGTGGGAGCTaGTGTCATTACACAAATAGT +
Preference number: 2 (lower is better)
Translates to: LPSISSLDQGSHLTLARVRPCGS*CHYTNS
Trigger: ACTATTTGTGTAATGACATCAGCTCCCACAAGGCCT...TACCCTGGCAAGGGTCAGGTGGCTTCCCTGGTCCAAGCTTGAGATTGAGGGCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR TCA 90 bp AGACATGCTGGTACAGAAATGAGACCCCTGCTGTACAGCTGGATGTTATTTGCTTGGACCCCAAGAACCTaGCCATTCCTGGCCTTGCCC +
Preference number: 2 (lower is better)
Translates to: RHAGTEMRPLLYSWMLFAWTPRT*PFLALP
Trigger: GGGCAAGGCCAGGAATGGTCAGGTTCTTGGGGTCCA...AGCAAATAACATCCAGCTGTACAGCAGGGGTCTCATTTCTGTACCAGCATGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR TCA 90 bp GGGGGAAGTCTAGTTAAGAGACTTCGCTGGATACCAGGTGAGACTGGACTCCAGATGCTGGTACAGAAATaGGACCCCTGCTGTACAGCT +
Preference number: 2 (lower is better)
Translates to: GGSLVKRLRWIPGETGLQMLVQK*DPCCTA
Trigger: AGCTGTACAGCAGGGGTCTCATTTCTGTACCAGCAT...CTGGAGTCCAGTCTCACCTGGTATCCAGCGAAGTCTCTTAACTAGACTTCCCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR CCA 90 bp AGACATGCTGGTACAGAAATGAGACCCCTGCTGTACAGCTGGATGTTATTTGCTTGTCTGGTGGTGGATTaGTTGCCCCTGCCCAGGCTG +
Preference number: 2 (lower is better)
Translates to: RHAGTEMRPLLYSWMLFACLVVD*LPLPRL
Trigger: CAGCCTGGGCAGGGGCAACCAATCCACCACCAGACA...AGCAAATAACATCCAGCTGTACAGCAGGGGTCTCATTTCTGTACCAGCATGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR CCA 90 bp CAGCTAAGCCACCTCTCCAGGCCCTCTCAGATGGCCATGCCTGTCTTCCTGGATAGCAAGGAAACTCTCTaGGAGGTTTTGGTTTGCAAT +
Preference number: 2 (lower is better)
Translates to: QLSHLSRPSQMAMPVFLDSKETL*EVLVCN
Trigger: ATTGCAAACCAAAACCTCCCAGAGAGTTTCCTTGCT...ATCCAGGAAGACAGGCATGGCCATCTGAGAGGGCCTGGAGAGGTGGCTTAGCTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR GCA 90 bp AGACATGCTGGTACAGAAATGAGACCCCTGCTGTACAGCTGGATGTTATTTGCTGAGTCTGAGTACCGGTaGTGGTGTGACCTTGGGCAC +
Preference number: 2 (lower is better)
Translates to: RHAGTEMRPLLYSWMLFAESEYR*WCDLGH
Trigger: GTGCCCAAGGTCACACCAGCACCGGTACTCAGACTC...AGCAAATAACATCCAGCTGTACAGCAGGGGTCTCATTTCTGTACCAGCATGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR GCA 90 bp AGACATGCTGGTACAGAAATGAGACCCCTGCTGTACAGCTGGATGTTATTTGCTAGGTCTGTGTGCTCATaGCAGCCTCCCTCTGAAGCC +
Preference number: 2 (lower is better)
Translates to: RHAGTEMRPLLYSWMLFARSVCS*QPPSEA
Trigger: GGCTTCAGAGGGAGGCTGGCATGAGCACACAGACCT...AGCAAATAACATCCAGCTGTACAGCAGGGGTCTCATTTCTGTACCAGCATGTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR TCA 90 bp CTGTACAGCTGGATGTTATTTGCTACAGATGGTACCCAACAAACCATACTGGCTGCCCTCTCCAGCTGTTaGCATTGCTGTGAGGCCTTG +
Preference number: 2 (lower is better)
Translates to: LYSWMLFATDGTQQTILAALSSC*HCCEAL
Trigger: CAAGGCCTCACAGCAATGTCAACAGCTGGAGAGGGC...AGCCAGTATGGTTTGTTGGGTACCATCTGTAGCAAATAACATCCAGCTGTACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR GCA 90 bp CTGTACAGCTGGATGTTATTTGCTACAGATGGTACCCAACAAACCATACTGGCTGAGTCTGAGTACCGGTaGTGGTGTGACCTTGGGCAC +
Preference number: 2 (lower is better)
Translates to: LYSWMLFATDGTQQTILAESEYR*WCDLGH
Trigger: GTGCCCAAGGTCACACCAGCACCGGTACTCAGACTC...AGCCAGTATGGTTTGTTGGGTACCATCTGTAGCAAATAACATCCAGCTGTACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR GCA 90 bp AGACATGCTGGTACAGAAATGAGACCCCTGCTGTACAGCTGGATGTTATTTGCTTGGGAGGTTTTGGTTTaGAATGCCTCCTTCCACAGG +
Preference number: 2 (lower is better)
Translates to: RHAGTEMRPLLYSWMLFAWEVLV*NASFHR
Trigger: CCTGTGGAAGGAGGCATTGCAAACCAAAACCTCCCA...AGCAAATAACATCCAGCTGTACAGCAGGGGTCTCATTTCTGTACCAGCATGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR GCA 90 bp CTGTACAGCTGGATGTTATTTGCTACAGATGGTACCCAACAAACCATACTGGCTAAGCCTGGTTCAAACTaGCTAGACAGCCGCTGGCAT +
Preference number: 2 (lower is better)
Translates to: LYSWMLFATDGTQQTILAKPGSN*LDSRWH
Trigger: ATGCCAGCGGCTGTCTAGGCAGTTTGAACCAGGCTT...AGCCAGTATGGTTTGTTGGGTACCATCTGTAGCAAATAACATCCAGCTGTACAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR GCA 90 bp AGACATGCTGGTACAGAAATGAGACCCCTGCTGTACAGCTGGATGTTATTTGCTAAGCTTGGAGCTGCCTaGGTGAGGACATTAAGTCTC +
Preference number: 2 (lower is better)
Translates to: RHAGTEMRPLLYSWMLFAKLGAA*VRTLSL
Trigger: GAGACTTAATGTCCTCACGCAGGCAGCTCCAAGCTT...AGCAAATAACATCCAGCTGTACAGCAGGGGTCTCATTTCTGTACCAGCATGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR GCA 90 bp AGACATGCTGGTACAGAAATGAGACCCCTGCTGTACAGCTGGATGTTATTTGCTCTGGATAGTGGACCTTaGCCTCAATCTCAAGCTTGG +
Preference number: 2 (lower is better)
Translates to: RHAGTEMRPLLYSWMLFALDSGP*PQSQAW
Trigger: CCAAGCTTGAGATTGAGGGCAAGGTCCACTATCCAG...AGCAAATAACATCCAGCTGTACAGCAGGGGTCTCATTTCTGTACCAGCATGTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR CCA 90 bp CTGTACAGCTGGATGTTATTTGCTACAGATGGTACCCAACAAACCATACTGGCTTGCTGTGAGGCCTTGTaGGAGCTGATGTCATTACAC +
Preference number: 2 (lower is better)
Translates to: LYSWMLFATDGTQQTILACCEAL*ELMSLH
Trigger: GTGTAATGACATCAGCTCCCACAAGGCCTCACAGCA...AGCCAGTATGGTTTGTTGGGTACCATCTGTAGCAAATAACATCCAGCTGTACAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR CCA 90 bp CTGTACAGCTGGATGTTATTTGCTACAGATGGTACCCAACAAACCATACTGGCTAGCAAGGAAACTCTCTaGGAGGTTTTGGTTTGCAAT +
Preference number: 2 (lower is better)
Translates to: LYSWMLFATDGTQQTILASKETL*EVLVCN
Trigger: ATTGCAAACCAAAACCTCCCAGAGAGTTTCCTTGCT...AGCCAGTATGGTTTGTTGGGTACCATCTGTAGCAAATAACATCCAGCTGTACAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR GCA 72 bp AAACCCCTGACGGCCAAGTCCAAGGCTGCCAGCCTTTaGCAGCGCCCTGCCCGCCCTCCTGGAGCCCGCGCC +
Preference number: 3 (lower is better)
Translates to: KPLTAKSKAASL*QRPARPPGARA
Trigger: GGCGCGGGCTCCAGGAGGGCGGGCAGGGCGCTGGCAAAGGCTGGCAGCCTTGGACTTGGCCGTCAGGGGTTT
72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR CAA 90 bp GCAGGCCCCAGGAGAACTCTCCCCTCCCTACAGATGGTGAACTCCACCCAGGAGCAAGGCTGCCAGCCTTaGCCAGCGCCCTGCCCGCCC +
Preference number: 3 (lower is better)
Translates to: AGPRRTLPSLQMVNSTQEQGCQP*PAPCPP
Trigger: GGGCGGGCAGGGCGCTGGCAAAGGCTGGCAGCCTTG...CTCCTGGGTGGAGTTCACCATCTGTAGGGAGGGGAGAGTTCTCCTGGGGCCTGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR CAA 90 bp GCAGCTCCAGCAGAGGCAGTGACCACCCGGCTTGACTTCAGGGTCCTTAGGCCCCTGGTGGTGGATTGGTaGCCCCTGCCCAGGCTGCAG +
Preference number: 3 (lower is better)
Translates to: AAPAEAVTTRLDFRVLRPLVVDW*PLPRLQ
Trigger: CTGCAGCCTGGGCAGGGGCAACCAATCCACCACCAG...GGGCCTAAGGACCCTGAAGTCAAGCCGGGTGGTCACTGCCTCTGCTGGAGCTGC
66% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR TCA 72 bp GCCACCCCAGCCTCCCTAGGCTTTGCCCTTGGCATCTaGCCCTCCCTCCCATCTGAAGGAGCCGGATGGTCC +
Preference number: 3 (lower is better)
Translates to: ATPASLGFALGI*PSLPSEGAGWS
Trigger: GGACCATCCGGCTCCTTCAGATGGGAGGGAGGGTCAGATGCCAAGGGCAAAGCCTAGGGAGGCTGGGGTGGC
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR CAA 90 bp GCCTGGGGACCTCCACAAAGAAGGCAGCCAGAAAGGAATAGACCAGACTGCCCACAAGGCTGCCAGCCTTaGCCAGCGCCCTGCCCGCCC +
Preference number: 3 (lower is better)
Translates to: AWGPPQRRQPERNRPDCPQGCQP*PAPCPP
Trigger: GGGCGGGCAGGGCGCTGGCAAAGGCTGGCAGCCTTG...TGGGCAGTCTGGTCTATTCCTTTCTGGCTGCCTTCTTTGTGGAGGTCCCCAGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR CCA 72 bp CCCCGCCACTCCCGATGCCTCCTCAGGAGGTGTTGCTaGGTCTGTCCCAGACCATACTCCAGGCTCATATCC +
Preference number: 3 (lower is better)
Translates to: PRHSRCLLRRCC*VCPRPYSRLIS
Trigger: GGATATGAGCCTGGAGTATGGTCTGGGACAGACCCAGCAACACCTCCTGAGGAGGCATCGGGAGTGGCGGGG
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR CCA 72 bp TGCCTCCCTAAGGCTGGCTCTCAGGCAGAGGAGAGGTaGGCTGGATTCTGGTCCACAGAGGTGGTGGCTGTG +
Preference number: 3 (lower is better)
Translates to: CLPKAGSQAEER*AGFWSTEVVAV
Trigger: CACAGCCACCACCTCTGTGGACCAGAATCCAGCCCACCTCTCCTCTGCCTGAGAGCCAGCCTTAGGGAGGCA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR CAA 90 bp GCCTGGGGACCTCCACAAAGAAGGCAGCCAGAAAGGAATAGACCAGACTGCCCACTGGTGGTGGATTGGTaGCCCCTGCCCAGGCTGCAG +
Preference number: 3 (lower is better)
Translates to: AWGPPQRRQPERNRPDCPLVVDW*PLPRLQ
Trigger: CTGCAGCCTGGGCAGGGGCAACCAATCCACCACCAG...TGGGCAGTCTGGTCTATTCCTTTCTGGCTGCCTTCTTTGTGGAGGTCCCCAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR CAA 90 bp TTGCCCTCAATCTCAAGCTTGGACCAGGGAAGCCACCTGACCCTTGCCAGGGTAGCCTTGCCCTCCAGCTaGGACGCCAGGCACCTTGCT +
Preference number: 3 (lower is better)
Translates to: LPSISSLDQGSHLTLARVALPSS*DARHLA
Trigger: AGCAAGGTGCCTGGCGTCCAAGCTGGAGGGCAAGGC...TACCCTGGCAAGGGTCAGGTGGCTTCCCTGGTCCAAGCTTGAGATTGAGGGCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR GCA 72 bp CCACCTGACCCTTGCCAGGGTAGGTCTGTGTGCTCATaGCAGCCTCCCTCTGAAGCCTTAGTCTTCCTCCGG +
Preference number: 3 (lower is better)
Translates to: PPDPCQGRSVCS*QPPSEALVFLR
Trigger: CCGGAGGAAGACTAAGGCTTCAGAGGGAGGCTGGCATGAGCACACAGACCTACCCTGGCAAGGGTCAGGTGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR CCA 72 bp CCGAGTACAGGGAGGCAGGGAAAGGCTAAAGGGGCCTaGGAAGCAACCAGAAGGGAAGCTTGGAGCTGCCTG +
Preference number: 3 (lower is better)
Translates to: PSTGRQGKAKGA*EATRREAWSCL
Trigger: CAGGCAGCTCCAAGCTTCCCTTCTGGTTGCTTCCCAGGCCCCTTTAGCCTTTCCCTGCCTCCCTGTACTCGG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR CCA 72 bp GCTGGCTCTCAGGCAGAGGAGAGGTGGGCTGGATTCTaGTCCACAGAGGTGGTGGCTGTGACAAACCCTGCT +
Preference number: 3 (lower is better)
Translates to: AGSQAEERWAGF*STEVVAVTNPA
Trigger: AGCAGGGTTTGTCACAGCCACCACCTCTGTGGACCAGAATCCAGCCCACCTCTCCTCTGCCTGAGAGCCAGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR GCA 72 bp ATTCCCCGCCACTCCCGATGCCTCCTCAGGAGGTGTTaGTGGGTCTGTCCCAGACCATACTCCAGGCTCATA +
Preference number: 3 (lower is better)
Translates to: IPRHSRCLLRRC*WVCPRPYSRLI
Trigger: TATGAGCCTGGAGTATGGTCTGGGACAGACCCAGCAACACCTCCTGAGGAGGCATCGGGAGTGGCGGGGAAT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR GCA 72 bp GGGAAGCCACCTGACCCTTGCCAGGGTAGGTCTGTGTaGTCATGCCAGCCTCCCTCTGAAGCCTTAGTCTTC +
Preference number: 3 (lower is better)
Translates to: GKPPDPCQGRSV*SCQPPSEALVF
Trigger: GAAGACTAAGGCTTCAGAGGGAGGCTGGCATGAGCACACAGACCTACCCTGGCAAGGGTCAGGTGGCTTCCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR CCA 72 bp CACAGAATGCTTGGACCCCAAGAACCTGACCATTCCTaGCCTTGCCCTCCAGCTTGGACGCCAGGCACCTTG +
Preference number: 3 (lower is better)
Translates to: HRMLGPQEPDHS*PCPPAWTPGTL
Trigger: CAAGGTGCCTGGCGTCCAAGCTGGAGGGCAAGGCCAGGAATGGTCAGGTTCTTGGGGTCCAAGCATTCTGTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR CAA 90 bp CAGCTAAGCCACCTCTCCAGGCCCTCTCAGATGGCCATGCCTGTCTTCCTGGATGGTGCTGGTGTGACCTaGGGCACGTGGACATGTCTT +
Preference number: 3 (lower is better)
Translates to: QLSHLSRPSQMAMPVFLDGAGVT*GTWTCL
Trigger: AAGACATGTCCACGTGCCCAAGGTCACACCAGCACC...ATCCAGGAAGACAGGCATGGCCATCTGAGAGGGCCTGGAGAGGTGGCTTAGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR CAA 90 bp GGGGGAAGTCTAGTTAAGAGACTTCGCTGGATACCAGGTGAGACTGGACTCCAGCCTCCTCAGGAGGTGTaGCTGGGTCTGTCCCAGACC +
Preference number: 3 (lower is better)
Translates to: GGSLVKRLRWIPGETGLQPPQEV*LGLSQT
Trigger: GGTCTGGGACAGACCCAGCAACACCTCCTGAGGAGG...CTGGAGTCCAGTCTCACCTGGTATCCAGCGAAGTCTCTTAACTAGACTTCCCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR TCA 72 bp AGGAAGCAGTCACAGAATGCTTGGACCCCAAGAACCTaGCCATTCCTGGCCTTGCCCTCCAGCTTGGACGCC +
Preference number: 3 (lower is better)
Translates to: RKQSQNAWTPRT*PFLALPSSLDA
Trigger: GGCGTCCAAGCTGGAGGGCAAGGCCAGGAATGGTCAGGTTCTTGGGGTCCAAGCATTCTGTGACTGCTTCCT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR GCA 72 bp CTCAGGCAAGCCCCTTCCCCCAAGCCTGGTTCAAACTaGCTAGACAGCCGCTGGCATTCCAGACTTAACCAG +
Preference number: 3 (lower is better)
Translates to: LRQAPSPKPGSN*LDSRWHSRLNQ
Trigger: CTGGTTAAGTCTGGAATGCCAGCGGCTGTCTAGGCAGTTTGAACCAGGCTTGGGGGAAGGGGCTTGCCTGAG
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR CCA 72 bp TCCCCCAAGCCTGGTTCAAACTGCCTAGACAGCCGCTaGCATTCCAGACTTAACCAGGCCCTCTCCAGCTGT +
Preference number: 3 (lower is better)
Translates to: SPKPGSNCLDSR*HSRLNQALSSC
Trigger: ACAGCTGGAGAGGGCCTGGTTAAGTCTGGAATGCCAGCGGCTGTCTAGGCAGTTTGAACCAGGCTTGGGGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR GCA 72 bp GCCCTCTCAGATGGCCATGCCTGTCTTCCTGGATCTTaGGGCTTTCCACTAGGGAGTCCATTCCTCATTCCC +
Preference number: 3 (lower is better)
Translates to: ALSDGHACLPGS*GFPLGSPFLIP
Trigger: GGGAATGAGGAATGGACTCCCTAGTGGAAAGCCGCAAGATCCAGGAAGACAGGCATGGCCATCTGAGAGGGC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR CCA 72 bp TCTCCAGGCCCTCTCAGATGGCCATGCCTGTCTTCCTaGATCTTGCGGCTTTCCACTAGGGAGTCCATTCCT +
Preference number: 3 (lower is better)
Translates to: SPGPLRWPCLSS*ILRLSTRESIP
Trigger: AGGAATGGACTCCCTAGTGGAAAGCCGCAAGATCCAGGAAGACAGGCATGGCCATCTGAGAGGGCCTGGAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR CCA 72 bp CAGGGGCGTGGGGGAAGTCTAGTTAAGAGACTTCGCTaGATACCAGGTGAGACTGGACTCCAGGGTTCAAGG +
Preference number: 3 (lower is better)
Translates to: QGRGGSLVKRLR*IPGETGLQGSR
Trigger: CCTTGAACCCTGGAGTCCAGTCTCACCTGGTATCCAGCGAAGTCTCTTAACTAGACTTCCCCCACGCCCCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR TCA 72 bp CTAGGGAAGCGCATCTCTGTTCTGGAAGGAGCGCCGTaGGGTAGCTATGTCTTGTCCTCATTTCTCCAGGGC +
Preference number: 3 (lower is better)
Translates to: LGKRISVLEGAP*GSYVLSSFLQG
Trigger: GCCCTGGAGAAATGAGGACAAGACATAGCTACCTCACGGCGCTCCTTCCAGAACAGAGATGCGCTTCCCTAG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR GCA 72 bp GGCGTGACTAGTGTCTGGTGGTGGATTGGTTGCCCCTaGCCAGGCTGCAGGCCCAAAAATTCACAGTTCTTA +
Preference number: 3 (lower is better)
Translates to: GVTSVWWWIGCP*PGCRPKNSQFL
Trigger: TAAGAACTGTGAATTTTTGGGCCTGCAGCCTGGGCAGGGGCAACCAATCCACCACCAGACACTAGTCACGCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR CAA 90 bp GCCTGGGGACCTCCACAAAGAAGGCAGCCAGAAAGGAATAGACCAGACTGCCCAACTCTCTGGGAGGTTTaGGTTTGCAATGCCTCCTTC +
Preference number: 3 (lower is better)
Translates to: AWGPPQRRQPERNRPDCPTLWEV*VCNASF
Trigger: GAAGGAGGCATTGCAAACCAAAACCTCCCAGAGAGT...TGGGCAGTCTGGTCTATTCCTTTCTGGCTGCCTTCTTTGTGGAGGTCCCCAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR CAA 90 bp GGGGGAAGTCTAGTTAAGAGACTTCGCTGGATACCAGGTGAGACTGGACTCCAGGCAGTCACAGAATGCTaGGACCCCAAGAACCTGACC +
Preference number: 3 (lower is better)
Translates to: GGSLVKRLRWIPGETGLQAVTEC*DPKNLT
Trigger: GGTCAGGTTCTTGGGGTCCAAGCATTCTGTGACTGC...CTGGAGTCCAGTCTCACCTGGTATCCAGCGAAGTCTCTTAACTAGACTTCCCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR CAA 90 bp GGTTTCTTAACCAAGGAGTCTATGTCCCTTTTCTGGGGAGCCAGCAGTGAGGGCGCAGTCACAGAATGCTaGGACCCCAAGAACCTGACC +
Preference number: 3 (lower is better)
Translates to: GFLTKESMSLFWGASSEGAVTEC*DPKNLT
Trigger: GGTCAGGTTCTTGGGGTCCAAGCATTCTGTGACTGC...GCCCTCACTGCTGGCTCCCCAGAAAAGGGACATAGACTCCTTGGTTAAGAAACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR CAA 90 bp GGGGGAAGTCTAGTTAAGAGACTTCGCTGGATACCAGGTGAGACTGGACTCCAGCTGTCTTCCTGGATCTaGCGGCTTTCCACTAGGGAG +
Preference number: 3 (lower is better)
Translates to: GGSLVKRLRWIPGETGLQLSSWI*RLSTRE
Trigger: CTCCCTAGTGGAAAGCCGCAAGATCCAGGAAGACAG...CTGGAGTCCAGTCTCACCTGGTATCCAGCGAAGTCTCTTAACTAGACTTCCCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR TCA 72 bp CTCGCCTACTGTGGGAGTGTCAAGAGGGCTAACTGCTaGTGTGCAACTGTGGTGAGGTCAGAGTCTGAGTAC +
Preference number: 3 (lower is better)
Translates to: LAYCGSVKRANC*CATVVRSESEY
Trigger: GTACTCAGACTCTGACCTCACCACAGTTGCACATCAGCAGTTAGCCCTCTTGACACTCCCACAGTAGGCGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR GCA 72 bp GTTTCCAGCAAGGAAACTCTCTGGGAGGTTTTGGTTTaGAATGCCTCCTTCCACAGGCAGCTCCAGCAGAGG +
Preference number: 3 (lower is better)
Translates to: VSSKETLWEVLV*NASFHRQLQQR
Trigger: CCTCTGCTGGAGCTGCCTGTGGAAGGAGGCATTGCAAACCAAAACCTCCCAGAGAGTTTCCTTGCTGGAAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR GCA 72 bp AGGAGCATATGGGTAAAGTGCCTGGCACCAAGAGGGTaGTCAGTAAGTGGCAGTGGTGATGTGGGCAGAAGT +
Preference number: 3 (lower is better)
Translates to: RSIWVKCLAPRG*SVSGSGDVGRS
Trigger: ACTTCTGCCCACATCACCACTGCCACTTACTGAGCACCCTCTTGGTGCCAGGCACTTTACCCATATGCTCCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR GCA 72 bp TGTGCAACTGTGGTGAGGTCAGAGTCTGAGTACCGGTaGTGGTGTGACCTTGGGCACGTGGACATGTCTTTT +
Preference number: 3 (lower is better)
Translates to: CATVVRSESEYR*WCDLGHVDMSF
Trigger: AAAAGACATGTCCACGTGCCCAAGGTCACACCAGCACCGGTACTCAGACTCTGACCTCACCACAGTTGCACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR CCA 72 bp GAGGTAGCTATGTCTTGTCCTCATTTCTCCAGGGCCTaGCCTGTCAATACAGGGTGCTTTCTGCCATGCGCA +
Preference number: 3 (lower is better)
Translates to: EVAMSCPHFSRA*PVNTGCFLPCA
Trigger: TGCGCATGGCAGAAAGCACCCTGTATTGACAGGCCAGGCCCTGGAGAAATGAGGACAAGACATAGCTACCTC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR GCA 72 bp CCAGGCTCATATCCTCAGAGTTCTCTAGAGACAAGCTaGCTGGGTCTCAGTGGTAACCACTATCCCACCCAA +
Preference number: 3 (lower is better)
Translates to: PGSYPQSSLETS*LGLSGNHYPTQ
Trigger: TTGGGTGGGATAGTGGTTACCACTGAGACCCAGGCAGCTTGTCTCTAGAGAACTCTGAGGATATGAGCCTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR GCA 72 bp ATTCTGGTCCACAGAGGTGGTGGCTGTGACAAACCCTaGTCCCTCAGCAATGACCTTATCCACAACTTGGCT +
Preference number: 3 (lower is better)
Translates to: ILVHRGGGCDKP*SLSNDLIHNLA
Trigger: AGCCAAGTTGTGGATAAGGTCATTGCTGAGGGAGCAGGGTTTGTCACAGCCACCACCTCTGTGGACCAGAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR GCA 72 bp CTGTCTGTGAACCACGGCCCATTAGTGAGCCTATCTTaGCCACTCTCTAGGTTTCCTGGATGGAGTCCTTCA +
Preference number: 3 (lower is better)
Translates to: LSVNHGPLVSLS*PLSRFPGWSPS
Trigger: TGAAGGACTCCATCCAGGAAACCTAGAGAGTGGGCAAGATAGGCTCACTAATGGGCCGTGGTTCACAGACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR CAA 90 bp CTGTACAGCTGGATGTTATTTGCTACAGATGGTACCCAACAAACCATACTGGCTGTGTCTGGTGGTGGATaGGTTGCCCCTGCCCAGGCT +
Preference number: 3 (lower is better)
Translates to: LYSWMLFATDGTQQTILAVSGGG*VAPAQA
Trigger: AGCCTGGGCAGGGGCAACCAATCCACCACCAGACAC...AGCCAGTATGGTTTGTTGGGTACCATCTGTAGCAAATAACATCCAGCTGTACAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR GCA 72 bp TCAATAACCATCAAACACAGCGACTGTAGACCACTGTaGCATTCTGTTCCCGCCTCTCAGGACCTCCCTAAC +
Preference number: 3 (lower is better)
Translates to: SITIKHSDCRPL*HSVPASQDLPN
Trigger: GTTAGGGAGGTCCTGAGAGGCGGGAACAGAATGGCACAGTGGTCTACAGTCGCTGTGTTTGATGGTTATTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR CCA 72 bp AGTCTGAGTACCGGTGCTGGTGTGACCTTGGGCACGTaGACATGTCTTTTTACTGGTGAACACGAAGACAAG +
Preference number: 3 (lower is better)
Translates to: SLSTGAGVTLGT*TCLFTGEHEDK
Trigger: CTTGTCTTCGTGTTCACCAGTAAAAAGACATGTCCACGTGCCCAAGGTCACACCAGCACCGGTACTCAGACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR CCA 72 bp AAGGGCTGTTTCCAAGTTTCCAGCAAGGAAACTCTCTaGGAGGTTTTGGTTTGCAATGCCTCCTTCCACAGG +
Preference number: 3 (lower is better)
Translates to: KGCFQVSSKETL*EVLVCNASFHR
Trigger: CCTGTGGAAGGAGGCATTGCAAACCAAAACCTCCCAGAGAGTTTCCTTGCTGGAAACTTGGAAACAGCCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR CCA 72 bp CTACAGATGGTACCCAACAAACCATACTGGCTCTCCTaGATAGTGGACCTTGCCCTCAATCTCAAGCTTGGA +
Preference number: 3 (lower is better)
Translates to: LQMVPNKPYWLS*IVDLALNLKLG
Trigger: TCCAAGCTTGAGATTGAGGGCAAGGTCCACTATCCAGGAGAGCCAGTATGGTTTGTTGGGTACCATCTGTAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR CCA 72 bp GTGAGCCTATCTTGCCCACTCTCTAGGTTTCCTGGATaGAGTCCTTCAAGTGTTGAGACCCTAAAGGAACCA +
Preference number: 3 (lower is better)
Translates to: VSLSCPLSRFPG*SPSSVETLKEP
Trigger: TGGTTCCTTTAGGGTCTCAACACTTGAAGGACTCCATCCAGGAAACCTAGAGAGTGGGCAAGATAGGCTCAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR-3UTR CAA 90 bp CTGTACAGCTGGATGTTATTTGCTACAGATGGTACCCAACAAACCATACTGGCTCTGGGAGGTTTTGGTTaGCAATGCCTCCTTCCACAG +
Preference number: 3 (lower is better)
Translates to: LYSWMLFATDGTQQTILALGGFG*QCLLPQ
Trigger: CTGTGGAAGGAGGCATTGCAAACCAAAACCTCCCAG...AGCCAGTATGGTTTGTTGGGTACCATCTGTAGCAAATAACATCCAGCTGTACAG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR TCA 72 bp AAGCTGGCCAGAGCATTAGACATGCTGGTACAGAAATaGGACCCCTGCTGTACAGCTGGATGTTATTTGCTA +
Preference number: 3 (lower is better)
Translates to: KLARALDMLVQK*DPCCTAGCYLL
Trigger: TAGCAAATAACATCCAGCTGTACAGCAGGGGTCTCATTTCTGTACCAGCATGTCTAATGCTCTGGCCAGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR CCA 72 bp CATGCTGGTACAGAAATGAGACCCCTGCTGTACAGCTaGATGTTATTTGCTACAGATGGTACCCAACAAACC +
Preference number: 3 (lower is better)
Translates to: HAGTEMRPLLYS*MLFATDGTQQT
Trigger: GGTTTGTTGGGTACCATCTGTAGCAAATAACATCCAGCTGTACAGCAGGGGTCTCATTTCTGTACCAGCATG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR GCA 72 bp AGAAATGAGACCCCTGCTGTACAGCTGGATGTTATTTaGTACAGATGGTACCCAACAAACCATACTGGCTCT +
Preference number: 3 (lower is better)
Translates to: RNETPAVQLDVI*YRWYPTNHTGS
Trigger: AGAGCCAGTATGGTTTGTTGGGTACCATCTGTAGCAAATAACATCCAGCTGTACAGCAGGGGTCTCATTTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp GCAGGCCCCAGGAGAACTCTCCCCTCCCTACAGATGGTGAACTCCACCCAGGAGGGGGCCGGCCGCAGGTaGTGGACACGCGCACGTCCT +
Preference number: 4 (lower is better)
Translates to: AGPRRTLPSLQMVNSTQEGAGRR*WTRARP
Trigger: AGGACGTGCGCGTGTCCAGCACCTGCGGCCGGCCCC...CTCCTGGGTGGAGTTCACCATCTGTAGGGAGGGGAGAGTTCTCCTGGGGCCTGC
68% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp GGAAGCCACCTGACCCTTGCCAGGGTAGGTCTGTGTGCTCATGCCAGCCTCCCTGGGGCCGGCCGCAGGTaGTGGACACGCGCACGTCCT +
Preference number: 4 (lower is better)
Translates to: GSHLTLARVGLCAHASLPGAGRR*WTRARP
Trigger: AGGACGTGCGCGTGTCCAGCACCTGCGGCCGGCCCC...AGGGAGGCTGGCATGAGCACACAGACCTACCCTGGCAAGGGTCAGGTGGCTTCC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR TCA 90 bp GCAGCTCCAGCAGAGGCAGTGACCACCCGGCTTGACTTCAGGGTCCTTAGGCCCGGATGTCGGTGGCCGTaGCCCAGTCCTGCAGCACCG +
Preference number: 4 (lower is better)
Translates to: AAPAEAVTTRLDFRVLRPGCRWP*PSPAAP
Trigger: CGGTGCTGCAGGACTGGGTCACGGCCACCGACATCC...GGGCCTAAGGACCCTGAAGTCAAGCCGGGTGGTCACTGCCTCTGCTGGAGCTGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp GCAGCTCCAGCAGAGGCAGTGACCACCCGGCTTGACTTCAGGGTCCTTAGGCCCGGGCGCATGTCGGTGTaGGAGTCGGTGCACACGGCC +
Preference number: 4 (lower is better)
Translates to: AAPAEAVTTRLDFRVLRPGRMSV*ESVHTA
Trigger: GGCCGTGTGCACCGACTCGCACACCGACATGCGCCC...GGGCCTAAGGACCCTGAAGTCAAGCCGGGTGGTCACTGCCTCTGCTGGAGCTGC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR TCA 90 bp GGAAGCCACCTGACCCTTGCCAGGGTAGGTCTGTGTGCTCATGCCAGCCTCCCTACGTGTGCAGGCGGCTaGAAGCCACGCGGATGTCGG +
Preference number: 4 (lower is better)
Translates to: GSHLTLARVGLCAHASLPTCAGG*KPRGCR
Trigger: CCGACATCCGCGTGGCTTTCAGCCGCCTGCACACGT...AGGGAGGCTGGCATGAGCACACAGACCTACCCTGGCAAGGGTCAGGTGGCTTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp GGAAGCCACCTGACCCTTGCCAGGGTAGGTCTGTGTGCTCATGCCAGCCTCCCTCGTGGCCGTTGCACTTaGAGCGGCCGCCAACCTGCA +
Preference number: 4 (lower is better)
Translates to: GSHLTLARVGLCAHASLPRGRCT*SGRQPA
Trigger: TGCAGGTTGGCGGCCGCTGCAAGTGCAACGGCCACG...AGGGAGGCTGGCATGAGCACACAGACCTACCCTGGCAAGGGTCAGGTGGCTTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp GAACTCCACCCAGGAGACCAGCCCAGCAGGTGGCAGTGGAGACCAAAGCTGGCTTCAGGCTGCGCCGCCTaGCCGGCGAACATGCTAAGC +
Preference number: 4 (lower is better)
Translates to: ELHPGDQPSRWQWRPKLASGCAA*PANMLS
Trigger: GCTTAGCATGTTCGCCGGCCAGGCGGCGCAGCCTGA...AGCCAGCTTTGGTCTCCACTGCCACCTGCTGGGCTGGTCTCCTGGGTGGAGTTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp GCCTGGGGACCTCCACAAAGAAGGCAGCCAGAAAGGAATAGACCAGACTGCCCAAGGCCACGCACTCGTTaGCCTCGCGGGCCGTGGCGC +
Preference number: 4 (lower is better)
Translates to: AWGPPQRRQPERNRPDCPRPRTR*PRGPWR
Trigger: GCGCCACGGCCCGCGAGGCCAACGAGTGCGTGGCCT...TGGGCAGTCTGGTCTATTCCTTTCTGGCTGCCTTCTTTGTGGAGGTCCCCAGGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp TTGCCCTCAATCTCAAGCTTGGACCAGGGAAGCCACCTGACCCTTGCCAGGGTAAGGCCACGCACTCGTTaGCCTCGCGGGCCGTGGCGC +
Preference number: 4 (lower is better)
Translates to: LPSISSLDQGSHLTLARVRPRTR*PRGPWR
Trigger: GCGCCACGGCCCGCGAGGCCAACGAGTGCGTGGCCT...TACCCTGGCAAGGGTCAGGTGGCTTCCCTGGTCCAAGCTTGAGATTGAGGGCAA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR TCA 90 bp GGAAGCCACCTGACCCTTGCCAGGGTAGGTCTGTGTGCTCATGCCAGCCTCCCTCACATCGGTTGCAGGTaGTGCCCGTCACGCCGTCCT +
Preference number: 4 (lower is better)
Translates to: GSHLTLARVGLCAHASLPHIGCR*CPSRRP
Trigger: AGGACGGCGTGACGGGCATCACCTGCAACCGATGTG...AGGGAGGCTGGCATGAGCACACAGACCTACCCTGGCAAGGGTCAGGTGGCTTCC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp CAGCTAAGCCACCTCTCCAGGCCCTCTCAGATGGCCATGCCTGTCTTCCTGGATCTCCACGCTGCTGGCTaGAGTGGTGGGTGGCGCCAC +
Preference number: 4 (lower is better)
Translates to: QLSHLSRPSQMAMPVFLDLHAAG*SGGWRH
Trigger: GTGGCGCCACCCACCACTGCAGCCAGCAGCGTGGAG...ATCCAGGAAGACAGGCATGGCCATCTGAGAGGGCCTGGAGAGGTGGCTTAGCTG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp GCAGGCCCCAGGAGAACTCTCCCCTCCCTACAGATGGTGAACTCCACCCAGGAGCTGCAGCGCCGAGCATaGAGGTTGCAGTTGCAGGCC +
Preference number: 4 (lower is better)
Translates to: AGPRRTLPSLQMVNSTQELQRRA*RLQLQA
Trigger: GGCCTGCAACTGCAACCTCCATGCTCGGCGCTGCAG...CTCCTGGGTGGAGTTCACCATCTGTAGGGAGGGGAGAGTTCTCCTGGGGCCTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp CAGCTAAGCCACCTCTCCAGGCCCTCTCAGATGGCCATGCCTGTCTTCCTGGATCCGGTTCCTCCACGCTaGTGGCTGCAGTGGTGGGTG +
Preference number: 4 (lower is better)
Translates to: QLSHLSRPSQMAMPVFLDPVPPR*WLQWWV
Trigger: CACCCACCACTGCAGCCAGCAGCGTGGAGGAACCGG...ATCCAGGAAGACAGGCATGGCCATCTGAGAGGGCCTGGAGAGGTGGCTTAGCTG
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp GCAGCTCCAGCAGAGGCAGTGACCACCCGGCTTGACTTCAGGGTCCTTAGGCCCCCATGGACTTGTAGATaGCCATGGACTCTGGCCGCG +
Preference number: 4 (lower is better)
Translates to: AAPAEAVTTRLDFRVLRPPWTCR*PWTLAA
Trigger: CGCGGCCAGAGTCCATGGCCATCTACAAGTCCATGG...GGGCCTAAGGACCCTGAAGTCAAGCCGGGTGGTCACTGCCTCTGCTGGAGCTGC
62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp GCAGGCCCCAGGAGAACTCTCCCCTCCCTACAGATGGTGAACTCCACCCAGGAGCGGCCCGCAGTGTTGTaGCGGCAGTTGAGACAGACT +
Preference number: 4 (lower is better)
Translates to: AGPRRTLPSLQMVNSTQERPAVL*RQLRQT
Trigger: AGTCTGTCTCAACTGCCGCCACAACACTGCGGGCCG...CTCCTGGGTGGAGTTCACCATCTGTAGGGAGGGGAGAGTTCTCCTGGGGCCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp GCAGCTCCAGCAGAGGCAGTGACCACCCGGCTTGACTTCAGGGTCCTTAGGCCCCATGTGTCCCGCCACTaGATCACCAGGCTGCTCTTG +
Preference number: 4 (lower is better)
Translates to: AAPAEAVTTRLDFRVLRPHVSRH*ITRLLL
Trigger: CAAGAGCAGCCTGGTGATCCAGTGGCGGGACACATG...GGGCCTAAGGACCCTGAAGTCAAGCCGGGTGGTCACTGCCTCTGCTGGAGCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR TCA 90 bp CAGCTAAGCCACCTCTCCAGGCCCTCTCAGATGGCCATGCCTGTCTTCCTGGATTGCCGAGCGACAGAGTaGGCGTCACGTTGTGCGGGA +
Preference number: 4 (lower is better)
Translates to: QLSHLSRPSQMAMPVFLDCRATE*ASRCAG
Trigger: TCCCGCACAACGTGACGCTCACTCTGTCGCTCGGCA...ATCCAGGAAGACAGGCATGGCCATCTGAGAGGGCCTGGAGAGGTGGCTTAGCTG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR TCA 90 bp CCTGTTGTCAGAGTCTGGAGTCCTGTGGGAATTCCTAGACAGCGGGTGATGGAGGCCCGTCCAGCGTGCTaGAAGCGATCAGCCCGCCAG +
Preference number: 4 (lower is better)
Translates to: PVVRVWSPVGIPRQRVMEARPAC*KRSARQ
Trigger: CTGGCGGGCTGATCGCTTTCAGCACGCTGGACGGGC...CTCCATCACCCGCTGTCTAGGAATTCCCACAGGACTCCAGACTCTGACAACAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp GAGACTGGACTCCAGGGTTCAAGGGTGGAAGCTGGCCAGAGCATTAGACATGCTGAGCAAGGATCAGGCTaGGCCGCCTGGCCGGCGAAC +
Preference number: 4 (lower is better)
Translates to: ETGLQGSRVEAGQSIRHAEQGSG*AAWPAN
Trigger: GTTCGCCGGCCAGGCGGCGCAGCCTGATCCTTGCTC...AGCATGTCTAATGCTCTGGCCAGCTTCCACCCTTGAACCCTGGAGTCCAGTCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp CCTGTTGTCAGAGTCTGGAGTCCTGTGGGAATTCCTAGACAGCGGGTGATGGAGGAGTTGTCGAAGTCGTaGGCCGAGGGCCGCCCGTCC +
Preference number: 4 (lower is better)
Translates to: PVVRVWSPVGIPRQRVMEELSKS*AEGRPS
Trigger: GGACGGGCGGCCCTCGGCGCACGACTTCGACAACTC...CTCCATCACCCGCTGTCTAGGAATTCCCACAGGACTCCAGACTCTGACAACAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp GCCTGGGGACCTCCACAAAGAAGGCAGCCAGAAAGGAATAGACCAGACTGCCCAGCCGTGACCCAGTCCTaGAGCACCGGCGAGTTGTCG +
Preference number: 4 (lower is better)
Translates to: AWGPPQRRQPERNRPDCPAVTQS*STGELS
Trigger: CGACAACTCGCCGGTGCTGCAGGACTGGGTCACGGC...TGGGCAGTCTGGTCTATTCCTTTCTGGCTGCCTTCTTTGTGGAGGTCCCCAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp TTGCCCTCAATCTCAAGCTTGGACCAGGGAAGCCACCTGACCCTTGCCAGGGTACGTGGCCGTTGCACTTaGAGCGGCCGCCAACCTGCA +
Preference number: 4 (lower is better)
Translates to: LPSISSLDQGSHLTLARVRGRCT*SGRQPA
Trigger: TGCAGGTTGGCGGCCGCTGCAAGTGCAACGGCCACG...TACCCTGGCAAGGGTCAGGTGGCTTCCCTGGTCCAAGCTTGAGATTGAGGGCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp GGGGGAAGTCTAGTTAAGAGACTTCGCTGGATACCAGGTGAGACTGGACTCCAGGCGCCGCGTGGCCGTTaGACTTGCAGCGGCCGCCAA +
Preference number: 4 (lower is better)
Translates to: GGSLVKRLRWIPGETGLQAPRGR*TCSGRQ
Trigger: TTGGCGGCCGCTGCAAGTGCAACGGCCACGCGGCGC...CTGGAGTCCAGTCTCACCTGGTATCCAGCGAAGTCTCTTAACTAGACTTCCCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp GAACTCCACCCAGGAGACCAGCCCAGCAGGTGGCAGTGGAGACCAAAGCTGGCTCGTAGTGGAAGGGCTTaGAACGGTCGCATTCAGGGC +
Preference number: 4 (lower is better)
Translates to: ELHPGDQPSRWQWRPKLARSGRA*NGRIQG
Trigger: GCCCTGAATGCGACCGTTGCAAGCCCTTCCACTACG...AGCCAGCTTTGGTCTCCACTGCCACCTGCTGGGCTGGTCTCCTGGGTGGAGTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp CCTGTTGTCAGAGTCTGGAGTCCTGTGGGAATTCCTAGACAGCGGGTGATGGAGCTTGCGCAGCCGCCGTaGCCATGTGTCCCGCCACTG +
Preference number: 4 (lower is better)
Translates to: PVVRVWSPVGIPRQRVMELAQPP*PCVPPL
Trigger: CAGTGGCGGGACACATGGGCACGGCGGCTGCGCAAG...CTCCATCACCCGCTGTCTAGGAATTCCCACAGGACTCCAGACTCTGACAACAGG
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp GAGACTGGACTCCAGGGTTCAAGGGTGGAAGCTGGCCAGAGCATTAGACATGCTCTTGCGCAGCCGCCGTaGCCATGTGTCCCGCCACTG +
Preference number: 4 (lower is better)
Translates to: ETGLQGSRVEAGQSIRHALAQPP*PCVPPL
Trigger: CAGTGGCGGGACACATGGGCACGGCGGCTGCGCAAG...AGCATGTCTAATGCTCTGGCCAGCTTCCACCCTTGAACCCTGGAGTCCAGTCTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp GCCTGGGGACCTCCACAAAGAAGGCAGCCAGAAAGGAATAGACCAGACTGCCCACCCGTTGCTGGAACTTaGGCAGCCGCCGTGCCCATG +
Preference number: 4 (lower is better)
Translates to: AWGPPQRRQPERNRPDCPPVAGT*AAAVPM
Trigger: CATGGGCACGGCGGCTGCGCAAGTTCCAGCAACGGG...TGGGCAGTCTGGTCTATTCCTTTCTGGCTGCCTTCTTTGTGGAGGTCCCCAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp TTGCCCTCAATCTCAAGCTTGGACCAGGGAAGCCACCTGACCCTTGCCAGGGTACCCGTTGCTGGAACTTaGGCAGCCGCCGTGCCCATG +
Preference number: 4 (lower is better)
Translates to: LPSISSLDQGSHLTLARVPVAGT*AAAVPM
Trigger: CATGGGCACGGCGGCTGCGCAAGTTCCAGCAACGGG...TACCCTGGCAAGGGTCAGGTGGCTTCCCTGGTCCAAGCTTGAGATTGAGGGCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp TTGCCCTCAATCTCAAGCTTGGACCAGGGAAGCCACCTGACCCTTGCCAGGGTATCAGGCTGCGCCGCCTaGCCGGCGAACATGCTAAGC +
Preference number: 4 (lower is better)
Translates to: LPSISSLDQGSHLTLARVSGCAA*PANMLS
Trigger: GCTTAGCATGTTCGCCGGCCAGGCGGCGCAGCCTGA...TACCCTGGCAAGGGTCAGGTGGCTTCCCTGGTCCAAGCTTGAGATTGAGGGCAA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp GCAGCTCCAGCAGAGGCAGTGACCACCCGGCTTGACTTCAGGGTCCTTAGGCCCGCAGCACCCACTGGGTaGCAATCACAGGCTTTGCAA +
Preference number: 4 (lower is better)
Translates to: AAPAEAVTTRLDFRVLRPAAPTG*QSQALQ
Trigger: TTGCAAAGCCTGTGATTGCCACCCAGTGGGTGCTGC...GGGCCTAAGGACCCTGAAGTCAAGCCGGGTGGTCACTGCCTCTGCTGGAGCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR CAA 72 bp CATTCCCCGCCACTCCCGATGCCTCCTCAGGAGGTGTaGCTGGGTCTGTCCCAGACCATACTCCAGGCTCAT +
Preference number: 4 (lower is better)
Translates to: HSPPLPMPPQEV*LGLSQTILQAH
Trigger: ATGAGCCTGGAGTATGGTCTGGGACAGACCCAGCAACACCTCCTGAGGAGGCATCGGGAGTGGCGGGGAATG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR TCA 90 bp CAGCTAAGCCACCTCTCCAGGCCCTCTCAGATGGCCATGCCTGTCTTCCTGGATGAAGAGTTGCAGAGGTaGCAGGAGCGCAGCCGCTCT +
Preference number: 4 (lower is better)
Translates to: QLSHLSRPSQMAMPVFLDEELQR*QERSRS
Trigger: AGAGCGGCTGCGCTCCTGTCACCTCTGCAACTCTTC...ATCCAGGAAGACAGGCATGGCCATCTGAGAGGGCCTGGAGAGGTGGCTTAGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR TCA 90 bp GGTTTCTTAACCAAGGAGTCTATGTCCCTTTTCTGGGGAGCCAGCAGTGAGGGCGGATGTCGGTGGCCGTaGCCCAGTCCTGCAGCACCG +
Preference number: 4 (lower is better)
Translates to: GFLTKESMSLFWGASSEGGCRWP*PSPAAP
Trigger: CGGTGCTGCAGGACTGGGTCACGGCCACCGACATCC...GCCCTCACTGCTGGCTCCCCAGAAAAGGGACATAGACTCCTTGGTTAAGAAACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR TCA 90 bp GCAGCTCCAGCAGAGGCAGTGACCACCCGGCTTGACTTCAGGGTCCTTAGGCCCCATTGGCCAGTGGTTTaGTTGCAGGTCTTGCCAGCA +
Preference number: 4 (lower is better)
Translates to: AAPAEAVTTRLDFRVLRPHWPVV*LQVLPA
Trigger: TGCTGGCAAGACCTGCAATCAAACCACTGGCCAATG...GGGCCTAAGGACCCTGAAGTCAAGCCGGGTGGTCACTGCCTCTGCTGGAGCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp GCAGCTCCAGCAGAGGCAGTGACCACCCGGCTTGACTTCAGGGTCCTTAGGCCCGTGCACACGGCCTCCTaGTCGTTCTGTTTGGTGATA +
Preference number: 4 (lower is better)
Translates to: AAPAEAVTTRLDFRVLRPVHTAS*SFCLVI
Trigger: TATCACCAAACAGAACGAGCAGGAGGCCGTGTGCAC...GGGCCTAAGGACCCTGAAGTCAAGCCGGGTGGTCACTGCCTCTGCTGGAGCTGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp CCTGTTGTCAGAGTCTGGAGTCCTGTGGGAATTCCTAGACAGCGGGTGATGGAGCGGTGTGCGAGTCGGTaGACACGGCCTCCTGCTCGT +
Preference number: 4 (lower is better)
Translates to: PVVRVWSPVGIPRQRVMERCASR*TRPPAR
Trigger: ACGAGCAGGAGGCCGTGTGCACCGACTCGCACACCG...CTCCATCACCCGCTGTCTAGGAATTCCCACAGGACTCCAGACTCTGACAACAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp GGTTTCTTAACCAAGGAGTCTATGTCCCTTTTCTGGGGAGCCAGCAGTGAGGGCGGGCGCATGTCGGTGTaGGAGTCGGTGCACACGGCC +
Preference number: 4 (lower is better)
Translates to: GFLTKESMSLFWGASSEGGRMSV*ESVHTA
Trigger: GGCCGTGTGCACCGACTCGCACACCGACATGCGCCC...GCCCTCACTGCTGGCTCCCCAGAAAAGGGACATAGACTCCTTGGTTAAGAAACC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp GAGACTGGACTCCAGGGTTCAAGGGTGGAAGCTGGCCAGAGCATTAGACATGCTGCCGTGACCCAGTCCTaGAGCACCGGCGAGTTGTCG +
Preference number: 4 (lower is better)
Translates to: ETGLQGSRVEAGQSIRHAAVTQS*STGELS
Trigger: CGACAACTCGCCGGTGCTGCAGGACTGGGTCACGGC...AGCATGTCTAATGCTCTGGCCAGCTTCCACCCTTGAACCCTGGAGTCCAGTCTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp GCCTGGGGACCTCCACAAAGAAGGCAGCCAGAAAGGAATAGACCAGACTGCCCACCGTCACGCCGTCCTTaGAGGGACATTGGCCAGTGG +
Preference number: 4 (lower is better)
Translates to: AWGPPQRRQPERNRPDCPPSRRP*RDIGQW
Trigger: CCACTGGCCAATGTCCCTGCAAGGACGGCGTGACGG...TGGGCAGTCTGGTCTATTCCTTTCTGGCTGCCTTCTTTGTGGAGGTCCCCAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp GCAGGCCCCAGGAGAACTCTCCCCTCCCTACAGATGGTGAACTCCACCCAGGAGCTTCCACCAGTCCCCTaGTTTGTCGGCCTTCAGGAT +
Preference number: 4 (lower is better)
Translates to: AGPRRTLPSLQMVNSTQELPPVP*FVGLQD
Trigger: ATCCTGAAGGCCGACAAAGCAGGGGACTGGTGGAAG...CTCCTGGGTGGAGTTCACCATCTGTAGGGAGGGGAGAGTTCTCCTGGGGCCTGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp GGAAGCCACCTGACCCTTGCCAGGGTAGGTCTGTGTGCTCATGCCAGCCTCCCTACTGGATCACCAGGCTaGTCTTGTCTGCCACGATGC +
Preference number: 4 (lower is better)
Translates to: GSHLTLARVGLCAHASLPTGSPG*SCLPRC
Trigger: GCATCGTGGCAGACAAGAGCAGCCTGGTGATCCAGT...AGGGAGGCTGGCATGAGCACACAGACCTACCCTGGCAAGGGTCAGGTGGCTTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp CAGCTAAGCCACCTCTCCAGGCCCTCTCAGATGGCCATGCCTGTCTTCCTGGATACTTGTAGATGGCCATaGACTCTGGCCGCGGCGAGC +
Preference number: 4 (lower is better)
Translates to: QLSHLSRPSQMAMPVFLDTCRWP*TLAAAS
Trigger: GCTCGCCGCGGCCAGAGTCCATGGCCATCTACAAGT...ATCCAGGAAGACAGGCATGGCCATCTGAGAGGGCCTGGAGAGGTGGCTTAGCTG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp GAACTCCACCCAGGAGACCAGCCCAGCAGGTGGCAGTGGAGACCAAAGCTGGCTTGCGCCCGTAGTCCATaGACTTGTAGATGGCCATGG +
Preference number: 4 (lower is better)
Translates to: ELHPGDQPSRWQWRPKLACARSP*TCRWPW
Trigger: CCATGGCCATCTACAAGTCCATGGACTACGGGCGCA...AGCCAGCTTTGGTCTCCACTGCCACCTGCTGGGCTGGTCTCCTGGGTGGAGTTC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp GGGGGAAGTCTAGTTAAGAGACTTCGCTGGATACCAGGTGAGACTGGACTCCAGACGCAACGCGCCGCGTaGCCGTTGCACTTGCAGCGG +
Preference number: 4 (lower is better)
Translates to: GGSLVKRLRWIPGETGLQTQRAA*PLHLQR
Trigger: CCGCTGCAAGTGCAACGGCCACGCGGCGCGTTGCGT...CTGGAGTCCAGTCTCACCTGGTATCCAGCGAAGTCTCTTAACTAGACTTCCCCC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp AAAGGAATAGACCAGACTGCCCAGGCTAGACCAAGACAGCTGGGAGCTAGAGTGACGCAACGCGCCGCGTaGCCGTTGCACTTGCAGCGG +
Preference number: 4 (lower is better)
Translates to: KGIDQTAQARPRQLGARVTQRAA*PLHLQR
Trigger: CCGCTGCAAGTGCAACGGCCACGCGGCGCGTTGCGT...CACTCTAGCTCCCAGCTGTCTTGGTCTAGCCTGGGCAGTCTGGTCTATTCCTTT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp CCTGTTGTCAGAGTCTGGAGTCCTGTGGGAATTCCTAGACAGCGGGTGATGGAGGTTCCTCCACGCTGCTaGCTGCAGTGGTGGGTGGCG +
Preference number: 4 (lower is better)
Translates to: PVVRVWSPVGIPRQRVMEVPPRC*LQWWVA
Trigger: CGCCACCCACCACTGCAGCCAGCAGCGTGGAGGAAC...CTCCATCACCCGCTGTCTAGGAATTCCCACAGGACTCCAGACTCTGACAACAGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp AAAGGAATAGACCAGACTGCCCAGGCTAGACCAAGACAGCTGGGAGCTAGAGTGCGGTGTGCGAGTCGGTaGACACGGCCTCCTGCTCGT +
Preference number: 4 (lower is better)
Translates to: KGIDQTAQARPRQLGARVRCASR*TRPPAR
Trigger: ACGAGCAGGAGGCCGTGTGCACCGACTCGCACACCG...CACTCTAGCTCCCAGCTGTCTTGGTCTAGCCTGGGCAGTCTGGTCTATTCCTTT
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp CCTGTTGTCAGAGTCTGGAGTCCTGTGGGAATTCCTAGACAGCGGGTGATGGAGTCGTCGCCGAACGTGTaGAGGCGGCTGAAAGCCACG +
Preference number: 4 (lower is better)
Translates to: PVVRVWSPVGIPRQRVMESSPNV*RRLKAT
Trigger: CGTGGCTTTCAGCCGCCTGCACACGTTCGGCGACGA...CTCCATCACCCGCTGTCTAGGAATTCCCACAGGACTCCAGACTCTGACAACAGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp TTGCCCTCAATCTCAAGCTTGGACCAGGGAAGCCACCTGACCCTTGCCAGGGTAGGGCCGGCCGTGTTGTaGCTACAGTCACACACCAGA +
Preference number: 4 (lower is better)
Translates to: LPSISSLDQGSHLTLARVGPAVL*LQSHTR
Trigger: TCTGGTGTGTGACTGTAGGCACAACACGGCCGGCCC...TACCCTGGCAAGGGTCAGGTGGCTTCCCTGGTCCAAGCTTGAGATTGAGGGCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp GGAAGCCACCTGACCCTTGCCAGGGTAGGTCTGTGTGCTCATGCCAGCCTCCCTAGACTCCCCCGCTCTTaGGCCCTGATAGCTTATAGA +
Preference number: 4 (lower is better)
Translates to: GSHLTLARVGLCAHASLPRLPRS*ALIAYR
Trigger: TCTATAAGCTATCAGGGCGCAAGAGCGGGGGAGTCT...AGGGAGGCTGGCATGAGCACACAGACCTACCCTGGCAAGGGTCAGGTGGCTTCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp GGTTTCTTAACCAAGGAGTCTATGTCCCTTTTCTGGGGAGCCAGCAGTGAGGGCCCGGTTCCTCCACGCTaGTGGCTGCAGTGGTGGGTG +
Preference number: 4 (lower is better)
Translates to: GFLTKESMSLFWGASSEGPVPPR*WLQWWV
Trigger: CACCCACCACTGCAGCCAGCAGCGTGGAGGAACCGG...GCCCTCACTGCTGGCTCCCCAGAAAAGGGACATAGACTCCTTGGTTAAGAAACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp GGGGGAAGTCTAGTTAAGAGACTTCGCTGGATACCAGGTGAGACTGGACTCCAGGTTCCTCCACGCTGCTaGCTGCAGTGGTGGGTGGCG +
Preference number: 4 (lower is better)
Translates to: GGSLVKRLRWIPGETGLQVPPRC*LQWWVA
Trigger: CGCCACCCACCACTGCAGCCAGCAGCGTGGAGGAAC...CTGGAGTCCAGTCTCACCTGGTATCCAGCGAAGTCTCTTAACTAGACTTCCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp TTGCCCTCAATCTCAAGCTTGGACCAGGGAAGCCACCTGACCCTTGCCAGGGTAGCCACGATGCCACTCTaGTCAGGTGAGTCCTCGGCA +
Preference number: 4 (lower is better)
Translates to: LPSISSLDQGSHLTLARVATMPL*SGESSA
Trigger: TGCCGAGGACTCACCTGACCAGAGTGGCATCGTGGC...TACCCTGGCAAGGGTCAGGTGGCTTCCCTGGTCCAAGCTTGAGATTGAGGGCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp CAGCTAAGCCACCTCTCCAGGCCCTCTCAGATGGCCATGCCTGTCTTCCTGGATTTCTTCTCCCGTTGCTaGAACTTGCGCAGCCGCCGT +
Preference number: 4 (lower is better)
Translates to: QLSHLSRPSQMAMPVFLDFFSRC*NLRSRR
Trigger: ACGGCGGCTGCGCAAGTTCCAGCAACGGGAGAAGAA...ATCCAGGAAGACAGGCATGGCCATCTGAGAGGGCCTGGAGAGGTGGCTTAGCTG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR TCA 90 bp GGGGGAAGTCTAGTTAAGAGACTTCGCTGGATACCAGGTGAGACTGGACTCCAGTGCCGAAGGCCGCGTTaGCAAAGTCCGGGATGCAGC +
Preference number: 4 (lower is better)
Translates to: GGSLVKRLRWIPGETGLQCRRPR*QSPGCS
Trigger: GCTGCATCCCGGACTTTGTCAACGCGGCCTTCGGCA...CTGGAGTCCAGTCTCACCTGGTATCCAGCGAAGTCTCTTAACTAGACTTCCCCC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR TCA 90 bp GAGACTGGACTCCAGGGTTCAAGGGTGGAAGCTGGCCAGAGCATTAGACATGCTGAAGAGTTGCAGAGGTaGCAGGAGCGCAGCCGCTCT +
Preference number: 4 (lower is better)
Translates to: ETGLQGSRVEAGQSIRHAEELQR*QERSRS
Trigger: AGAGCGGCTGCGCTCCTGTCACCTCTGCAACTCTTC...AGCATGTCTAATGCTCTGGCCAGCTTCCACCCTTGAACCCTGGAGTCCAGTCTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR TCA 90 bp GCAGGCCCCAGGAGAACTCTCCCCTCCCTACAGATGGTGAACTCCACCCAGGAGTATAGAGCTCCATGTTaGATCTGCAGCGCCGAGCAT +
Preference number: 4 (lower is better)
Translates to: AGPRRTLPSLQMVNSTQEYRAPC*ICSAEH
Trigger: ATGCTCGGCGCTGCAGATTCAACATGGAGCTCTATA...CTCCTGGGTGGAGTTCACCATCTGTAGGGAGGGGAGAGTTCTCCTGGGGCCTGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp CAGCTAAGCCACCTCTCCAGGCCCTCTCAGATGGCCATGCCTGTCTTCCTGGATCAGCACGTCAGGTTGTaGGGGTTATTGAGGTCGGTG +
Preference number: 4 (lower is better)
Translates to: QLSHLSRPSQMAMPVFLDQHVRL*GLLRSV
Trigger: CACCGACCTCAATAACCCGCACAACCTGACGTGCTG...ATCCAGGAAGACAGGCATGGCCATCTGAGAGGGCCTGGAGAGGTGGCTTAGCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp GGTTTCTTAACCAAGGAGTCTATGTCCCTTTTCTGGGGAGCCAGCAGTGAGGGCGGAAGGGCACCCACGTaGGCCCGTAGTCCATGGACT +
Preference number: 4 (lower is better)
Translates to: GFLTKESMSLFWGASSEGGRAPT*ARSPWT
Trigger: AGTCCATGGACTACGGGCGCACGTGGGTGCCCTTCC...GCCCTCACTGCTGGCTCCCCAGAAAAGGGACATAGACTCCTTGGTTAAGAAACC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp CCTGTTGTCAGAGTCTGGAGTCCTGTGGGAATTCCTAGACAGCGGGTGATGGAGGATGGCCATGGACTCTaGCCGCGGCGAGCAGAATTG +
Preference number: 4 (lower is better)
Translates to: PVVRVWSPVGIPRQRVMEDGHGL*PRRAEL
Trigger: CAATTCTGCTCGCCGCGGCCAGAGTCCATGGCCATC...CTCCATCACCCGCTGTCTAGGAATTCCCACAGGACTCCAGACTCTGACAACAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp GAACTCCACCCAGGAGACCAGCCCAGCAGGTGGCAGTGGAGACCAAAGCTGGCTTTTTGCGGCACTGCGTaGAATAGAACTGGAAGGGCA +
Preference number: 4 (lower is better)
Translates to: ELHPGDQPSRWQWRPKLAFCGTA*NRTGRA
Trigger: TGCCCTTCCAGTTCTATTCCACGCAGTGCCGCAAAA...AGCCAGCTTTGGTCTCCACTGCCACCTGCTGGGCTGGTCTCCTGGGTGGAGTTC
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp AAAGGAATAGACCAGACTGCCCAGGCTAGACCAAGACAGCTGGGAGCTAGAGTGCTGCAGCGCCGAGCATaGAGGTTGCAGTTGCAGGCC +
Preference number: 4 (lower is better)
Translates to: KGIDQTAQARPRQLGARVLQRRA*RLQLQA
Trigger: GGCCTGCAACTGCAACCTCCATGCTCGGCGCTGCAG...CACTCTAGCTCCCAGCTGTCTTGGTCTAGCCTGGGCAGTCTGGTCTATTCCTTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp GCCTGGGGACCTCCACAAAGAAGGCAGCCAGAAAGGAATAGACCAGACTGCCCAGGCTGCAGTGGTGGGTaGCGCCACAGGAATCTTGAT +
Preference number: 4 (lower is better)
Translates to: AWGPPQRRQPERNRPDCPGCSGG*RHRNLD
Trigger: ATCAAGATTCCTGTGGCGCCACCCACCACTGCAGCC...TGGGCAGTCTGGTCTATTCCTTTCTGGCTGCCTTCTTTGTGGAGGTCCCCAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp AGACATGCTGGTACAGAAATGAGACCCCTGCTGTACAGCTGGATGTTATTTGCTGCGCCGCGTGGCCGTTaGACTTGCAGCGGCCGCCAA +
Preference number: 4 (lower is better)
Translates to: RHAGTEMRPLLYSWMLFAAPRGR*TCSGRQ
Trigger: TTGGCGGCCGCTGCAAGTGCAACGGCCACGCGGCGC...AGCAAATAACATCCAGCTGTACAGCAGGGGTCTCATTTCTGTACCAGCATGTCT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp AAAGGAATAGACCAGACTGCCCAGGCTAGACCAAGACAGCTGGGAGCTAGAGTGGGGCCGGCCGTGTTGTaGCTACAGTCACACACCAGA +
Preference number: 4 (lower is better)
Translates to: KGIDQTAQARPRQLGARVGPAVL*LQSHTR
Trigger: TCTGGTGTGTGACTGTAGGCACAACACGGCCGGCCC...CACTCTAGCTCCCAGCTGTCTTGGTCTAGCCTGGGCAGTCTGGTCTATTCCTTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp CAGCTAAGCCACCTCTCCAGGCCCTCTCAGATGGCCATGCCTGTCTTCCTGGATAGACTCCCCCGCTCTTaGGCCCTGATAGCTTATAGA +
Preference number: 4 (lower is better)
Translates to: QLSHLSRPSQMAMPVFLDRLPRS*ALIAYR
Trigger: TCTATAAGCTATCAGGGCGCAAGAGCGGGGGAGTCT...ATCCAGGAAGACAGGCATGGCCATCTGAGAGGGCCTGGAGAGGTGGCTTAGCTG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp GAACTCCACCCAGGAGACCAGCCCAGCAGGTGGCAGTGGAGACCAAAGCTGGCTTGCCTTTGGAGGCCTTaGAATAGGAGTCACAGTCTT +
Preference number: 4 (lower is better)
Translates to: ELHPGDQPSRWQWRPKLACLWRP*NRSHSL
Trigger: AAGACTGTGACTCCTATTGCAAGGCCTCCAAAGGCA...AGCCAGCTTTGGTCTCCACTGCCACCTGCTGGGCTGGTCTCCTGGGTGGAGTTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp GGTTTCTTAACCAAGGAGTCTATGTCCCTTTTCTGGGGAGCCAGCAGTGAGGGCCCCTTCTTCTCCCGTTaGTGGAACTTGCGCAGCCGC +
Preference number: 4 (lower is better)
Translates to: GFLTKESMSLFWGASSEGPFFSR*WNLRSR
Trigger: GCGGCTGCGCAAGTTCCAGCAACGGGAGAAGAAGGG...GCCCTCACTGCTGGCTCCCCAGAAAAGGGACATAGACTCCTTGGTTAAGAAACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp CAGCTAAGCCACCTCTCCAGGCCCTCTCAGATGGCCATGCCTGTCTTCCTGGATAGGCCTTCTTGCACTTaGCCTTCTTCTCCCGTTGCT +
Preference number: 4 (lower is better)
Translates to: QLSHLSRPSQMAMPVFLDRPSCT*PSSPVA
Trigger: AGCAACGGGAGAAGAAGGGCAAGTGCAAGAAGGCCT...ATCCAGGAAGACAGGCATGGCCATCTGAGAGGGCCTGGAGAGGTGGCTTAGCTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp GGTTTCTTAACCAAGGAGTCTATGTCCCTTTTCTGGGGAGCCAGCAGTGAGGGCGATGGCCATGGACTCTaGCCGCGGCGAGCAGAATTG +
Preference number: 4 (lower is better)
Translates to: GFLTKESMSLFWGASSEGDGHGL*PRRAEL
Trigger: CAATTCTGCTCGCCGCGGCCAGAGTCCATGGCCATC...GCCCTCACTGCTGGCTCCCCAGAAAAGGGACATAGACTCCTTGGTTAAGAAACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp GGTTTCTTAACCAAGGAGTCTATGTCCCTTTTCTGGGGAGCCAGCAGTGAGGGCCGGCCCGCAGTGTTGTaGCGGCAGTTGAGACAGACT +
Preference number: 4 (lower is better)
Translates to: GFLTKESMSLFWGASSEGRPAVL*RQLRQT
Trigger: AGTCTGTCTCAACTGCCGCCACAACACTGCGGGCCG...GCCCTCACTGCTGGCTCCCCAGAAAAGGGACATAGACTCCTTGGTTAAGAAACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp GGTTTCTTAACCAAGGAGTCTATGTCCCTTTTCTGGGGAGCCAGCAGTGAGGGCGCCACGATGCCACTCTaGTCAGGTGAGTCCTCGGCA +
Preference number: 4 (lower is better)
Translates to: GFLTKESMSLFWGASSEGATMPL*SGESSA
Trigger: TGCCGAGGACTCACCTGACCAGAGTGGCATCGTGGC...GCCCTCACTGCTGGCTCCCCAGAAAAGGGACATAGACTCCTTGGTTAAGAAACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp CCTGTTGTCAGAGTCTGGAGTCCTGTGGGAATTCCTAGACAGCGGGTGATGGAGCATGTGTCCCGCCACTaGATCACCAGGCTGCTCTTG +
Preference number: 4 (lower is better)
Translates to: PVVRVWSPVGIPRQRVMEHVSRH*ITRLLL
Trigger: CAAGAGCAGCCTGGTGATCCAGTGGCGGGACACATG...CTCCATCACCCGCTGTCTAGGAATTCCCACAGGACTCCAGACTCTGACAACAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR TCA 90 bp GGTTTCTTAACCAAGGAGTCTATGTCCCTTTTCTGGGGAGCCAGCAGTGAGGGCGCAGGCGATGTCTCGTaGGCGGATCCACAAACTCTG +
Preference number: 4 (lower is better)
Translates to: GFLTKESMSLFWGASSEGAGDVS*ADPQTL
Trigger: CAGAGTTTGTGGATCCGCTCACGAGACATCGCCTGC...GCCCTCACTGCTGGCTCCCCAGAAAAGGGACATAGACTCCTTGGTTAAGAAACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp GCTGTTTCCAAGTTTCCAGCAAGGAAACTCTCTGGGAGGTTTTGGTTTGCAATGGAGCAAGGATCAGGCTaGGCCGCCTGGCCGGCGAAC +
Preference number: 4 (lower is better)
Translates to: AVSKFPARKLSGRFWFAMEQGSG*AAWPAN
Trigger: GTTCGCCGGCCAGGCGGCGCAGCCTGATCCTTGCTC...CATTGCAAACCAAAACCTCCCAGAGAGTTTCCTTGCTGGAAACTTGGAAACAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp CCTGTTGTCAGAGTCTGGAGTCCTGTGGGAATTCCTAGACAGCGGGTGATGGAGCAGCACGTCAGGTTGTaGGGGTTATTGAGGTCGGTG +
Preference number: 4 (lower is better)
Translates to: PVVRVWSPVGIPRQRVMEQHVRL*GLLRSV
Trigger: CACCGACCTCAATAACCCGCACAACCTGACGTGCTG...CTCCATCACCCGCTGTCTAGGAATTCCCACAGGACTCCAGACTCTGACAACAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp GGTTTCTTAACCAAGGAGTCTATGTCCCTTTTCTGGGGAGCCAGCAGTGAGGGCGTGATAGGCGCGCGGTaGGGCCGGTTGTACATTTTG +
Preference number: 4 (lower is better)
Translates to: GFLTKESMSLFWGASSEGVIGAR*GRLYIL
Trigger: CAAAATGTACAACCGGCCGCACCGCGCGCCTATCAC...GCCCTCACTGCTGGCTCCCCAGAAAAGGGACATAGACTCCTTGGTTAAGAAACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp GCTGTTTCCAAGTTTCCAGCAAGGAAACTCTCTGGGAGGTTTTGGTTTGCAATGGAGTTGTCGAAGTCGTaGGCCGAGGGCCGCCCGTCC +
Preference number: 4 (lower is better)
Translates to: AVSKFPARKLSGRFWFAMELSKS*AEGRPS
Trigger: GGACGGGCGGCCCTCGGCGCACGACTTCGACAACTC...CATTGCAAACCAAAACCTCCCAGAGAGTTTCCTTGCTGGAAACTTGGAAACAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp GAACTCCACCCAGGAGACCAGCCCAGCAGGTGGCAGTGGAGACCAAAGCTGGCTTGTTCATCTTCAGCTTaGCTTTGGAGGCCTTGCAAT +
Preference number: 4 (lower is better)
Translates to: ELHPGDQPSRWQWRPKLACSSSA*LWRPCN
Trigger: ATTGCAAGGCCTCCAAAGGCAAGCTGAAGATGAACA...AGCCAGCTTTGGTCTCCACTGCCACCTGCTGGGCTGGTCTCCTGGGTGGAGTTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp GAGACTGGACTCCAGGGTTCAAGGGTGGAAGCTGGCCAGAGCATTAGACATGCTTTGCAAGCCTTCCGGTaGGTGATAGGCTTGCCCATG +
Preference number: 4 (lower is better)
Translates to: ETGLQGSRVEAGQSIRHALQAFR*VIGLPM
Trigger: CATGGGCAAGCCTATCACCCACCGGAAGGCTTGCAA...AGCATGTCTAATGCTCTGGCCAGCTTCCACCCTTGAACCCTGGAGTCCAGTCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp GAGACTGGACTCCAGGGTTCAAGGGTGGAAGCTGGCCAGAGCATTAGACATGCTGCAGCACCCACTGGGTaGCAATCACAGGCTTTGCAA +
Preference number: 4 (lower is better)
Translates to: ETGLQGSRVEAGQSIRHAAAPTG*QSQALQ
Trigger: TTGCAAAGCCTGTGATTGCCACCCAGTGGGTGCTGC...AGCATGTCTAATGCTCTGGCCAGCTTCCACCCTTGAACCCTGGAGTCCAGTCTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp AAAGGAATAGACCAGACTGCCCAGGCTAGACCAAGACAGCTGGGAGCTAGAGTGGGCTGCAGTGGTGGGTaGCGCCACAGGAATCTTGAT +
Preference number: 4 (lower is better)
Translates to: KGIDQTAQARPRQLGARVGCSGG*RHRNLD
Trigger: ATCAAGATTCCTGTGGCGCCACCCACCACTGCAGCC...CACTCTAGCTCCCAGCTGTCTTGGTCTAGCCTGGGCAGTCTGGTCTATTCCTTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR TCA 90 bp AGACATGCTGGTACAGAAATGAGACCCCTGCTGTACAGCTGGATGTTATTTGCTACGTGTGCAGGCGGCTaGAAGCCACGCGGATGTCGG +
Preference number: 4 (lower is better)
Translates to: RHAGTEMRPLLYSWMLFATCAGG*KPRGCR
Trigger: CCGACATCCGCGTGGCTTTCAGCCGCCTGCACACGT...AGCAAATAACATCCAGCTGTACAGCAGGGGTCTCATTTCTGTACCAGCATGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp CTGTACAGCTGGATGTTATTTGCTACAGATGGTACCCAACAAACCATACTGGCTCTCCACGCTGCTGGCTaGAGTGGTGGGTGGCGCCAC +
Preference number: 4 (lower is better)
Translates to: LYSWMLFATDGTQQTILALHAAG*SGGWRH
Trigger: GTGGCGCCACCCACCACTGCAGCCAGCAGCGTGGAG...AGCCAGTATGGTTTGTTGGGTACCATCTGTAGCAAATAACATCCAGCTGTACAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp GGTTTCTTAACCAAGGAGTCTATGTCCCTTTTCTGGGGAGCCAGCAGTGAGGGCCTTCCACCAGTCCCCTaGTTTGTCGGCCTTCAGGAT +
Preference number: 4 (lower is better)
Translates to: GFLTKESMSLFWGASSEGLPPVP*FVGLQD
Trigger: ATCCTGAAGGCCGACAAAGCAGGGGACTGGTGGAAG...GCCCTCACTGCTGGCTCCCCAGAAAAGGGACATAGACTCCTTGGTTAAGAAACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp CAGCTAAGCCACCTCTCCAGGCCCTCTCAGATGGCCATGCCTGTCTTCCTGGATATACGACTTGTGCCCTaGTTGTACACGGAGATGATG +
Preference number: 4 (lower is better)
Translates to: QLSHLSRPSQMAMPVFLDIRLVP*LYTEMM
Trigger: CATCATCTCCGTGTACAAGCAGGGCACAAGTCGTAT...ATCCAGGAAGACAGGCATGGCCATCTGAGAGGGCCTGGAGAGGTGGCTTAGCTG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp GGTTTCTTAACCAAGGAGTCTATGTCCCTTTTCTGGGGAGCCAGCAGTGAGGGCACTGGATCACCAGGCTaGTCTTGTCTGCCACGATGC +
Preference number: 4 (lower is better)
Translates to: GFLTKESMSLFWGASSEGTGSPG*SCLPRC
Trigger: GCATCGTGGCAGACAAGAGCAGCCTGGTGATCCAGT...GCCCTCACTGCTGGCTCCCCAGAAAAGGGACATAGACTCCTTGGTTAAGAAACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp GGGGGAAGTCTAGTTAAGAGACTTCGCTGGATACCAGGTGAGACTGGACTCCAGTTGCAAGCCTTCCGGTaGGTGATAGGCTTGCCCATG +
Preference number: 4 (lower is better)
Translates to: GGSLVKRLRWIPGETGLQLQAFR*VIGLPM
Trigger: CATGGGCAAGCCTATCACCCACCGGAAGGCTTGCAA...CTGGAGTCCAGTCTCACCTGGTATCCAGCGAAGTCTCTTAACTAGACTTCCCCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp TTGCCCTCAATCTCAAGCTTGGACCAGGGAAGCCACCTGACCCTTGCCAGGGTAAGGGACATTGGCCAGTaGTTTGATTGCAGGTCTTGC +
Preference number: 4 (lower is better)
Translates to: LPSISSLDQGSHLTLARVRDIGQ*FDCRSC
Trigger: GCAAGACCTGCAATCAAACCACTGGCCAATGTCCCT...TACCCTGGCAAGGGTCAGGTGGCTTCCCTGGTCCAAGCTTGAGATTGAGGGCAA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp GCCTGGGGACCTCCACAAAGAAGGCAGCCAGAAAGGAATAGACCAGACTGCCCAAGGGACATTGGCCAGTaGTTTGATTGCAGGTCTTGC +
Preference number: 4 (lower is better)
Translates to: AWGPPQRRQPERNRPDCPRDIGQ*FDCRSC
Trigger: GCAAGACCTGCAATCAAACCACTGGCCAATGTCCCT...TGGGCAGTCTGGTCTATTCCTTTCTGGCTGCCTTCTTTGTGGAGGTCCCCAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp GCTGTTTCCAAGTTTCCAGCAAGGAAACTCTCTGGGAGGTTTTGGTTTGCAATGCGCTGCTGGCTGCAGTaGTGGGTGGCGCCACAGGAA +
Preference number: 4 (lower is better)
Translates to: AVSKFPARKLSGRFWFAMRCWLQ*WVAPQE
Trigger: TTCCTGTGGCGCCACCCACCACTGCAGCCAGCAGCG...CATTGCAAACCAAAACCTCCCAGAGAGTTTCCTTGCTGGAAACTTGGAAACAGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp AGACATGCTGGTACAGAAATGAGACCCCTGCTGTACAGCTGGATGTTATTTGCTCGCTGCTGGCTGCAGTaGTGGGTGGCGCCACAGGAA +
Preference number: 4 (lower is better)
Translates to: RHAGTEMRPLLYSWMLFARCWLQ*WVAPQE
Trigger: TTCCTGTGGCGCCACCCACCACTGCAGCCAGCAGCG...AGCAAATAACATCCAGCTGTACAGCAGGGGTCTCATTTCTGTACCAGCATGTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp GGGGGAAGTCTAGTTAAGAGACTTCGCTGGATACCAGGTGAGACTGGACTCCAGAGGCCTTCTTGCACTTaGCCTTCTTCTCCCGTTGCT +
Preference number: 4 (lower is better)
Translates to: GGSLVKRLRWIPGETGLQRPSCT*PSSPVA
Trigger: AGCAACGGGAGAAGAAGGGCAAGTGCAAGAAGGCCT...CTGGAGTCCAGTCTCACCTGGTATCCAGCGAAGTCTCTTAACTAGACTTCCCCC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
3UTR CAA 72 bp CCCAGGTCAGTCCTGAAGGGTCTCCTCATTTCAGTCTaGTTCCAGCTCAGGGGCAATTCTAAGACAGCCTGT +
Preference number: 4 (lower is better)
Translates to: PRSVLKGLLISV*FQLRGNSKTAC
Trigger: ACAGGCTGTCTTAGAATTGCCCCTGAGCTGGAACAAGACTGAAATGAGGAGACCCTTCAGGACTGACCTGGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR TCA 90 bp AAAAGGGCTGTTTCCAAGTTTCCAGCAAGGAAACTCTCTGGGAGGTTTTGGTTTTGCCGAAGGCCGCGTTaGCAAAGTCCGGGATGCAGC +
Preference number: 4 (lower is better)
Translates to: KRAVSKFPARKLSGRFWFCRRPR*QSPGCS
Trigger: GCTGCATCCCGGACTTTGTCAACGCGGCCTTCGGCA...AAACCAAAACCTCCCAGAGAGTTTCCTTGCTGGAAACTTGGAAACAGCCCTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR TCA 90 bp AAAAGGGCTGTTTCCAAGTTTCCAGCAAGGAAACTCTCTGGGAGGTTTTGGTTTCACATCGGTTGCAGGTaGTGCCCGTCACGCCGTCCT +
Preference number: 4 (lower is better)
Translates to: KRAVSKFPARKLSGRFWFHIGCR*CPSRRP
Trigger: AGGACGGCGTGACGGGCATCACCTGCAACCGATGTG...AAACCAAAACCTCCCAGAGAGTTTCCTTGCTGGAAACTTGGAAACAGCCCTTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp AGACATGCTGGTACAGAAATGAGACCCCTGCTGTACAGCTGGATGTTATTTGCTAGGAAGGCGGGCGGGTaGGCTTTCTTGGGATCCGAA +
Preference number: 4 (lower is better)
Translates to: RHAGTEMRPLLYSWMLFARKAGG*AFLGSE
Trigger: TTCGGATCCCAAGAAAGCGCACCCGCCCGCCTTCCT...AGCAAATAACATCCAGCTGTACAGCAGGGGTCTCATTTCTGTACCAGCATGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp CTGTACAGCTGGATGTTATTTGCTACAGATGGTACCCAACAAACCATACTGGCTGGAAGGGCACCCACGTaGGCCCGTAGTCCATGGACT +
Preference number: 4 (lower is better)
Translates to: LYSWMLFATDGTQQTILAGRAPT*ARSPWT
Trigger: AGTCCATGGACTACGGGCGCACGTGGGTGCCCTTCC...AGCCAGTATGGTTTGTTGGGTACCATCTGTAGCAAATAACATCCAGCTGTACAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp AAAGGAATAGACCAGACTGCCCAGGCTAGACCAAGACAGCTGGGAGCTAGAGTGGCCGGTTGTACATTTTaGGGCACTGCGTGGAATAGA +
Preference number: 4 (lower is better)
Translates to: KGIDQTAQARPRQLGARVAGCTF*GTAWNR
Trigger: TCTATTCCACGCAGTGCCGCAAAATGTACAACCGGC...CACTCTAGCTCCCAGCTGTCTTGGTCTAGCCTGGGCAGTCTGGTCTATTCCTTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp GGGGGAAGTCTAGTTAAGAGACTTCGCTGGATACCAGGTGAGACTGGACTCCAGGCCGGTTGTACATTTTaGGGCACTGCGTGGAATAGA +
Preference number: 4 (lower is better)
Translates to: GGSLVKRLRWIPGETGLQAGCTF*GTAWNR
Trigger: TCTATTCCACGCAGTGCCGCAAAATGTACAACCGGC...CTGGAGTCCAGTCTCACCTGGTATCCAGCGAAGTCTCTTAACTAGACTTCCCCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp CTGTACAGCTGGATGTTATTTGCTACAGATGGTACCCAACAAACCATACTGGCTTCGTCGCCGAACGTGTaGAGGCGGCTGAAAGCCACG +
Preference number: 4 (lower is better)
Translates to: LYSWMLFATDGTQQTILASSPNV*RRLKAT
Trigger: CGTGGCTTTCAGCCGCCTGCACACGTTCGGCGACGA...AGCCAGTATGGTTTGTTGGGTACCATCTGTAGCAAATAACATCCAGCTGTACAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp CTGTACAGCTGGATGTTATTTGCTACAGATGGTACCCAACAAACCATACTGGCTCCGTCACGCCGTCCTTaGAGGGACATTGGCCAGTGG +
Preference number: 4 (lower is better)
Translates to: LYSWMLFATDGTQQTILAPSRRP*RDIGQW
Trigger: CCACTGGCCAATGTCCCTGCAAGGACGGCGTGACGG...AGCCAGTATGGTTTGTTGGGTACCATCTGTAGCAAATAACATCCAGCTGTACAG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp CCTGTTGTCAGAGTCTGGAGTCCTGTGGGAATTCCTAGACAGCGGGTGATGGAGTGCCTTTGGAGGCCTTaGAATAGGAGTCACAGTCTT +
Preference number: 4 (lower is better)
Translates to: PVVRVWSPVGIPRQRVMECLWRP*NRSHSL
Trigger: AAGACTGTGACTCCTATTGCAAGGCCTCCAAAGGCA...CTCCATCACCCGCTGTCTAGGAATTCCCACAGGACTCCAGACTCTGACAACAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp AGACATGCTGGTACAGAAATGAGACCCCTGCTGTACAGCTGGATGTTATTTGCTCCCTTCTTCTCCCGTTaGTGGAACTTGCGCAGCCGC +
Preference number: 4 (lower is better)
Translates to: RHAGTEMRPLLYSWMLFAPFFSR*WNLRSR
Trigger: GCGGCTGCGCAAGTTCCAGCAACGGGAGAAGAAGGG...AGCAAATAACATCCAGCTGTACAGCAGGGGTCTCATTTCTGTACCAGCATGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp GCTGTTTCCAAGTTTCCAGCAAGGAAACTCTCTGGGAGGTTTTGGTTTGCAATGCGTAGTGGAAGGGCTTaGAACGGTCGCATTCAGGGC +
Preference number: 4 (lower is better)
Translates to: AVSKFPARKLSGRFWFAMRSGRA*NGRIQG
Trigger: GCCCTGAATGCGACCGTTGCAAGCCCTTCCACTACG...CATTGCAAACCAAAACCTCCCAGAGAGTTTCCTTGCTGGAAACTTGGAAACAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp GGGGGAAGTCTAGTTAAGAGACTTCGCTGGATACCAGGTGAGACTGGACTCCAGTCTTCAGCTTGCCTTTaGAGGCCTTGCAATAGGAGT +
Preference number: 4 (lower is better)
Translates to: GGSLVKRLRWIPGETGLQSSACL*RPCNRS
Trigger: ACTCCTATTGCAAGGCCTCCAAAGGCAAGCTGAAGA...CTGGAGTCCAGTCTCACCTGGTATCCAGCGAAGTCTCTTAACTAGACTTCCCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR TCA 90 bp CTGTACAGCTGGATGTTATTTGCTACAGATGGTACCCAACAAACCATACTGGCTGCAGGCGATGTCTCGTaGGCGGATCCACAAACTCTG +
Preference number: 4 (lower is better)
Translates to: LYSWMLFATDGTQQTILAAGDVS*ADPQTL
Trigger: CAGAGTTTGTGGATCCGCTCACGAGACATCGCCTGC...AGCCAGTATGGTTTGTTGGGTACCATCTGTAGCAAATAACATCCAGCTGTACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp GGTTTCTTAACCAAGGAGTCTATGTCCCTTTTCTGGGGAGCCAGCAGTGAGGGCTGTTCATCTTCAGCTTaGCTTTGGAGGCCTTGCAAT +
Preference number: 4 (lower is better)
Translates to: GFLTKESMSLFWGASSEGCSSSA*LWRPCN
Trigger: ATTGCAAGGCCTCCAAAGGCAAGCTGAAGATGAACA...GCCCTCACTGCTGGCTCCCCAGAAAAGGGACATAGACTCCTTGGTTAAGAAACC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp AAAAGGGCTGTTTCCAAGTTTCCAGCAAGGAAACTCTCTGGGAGGTTTTGGTTTCCATGGACTTGTAGATaGCCATGGACTCTGGCCGCG +
Preference number: 4 (lower is better)
Translates to: KRAVSKFPARKLSGRFWFPWTCR*PWTLAA
Trigger: CGCGGCCAGAGTCCATGGCCATCTACAAGTCCATGG...AAACCAAAACCTCCCAGAGAGTTTCCTTGCTGGAAACTTGGAAACAGCCCTTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp CTGTACAGCTGGATGTTATTTGCTACAGATGGTACCCAACAAACCATACTGGCTTTCTTCTCCCGTTGCTaGAACTTGCGCAGCCGCCGT +
Preference number: 4 (lower is better)
Translates to: LYSWMLFATDGTQQTILAFFSRC*NLRSRR
Trigger: ACGGCGGCTGCGCAAGTTCCAGCAACGGGAGAAGAA...AGCCAGTATGGTTTGTTGGGTACCATCTGTAGCAAATAACATCCAGCTGTACAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR TCA 90 bp GCTGTTTCCAAGTTTCCAGCAAGGAAACTCTCTGGGAGGTTTTGGTTTGCAATGCATTGGCCAGTGGTTTaGTTGCAGGTCTTGCCAGCA +
Preference number: 4 (lower is better)
Translates to: AVSKFPARKLSGRFWFAMHWPVV*LQVLPA
Trigger: TGCTGGCAAGACCTGCAATCAAACCACTGGCCAATG...CATTGCAAACCAAAACCTCCCAGAGAGTTTCCTTGCTGGAAACTTGGAAACAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp AGACATGCTGGTACAGAAATGAGACCCCTGCTGTACAGCTGGATGTTATTTGCTGTGCACACGGCCTCCTaGTCGTTCTGTTTGGTGATA +
Preference number: 4 (lower is better)
Translates to: RHAGTEMRPLLYSWMLFAVHTAS*SFCLVI
Trigger: TATCACCAAACAGAACGAGCAGGAGGCCGTGTGCAC...AGCAAATAACATCCAGCTGTACAGCAGGGGTCTCATTTCTGTACCAGCATGTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp CTGTACAGCTGGATGTTATTTGCTACAGATGGTACCCAACAAACCATACTGGCTTGCGCCCGTAGTCCATaGACTTGTAGATGGCCATGG +
Preference number: 4 (lower is better)
Translates to: LYSWMLFATDGTQQTILACARSP*TCRWPW
Trigger: CCATGGCCATCTACAAGTCCATGGACTACGGGCGCA...AGCCAGTATGGTTTGTTGGGTACCATCTGTAGCAAATAACATCCAGCTGTACAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp GGGGGAAGTCTAGTTAAGAGACTTCGCTGGATACCAGGTGAGACTGGACTCCAGCAGCATAGTCCTTCCTaGAGTATTTCTTCATGTTCA +
Preference number: 4 (lower is better)
Translates to: GGSLVKRLRWIPGETGLQQHSPS*SISSCS
Trigger: TGAACATGAAGAAATACTGCAGGAAGGACTATGCTG...CTGGAGTCCAGTCTCACCTGGTATCCAGCGAAGTCTCTTAACTAGACTTCCCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp GCTGTTTCCAAGTTTCCAGCAAGGAAACTCTCTGGGAGGTTTTGGTTTGCAATGATACGACTTGTGCCCTaGTTGTACACGGAGATGATG +
Preference number: 4 (lower is better)
Translates to: AVSKFPARKLSGRFWFAMIRLVP*LYTEMM
Trigger: CATCATCTCCGTGTACAAGCAGGGCACAAGTCGTAT...CATTGCAAACCAAAACCTCCCAGAGAGTTTCCTTGCTGGAAACTTGGAAACAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp AAAAGGGCTGTTTCCAAGTTTCCAGCAAGGAAACTCTCTGGGAGGTTTTGGTTTTTTTGCGGCACTGCGTaGAATAGAACTGGAAGGGCA +
Preference number: 4 (lower is better)
Translates to: KRAVSKFPARKLSGRFWFFCGTA*NRTGRA
Trigger: TGCCCTTCCAGTTCTATTCCACGCAGTGCCGCAAAA...AAACCAAAACCTCCCAGAGAGTTTCCTTGCTGGAAACTTGGAAACAGCCCTTTT
47% GC, longest homopolymer 7 nt, total homopolymer stretches 15 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CCA 90 bp CTGTACAGCTGGATGTTATTTGCTACAGATGGTACCCAACAAACCATACTGGCTTCTTCAGCTTGCCTTTaGAGGCCTTGCAATAGGAGT +
Preference number: 4 (lower is better)
Translates to: LYSWMLFATDGTQQTILASSACL*RPCNRS
Trigger: ACTCCTATTGCAAGGCCTCCAAAGGCAAGCTGAAGA...AGCCAGTATGGTTTGTTGGGTACCATCTGTAGCAAATAACATCCAGCTGTACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR GCA 90 bp AGACATGCTGGTACAGAAATGAGACCCCTGCTGTACAGCTGGATGTTATTTGCTCAGCATAGTCCTTCCTaGAGTATTTCTTCATGTTCA +
Preference number: 4 (lower is better)
Translates to: RHAGTEMRPLLYSWMLFAQHSPS*SISSCS
Trigger: TGAACATGAAGAAATACTGCAGGAAGGACTATGCTG...AGCAAATAACATCCAGCTGTACAGCAGGGGTCTCATTTCTGTACCAGCATGTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CCA 90 bp CGCGGGTGTCCATTCTCATCCGAGCAAGGATCAGGCTGCGCCGCCTaGCCGGCGAACATGCTAAGCCCGGGCCCGCCGCGCACCGCGCCC +
Preference number: 5 (lower is better)
Translates to: RGCPFSSEQGSGCAA*PANMLSPGPPRTAP
Trigger: GGGCGCGGTGCGCGGCGGGCCCGGGCTTAGCATGTTCGCCGGCCAGGCGGCGCAGCCTGATCCTTGCTCGGATGAGAATGGACACCCGCG
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
ENSMUST00000135141.2
CDS GCA 90 bp ATGCAGCGGCGCGGGTGTCCATTCTCATCCGAGCAAGGATCAGGCTaGGCCGCCTGGCCGGCGAACATGCTAAGCCCGGGCCCGCCGCGC +
Preference number: 5 (lower is better)
Translates to: MQRRGCPFSSEQGSG*AAWPANMLSPGPPR
Trigger: GCGCGGCGGGCCCGGGCTTAGCATGTTCGCCGGCCAGGCGGCGCAGCCTGATCCTTGCTCGGATGAGAATGGACACCCGCGCCGCTGCAT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
ENSMUST00000135141.2
CDS GCA 90 bp AGGCGGCTGAAAGCCACGCGGATGTCGGTGGCCGTGACCCAGTCCTaGAGCACCGGCGAGTTGTCGAAGTCGTGCGCCGAGGGCCGCCCG +
Preference number: 5 (lower is better)
Translates to: RRLKATRMSVAVTQS*STGELSKSCAEGRP
Trigger: CGGGCGGCCCTCGGCGCACGACTTCGACAACTCGCCGGTGCTGCAGGACTGGGTCACGGCCACCGACATCCGCGTGGCTTTCAGCCGCCT
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS TCA 90 bp GCGAGTTGTCGAAGTCGTGCGCCGAGGGCCGCCCGTCCAGCGTGCTaGAAGCGATCAGCCCGCCAGAGAGCGGGCGCATGTCGGTGTGCG +
Preference number: 5 (lower is better)
Translates to: ASCRSRAPRAARPAC*KRSARQRAGACRCA
Trigger: CGCACACCGACATGCGCCCGCTCTCTGGCGGGCTGATCGCTTTCAGCACGCTGGACGGGCGGCCCTCGGCGCACGACTTCGACAACTCGC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS GCA 90 bp GTGGCCGTGACCCAGTCCTGCAGCACCGGCGAGTTGTCGAAGTCGTaGGCCGAGGGCCGCCCGTCCAGCGTGCTGAAAGCGATCAGCCCG +
Preference number: 5 (lower is better)
Translates to: VAVTQSCSTGELSKS*AEGRPSSVLKAISP
Trigger: CGGGCTGATCGCTTTCAGCACGCTGGACGGGCGGCCCTCGGCGCACGACTTCGACAACTCGCCGGTGCTGCAGGACTGGGTCACGGCCAC
70% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GCAGGCCCCAGGAGAACTCTCCCCTCCCTACAGATGGTGAACTCCACCCAGGAGCGCGCCGCGTGGCCGTaGCACTTGCAGCGGCCGCCA +
Preference number: 5 (lower is better)
Translates to: AGPRRTLPSLQMVNSTQERAAWP*HLQRPP
Trigger: TGGCGGCCGCTGCAAGTGCAACGGCCACGCGGCGCG...CTCCTGGGTGGAGTTCACCATCTGTAGGGAGGGGAGAGTTCTCCTGGGGCCTGC
69% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GGAAGCCACCTGACCCTTGCCAGGGTAGGTCTGTGTGCTCATGCCAGCCTCCCTCAGGCCACGCACTCGTaGGCCTCGCGGGCCGTGGCG +
Preference number: 5 (lower is better)
Translates to: GSHLTLARVGLCAHASLPQATHS*ASRAVA
Trigger: CGCCACGGCCCGCGAGGCCAACGAGTGCGTGGCCTG...AGGGAGGCTGGCATGAGCACACAGACCTACCCTGGCAAGGGTCAGGTGGCTTCC
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS GCA 90 bp TCGCGCGCCAGCTCCGAGTCGTCTTCGTTCTCGTCGCCGAACGTGTaGAGGCGGCTGAAAGCCACGCGGATGTCGGTGGCCGTGACCCAG +
Preference number: 5 (lower is better)
Translates to: SRASSESSSFSSPNV*RRLKATRMSVAVTQ
Trigger: CTGGGTCACGGCCACCGACATCCGCGTGGCTTTCAGCCGCCTGCACACGTTCGGCGACGAGAACGAAGACGACTCGGAGCTGGCGCGCGA
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS GCA 90 bp GAGAGCGGGCGCATGTCGGTGTGCGAGTCGGTGCACACGGCCTCCTaGTCGTTCTGTTTGGTGATAGGCGCGCGGTGCGGCCGGTTGTAC +
Preference number: 5 (lower is better)
Translates to: ESGRMSVCESVHTAS*SFCLVIGARCGRLY
Trigger: GTACAACCGGCCGCACCGCGCGCCTATCACCAAACAGAACGAGCAGGAGGCCGTGTGCACCGACTCGCACACCGACATGCGCCCGCTCTC
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS GCA 90 bp CCAGACTGTCGTCTCGGTCGCGCACGCAACGCGCCGCGTGGCCGTTaGACTTGCAGCGGCCGCCAACCTGCAGGTCAGACACTGCATAGT +
Preference number: 5 (lower is better)
Translates to: PDCRLGRARNAPRGR*TCSGRQPAGQTLHS
Trigger: ACTATGCAGTGTCTGACCTGCAGGTTGGCGGCCGCTGCAAGTGCAACGGCCACGCGGCGCGTTGCGTGCGCGACCGAGACGACAGTCTGG
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS GCA 90 bp TGCGCAGCCGCCGTGCCCATGTGTCCCGCCACTGGATCACCAGGCTaGTCTTGTCTGCCACGATGCCACTCTGGTCAGGTGAGTCCTCGG +
Preference number: 5 (lower is better)
Translates to: CAAAVPMCPATGSPG*SCLPRCHSGQVSPR
Trigger: CCGAGGACTCACCTGACCAGAGTGGCATCGTGGCAGACAAGAGCAGCCTGGTGATCCAGTGGCGGGACACATGGGCACGGCGGCTGCGCA
66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS TCA 90 bp AAGGCGGGCGGGTGCGCTTTCTTGGGATCCGAAGAGTTGCAGAGGTaGCAGGAGCGCAGCCGCTCTTCACCACGCTCGCTCACCACGCAG +
Preference number: 5 (lower is better)
Translates to: KAGGCAFLGSEELQR*QERSRSSPRSLTTQ
Trigger: CTGCGTGGTGAGCGAGCGTGGTGAAGAGCGGCTGCGCTCCTGTCACCTCTGCAACTCTTCGGATCCCAAGAAAGCGCACCCGCCCGCCTT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
ENSMUST00000135141.2
CDS GCA 90 bp TGTCGTCTCGGTCGCGCACGCAACGCGCCGCGTGGCCGTTGCACTTaGAGCGGCCGCCAACCTGCAGGTCAGACACTGCATAGTAATAGG +
Preference number: 5 (lower is better)
Translates to: CRLGRARNAPRGRCT*SGRQPAGQTLHSNR
Trigger: CCTATTACTATGCAGTGTCTGACCTGCAGGTTGGCGGCCGCTGCAAGTGCAACGGCCACGCGGCGCGTTGCGTGCGCGACCGAGACGACA
64% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GGAAGCCACCTGACCCTTGCCAGGGTAGGTCTGTGTGCTCATGCCAGCCTCCCTTGCAGCACCGGCGAGTaGTCGAAGTCGTGCGCCGAG +
Preference number: 5 (lower is better)
Translates to: GSHLTLARVGLCAHASLPCSTGE*SKSCAE
Trigger: CTCGGCGCACGACTTCGACAACTCGCCGGTGCTGCA...AGGGAGGCTGGCATGAGCACACAGACCTACCCTGGCAAGGGTCAGGTGGCTTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GCAGGCCCCAGGAGAACTCTCCCCTCCCTACAGATGGTGAACTCCACCCAGGAGTGGCGGCCCGCAGTGTaGTGGCGGCAGTTGAGACAG +
Preference number: 5 (lower is better)
Translates to: AGPRRTLPSLQMVNSTQEWRPAV*WRQLRQ
Trigger: CTGTCTCAACTGCCGCCACAACACTGCGGGCCGCCA...CTCCTGGGTGGAGTTCACCATCTGTAGGGAGGGGAGAGTTCTCCTGGGGCCTGC
64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GGAAGCCACCTGACCCTTGCCAGGGTAGGTCTGTGTGCTCATGCCAGCCTCCCTTGGCGGCCCGCAGTGTaGTGGCGGCAGTTGAGACAG +
Preference number: 5 (lower is better)
Translates to: GSHLTLARVGLCAHASLPWRPAV*WRQLRQ
Trigger: CTGTCTCAACTGCCGCCACAACACTGCGGGCCGCCA...AGGGAGGCTGGCATGAGCACACAGACCTACCCTGGCAAGGGTCAGGTGGCTTCC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GAACTCCACCCAGGAGACCAGCCCAGCAGGTGGCAGTGGAGACCAAAGCTGGCTCCCGTCACGCCGTCCTaGCAGGGACATTGGCCAGTG +
Preference number: 5 (lower is better)
Translates to: ELHPGDQPSRWQWRPKLAPVTPS*QGHWPV
Trigger: CACTGGCCAATGTCCCTGCAAGGACGGCGTGACGGG...AGCCAGCTTTGGTCTCCACTGCCACCTGCTGGGCTGGTCTCCTGGGTGGAGTTC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS GCA 90 bp GCACTTGCCCTTCTTCTCCCGTTGCTGGAACTTGCGCAGCCGCCGTaGCCATGTGTCCCGCCACTGGATCACCAGGCTGCTCTTGTCTGC +
Preference number: 5 (lower is better)
Translates to: ALALLLPLLELAQPP*PCVPPLDHQAALVC
Trigger: GCAGACAAGAGCAGCCTGGTGATCCAGTGGCGGGACACATGGGCACGGCGGCTGCGCAAGTTCCAGCAACGGGAGAAGAAGGGCAAGTGC
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CCA 90 bp CGTTGCTGGAACTTGCGCAGCCGCCGTGCCCATGTGTCCCGCCACTaGATCACCAGGCTGCTCTTGTCTGCCACGATGCCACTCTGGTCA +
Preference number: 5 (lower is better)
Translates to: RCWNLRSRRAHVSRH*ITRLLLSATMPLWS
Trigger: TGACCAGAGTGGCATCGTGGCAGACAAGAGCAGCCTGGTGATCCAGTGGCGGGACACATGGGCACGGCGGCTGCGCAAGTTCCAGCAACG
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GGGGGAAGTCTAGTTAAGAGACTTCGCTGGATACCAGGTGAGACTGGACTCCAGCGCGCCGCGTGGCCGTaGCACTTGCAGCGGCCGCCA +
Preference number: 5 (lower is better)
Translates to: GGSLVKRLRWIPGETGLQRAAWP*HLQRPP
Trigger: TGGCGGCCGCTGCAAGTGCAACGGCCACGCGGCGCG...CTGGAGTCCAGTCTCACCTGGTATCCAGCGAAGTCTCTTAACTAGACTTCCCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GGGGGAAGTCTAGTTAAGAGACTTCGCTGGATACCAGGTGAGACTGGACTCCAGCAGGCCACGCACTCGTaGGCCTCGCGGGCCGTGGCG +
Preference number: 5 (lower is better)
Translates to: GGSLVKRLRWIPGETGLQQATHS*ASRAVA
Trigger: CGCCACGGCCCGCGAGGCCAACGAGTGCGTGGCCTG...CTGGAGTCCAGTCTCACCTGGTATCCAGCGAAGTCTCTTAACTAGACTTCCCCC
63% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GGAAGCCACCTGACCCTTGCCAGGGTAGGTCTGTGTGCTCATGCCAGCCTCCCTGGCGCCACAGGAATCTaGATGCAAGGGGCGATGGGG +
Preference number: 5 (lower is better)
Translates to: GSHLTLARVGLCAHASLPGATGI*MQGAMG
Trigger: CCCCATCGCCCCTTGCATCAAGATTCCTGTGGCGCC...AGGGAGGCTGGCATGAGCACACAGACCTACCCTGGCAAGGGTCAGGTGGCTTCC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GCAGGCCCCAGGAGAACTCTCCCCTCCCTACAGATGGTGAACTCCACCCAGGAGGCCCTTCTTCTCCCGTaGCTGGAACTTGCGCAGCCG +
Preference number: 5 (lower is better)
Translates to: AGPRRTLPSLQMVNSTQEALLLP*LELAQP
Trigger: CGGCTGCGCAAGTTCCAGCAACGGGAGAAGAAGGGC...CTCCTGGGTGGAGTTCACCATCTGTAGGGAGGGGAGAGTTCTCCTGGGGCCTGC
63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS GCA 90 bp GTGCTGAAAGCGATCAGCCCGCCAGAGAGCGGGCGCATGTCGGTGTaGGAGTCGGTGCACACGGCCTCCTGCTCGTTCTGTTTGGTGATA +
Preference number: 5 (lower is better)
Translates to: VLKAISPPESGRMSV*ESVHTASCSFCLVI
Trigger: TATCACCAAACAGAACGAGCAGGAGGCCGTGTGCACCGACTCGCACACCGACATGCGCCCGCTCTCTGGCGGGCTGATCGCTTTCAGCAC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GCAGGCCCCAGGAGAACTCTCCCCTCCCTACAGATGGTGAACTCCACCCAGGAGCCGCGGCGAGCAGAATaGCAGGCTCACATAGGTCAC +
Preference number: 5 (lower is better)
Translates to: AGPRRTLPSLQMVNSTQEPRRAE*QAHIGH
Trigger: GTGACCTATGTGAGCCTGCAATTCTGCTCGCCGCGG...CTCCTGGGTGGAGTTCACCATCTGTAGGGAGGGGAGAGTTCTCCTGGGGCCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GCAGGCCCCAGGAGAACTCTCCCCTCCCTACAGATGGTGAACTCCACCCAGGAGTCCTGCTCGTTCTGTTaGGTGATAGGCGCGCGGTGC +
Preference number: 5 (lower is better)
Translates to: AGPRRTLPSLQMVNSTQESCSFC*VIGARC
Trigger: GCACCGCGCGCCTATCACCAAACAGAACGAGCAGGA...CTCCTGGGTGGAGTTCACCATCTGTAGGGAGGGGAGAGTTCTCCTGGGGCCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GAGACTGGACTCCAGGGTTCAAGGGTGGAAGCTGGCCAGAGCATTAGACATGCTGCGTGGCCGTTGCACTaGCAGCGGCCGCCAACCTGC +
Preference number: 5 (lower is better)
Translates to: ETGLQGSRVEAGQSIRHAAWPLH*QRPPTC
Trigger: GCAGGTTGGCGGCCGCTGCAAGTGCAACGGCCACGC...AGCATGTCTAATGCTCTGGCCAGCTTCCACCCTTGAACCCTGGAGTCCAGTCTC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GCAGGCCCCAGGAGAACTCTCCCCTCCCTACAGATGGTGAACTCCACCCAGGAGCACCAGTCCCCTGCTTaGTCGGCCTTCAGGATGTGG +
Preference number: 5 (lower is better)
Translates to: AGPRRTLPSLQMVNSTQEHQSPA*SAFRMW
Trigger: CCACATCCTGAAGGCCGACAAAGCAGGGGACTGGTG...CTCCTGGGTGGAGTTCACCATCTGTAGGGAGGGGAGAGTTCTCCTGGGGCCTGC
62% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CCA 90 bp AGGGCACCCACGTGCGCCCGTAGTCCATGGACTTGTAGATGGCCATaGACTCTGGCCGCGGCGAGCAGAATTGCAGGCTCACATAGGTCA +
Preference number: 5 (lower is better)
Translates to: RAPTCARSPWTCRWP*TLAAASRIAGSHRS
Trigger: TGACCTATGTGAGCCTGCAATTCTGCTCGCCGCGGCCAGAGTCCATGGCCATCTACAAGTCCATGGACTACGGGCGCACGTGGGTGCCCT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CCA 90 bp ACTGGAAGGGCACCCACGTGCGCCCGTAGTCCATGGACTTGTAGATaGCCATGGACTCTGGCCGCGGCGAGCAGAATTGCAGGCTCACAT +
Preference number: 5 (lower is better)
Translates to: TGRAPTCARSPWTCR*PWTLAAASRIAGSH
Trigger: ATGTGAGCCTGCAATTCTGCTCGCCGCGGCCAGAGTCCATGGCCATCTACAAGTCCATGGACTACGGGCGCACGTGGGTGCCCTTCCAGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GAACTCCACCCAGGAGACCAGCCCAGCAGGTGGCAGTGGAGACCAAAGCTGGCTTGCCAGCACGTCAGGTaGTGCGGGTTATTGAGGTCG +
Preference number: 5 (lower is better)
Translates to: ELHPGDQPSRWQWRPKLACQHVR*CGLLRS
Trigger: CGACCTCAATAACCCGCACAACCTGACGTGCTGGCA...AGCCAGCTTTGGTCTCCACTGCCACCTGCTGGGCTGGTCTCCTGGGTGGAGTTC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GCAGCTCCAGCAGAGGCAGTGACCACCCGGCTTGACTTCAGGGTCCTTAGGCCCGTCACCTCAAACTTCTaGCCGAGCGACAGAGTGAGC +
Preference number: 5 (lower is better)
Translates to: AAPAEAVTTRLDFRVLRPVTSNF*PSDRVS
Trigger: GCTCACTCTGTCGCTCGGCAAGAAGTTTGAGGTGAC...GGGCCTAAGGACCCTGAAGTCAAGCCGGGTGGTCACTGCCTCTGCTGGAGCTGC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GCAGGCCCCAGGAGAACTCTCCCCTCCCTACAGATGGTGAACTCCACCCAGGAGTGGCAATCACAGGCTTaGCAAGCCTTCCGGTGGGTG +
Preference number: 5 (lower is better)
Translates to: AGPRRTLPSLQMVNSTQEWQSQA*QAFRWV
Trigger: CACCCACCGGAAGGCTTGCAAAGCCTGTGATTGCCA...CTCCTGGGTGGAGTTCACCATCTGTAGGGAGGGGAGAGTTCTCCTGGGGCCTGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CCA 90 bp GCGTGGAATAGAACTGGAAGGGCACCCACGTGCGCCCGTAGTCCATaGACTTGTAGATGGCCATGGACTCTGGCCGCGGCGAGCAGAATT +
Preference number: 5 (lower is better)
Translates to: AWNRTGRAPTCARSP*TCRWPWTLAAASRI
Trigger: AATTCTGCTCGCCGCGGCCAGAGTCCATGGCCATCTACAAGTCCATGGACTACGGGCGCACGTGGGTGCCCTTCCAGTTCTATTCCACGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp CCTGTTGTCAGAGTCTGGAGTCCTGTGGGAATTCCTAGACAGCGGGTGATGGAGGCGCGGTGCGGCCGGTaGTACATTTTGCGGCACTGC +
Preference number: 5 (lower is better)
Translates to: PVVRVWSPVGIPRQRVMEARCGR*YILRHC
Trigger: GCAGTGCCGCAAAATGTACAACCGGCCGCACCGCGC...CTCCATCACCCGCTGTCTAGGAATTCCCACAGGACTCCAGACTCTGACAACAGG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GCCTGGGGACCTCCACAAAGAAGGCAGCCAGAAAGGAATAGACCAGACTGCCCATCAGGGCCGGCCGTGTaGTGCCTACAGTCACACACC +
Preference number: 5 (lower is better)
Translates to: AWGPPQRRQPERNRPDCPSGPAV*CLQSHT
Trigger: GGTGTGTGACTGTAGGCACAACACGGCCGGCCCTGA...TGGGCAGTCTGGTCTATTCCTTTCTGGCTGCCTTCTTTGTGGAGGTCCCCAGGC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GCCTGGGGACCTCCACAAAGAAGGCAGCCAGAAAGGAATAGACCAGACTGCCCAGTGTTGTGGCGGCAGTaGAGACAGACTCCCCCGCTC +
Preference number: 5 (lower is better)
Translates to: AWGPPQRRQPERNRPDCPVLWRQ*RQTPPL
Trigger: GAGCGGGGGAGTCTGTCTCAACTGCCGCCACAACAC...TGGGCAGTCTGGTCTATTCCTTTCTGGCTGCCTTCTTTGTGGAGGTCCCCAGGC
60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp TTGCCCTCAATCTCAAGCTTGGACCAGGGAAGCCACCTGACCCTTGCCAGGGTAGCCCTTCTTCTCCCGTaGCTGGAACTTGCGCAGCCG +
Preference number: 5 (lower is better)
Translates to: LPSISSLDQGSHLTLARVALLLP*LELAQP
Trigger: CGGCTGCGCAAGTTCCAGCAACGGGAGAAGAAGGGC...TACCCTGGCAAGGGTCAGGTGGCTTCCCTGGTCCAAGCTTGAGATTGAGGGCAA
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CCA 90 bp CCACGTGCGCCCGTAGTCCATGGACTTGTAGATGGCCATGGACTCTaGCCGCGGCGAGCAGAATTGCAGGCTCACATAGGTCACCTCAAA +
Preference number: 5 (lower is better)
Translates to: PRAPVVHGLVDGHGL*PRRAELQAHIGHLK
Trigger: TTTGAGGTGACCTATGTGAGCCTGCAATTCTGCTCGCCGCGGCCAGAGTCCATGGCCATCTACAAGTCCATGGACTACGGGCGCACGTGG
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp TTGCCCTCAATCTCAAGCTTGGACCAGGGAAGCCACCTGACCCTTGCCAGGGTATTGCCGAAGGCCGCGTaGACAAAGTCCGGGATGCAG +
Preference number: 5 (lower is better)
Translates to: LPSISSLDQGSHLTLARVLPKAA*TKSGMQ
Trigger: CTGCATCCCGGACTTTGTCAACGCGGCCTTCGGCAA...TACCCTGGCAAGGGTCAGGTGGCTTCCCTGGTCCAAGCTTGAGATTGAGGGCAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GCCTGGGGACCTCCACAAAGAAGGCAGCCAGAAAGGAATAGACCAGACTGCCCATCCTGCTCGTTCTGTTaGGTGATAGGCGCGCGGTGC +
Preference number: 5 (lower is better)
Translates to: AWGPPQRRQPERNRPDCPSCSFC*VIGARC
Trigger: GCACCGCGCGCCTATCACCAAACAGAACGAGCAGGA...TGGGCAGTCTGGTCTATTCCTTTCTGGCTGCCTTCTTTGTGGAGGTCCCCAGGC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GAGACTGGACTCCAGGGTTCAAGGGTGGAAGCTGGCCAGAGCATTAGACATGCTGTGTTGTGGCGGCAGTaGAGACAGACTCCCCCGCTC +
Preference number: 5 (lower is better)
Translates to: ETGLQGSRVEAGQSIRHAVLWRQ*RQTPPL
Trigger: GAGCGGGGGAGTCTGTCTCAACTGCCGCCACAACAC...AGCATGTCTAATGCTCTGGCCAGCTTCCACCCTTGAACCCTGGAGTCCAGTCTC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GGGGGAAGTCTAGTTAAGAGACTTCGCTGGATACCAGGTGAGACTGGACTCCAGCCCGTCACGCCGTCCTaGCAGGGACATTGGCCAGTG +
Preference number: 5 (lower is better)
Translates to: GGSLVKRLRWIPGETGLQPVTPS*QGHWPV
Trigger: CACTGGCCAATGTCCCTGCAAGGACGGCGTGACGGG...CTGGAGTCCAGTCTCACCTGGTATCCAGCGAAGTCTCTTAACTAGACTTCCCCC
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS TCA 90 bp GCAGGCTCACATAGGTCACCTCAAACTTCTTGCCGAGCGACAGAGTaGGCGTCACGTTGTGCGGGAACTGCAGGTAGTTCTCGGACTGCC +
Preference number: 5 (lower is better)
Translates to: AGSHRSPQTSCRATE*ASRCAGTAGSSRTA
Trigger: GGCAGTCCGAGAACTACCTGCAGTTCCCGCACAACGTGACGCTCACTCTGTCGCTCGGCAAGAAGTTTGAGGTGACCTATGTGAGCCTGC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
ENSMUST00000135141.2
CDS GCA 90 bp ACATTTTGCGGCACTGCGTGGAATAGAACTGGAAGGGCACCCACGTaGGCCCGTAGTCCATGGACTTGTAGATGGCCATGGACTCTGGCC +
Preference number: 5 (lower is better)
Translates to: TFCGTAWNRTGRAPT*ARSPWTCRWPWTLA
Trigger: GGCCAGAGTCCATGGCCATCTACAAGTCCATGGACTACGGGCGCACGTGGGTGCCCTTCCAGTTCTATTCCACGCAGTGCCGCAAAATGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS GCA 90 bp ATGTGTCCCGCCACTGGATCACCAGGCTGCTCTTGTCTGCCACGATaGCACTCTGGTCAGGTGAGTCCTCGGCATTACCCAACAGCAAGT +
Preference number: 5 (lower is better)
Translates to: MCPATGSPGCSCLPR*HSGQVSPRHYPTAS
Trigger: ACTTGCTGTTGGGTAATGCCGAGGACTCACCTGACCAGAGTGGCATCGTGGCAGACAAGAGCAGCCTGGTGATCCAGTGGCGGGACACAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp CCTGTTGTCAGAGTCTGGAGTCCTGTGGGAATTCCTAGACAGCGGGTGATGGAGTTGCCGAAGGCCGCGTaGACAAAGTCCGGGATGCAG +
Preference number: 5 (lower is better)
Translates to: PVVRVWSPVGIPRQRVMELPKAA*TKSGMQ
Trigger: CTGCATCCCGGACTTTGTCAACGCGGCCTTCGGCAA...CTCCATCACCCGCTGTCTAGGAATTCCCACAGGACTCCAGACTCTGACAACAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GCCTGGGGACCTCCACAAAGAAGGCAGCCAGAAAGGAATAGACCAGACTGCCCAAGGTTGTGCGGGTTATaGAGGTCGGTGAGGAAGGCG +
Preference number: 5 (lower is better)
Translates to: AWGPPQRRQPERNRPDCPRLCGL*RSVRKA
Trigger: CGCCTTCCTCACCGACCTCAATAACCCGCACAACCT...TGGGCAGTCTGGTCTATTCCTTTCTGGCTGCCTTCTTTGTGGAGGTCCCCAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp AAAGGAATAGACCAGACTGCCCAGGCTAGACCAAGACAGCTGGGAGCTAGAGTGGGCGCCACAGGAATCTaGATGCAAGGGGCGATGGGG +
Preference number: 5 (lower is better)
Translates to: KGIDQTAQARPRQLGARVGATGI*MQGAMG
Trigger: CCCCATCGCCCCTTGCATCAAGATTCCTGTGGCGCC...CACTCTAGCTCCCAGCTGTCTTGGTCTAGCCTGGGCAGTCTGGTCTATTCCTTT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CCA 90 bp TTGGGACACTTGCAGGCGATGTCTCGTGAGCGGATCCACAAACTCTaGTCACCACGGCGAATACGACTTGTGCCCTGCTTGTACACGGAG +
Preference number: 5 (lower is better)
Translates to: LGHLQAMSRERIHKL*SPRRIRLVPCLYTE
Trigger: CTCCGTGTACAAGCAGGGCACAAGTCGTATTCGCCGTGGTGACCAGAGTTTGTGGATCCGCTCACGAGACATCGCCTGCAAGTGTCCCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CCA 90 bp CGCCACTGGATCACCAGGCTGCTCTTGTCTGCCACGATGCCACTCTaGTCAGGTGAGTCCTCGGCATTACCCAACAGCAAGTACTTCTTG +
Preference number: 5 (lower is better)
Translates to: RHWITRLLLSATMPL*SGESSALPNSKYFL
Trigger: CAAGAAGTACTTGCTGTTGGGTAATGCCGAGGACTCACCTGACCAGAGTGGCATCGTGGCAGACAAGAGCAGCCTGGTGATCCAGTGGCG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GAGACTGGACTCCAGGGTTCAAGGGTGGAAGCTGGCCAGAGCATTAGACATGCTAGGTTGTGCGGGTTATaGAGGTCGGTGAGGAAGGCG +
Preference number: 5 (lower is better)
Translates to: ETGLQGSRVEAGQSIRHARLCGL*RSVRKA
Trigger: CGCCTTCCTCACCGACCTCAATAACCCGCACAACCT...AGCATGTCTAATGCTCTGGCCAGCTTCCACCCTTGAACCCTGGAGTCCAGTCTC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp CCTGTTGTCAGAGTCTGGAGTCCTGTGGGAATTCCTAGACAGCGGGTGATGGAGTGCCAGCACGTCAGGTaGTGCGGGTTATTGAGGTCG +
Preference number: 5 (lower is better)
Translates to: PVVRVWSPVGIPRQRVMECQHVR*CGLLRS
Trigger: CGACCTCAATAACCCGCACAACCTGACGTGCTGGCA...CTCCATCACCCGCTGTCTAGGAATTCCCACAGGACTCCAGACTCTGACAACAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GGGGGAAGTCTAGTTAAGAGACTTCGCTGGATACCAGGTGAGACTGGACTCCAGCACCAGTCCCCTGCTTaGTCGGCCTTCAGGATGTGG +
Preference number: 5 (lower is better)
Translates to: GGSLVKRLRWIPGETGLQHQSPA*SAFRMW
Trigger: CCACATCCTGAAGGCCGACAAAGCAGGGGACTGGTG...CTGGAGTCCAGTCTCACCTGGTATCCAGCGAAGTCTCTTAACTAGACTTCCCCC
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GGAAGCCACCTGACCCTTGCCAGGGTAGGTCTGTGTGCTCATGCCAGCCTCCCTTACTTCTTGAGGGGCTaGATTTTGGGACACTTGCAG +
Preference number: 5 (lower is better)
Translates to: GSHLTLARVGLCAHASLPYFLRG*ILGHLQ
Trigger: CTGCAAGTGTCCCAAAATCAAGCCCCTCAAGAAGTA...AGGGAGGCTGGCATGAGCACACAGACCTACCCTGGCAAGGGTCAGGTGGCTTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GCAGCTCCAGCAGAGGCAGTGACCACCCGGCTTGACTTCAGGGTCCTTAGGCCCAACAGCAAGTACTTCTaGAGGGGCTTGATTTTGGGA +
Preference number: 5 (lower is better)
Translates to: AAPAEAVTTRLDFRVLRPNSKYF*RGLILG
Trigger: TCCCAAAATCAAGCCCCTCAAGAAGTACTTGCTGTT...GGGCCTAAGGACCCTGAAGTCAAGCCGGGTGGTCACTGCCTCTGCTGGAGCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS TCA 90 bp GATCACCAGGCTGCTCTTGTCTGCCACGATGCCACTCTGGTCAGGTaGGTCCTCGGCATTACCCAACAGCAAGTACTTCTTGAGGGGCTT +
Preference number: 5 (lower is better)
Translates to: DHQAALVCHDATLVR*VLGITQQQVLLEGL
Trigger: AAGCCCCTCAAGAAGTACTTGCTGTTGGGTAATGCCGAGGACTCACCTGACCAGAGTGGCATCGTGGCAGACAAGAGCAGCCTGGTGATC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp AAAAGGGCTGTTTCCAAGTTTCCAGCAAGGAAACTCTCTGGGAGGTTTTGGTTTGCGTGGCCGTTGCACTaGCAGCGGCCGCCAACCTGC +
Preference number: 5 (lower is better)
Translates to: KRAVSKFPARKLSGRFWFAWPLH*QRPPTC
Trigger: GCAGGTTGGCGGCCGCTGCAAGTGCAACGGCCACGC...AAACCAAAACCTCCCAGAGAGTTTCCTTGCTGGAAACTTGGAAACAGCCCTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GGGGGAAGTCTAGTTAAGAGACTTCGCTGGATACCAGGTGAGACTGGACTCCAGTGGCAATCACAGGCTTaGCAAGCCTTCCGGTGGGTG +
Preference number: 5 (lower is better)
Translates to: GGSLVKRLRWIPGETGLQWQSQA*QAFRWV
Trigger: CACCCACCGGAAGGCTTGCAAAGCCTGTGATTGCCA...CTGGAGTCCAGTCTCACCTGGTATCCAGCGAAGTCTCTTAACTAGACTTCCCCC
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GGTTTCTTAACCAAGGAGTCTATGTCCCTTTTCTGGGGAGCCAGCAGTGAGGGCCACGGCGAATACGACTaGTGCCCTGCTTGTACACGG +
Preference number: 5 (lower is better)
Translates to: GFLTKESMSLFWGASSEGHGEYD*CPACTR
Trigger: CCGTGTACAAGCAGGGCACAAGTCGTATTCGCCGTG...GCCCTCACTGCTGGCTCCCCAGAAAAGGGACATAGACTCCTTGGTTAAGAAACC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GCCTGGGGACCTCCACAAAGAAGGCAGCCAGAAAGGAATAGACCAGACTGCCCATTGAGGGGCTTGATTTaGGGACACTTGCAGGCGATG +
Preference number: 5 (lower is better)
Translates to: AWGPPQRRQPERNRPDCPLRGLI*GHLQAM
Trigger: CATCGCCTGCAAGTGTCCCAAAATCAAGCCCCTCAA...TGGGCAGTCTGGTCTATTCCTTTCTGGCTGCCTTCTTTGTGGAGGTCCCCAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS GCA 90 bp CGGATCCACAAACTCTGGTCACCACGGCGAATACGACTTGTGCCCTaGTTGTACACGGAGATGATGTTCACGGTGAACTTCCACCAGTCC +
Preference number: 5 (lower is better)
Translates to: RIHKLWSPRRIRLVP*LYTEMMFTVNFHQS
Trigger: GGACTGGTGGAAGTTCACCGTGAACATCATCTCCGTGTACAAGCAGGGCACAAGTCGTATTCGCCGTGGTGACCAGAGTTTGTGGATCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp CCTGTTGTCAGAGTCTGGAGTCCTGTGGGAATTCCTAGACAGCGGGTGATGGAGCGACTTGTGCCCTGCTaGTACACGGAGATGATGTTC +
Preference number: 5 (lower is better)
Translates to: PVVRVWSPVGIPRQRVMERLVPC*YTEMMF
Trigger: GAACATCATCTCCGTGTACAAGCAGGGCACAAGTCG...CTCCATCACCCGCTGTCTAGGAATTCCCACAGGACTCCAGACTCTGACAACAGG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp TTGCCCTCAATCTCAAGCTTGGACCAGGGAAGCCACCTGACCCTTGCCAGGGTATTGATTTTGGGACACTaGCAGGCGATGTCTCGTGAG +
Preference number: 5 (lower is better)
Translates to: LPSISSLDQGSHLTLARVLILGH*QAMSRE
Trigger: CTCACGAGACATCGCCTGCAAGTGTCCCAAAATCAA...TACCCTGGCAAGGGTCAGGTGGCTTCCCTGGTCCAAGCTTGAGATTGAGGGCAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS TCA 90 bp CTTCTTGAGGGGCTTGATTTTGGGACACTTGCAGGCGATGTCTCGTaGGCGGATCCACAAACTCTGGTCACCACGGCGAATACGACTTGT +
Preference number: 5 (lower is better)
Translates to: LLEGLDFGTLAGDVS*ADPQTLVTTANTTC
Trigger: ACAAGTCGTATTCGCCGTGGTGACCAGAGTTTGTGGATCCGCTCACGAGACATCGCCTGCAAGTGTCCCAAAATCAAGCCCCTCAAGAAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp CTGTACAGCTGGATGTTATTTGCTACAGATGGTACCCAACAAACCATACTGGCTGACACGCGCACGTCCTaGCCGAAGGCCGCGTTGACA +
Preference number: 5 (lower is better)
Translates to: LYSWMLFATDGTQQTILADTRTS*PKAALT
Trigger: TGTCAACGCGGCCTTCGGCAAGGACGTGCGCGTGTC...AGCCAGTATGGTTTGTTGGGTACCATCTGTAGCAAATAACATCCAGCTGTACAG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp AAAAGGGCTGTTTCCAAGTTTCCAGCAAGGAAACTCTCTGGGAGGTTTTGGTTTGACACGCGCACGTCCTaGCCGAAGGCCGCGTTGACA +
Preference number: 5 (lower is better)
Translates to: KRAVSKFPARKLSGRFWFDTRTS*PKAALT
Trigger: TGTCAACGCGGCCTTCGGCAAGGACGTGCGCGTGTC...AAACCAAAACCTCCCAGAGAGTTTCCTTGCTGGAAACTTGGAAACAGCCCTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp CTGTACAGCTGGATGTTATTTGCTACAGATGGTACCCAACAAACCATACTGGCTGCGCGGTGCGGCCGGTaGTACATTTTGCGGCACTGC +
Preference number: 5 (lower is better)
Translates to: LYSWMLFATDGTQQTILAARCGR*YILRHC
Trigger: GCAGTGCCGCAAAATGTACAACCGGCCGCACCGCGC...AGCCAGTATGGTTTGTTGGGTACCATCTGTAGCAAATAACATCCAGCTGTACAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp AAAAGGGCTGTTTCCAAGTTTCCAGCAAGGAAACTCTCTGGGAGGTTTTGGTTTTGCAGCACCGGCGAGTaGTCGAAGTCGTGCGCCGAG +
Preference number: 5 (lower is better)
Translates to: KRAVSKFPARKLSGRFWFCSTGE*SKSCAE
Trigger: CTCGGCGCACGACTTCGACAACTCGCCGGTGCTGCA...AAACCAAAACCTCCCAGAGAGTTTCCTTGCTGGAAACTTGGAAACAGCCCTTTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp AGACATGCTGGTACAGAAATGAGACCCCTGCTGTACAGCTGGATGTTATTTGCTTCAGGGCCGGCCGTGTaGTGCCTACAGTCACACACC +
Preference number: 5 (lower is better)
Translates to: RHAGTEMRPLLYSWMLFASGPAV*CLQSHT
Trigger: GGTGTGTGACTGTAGGCACAACACGGCCGGCCCTGA...AGCAAATAACATCCAGCTGTACAGCAGGGGTCTCATTTCTGTACCAGCATGTCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GGTTTCTTAACCAAGGAGTCTATGTCCCTTTTCTGGGGAGCCAGCAGTGAGGGCCGACTTGTGCCCTGCTaGTACACGGAGATGATGTTC +
Preference number: 5 (lower is better)
Translates to: GFLTKESMSLFWGASSEGRLVPC*YTEMMF
Trigger: GAACATCATCTCCGTGTACAAGCAGGGCACAAGTCG...GCCCTCACTGCTGGCTCCCCAGAAAAGGGACATAGACTCCTTGGTTAAGAAACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GAGACTGGACTCCAGGGTTCAAGGGTGGAAGCTGGCCAGAGCATTAGACATGCTTTGATTTTGGGACACTaGCAGGCGATGTCTCGTGAG +
Preference number: 5 (lower is better)
Translates to: ETGLQGSRVEAGQSIRHALILGH*QAMSRE
Trigger: CTCACGAGACATCGCCTGCAAGTGTCCCAAAATCAA...AGCATGTCTAATGCTCTGGCCAGCTTCCACCCTTGAACCCTGGAGTCCAGTCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GCTGTTTCCAAGTTTCCAGCAAGGAAACTCTCTGGGAGGTTTTGGTTTGCAATGGGCGGGTGCGCTTTCTaGGGATCCGAAGAGTTGCAG +
Preference number: 5 (lower is better)
Translates to: AVSKFPARKLSGRFWFAMGGCAF*GSEELQ
Trigger: CTGCAACTCTTCGGATCCCAAGAAAGCGCACCCGCC...CATTGCAAACCAAAACCTCCCAGAGAGTTTCCTTGCTGGAAACTTGGAAACAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp AGACATGCTGGTACAGAAATGAGACCCCTGCTGTACAGCTGGATGTTATTTGCTCCTTTGGCACATCGGTaGCAGGTGATGCCCGTCACG +
Preference number: 5 (lower is better)
Translates to: RHAGTEMRPLLYSWMLFAPLAHR*QVMPVT
Trigger: CGTGACGGGCATCACCTGCAACCGATGTGCCAAAGG...AGCAAATAACATCCAGCTGTACAGCAGGGGTCTCATTTCTGTACCAGCATGTCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GCTGTTTCCAAGTTTCCAGCAAGGAAACTCTCTGGGAGGTTTTGGTTTGCAATGCACGGCGAATACGACTaGTGCCCTGCTTGTACACGG +
Preference number: 5 (lower is better)
Translates to: AVSKFPARKLSGRFWFAMHGEYD*CPACTR
Trigger: CCGTGTACAAGCAGGGCACAAGTCGTATTCGCCGTG...CATTGCAAACCAAAACCTCCCAGAGAGTTTCCTTGCTGGAAACTTGGAAACAGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp GGGGGAAGTCTAGTTAAGAGACTTCGCTGGATACCAGGTGAGACTGGACTCCAGTACTTCTTGAGGGGCTaGATTTTGGGACACTTGCAG +
Preference number: 5 (lower is better)
Translates to: GGSLVKRLRWIPGETGLQYFLRG*ILGHLQ
Trigger: CTGCAAGTGTCCCAAAATCAAGCCCCTCAAGAAGTA...CTGGAGTCCAGTCTCACCTGGTATCCAGCGAAGTCTCTTAACTAGACTTCCCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp AGACATGCTGGTACAGAAATGAGACCCCTGCTGTACAGCTGGATGTTATTTGCTGTCACCTCAAACTTCTaGCCGAGCGACAGAGTGAGC +
Preference number: 5 (lower is better)
Translates to: RHAGTEMRPLLYSWMLFAVTSNF*PSDRVS
Trigger: GCTCACTCTGTCGCTCGGCAAGAAGTTTGAGGTGAC...AGCAAATAACATCCAGCTGTACAGCAGGGGTCTCATTTCTGTACCAGCATGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp AAAGGAATAGACCAGACTGCCCAGGCTAGACCAAGACAGCTGGGAGCTAGAGTGAACAGCAAGTACTTCTaGAGGGGCTTGATTTTGGGA +
Preference number: 5 (lower is better)
Translates to: KGIDQTAQARPRQLGARVNSKYF*RGLILG
Trigger: TCCCAAAATCAAGCCCCTCAAGAAGTACTTGCTGTT...CACTCTAGCTCCCAGCTGTCTTGGTCTAGCCTGGGCAGTCTGGTCTATTCCTTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS-3UTR CAA 90 bp CTGTACAGCTGGATGTTATTTGCTACAGATGGTACCCAACAAACCATACTGGCTATGTTCATCTTCAGCTaGCCTTTGGAGGCCTTGCAA +
Preference number: 5 (lower is better)
Translates to: LYSWMLFATDGTQQTILAMFIFS*PLEALQ
Trigger: TTGCAAGGCCTCCAAAGGCAAGCTGAAGATGAACAT...AGCCAGTATGGTTTGTTGGGTACCATCTGTAGCAAATAACATCCAGCTGTACAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CCA 72 bp AGTTGCAGGCCACGCACTCGTTGGCCTCGCGGGCCGTaGCGCGCTGCCAGGGCCGGTCGTAGTGGAAGGGCT +
Preference number: 6 (lower is better)
Translates to: SCRPRTRWPRGP*RAARAGRSGRA
Trigger: AGCCCTTCCACTACGACCGGCCCTGGCAGCGCGCCACGGCCCGCGAGGCCAACGAGTGCGTGGCCTGCAACT
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CAA 72 bp TCGGTGGCCGTGACCCAGTCCTGCAGCACCGGCGAGTaGTCGAAGTCGTGCGCCGAGGGCCGCCCGTCCAGC +
Preference number: 6 (lower is better)
Translates to: SVAVTQSCSTGE*SKSCAEGRPSS
Trigger: GCTGGACGGGCGGCCCTCGGCGCACGACTTCGACAACTCGCCGGTGCTGCAGGACTGGGTCACGGCCACCGA
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS TCA 72 bp CGAAGTCGTGCGCCGAGGGCCGCCCGTCCAGCGTGCTaGAAGCGATCAGCCCGCCAGAGAGCGGGCGCATGT +
Preference number: 6 (lower is better)
Translates to: RSRAPRAARPAC*KRSARQRAGAC
Trigger: ACATGCGCCCGCTCTCTGGCGGGCTGATCGCTTTCAGCACGCTGGACGGGCGGCCCTCGGCGCACGACTTCG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS GCA 72 bp CGTCTCGGTCGCGCACGCAACGCGCCGCGTGGCCGTTaGACTTGCAGCGGCCGCCAACCTGCAGGTCAGACA +
Preference number: 6 (lower is better)
Translates to: RLGRARNAPRGR*TCSGRQPAGQT
Trigger: TGTCTGACCTGCAGGTTGGCGGCCGCTGCAAGTGCAACGGCCACGCGGCGCGTTGCGTGCGCGACCGAGACG
71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CCA 72 bp CCATTCTCATCCGAGCAAGGATCAGGCTGCGCCGCCTaGCCGGCGAACATGCTAAGCCCGGGCCCGCCGCGC +
Preference number: 6 (lower is better)
Translates to: PFSSEQGSGCAA*PANMLSPGPPR
Trigger: GCGCGGCGGGCCCGGGCTTAGCATGTTCGCCGGCCAGGCGGCGCAGCCTGATCCTTGCTCGGATGAGAATGG
71% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
ENSMUST00000135141.2
CDS CAA 72 bp GGGGGCCGGCCGCAGGTGCTGGACACGCGCACGTCCTaGCCGAAGGCCGCGTTGACAAAGTCCGGGATGCAG +
Preference number: 6 (lower is better)
Translates to: GGRPQVLDTRTS*PKAALTKSGMQ
Trigger: CTGCATCCCGGACTTTGTCAACGCGGCCTTCGGCAAGGACGTGCGCGTGTCCAGCACCTGCGGCCGGCCCCC
71% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
ENSMUST00000135141.2
CDS CAA 72 bp CGGTCGCGCACGCAACGCGCCGCGTGGCCGTTGCACTaGCAGCGGCCGCCAACCTGCAGGTCAGACACTGCA +
Preference number: 6 (lower is better)
Translates to: RSRTQRAAWPLH*QRPPTCRSDTA
Trigger: TGCAGTGTCTGACCTGCAGGTTGGCGGCCGCTGCAAGTGCAACGGCCACGCGGCGCGTTGCGTGCGCGACCG
71% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CAA 90 bp ACGCGGATGTCGGTGGCCGTGACCCAGTCCTGCAGCACCGGCGAGTaGTCGAAGTCGTGCGCCGAGGGCCGCCCGTCCAGCGTGCTGAAA +
Preference number: 6 (lower is better)
Translates to: TRMSVAVTQSCSTGE*SKSCAEGRPSSVLK
Trigger: TTTCAGCACGCTGGACGGGCGGCCCTCGGCGCACGACTTCGACAACTCGCCGGTGCTGCAGGACTGGGTCACGGCCACCGACATCCGCGT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS GCA 72 bp ACCCAGTCCTGCAGCACCGGCGAGTTGTCGAAGTCGTaGGCCGAGGGCCGCCCGTCCAGCGTGCTGAAAGCG +
Preference number: 6 (lower is better)
Translates to: TQSCSTGELSKS*AEGRPSSVLKA
Trigger: CGCTTTCAGCACGCTGGACGGGCGGCCCTCGGCGCACGACTTCGACAACTCGCCGGTGCTGCAGGACTGGGT
69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS GCA 72 bp GGTCGCGCACGCAACGCGCCGCGTGGCCGTTGCACTTaGAGCGGCCGCCAACCTGCAGGTCAGACACTGCAT +
Preference number: 6 (lower is better)
Translates to: GRARNAPRGRCT*SGRQPAGQTLH
Trigger: ATGCAGTGTCTGACCTGCAGGTTGGCGGCCGCTGCAAGTGCAACGGCCACGCGGCGCGTTGCGTGCGCGACC
69% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS GCA 72 bp CGCGGGTGTCCATTCTCATCCGAGCAAGGATCAGGCTaGGCCGCCTGGCCGGCGAACATGCTAAGCCCGGGC +
Preference number: 6 (lower is better)
Translates to: RGCPFSSEQGSG*AAWPANMLSPG
Trigger: GCCCGGGCTTAGCATGTTCGCCGGCCAGGCGGCGCAGCCTGATCCTTGCTCGGATGAGAATGGACACCCGCG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
ENSMUST00000135141.2
CDS GCA 72 bp GCGATCAGCCCGCCAGAGAGCGGGCGCATGTCGGTGTaGGAGTCGGTGCACACGGCCTCCTGCTCGTTCTGT +
Preference number: 6 (lower is better)
Translates to: AISPPESGRMSV*ESVHTASCSFC
Trigger: ACAGAACGAGCAGGAGGCCGTGTGCACCGACTCGCACACCGACATGCGCCCGCTCTCTGGCGGGCTGATCGC
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS GCA 72 bp CGCATGTCGGTGTGCGAGTCGGTGCACACGGCCTCCTaGTCGTTCTGTTTGGTGATAGGCGCGCGGTGCGGC +
Preference number: 6 (lower is better)
Translates to: RMSVCESVHTAS*SFCLVIGARCG
Trigger: GCCGCACCGCGCGCCTATCACCAAACAGAACGAGCAGGAGGCCGTGTGCACCGACTCGCACACCGACATGCG
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS GCA 72 bp AAAGCCACGCGGATGTCGGTGGCCGTGACCCAGTCCTaGAGCACCGGCGAGTTGTCGAAGTCGTGCGCCGAG +
Preference number: 6 (lower is better)
Translates to: KATRMSVAVTQS*STGELSKSCAE
Trigger: CTCGGCGCACGACTTCGACAACTCGCCGGTGCTGCAGGACTGGGTCACGGCCACCGACATCCGCGTGGCTTT
67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS GCA 72 bp AGCTCCGAGTCGTCTTCGTTCTCGTCGCCGAACGTGTaGAGGCGGCTGAAAGCCACGCGGATGTCGGTGGCC +
Preference number: 6 (lower is better)
Translates to: SSESSSFSSPNV*RRLKATRMSVA
Trigger: GGCCACCGACATCCGCGTGGCTTTCAGCCGCCTGCACACGTTCGGCGACGAGAACGAAGACGACTCGGAGCT
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS GCA 72 bp AGGCGGGCGGGTGCGCTTTCTTGGGATCCGAAGAGTTaGAGAGGTGACAGGAGCGCAGCCGCTCTTCACCAC +
Preference number: 6 (lower is better)
Translates to: RRAGALSWDPKS*RGDRSAAALHH
Trigger: GTGGTGAAGAGCGGCTGCGCTCCTGTCACCTCTGCAACTCTTCGGATCCCAAGAAAGCGCACCCGCCCGCCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
ENSMUST00000135141.2
CDS GCA 72 bp GCCGTGCCCATGTGTCCCGCCACTGGATCACCAGGCTaGTCTTGTCTGCCACGATGCCACTCTGGTCAGGTG +
Preference number: 6 (lower is better)
Translates to: AVPMCPATGSPG*SCLPRCHSGQV
Trigger: CACCTGACCAGAGTGGCATCGTGGCAGACAAGAGCAGCCTGGTGATCCAGTGGCGGGACACATGGGCACGGC
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS GCA 72 bp CTTCTTCTCCCGTTGCTGGAACTTGCGCAGCCGCCGTaGCCATGTGTCCCGCCACTGGATCACCAGGCTGCT +
Preference number: 6 (lower is better)
Translates to: LLLPLLELAQPP*PCVPPLDHQAA
Trigger: AGCAGCCTGGTGATCCAGTGGCGGGACACATGGGCACGGCGGCTGCGCAAGTTCCAGCAACGGGAGAAGAAG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CCA 72 bp AGAACTGGAAGGGCACCCACGTGCGCCCGTAGTCCATaGACTTGTAGATGGCCATGGACTCTGGCCGCGGCG +
Preference number: 6 (lower is better)
Translates to: RTGRAPTCARSP*TCRWPWTLAAA
Trigger: CGCCGCGGCCAGAGTCCATGGCCATCTACAAGTCCATGGACTACGGGCGCACGTGGGTGCCCTTCCAGTTCT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CCA 72 bp CGCGGTGCGGCCGGTTGTACATTTTGCGGCACTGCGTaGAATAGAACTGGAAGGGCACCCACGTGCGCCCGT +
Preference number: 6 (lower is better)
Translates to: RGAAGCTFCGTA*NRTGRAPTCAR
Trigger: ACGGGCGCACGTGGGTGCCCTTCCAGTTCTATTCCACGCAGTGCCGCAAAATGTACAACCGGCCGCACCGCG
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CCA 72 bp TTCCGGTTCCTCCACGCTGCTGGCTGCAGTGGTGGGTaGCGCCACAGGAATCTTGATGCAAGGGGCGATGGG +
Preference number: 6 (lower is better)
Translates to: FRFLHAAGCSGG*RHRNLDARGDG
Trigger: CCCATCGCCCCTTGCATCAAGATTCCTGTGGCGCCACCCACCACTGCAGCCAGCAGCGTGGAGGAACCGGAA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CAA 72 bp ATGTTGAATCTGCAGCGCCGAGCATGGAGGTTGCAGTaGCAGGCCACGCACTCGTTGGCCTCGCGGGCCGTG +
Preference number: 6 (lower is better)
Translates to: MLNLQRRAWRLQ*QATHSLASRAV
Trigger: CACGGCCCGCGAGGCCAACGAGTGCGTGGCCTGCAACTGCAACCTCCATGCTCGGCGCTGCAGATTCAACAT
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CAA 90 bp ATGTCGGTGTGCGAGTCGGTGCACACGGCCTCCTGCTCGTTCTGTTaGGTGATAGGCGCGCGGTGCGGCCGGTTGTACATTTTGCGGCAC +
Preference number: 6 (lower is better)
Translates to: MSVCESVHTASCSFC*VIGARCGRLYILRH
Trigger: GTGCCGCAAAATGTACAACCGGCCGCACCGCGCGCCTATCACCAAACAGAACGAGCAGGAGGCCGTGTGCACCGACTCGCACACCGACAT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CAA 90 bp AGCCGCCGTGCCCATGTGTCCCGCCACTGGATCACCAGGCTGCTCTaGTCTGCCACGATGCCACTCTGGTCAGGTGAGTCCTCGGCATTA +
Preference number: 6 (lower is better)
Translates to: SRRAHVSRHWITRLL*SATMPLWSGESSAL
Trigger: TAATGCCGAGGACTCACCTGACCAGAGTGGCATCGTGGCAGACAAGAGCAGCCTGGTGATCCAGTGGCGGGACACATGGGCACGGCGGCT
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS TCA 72 bp GGGTGCGCTTTCTTGGGATCCGAAGAGTTGCAGAGGTaGCAGGAGCGCAGCCGCTCTTCACCACGCTCGCTC +
Preference number: 6 (lower is better)
Translates to: GCAFLGSEELQR*QERSRSSPRSL
Trigger: GAGCGAGCGTGGTGAAGAGCGGCTGCGCTCCTGTCACCTCTGCAACTCTTCGGATCCCAAGAAAGCGCACCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
ENSMUST00000135141.2
CDS GCA 72 bp GGCTTGCAACGGTCGCATTCAGGGCCGGCCGTGTTGTaGCTACAGTCACACACCAGACTGTCGTCTCGGTCG +
Preference number: 6 (lower is better)
Translates to: GLQRSHSGPAVL*LQSHTRLSSRS
Trigger: CGACCGAGACGACAGTCTGGTGTGTGACTGTAGGCACAACACGGCCGGCCCTGAATGCGACCGTTGCAAGCC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS GCA 72 bp TCTTGCACTTGCCCTTCTTCTCCCGTTGCTGGAACTTaGGCAGCCGCCGTGCCCATGTGTCCCGCCACTGGA +
Preference number: 6 (lower is better)
Translates to: SCTCPSSPVAGT*AAAVPMCPATG
Trigger: TCCAGTGGCGGGACACATGGGCACGGCGGCTGCGCAAGTTCCAGCAACGGGAGAAGAAGGGCAAGTGCAAGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CCA 72 bp GCACCCACGTGCGCCCGTAGTCCATGGACTTGTAGATaGCCATGGACTCTGGCCGCGGCGAGCAGAATTGCA +
Preference number: 6 (lower is better)
Translates to: APTCARSPWTCR*PWTLAAASRIA
Trigger: TGCAATTCTGCTCGCCGCGGCCAGAGTCCATGGCCATCTACAAGTCCATGGACTACGGGCGCACGTGGGTGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CAA 72 bp TTCTCGGACTGCCAGCACGTCAGGTTGTGCGGGTTATaGAGGTCGGTGAGGAAGGCGGGCGGGTGCGCTTTC +
Preference number: 6 (lower is better)
Translates to: FSDCQHVRLCGL*RSVRKAGGCAF
Trigger: GAAAGCGCACCCGCCCGCCTTCCTCACCGACCTCAATAACCCGCACAACCTGACGTGCTGGCAGTCCGAGAA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
ENSMUST00000135141.2
CDS CAA 72 bp TGCGAGTCGGTGCACACGGCCTCCTGCTCGTTCTGTTaGGTGATAGGCGCGCGGTGCGGCCGGTTGTACATT +
Preference number: 6 (lower is better)
Translates to: CESVHTASCSFC*VIGARCGRLYI
Trigger: AATGTACAACCGGCCGCACCGCGCGCCTATCACCAAACAGAACGAGCAGGAGGCCGTGTGCACCGACTCGCA
62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CAA 72 bp GCCCATGTGTCCCGCCACTGGATCACCAGGCTGCTCTaGTCTGCCACGATGCCACTCTGGTCAGGTGAGTCC +
Preference number: 6 (lower is better)
Translates to: AHVSRHWITRLL*SATMPLWSGES
Trigger: GGACTCACCTGACCAGAGTGGCATCGTGGCAGACAAGAGCAGCCTGGTGATCCAGTGGCGGGACACATGGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS GCA 72 bp GCCTCCTGCTCGTTCTGTTTGGTGATAGGCGCGCGGTaGGGCCGGTTGTACATTTTGCGGCACTGCGTGGAA +
Preference number: 6 (lower is better)
Translates to: ASCSFCLVIGAR*GRLYILRHCVE
Trigger: TTCCACGCAGTGCCGCAAAATGTACAACCGGCCGCACCGCGCGCCTATCACCAAACAGAACGAGCAGGAGGC
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CCA 72 bp ACGTGCGCCCGTAGTCCATGGACTTGTAGATGGCCATaGACTCTGGCCGCGGCGAGCAGAATTGCAGGCTCA +
Preference number: 6 (lower is better)
Translates to: TCARSPWTCRWP*TLAAASRIAGS
Trigger: TGAGCCTGCAATTCTGCTCGCCGCGGCCAGAGTCCATGGCCATCTACAAGTCCATGGACTACGGGCGCACGT
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS GCA 72 bp GGCACTGCGTGGAATAGAACTGGAAGGGCACCCACGTaGGCCCGTAGTCCATGGACTTGTAGATGGCCATGG +
Preference number: 6 (lower is better)
Translates to: GTAWNRTGRAPT*ARSPWTCRWPW
Trigger: CCATGGCCATCTACAAGTCCATGGACTACGGGCGCACGTGGGTGCCCTTCCAGTTCTATTCCACGCAGTGCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS GCA 72 bp GCCACTGGATCACCAGGCTGCTCTTGTCTGCCACGATaGCACTCTGGTCAGGTGAGTCCTCGGCATTACCCA +
Preference number: 6 (lower is better)
Translates to: ATGSPGCSCLPR*HSGQVSPRHYP
Trigger: TGGGTAATGCCGAGGACTCACCTGACCAGAGTGGCATCGTGGCAGACAAGAGCAGCCTGGTGATCCAGTGGC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CCA 72 bp CCCGTAGTCCATGGACTTGTAGATGGCCATGGACTCTaGCCGCGGCGAGCAGAATTGCAGGCTCACATAGGT +
Preference number: 6 (lower is better)
Translates to: PVVHGLVDGHGL*PRRAELQAHIG
Trigger: ACCTATGTGAGCCTGCAATTCTGCTCGCCGCGGCCAGAGTCCATGGCCATCTACAAGTCCATGGACTACGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CAA 90 bp CATGGACTTGTAGATGGCCATGGACTCTGGCCGCGGCGAGCAGAATaGCAGGCTCACATAGGTCACCTCAAACTTCTTGCCGAGCGACAG +
Preference number: 6 (lower is better)
Translates to: HGLVDGHGLWPRRAE*QAHIGHLKLLAERQ
Trigger: CTGTCGCTCGGCAAGAAGTTTGAGGTGACCTATGTGAGCCTGCAATTCTGCTCGCCGCGGCCAGAGTCCATGGCCATCTACAAGTCCATG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CCA 72 bp TTGCAGGCGATGTCTCGTGAGCGGATCCACAAACTCTaGTCACCACGGCGAATACGACTTGTGCCCTGCTTG +
Preference number: 6 (lower is better)
Translates to: LQAMSRERIHKL*SPRRIRLVPCL
Trigger: CAAGCAGGGCACAAGTCGTATTCGCCGTGGTGACCAGAGTTTGTGGATCCGCTCACGAGACATCGCCTGCAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CCA 72 bp ATCACCAGGCTGCTCTTGTCTGCCACGATGCCACTCTaGTCAGGTGAGTCCTCGGCATTACCCAACAGCAAG +
Preference number: 6 (lower is better)
Translates to: ITRLLLSATMPL*SGESSALPNSK
Trigger: CTTGCTGTTGGGTAATGCCGAGGACTCACCTGACCAGAGTGGCATCGTGGCAGACAAGAGCAGCCTGGTGAT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CAA 72 bp GTAGATGGCCATGGACTCTGGCCGCGGCGAGCAGAATaGCAGGCTCACATAGGTCACCTCAAACTTCTTGCC +
Preference number: 6 (lower is better)
Translates to: VDGHGLWPRRAE*QAHIGHLKLLA
Trigger: GGCAAGAAGTTTGAGGTGACCTATGTGAGCCTGCAATTCTGCTCGCCGCGGCCAGAGTCCATGGCCATCTAC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS TCA 72 bp GGGCTTGATTTTGGGACACTTGCAGGCGATGTCTCGTaGGCGGATCCACAAACTCTGGTCACCACGGCGAAT +
Preference number: 6 (lower is better)
Translates to: GLDFGTLAGDVS*ADPQTLVTTAN
Trigger: ATTCGCCGTGGTGACCAGAGTTTGTGGATCCGCTCACGAGACATCGCCTGCAAGTGTCCCAAAATCAAGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CAA 90 bp GGTGAGTCCTCGGCATTACCCAACAGCAAGTACTTCTTGAGGGGCTaGATTTTGGGACACTTGCAGGCGATGTCTCGTGAGCGGATCCAC +
Preference number: 6 (lower is better)
Translates to: GESSALPNSKYFLRG*ILGHLQAMSRERIH
Trigger: GTGGATCCGCTCACGAGACATCGCCTGCAAGTGTCCCAAAATCAAGCCCCTCAAGAAGTACTTGCTGTTGGGTAATGCCGAGGACTCACC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS TCA 72 bp CATAGGTCACCTCAAACTTCTTGCCGAGCGACAGAGTaGGCGTCACGTTGTGCGGGAACTGCAGGTAGTTCT +
Preference number: 6 (lower is better)
Translates to: HRSPQTSCRATE*ASRCAGTAGSS
Trigger: AGAACTACCTGCAGTTCCCGCACAACGTGACGCTCACTCTGTCGCTCGGCAAGAAGTTTGAGGTGACCTATG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
ENSMUST00000135141.2
CDS TCA 72 bp GCTGCTCTTGTCTGCCACGATGCCACTCTGGTCAGGTaGGTCCTCGGCATTACCCAACAGCAAGTACTTCTT +
Preference number: 6 (lower is better)
Translates to: AALVCHDATLVR*VLGITQQQVLL
Trigger: AAGAAGTACTTGCTGTTGGGTAATGCCGAGGACTCACCTGACCAGAGTGGCATCGTGGCAGACAAGAGCAGC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CAA 72 bp CTCTGGTCACCACGGCGAATACGACTTGTGCCCTGCTaGTACACGGAGATGATGTTCACGGTGAACTTCCAC +
Preference number: 6 (lower is better)
Translates to: LWSPRRIRLVPC*YTEMMFTVNFH
Trigger: GTGGAAGTTCACCGTGAACATCATCTCCGTGTACAAGCAGGGCACAAGTCGTATTCGCCGTGGTGACCAGAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CAA 90 bp ATCCACAAACTCTGGTCACCACGGCGAATACGACTTGTGCCCTGCTaGTACACGGAGATGATGTTCACGGTGAACTTCCACCAGTCCCCT +
Preference number: 6 (lower is better)
Translates to: IHKLWSPRRIRLVPC*YTEMMFTVNFHQSP
Trigger: AGGGGACTGGTGGAAGTTCACCGTGAACATCATCTCCGTGTACAAGCAGGGCACAAGTCGTATTCGCCGTGGTGACCAGAGTTTGTGGAT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CAA 90 bp CTCTGGTCAGGTGAGTCCTCGGCATTACCCAACAGCAAGTACTTCTaGAGGGGCTTGATTTTGGGACACTTGCAGGCGATGTCTCGTGAG +
Preference number: 6 (lower is better)
Translates to: LWSGESSALPNSKYF*RGLILGHLQAMSRE
Trigger: CTCACGAGACATCGCCTGCAAGTGTCCCAAAATCAAGCCCCTCAAGAAGTACTTGCTGTTGGGTAATGCCGAGGACTCACCTGACCAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CAA 72 bp GGTGAGTCCTCGGCATTACCCAACAGCAAGTACTTCTaGAGGGGCTTGATTTTGGGACACTTGCAGGCGATG +
Preference number: 6 (lower is better)
Translates to: GESSALPNSKYF*RGLILGHLQAM
Trigger: CATCGCCTGCAAGTGTCCCAAAATCAAGCCCCTCAAGAAGTACTTGCTGTTGGGTAATGCCGAGGACTCACC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CAA 90 bp TCCTCGGCATTACCCAACAGCAAGTACTTCTTGAGGGGCTTGATTTaGGGACACTTGCAGGCGATGTCTCGTGAGCGGATCCACAAACTC +
Preference number: 6 (lower is better)
Translates to: SSALPNSKYFLRGLI*GHLQAMSRERIHKL
Trigger: GAGTTTGTGGATCCGCTCACGAGACATCGCCTGCAAGTGTCCCAAAATCAAGCCCCTCAAGAAGTACTTGCTGTTGGGTAATGCCGAGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CAA 90 bp TTACCCAACAGCAAGTACTTCTTGAGGGGCTTGATTTTGGGACACTaGCAGGCGATGTCTCGTGAGCGGATCCACAAACTCTGGTCACCA +
Preference number: 6 (lower is better)
Translates to: LPNSKYFLRGLILGH*QAMSRERIHKLWSP
Trigger: TGGTGACCAGAGTTTGTGGATCCGCTCACGAGACATCGCCTGCAAGTGTCCCAAAATCAAGCCCCTCAAGAAGTACTTGCTGTTGGGTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS GCA 72 bp AAACTCTGGTCACCACGGCGAATACGACTTGTGCCCTaGTTGTACACGGAGATGATGTTCACGGTGAACTTC +
Preference number: 6 (lower is better)
Translates to: KLWSPRRIRLVP*LYTEMMFTVNF
Trigger: GAAGTTCACCGTGAACATCATCTCCGTGTACAAGCAGGGCACAAGTCGTATTCGCCGTGGTGACCAGAGTTT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CAA 72 bp AGCAAGTACTTCTTGAGGGGCTTGATTTTGGGACACTaGCAGGCGATGTCTCGTGAGCGGATCCACAAACTC +
Preference number: 6 (lower is better)
Translates to: SKYFLRGLILGH*QAMSRERIHKL
Trigger: GAGTTTGTGGATCCGCTCACGAGACATCGCCTGCAAGTGTCCCAAAATCAAGCCCCTCAAGAAGTACTTGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CAA 72 bp TTACCCAACAGCAAGTACTTCTTGAGGGGCTTGATTTaGGGACACTTGCAGGCGATGTCTCGTGAGCGGATC +
Preference number: 6 (lower is better)
Translates to: LPNSKYFLRGLI*GHLQAMSRERI
Trigger: GATCCGCTCACGAGACATCGCCTGCAAGTGTCCCAAAATCAAGCCCCTCAAGAAGTACTTGCTGTTGGGTAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9
CDS CAA 72 bp TCGGCATTACCCAACAGCAAGTACTTCTTGAGGGGCTaGATTTTGGGACACTTGCAGGCGATGTCTCGTGAG +
Preference number: 6 (lower is better)
Translates to: SALPNSKYFLRG*ILGHLQAMSRE
Trigger: CTCACGAGACATCGCCTGCAAGTGTCCCAAAATCAAGCCCCTCAAGAAGTACTTGCTGTTGGGTAATGCCGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000021284.4
ENSMUST00000108674.9