Pregenerated sensors for NTHL1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000041429Ensembl transcript IDs: ENSMUST00000047611.4
Found 53 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| CDS-3UTR TCA 90 bp | CCCAAAGTTTACCACCCCGCCCCACAAAGGCACCTCACAGACACTAGCCAGAGGCCCAAACGGGCACTTTaGGGGGCTCAGCATCTTCGC | + |
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Preference number: 4 (lower is better) Translates to: PKVYHPAPQRHLTDTSQRPKRAL*GAQHLR Trigger: GCGAAGATGCTGAGCCCCTCAAAGTGCCCGTTTGGG...CCTCTGGCTAGTGTCTGTGAGGTGCCTTTGTGGGGCGGGGTGGTAAACTTTGGG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS-3UTR CCA 90 bp | CCCAAAGTTTACCACCCCGCCCCACAAAGGCACCTCACAGACACTAGCCAGAGGTGCTGCTGCCAGTTCTaGGGCTCCCAAACGGGCACT | + |
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Preference number: 4 (lower is better) Translates to: PKVYHPAPQRHLTDTSQRCCCQF*GSQTGT Trigger: AGTGCCCGTTTGGGAGCCCCAGAACTGGCAGCAGCA...CCTCTGGCTAGTGTCTGTGAGGTGCCTTTGTGGGGCGGGGTGGTAAACTTTGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS-3UTR CCA 90 bp | CCCAAAGTTTACCACCCCGCCCCACAAAGGCACCTCACAGACACTAGCCAGAGGTGCTCGGCGCCTAGCTaGTCCACAGGTGCATCCTTC | + |
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Preference number: 4 (lower is better) Translates to: PKVYHPAPQRHLTDTSQRCSAPS*STGASF Trigger: GAAGGATGCACCTGTGGACCAGCTAGGCGCCGAGCA...CCTCTGGCTAGTGTCTGTGAGGTGCCTTTGTGGGGCGGGGTGGTAAACTTTGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS-3UTR CCA 90 bp | CCCAAAGTTTACCACCCCGCCCCACAAAGGCACCTCACAGACACTAGCCAGAGGCTTGGGCCCAACACCTaGCAAGGCTACCAGCTCAGC | + |
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Preference number: 4 (lower is better) Translates to: PKVYHPAPQRHLTDTSQRLGPNT*QGYQLS Trigger: GCTGAGCTGGTAGCCTTGCCAGGTGTTGGGCCCAAG...CCTCTGGCTAGTGTCTGTGAGGTGCCTTTGTGGGGCGGGGTGGTAAACTTTGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS-3UTR TCA 90 bp | CCCAAAGTTTACCACCCCGCCCCACAAAGGCACCTCACAGACACTAGCCAGAGGCTACCAGTAGTCCGTTaGCCTCACTCCACAGCACCC | + |
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Preference number: 4 (lower is better) Translates to: PKVYHPAPQRHLTDTSQRLPVVR*PHSTAP Trigger: GGGTGCTGTGGAGTGAGGTCAACGGACTACTGGTAG...CCTCTGGCTAGTGTCTGTGAGGTGCCTTTGTGGGGCGGGGTGGTAAACTTTGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS-3UTR GCA 90 bp | CCCAAAGTTTACCACCCCGCCCCACAAAGGCACCTCACAGACACTAGCCAGAGGGCTTTTTCTTCCTTCTaGAGCAGCCTCTCGCGGGGC | + |
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Preference number: 4 (lower is better) Translates to: PKVYHPAPQRHLTDTSQRAFSSF*SSLSRG Trigger: GCCCCGCGAGAGGCTGCTGCAGAAGGAAGAAAAAGC...CCTCTGGCTAGTGTCTGTGAGGTGCCTTTGTGGGGCGGGGTGGTAAACTTTGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS-3UTR GCA 90 bp | CCCAAAGTTTACCACCCCGCCCCACAAAGGCACCTCACAGACACTAGCCAGAGGTTGGCCAGTTGCTGCTaGCAGTTCTGGGGCTCCCAA | + |
|
Preference number: 4 (lower is better) Translates to: PKVYHPAPQRHLTDTSQRLASCC*QFWGSQ Trigger: TTGGGAGCCCCAGAACTGGCAGCAGCAACTGGCCAA...CCTCTGGCTAGTGTCTGTGAGGTGCCTTTGTGGGGCGGGGTGGTAAACTTTGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS-3UTR GCA 90 bp | CCCAAAGTTTACCACCCCGCCCCACAAAGGCACCTCACAGACACTAGCCAGAGGCTTCGGGGAGGCACTTaGATCATAGCAGTGCTCGGC | + |
|
Preference number: 4 (lower is better) Translates to: PKVYHPAPQRHLTDTSQRLRGGT*IIAVLG Trigger: GCCGAGCACTGCTATGATGCAAGTGCCTCCCCGAAG...CCTCTGGCTAGTGTCTGTGAGGTGCCTTTGTGGGGCGGGGTGGTAAACTTTGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS-3UTR GCA 90 bp | CCCAAAGTTTACCACCCCGCCCCACAAAGGCACCTCACAGACACTAGCCAGAGGCATCGGTCTGCAGGATaGTCTCCACAGTCAAGCCCC | + |
|
Preference number: 4 (lower is better) Translates to: PKVYHPAPQRHLTDTSQRHRSAG*SPQSSP Trigger: GGGGCTTGACTGTGGAGAGCATCCTGCAGACCGATG...CCTCTGGCTAGTGTCTGTGAGGTGCCTTTGTGGGGCGGGGTGGTAAACTTTGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS-3UTR CCA 90 bp | CCCAAAGTTTACCACCCCGCCCCACAAAGGCACCTCACAGACACTAGCCAGAGGGCACCTGCTGTGACCTaGTCTTTGGTCTGGCTGGAG | + |
|
Preference number: 4 (lower is better) Translates to: PKVYHPAPQRHLTDTSQRAPAVT*SLVWLE Trigger: CTCCAGCCAGACCAAAGACCAGGTCACAGCAGGTGC...CCTCTGGCTAGTGTCTGTGAGGTGCCTTTGTGGGGCGGGGTGGTAAACTTTGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS-3UTR CCA 90 bp | CCCAAAGTTTACCACCCCGCCCCACAAAGGCACCTCACAGACACTAGCCAGAGGCCAAGTGTGCCATCTTaGGCCCAACACCTGGCAAGG | + |
|
Preference number: 4 (lower is better) Translates to: PKVYHPAPQRHLTDTSQRPSVPS*AQHLAR Trigger: CCTTGCCAGGTGTTGGGCCCAAGATGGCACACTTGG...CCTCTGGCTAGTGTCTGTGAGGTGCCTTTGTGGGGCGGGGTGGTAAACTTTGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS-3UTR CCA 90 bp | CCCAAAGTTTACCACCCCGCCCCACAAAGGCACCTCACAGACACTAGCCAGAGGCTGCTATGCCTGATATaGTCCCCCAGGCCACAGCCA | + |
|
Preference number: 4 (lower is better) Translates to: PKVYHPAPQRHLTDTSQRLLCLI*SPRPQP Trigger: TGGCTGTGGCCTGGGGGACCATATCAGGCATAGCAG...CCTCTGGCTAGTGTCTGTGAGGTGCCTTTGTGGGGCGGGGTGGTAAACTTTGGG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS-3UTR GCA 90 bp | CCCAAAGTTTACCACCCCGCCCCACAAAGGCACCTCACAGACACTAGCCAGAGGAGCCATAGCCAAGTGTaGCATCTTGGGCCCAACACC | + |
|
Preference number: 4 (lower is better) Translates to: PKVYHPAPQRHLTDTSQRSHSQV*HLGPNT Trigger: GGTGTTGGGCCCAAGATGGCACACTTGGCTATGGCT...CCTCTGGCTAGTGTCTGTGAGGTGCCTTTGTGGGGCGGGGTGGTAAACTTTGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS-3UTR CCA 90 bp | CCCAAAGTTTACCACCCCGCCCCACAAAGGCACCTCACAGACACTAGCCAGAGGGGTCTTTGGTCTGGCTaGAGAGCATCAGCGACAGGA | + |
|
Preference number: 4 (lower is better) Translates to: PKVYHPAPQRHLTDTSQRGLWSG*RASATG Trigger: TCCTGTCGCTGATGCTCTCCAGCCAGACCAAAGACC...CCTCTGGCTAGTGTCTGTGAGGTGCCTTTGTGGGGCGGGGTGGTAAACTTTGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS-3UTR CCA 90 bp | CCCAAAGTTTACCACCCCGCCCCACAAAGGCACCTCACAGACACTAGCCAGAGGACCTGGTCTTTGGTCTaGCTGGAGAGCATCAGCGAC | + |
|
Preference number: 4 (lower is better) Translates to: PKVYHPAPQRHLTDTSQRTWSLV*LESISD Trigger: GTCGCTGATGCTCTCCAGCCAGACCAAAGACCAGGT...CCTCTGGCTAGTGTCTGTGAGGTGCCTTTGTGGGGCGGGGTGGTAAACTTTGGG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS-3UTR GCA 90 bp | CCCAAAGTTTACCACCCCGCCCCACAAAGGCACCTCACAGACACTAGCCAGAGGCGGTTGGCTATTCTGTaGACATGTGTGTCCACTGCT | + |
|
Preference number: 4 (lower is better) Translates to: PKVYHPAPQRHLTDTSQRRLAIL*TCVSTA Trigger: AGCAGTGGACACACATGTGCACAGAATAGCCAACCG...CCTCTGGCTAGTGTCTGTGAGGTGCCTTTGTGGGGCGGGGTGGTAAACTTTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS-3UTR CCA 90 bp | CCCAAAGTTTACCACCCCGCCCCACAAAGGCACCTCACAGACACTAGCCAGAGGTGTCTCACGGGCCTGTaGCTTTTTCTTCCTTCTGCA | + |
|
Preference number: 4 (lower is better) Translates to: PKVYHPAPQRHLTDTSQRCLTGL*LFLPSA Trigger: TGCAGAAGGAAGAAAAAGCCACAGGCCCGTGAGACA...CCTCTGGCTAGTGTCTGTGAGGTGCCTTTGTGGGGCGGGGTGGTAAACTTTGGG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS-3UTR CCA 90 bp | CCCAAAGTTTACCACCCCGCCCCACAAAGGCACCTCACAGACACTAGCCAGAGGTCCACCTCAGTCGGTTaGCTATTCTGTGCACATGTG | + |
|
Preference number: 4 (lower is better) Translates to: PKVYHPAPQRHLTDTSQRSTSVG*LFCAHV Trigger: CACATGTGCACAGAATAGCCAACCGACTGAGGTGGA...CCTCTGGCTAGTGTCTGTGAGGTGCCTTTGTGGGGCGGGGTGGTAAACTTTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS-3UTR CCA 90 bp | CCCAAAGTTTACCACCCCGCCCCACAAAGGCACCTCACAGACACTAGCCAGAGGTCTTGGTCATCTTCTTaGTCCACCTCAGTCGGTTGG | + |
|
Preference number: 4 (lower is better) Translates to: PKVYHPAPQRHLTDTSQRSWSSS*STSVGW Trigger: CCAACCGACTGAGGTGGACCAAGAAGATGACCAAGA...CCTCTGGCTAGTGTCTGTGAGGTGCCTTTGTGGGGCGGGGTGGTAAACTTTGGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS-3UTR TCA 90 bp | CCCAAAGTTTACCACCCCGCCCCACAAAGGCACCTCACAGACACTAGCCAGAGGTGGCGGTTGTCTGCTTaGTGTATTTTACCTTGTTCC | + |
|
Preference number: 4 (lower is better) Translates to: PKVYHPAPQRHLTDTSQRWRLSA*CILPCS Trigger: GGAACAAGGTAAAATACATCAAGCAGACAACCGCCA...CCTCTGGCTAGTGTCTGTGAGGTGCCTTTGTGGGGCGGGGTGGTAAACTTTGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS-3UTR CCA 90 bp | CCCAAAGTTTACCACCCCGCCCCACAAAGGCACCTCACAGACACTAGCCAGAGGCTTACGTGTCTCTTCTaGGGTCTTGGTCATCTTCTT | + |
|
Preference number: 4 (lower is better) Translates to: PKVYHPAPQRHLTDTSQRLTCLF*GLGHLL Trigger: AAGAAGATGACCAAGACCCCAGAAGAGACACGTAAG...CCTCTGGCTAGTGTCTGTGAGGTGCCTTTGTGGGGCGGGGTGGTAAACTTTGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS-3UTR GCA 90 bp | CCCAAAGTTTACCACCCCGCCCCACAAAGGCACCTCACAGACACTAGCCAGAGGAGGATGGCGGTTGTCTaGTTGATGTATTTTACCTTG | + |
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Preference number: 4 (lower is better) Translates to: PKVYHPAPQRHLTDTSQRRMAVV*LMYFTL Trigger: CAAGGTAAAATACATCAAGCAGACAACCGCCATCCT...CCTCTGGCTAGTGTCTGTGAGGTGCCTTTGTGGGGCGGGGTGGTAAACTTTGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS GCA 90 bp | GCTCTCCACAGTCAAGCCCCGGGCCCGGAGCCGTTGCATAGCACCTaGTGTGACCTGGTCTTTGGTCTGGCTGGAGAGCATCAGCGACAG | + |
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Preference number: 5 (lower is better) Translates to: ALHSQAPGPEPLHST*CDLVFGLAGEHQRQ Trigger: CTGTCGCTGATGCTCTCCAGCCAGACCAAAGACCAGGTCACAGCAGGTGCTATGCAACGGCTCCGGGCCCGGGGCTTGACTGTGGAGAGC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS CCA 90 bp | GTCAAGCCCCGGGCCCGGAGCCGTTGCATAGCACCTGCTGTGACCTaGTCTTTGGTCTGGCTGGAGAGCATCAGCGACAGGAGTACCTGG | + |
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Preference number: 5 (lower is better) Translates to: VKPRARSRCIAPAVT*SLVWLESISDRSTW Trigger: CCAGGTACTCCTGTCGCTGATGCTCTCCAGCCAGACCAAAGACCAGGTCACAGCAGGTGCTATGCAACGGCTCCGGGCCCGGGGCTTGAC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS CCA 90 bp | CCAGGCCACAGCCATAGCCAAGTGTGCCATCTTGGGCCCAACACCTaGCAAGGCTACCAGCTCAGCCACGGAAGCAGGGATGTCCCCTTC | + |
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Preference number: 5 (lower is better) Translates to: PGHSHSQVCHLGPNT*QGYQLSHGSRDVPF Trigger: GAAGGGGACATCCCTGCTTCCGTGGCTGAGCTGGTAGCCTTGCCAGGTGTTGGGCCCAAGATGGCACACTTGGCTATGGCTGTGGCCTGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS TCA 90 bp | GCTCGGCGCCTAGCTGGTCCACAGGTGCATCCTTCTTGCTTCTCATaGTGCGGATGTTGGCCAGTTGCTGCTGCCAGTTCTGGGGCTCCC | + |
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Preference number: 5 (lower is better) Translates to: ARRLAGPQVHPSCFS*CGCWPVAAASSGAP Trigger: GGGAGCCCCAGAACTGGCAGCAGCAACTGGCCAACATCCGCATCATGAGAAGCAAGAAGGATGCACCTGTGGACCAGCTAGGCGCCGAGC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS CCA 90 bp | GCCCGGAGCCGTTGCATAGCACCTGCTGTGACCTGGTCTTTGGTCTaGCTGGAGAGCATCAGCGACAGGAGTACCTGGTACCTCCTCACC | + |
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Preference number: 5 (lower is better) Translates to: ARSRCIAPAVTWSLV*LESISDRSTWYLLT Trigger: GGTGAGGAGGTACCAGGTACTCCTGTCGCTGATGCTCTCCAGCCAGACCAAAGACCAGGTCACAGCAGGTGCTATGCAACGGCTCCGGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS-3UTR CAA 90 bp | CCCAAAGTTTACCACCCCGCCCCACAAAGGCACCTCACAGACACTAGCCAGAGGCCTTCGGGGAGGCACTaGCATCATAGCAGTGCTCGG | + |
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Preference number: 5 (lower is better) Translates to: PKVYHPAPQRHLTDTSQRPSGRH*HHSSAR Trigger: CCGAGCACTGCTATGATGCAAGTGCCTCCCCGAAGG...CCTCTGGCTAGTGTCTGTGAGGTGCCTTTGTGGGGCGGGGTGGTAAACTTTGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS-3UTR CAA 90 bp | CCCAAAGTTTACCACCCCGCCCCACAAAGGCACCTCACAGACACTAGCCAGAGGGCCAAGTGTGCCATCTaGGGCCCAACACCTGGCAAG | + |
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Preference number: 5 (lower is better) Translates to: PKVYHPAPQRHLTDTSQRAKCAI*GPTPGK Trigger: CTTGCCAGGTGTTGGGCCCAAGATGGCACACTTGGC...CCTCTGGCTAGTGTCTGTGAGGTGCCTTTGTGGGGCGGGGTGGTAAACTTTGGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS-3UTR CAA 90 bp | CCCAAAGTTTACCACCCCGCCCCACAAAGGCACCTCACAGACACTAGCCAGAGGTCCCAAACGGGCACTTaGAGGGGCTCAGCATCTTCG | + |
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Preference number: 5 (lower is better) Translates to: PKVYHPAPQRHLTDTSQRSQTGT*RGSASS Trigger: CGAAGATGCTGAGCCCCTCAAAGTGCCCGTTTGGGA...CCTCTGGCTAGTGTCTGTGAGGTGCCTTTGTGGGGCGGGGTGGTAAACTTTGGG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS CCA 90 bp | TTGCTTCTCATGATGCGGATGTTGGCCAGTTGCTGCTGCCAGTTCTaGGGCTCCCAAACGGGCACTTTGAGGGGCTCAGCATCTTCGCCT | + |
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Preference number: 5 (lower is better) Translates to: LLLMMRMLASCCCQF*GSQTGTLRGSASSP Trigger: AGGCGAAGATGCTGAGCCCCTCAAAGTGCCCGTTTGGGAGCCCCAGAACTGGCAGCAGCAACTGGCCAACATCCGCATCATGAGAAGCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS-3UTR CAA 90 bp | CCCAAAGTTTACCACCCCGCCCCACAAAGGCACCTCACAGACACTAGCCAGAGGGTCCACCTCAGTCGGTaGGCTATTCTGTGCACATGT | + |
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Preference number: 5 (lower is better) Translates to: PKVYHPAPQRHLTDTSQRVHLSR*AILCTC Trigger: ACATGTGCACAGAATAGCCAACCGACTGAGGTGGAC...CCTCTGGCTAGTGTCTGTGAGGTGCCTTTGTGGGGCGGGGTGGTAAACTTTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS-3UTR CAA 90 bp | CCCAAAGTTTACCACCCCGCCCCACAAAGGCACCTCACAGACACTAGCCAGAGGGTCTTGGTCATCTTCTaGGTCCACCTCAGTCGGTTG | + |
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Preference number: 5 (lower is better) Translates to: PKVYHPAPQRHLTDTSQRVLVIF*VHLSRL Trigger: CAACCGACTGAGGTGGACCAAGAAGATGACCAAGAC...CCTCTGGCTAGTGTCTGTGAGGTGCCTTTGTGGGGCGGGGTGGTAAACTTTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS-3UTR CAA 90 bp | CCCAAAGTTTACCACCCCGCCCCACAAAGGCACCTCACAGACACTAGCCAGAGGGTCTCTTCTGGGGTCTaGGTCATCTTCTTGGTCCAC | + |
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Preference number: 5 (lower is better) Translates to: PKVYHPAPQRHLTDTSQRVSSGV*VIFLVH Trigger: GTGGACCAAGAAGATGACCAAGACCCCAGAAGAGAC...CCTCTGGCTAGTGTCTGTGAGGTGCCTTTGTGGGGCGGGGTGGTAAACTTTGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS CCA 90 bp | ACCATTAGCCGCTTCATAGGCCACATGCGTTTTCTGTGTTCTCCGTaGATGTCTCACGGGCCTGTGGCTTTTTCTTCCTTCTGCAGCAGC | + |
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Preference number: 5 (lower is better) Translates to: TISRFIGHMRFLCSP*MSHGPVAFSSFCSS Trigger: GCTGCTGCAGAAGGAAGAAAAAGCCACAGGCCCGTGAGACATCCACGGAGAACACAGAAAACGCATGTGGCCTATGAAGCGGCTAATGGT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS-3UTR CAA 90 bp | CCCAAAGTTTACCACCCCGCCCCACAAAGGCACCTCACAGACACTAGCCAGAGGATGGCGGTTGTCTGCTaGATGTATTTTACCTTGTTC | + |
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Preference number: 5 (lower is better) Translates to: PKVYHPAPQRHLTDTSQRMAVVC*MYFTLF Trigger: GAACAAGGTAAAATACATCAAGCAGACAACCGCCAT...CCTCTGGCTAGTGTCTGTGAGGTGCCTTTGTGGGGCGGGGTGGTAAACTTTGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS CCA 72 bp | CGGGCCCGGAGCCGTTGCATAGCACCTGCTGTGACCTaGTCTTTGGTCTGGCTGGAGAGCATCAGCGACAGG | + |
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Preference number: 6 (lower is better) Translates to: RARSRCIAPAVT*SLVWLESISDR Trigger: CCTGTCGCTGATGCTCTCCAGCCAGACCAAAGACCAGGTCACAGCAGGTGCTATGCAACGGCTCCGGGCCCG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS CAA 72 bp | GTCCCCCAGGCCACAGCCATAGCCAAGTGTGCCATCTaGGGCCCAACACCTGGCAAGGCTACCAGCTCAGCC | + |
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Preference number: 6 (lower is better) Translates to: VPQATAIAKCAI*GPTPGKATSSA Trigger: GGCTGAGCTGGTAGCCTTGCCAGGTGTTGGGCCCAAGATGGCACACTTGGCTATGGCTGTGGCCTGGGGGAC 64% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS CAA 90 bp | CCCCGGGCCCGGAGCCGTTGCATAGCACCTGCTGTGACCTGGTCTTaGGTCTGGCTGGAGAGCATCAGCGACAGGAGTACCTGGTACCTC | + |
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Preference number: 6 (lower is better) Translates to: PRARSRCIAPAVTWS*VWLESISDRSTWYL Trigger: GAGGTACCAGGTACTCCTGTCGCTGATGCTCTCCAGCCAGACCAAAGACCAGGTCACAGCAGGTGCTATGCAACGGCTCCGGGCCCGGGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS GCA 72 bp | AGTCAAGCCCCGGGCCCGGAGCCGTTGCATAGCACCTaGTGTGACCTGGTCTTTGGTCTGGCTGGAGAGCAT | + |
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Preference number: 6 (lower is better) Translates to: SQAPGPEPLHST*CDLVFGLAGEH Trigger: ATGCTCTCCAGCCAGACCAAAGACCAGGTCACAGCAGGTGCTATGCAACGGCTCCGGGCCCGGGGCTTGACT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS GCA 72 bp | ATGCTCTCCACAGTCAAGCCCCGGGCCCGGAGCCGTTaGATAGCACCTGCTGTGACCTGGTCTTTGGTCTGG | + |
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Preference number: 6 (lower is better) Translates to: MLSTVKPRARSR*IAPAVTWSLVW Trigger: CCAGACCAAAGACCAGGTCACAGCAGGTGCTATGCAACGGCTCCGGGCCCGGGGCTTGACTGTGGAGAGCAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS CAA 72 bp | GATGCTCTCCACAGTCAAGCCCCGGGCCCGGAGCCGTaGCATAGCACCTGCTGTGACCTGGTCTTTGGTCTG | + |
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Preference number: 6 (lower is better) Translates to: DALHSQAPGPEP*HSTCCDLVFGL Trigger: CAGACCAAAGACCAGGTCACAGCAGGTGCTATGCAACGGCTCCGGGCCCGGGGCTTGACTGTGGAGAGCATC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS CAA 90 bp | CCTGATATGGTCCCCCAGGCCACAGCCATAGCCAAGTGTGCCATCTaGGGCCCAACACCTGGCAAGGCTACCAGCTCAGCCACGGAAGCA | + |
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Preference number: 6 (lower is better) Translates to: PDMVPQATAIAKCAI*GPTPGKATSSATEA Trigger: TGCTTCCGTGGCTGAGCTGGTAGCCTTGCCAGGTGTTGGGCCCAAGATGGCACACTTGGCTATGGCTGTGGCCTGGGGGACCATATCAGG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS CAA 72 bp | GGAGTACCTGGTACCTCCTCACCTTCGGGGAGGCACTaGCATCATAGCAGTGCTCGGCGCCTAGCTGGTCCA | + |
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Preference number: 6 (lower is better) Translates to: GVPGTSSPSGRH*HHSSARRLAGP Trigger: TGGACCAGCTAGGCGCCGAGCACTGCTATGATGCAAGTGCCTCCCCGAAGGTGAGGAGGTACCAGGTACTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS CAA 90 bp | TCAGCGACAGGAGTACCTGGTACCTCCTCACCTTCGGGGAGGCACTaGCATCATAGCAGTGCTCGGCGCCTAGCTGGTCCACAGGTGCAT | + |
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Preference number: 6 (lower is better) Translates to: SATGVPGTSSPSGRH*HHSSARRLAGPQVH Trigger: ATGCACCTGTGGACCAGCTAGGCGCCGAGCACTGCTATGATGCAAGTGCCTCCCCGAAGGTGAGGAGGTACCAGGTACTCCTGTCGCTGA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS CCA 72 bp | AGCCATAGCCAAGTGTGCCATCTTGGGCCCAACACCTaGCAAGGCTACCAGCTCAGCCACGGAAGCAGGGAT | + |
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Preference number: 6 (lower is better) Translates to: SHSQVCHLGPNT*QGYQLSHGSRD Trigger: ATCCCTGCTTCCGTGGCTGAGCTGGTAGCCTTGCCAGGTGTTGGGCCCAAGATGGCACACTTGGCTATGGCT 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS CAA 90 bp | TTGGCCAGTTGCTGCTGCCAGTTCTGGGGCTCCCAAACGGGCACTTaGAGGGGCTCAGCATCTTCGCCTTCCTCACCATTAGCCGCTTCA | + |
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Preference number: 6 (lower is better) Translates to: LASCCCQFWGSQTGT*RGSASSPSSPLAAS Trigger: TGAAGCGGCTAATGGTGAGGAAGGCGAAGATGCTGAGCCCCTCAAAGTGCCCGTTTGGGAGCCCCAGAACTGGCAGCAGCAACTGGCCAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS TCA 72 bp | TGGGCAGCAGGGCACAGGGCCTTGTTGAGGCAAGCCTaGCATCGAGGATGGACAGGAAGACAGATCTGTTGG | + |
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Preference number: 6 (lower is better) Translates to: WAAGHRALLRQA*HRGWTGRQICW Trigger: CCAACAGATCTGTCTTCCTGTCCATCCTCGATGTCAGGCTTGCCTCAACAAGGCCCTGTGCCCTGCTGCCCA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS CCA 72 bp | TTGGTCTGGCTGGAGAGCATCAGCGACAGGAGTACCTaGTACCTCCTCACCTTCGGGGAGGCACTTGCATCA | + |
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Preference number: 6 (lower is better) Translates to: LVWLESISDRST*YLLTFGEALAS Trigger: TGATGCAAGTGCCTCCCCGAAGGTGAGGAGGTACCAGGTACTCCTGTCGCTGATGCTCTCCAGCCAGACCAA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS GCA 72 bp | TTGCTTCTCATGATGCGGATGTTGGCCAGTTGCTGCTaGCAGTTCTGGGGCTCCCAAACGGGCACTTTGAGG | + |
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Preference number: 6 (lower is better) Translates to: LLLMMRMLASCC*QFWGSQTGTLR Trigger: CCTCAAAGTGCCCGTTTGGGAGCCCCAGAACTGGCAGCAGCAACTGGCCAACATCCGCATCATGAGAAGCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS GCA 72 bp | TTCTTGCTTCTCATGATGCGGATGTTGGCCAGTTGCTaGTGCCAGTTCTGGGGCTCCCAAACGGGCACTTTG | + |
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Preference number: 6 (lower is better) Translates to: FLLLMMRMLASC*CQFWGSQTGTL Trigger: CAAAGTGCCCGTTTGGGAGCCCCAGAACTGGCAGCAGCAACTGGCCAACATCCGCATCATGAGAAGCAAGAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS CAA 90 bp | CTGGGTAGCCACTCTTCCAAGTTCTTACGTGTCTCTTCTGGGGTCTaGGTCATCTTCTTGGTCCACCTCAGTCGGTTGGCTATTCTGTGC | + |
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Preference number: 6 (lower is better) Translates to: LGSHSSKFLRVSSGV*VIFLVHLSRLAILC Trigger: GCACAGAATAGCCAACCGACTGAGGTGGACCAAGAAGATGACCAAGACCCCAGAAGAGACACGTAAGAACTTGGAAGAGTGGCTACCCAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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| CDS CAA 72 bp | CACTCTTCCAAGTTCTTACGTGTCTCTTCTGGGGTCTaGGTCATCTTCTTGGTCCACCTCAGTCGGTTGGCT | + |
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Preference number: 6 (lower is better) Translates to: HSSKFLRVSSGV*VIFLVHLSRLA Trigger: AGCCAACCGACTGAGGTGGACCAAGAAGATGACCAAGACCCCAGAAGAGACACGTAAGAACTTGGAAGAGTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000047611.4 |
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