RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NSUN7 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000029206

Ensembl transcript IDs: ENSMUST00000031109.7, ENSMUST00000201100.4, ENSMUST00000202994.4

Found 184 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp AGGAGCAGTAGGATGCTTAAGGAAAAAGCTGGCCTCAGTTGGCTTTaGAGAGGTTTCAGCTACAGTAACTGCCTAGCTAAGGAGTGCCCG +
Preference number: 1 (lower is better)
Translates to: RSSRMLKEKAGLSWL*RGFSYSNCLAKECP
Trigger: CGGGCACTCCTTAGCTAGGCAGTTACTGTAGCTGAAACCTCTCCAAAGCCAACTGAGGCCAGCTTTTTCCTTAAGCATCCTACTGCTCCT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
3UTR CCA 90 bp TCTCTCAGGAGCAGTAGGATGCTTAAGGAAAAAGCTGGCCTCAGTTaGCTTTGGAGAGGTTTCAGCTACAGTAACTGCCTAGCTAAGGAG +
Preference number: 1 (lower is better)
Translates to: SLRSSRMLKEKAGLS*LWRGFSYSNCLAKE
Trigger: CTCCTTAGCTAGGCAGTTACTGTAGCTGAAACCTCTCCAAAGCCAACTGAGGCCAGCTTTTTCCTTAAGCATCCTACTGCTCCTGAGAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
3UTR-3UTR TCA 90 bp TTGGGATTTCCTGGGCTTCCTACCGTACTCAAAGCTCAGGCCACTAGAGAACCTATAGCACAGCACTGCTaGAAGCTTGGCTTAGCTCGG +
Preference number: 2 (lower is better)
Translates to: LGFPGLPTVLKAQATREPIAQHC*KLGLAR
Trigger: CCGAGCTAAGCCAAGCTTTCAGCAGTGCTGTGCTAT...AGGTTCTCTAGTGGCCTGAGCTTTGAGTACGGTAGGAAGCCCAGGAAATCCCAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
3UTR-3UTR CCA 90 bp CTTTGGAGAGGTTTCAGCTACAGTAACTGCCTAGCTAAGGAGTGCCCGCAGGTTGTCTTTCATTCTCTCTaGAGGTTACATTGCACTAGA +
Preference number: 2 (lower is better)
Translates to: LWRGFSYSNCLAKECPQVVFHSL*RLHCTR
Trigger: TCTAGTGCAATGTAACCTCCAGAGAGAATGAAAGAC...AACCTGCGGGCACTCCTTAGCTAGGCAGTTACTGTAGCTGAAACCTCTCCAAAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
3UTR-3UTR GCA 90 bp GAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCAAGAGTTCTCTTAGGTTaGTTTTATCCTGTTTCTCTT +
Preference number: 2 (lower is better)
Translates to: EAQAGKMPVKRQCAQPSSRVLLG*FYPVSL
Trigger: AAGAGAAACAGGATAAAAGCAACCTAAGAGAACTCT...TGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
3UTR TCA 72 bp TCCCTTCAGGTAAGACAGCCATGCTCCGCCCATACTTaGAACCTCCCAAGAGTGAGACAAGGTCTAACAGCT +
Preference number: 3 (lower is better)
Translates to: SLQVRQPCSAHT*NLPRVRQGLTA
Trigger: AGCTGTTAGACCTTGTCTCACTCTTGGGAGGTTTCAAGTATGGGCGGAGCATGGCTGTCTTACCTGAAGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
3UTR TCA 72 bp CGGGATCCAGGAGTCTCTCCAGAAACAGTTTCTGAATaGACATCTGGACTGTGCACATCTGACACTTGGGAT +
Preference number: 3 (lower is better)
Translates to: RDPGVSPETVSE*TSGLCTSDTWD
Trigger: ATCCCAAGTGTCAGATGTGCACAGTCCAGATGTTCATTCAGAAACTGTTTCTGGAGAGACTCCTGGATCCCG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
3UTR CCA 72 bp TTGAAACCTCCCAAGAGTGAGACAAGGTCTAACAGCTaGTCCAGTCTGCAACTGGACTTCCTAGAACAGGTT +
Preference number: 3 (lower is better)
Translates to: LKPPKSETRSNS*SSLQLDFLEQV
Trigger: AACCTGTTCTAGGAAGTCCAGTTGCAGACTGGACCAGCTGTTAGACCTTGTCTCACTCTTGGGAGGTTTCAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
3UTR CCA 72 bp AGCAGTAGGATGCTTAAGGAAAAAGCTGGCCTCAGTTaGCTTTGGAGAGGTTTCAGCTACAGTAACTGCCTA +
Preference number: 3 (lower is better)
Translates to: SSRMLKEKAGLS*LWRGFSYSNCL
Trigger: TAGGCAGTTACTGTAGCTGAAACCTCTCCAAAGCCAACTGAGGCCAGCTTTTTCCTTAAGCATCCTACTGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
3UTR GCA 72 bp TTTCTCAGAGTAAGAATCCCTAGGTGGAATCTTGCTTaGTGTCCTCTTTCCAACAATGTTTGGCCTAAACAG +
Preference number: 3 (lower is better)
Translates to: FLRVRIPRWNLA*CPLSNNVWPKQ
Trigger: CTGTTTAGGCCAAACATTGTTGGAAAGAGGACAGCAAGCAAGATTCCACCTAGGGATTCTTACTCTGAGAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
3UTR CCA 72 bp TGGAATCTTGCTTGCTGTCCTCTTTCCAACAATGTTTaGCCTAAACAGAAGGGAGGGATTATCATGCTTAGT +
Preference number: 3 (lower is better)
Translates to: WNLACCPLSNNV*PKQKGGIIMLS
Trigger: ACTAAGCATGATAATCCCTCCCTTCTGTTTAGGCCAAACATTGTTGGAAAGAGGACAGCAAGCAAGATTCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR TCA 90 bp CTACCAAGCCCCTCGGTCAGGTCTGCAAATCAACCTACTGGAAGGGGTCCTGGCAGTGGGTCCCCATGGTaGGGAGCCCTGGATGGCAGT +
Preference number: 4 (lower is better)
Translates to: LPSPSVRSANQPTGRGPGSGSPW*GALDGS
Trigger: ACTGCCATCCAGGGCTCCTCACCATGGGGACCCACT...GCCAGGACCCCTTCCAGTAGGTTGATTTGCAGACCTGACCGAGGGGCTTGGTAG
61% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR CCA 90 bp CTGGGCTTCCTACCGTACTCAAAGCTCAGGCCACTAGAGAACCTCCTGGCATGTCAAATGGTCGCGAAGTaGGTCCCCATGGTGAGGAGC +
Preference number: 4 (lower is better)
Translates to: LGFLPYSKLRPLENLLACQMVAK*VPMVRS
Trigger: GCTCCTCACCATGGGGACCCACTTCGCGACCATTTG...ACATGCCAGGAGGTTCTCTAGTGGCCTGAGCTTTGAGTACGGTAGGAAGCCCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR CCA 90 bp AGCACAGCACTGCTGAAAGCTTGGCTTAGCTCGGCCCCTCCAGGGTTACTCCTCGCCTTTCTACCGGCCTaGAAAAATTCCTCACCAGTG +
Preference number: 4 (lower is better)
Translates to: STALLKAWLSSAPPGLLLAFLPA*KNSSPV
Trigger: CACTGGTGAGGAATTTTTCCAGGCCGGTAGAAAGGC...GAGGAGTAACCCTGGAGGGGCCGAGCTAAGCCAAGCTTTCAGCAGTGCTGTGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
3UTR CAA 72 bp GCTAGAGCTGGAGCAGGCTGGAAAGAACAGCATCCTTaGTGTCTCGGGACTTTCTACCAAGCCCCTCGGTCA +
Preference number: 4 (lower is better)
Translates to: ARAGAGWKEQHP*CLGTFYQAPRS
Trigger: TGACCGAGGGGCTTGGTAGAAAGTCCCGAGACACAAAGGATGCTGTTCTTTCCAGCCTGCTCCAGCTCTAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR CCA 90 bp CTACCAAGCCCCTCGGTCAGGTCTGCAAATCAACCTACTGGAAGGGGTCCTGGCGGTAATAAAAATGGGTaGCTGGCATCTGAACCCTGG +
Preference number: 4 (lower is better)
Translates to: LPSPSVRSANQPTGRGPGGNKNG*LASEPW
Trigger: CCAGGGTTCAGATGCCAGCCACCCATTTTTATTACC...GCCAGGACCCCTTCCAGTAGGTTGATTTGCAGACCTGACCGAGGGGCTTGGTAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR TCA 90 bp GGGCTTCCTACCGTACTCAAAGCTCAGGCCACTAGAGAACCTCCTGGCATGTCCTCTTCTTGTCCCTTTTaGGCGTCTTCCCAACCTCAA +
Preference number: 4 (lower is better)
Translates to: GLPTVLKAQATREPPGMSSSCPF*ASSQPQ
Trigger: TTGAGGTTGGGAAGACGCTCAAAAGGGACAAGAAGA...GGACATGCCAGGAGGTTCTCTAGTGGCCTGAGCTTTGAGTACGGTAGGAAGCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR TCA 90 bp GCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCACTAAGTGGGTCCCCATGGTaGGGAGCCCTGGATGGCAGT +
Preference number: 4 (lower is better)
Translates to: AQAGKMPVKRQCAQPSSLSGSPW*GALDGS
Trigger: ACTGCCATCCAGGGCTCCTCACCATGGGGACCCACT...TAGTGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CCA 90 bp TCAAAGCTCAGGCCACTAGAGAACCTCCTGGCATGTCCTCTCTCAGGAGCAGTAATAAAAATGGGTGGCTaGCATCTGAACCCTGGGCCC +
Preference number: 4 (lower is better)
Translates to: SKLRPLENLLACPLSGAVIKMGG*HLNPGP
Trigger: GGGCCCAGGGTTCAGATGCCAGCCACCCATTTTTAT...TACTGCTCCTGAGAGAGGACATGCCAGGAGGTTCTCTAGTGGCCTGAGCTTTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR TCA 90 bp AAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCACGCTTGCTGGGCTTTCTaGCTTGGGAGGAAGTGCCGG +
Preference number: 4 (lower is better)
Translates to: KLKQVKCQLKDSVLSRLHACWAF*LGRKCR
Trigger: CCGGCACTTCCTCCCAAGTCAGAAAGCCCAGCAAGC...GTGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR TCA 90 bp TCCAGTCTGCAACTGGACTTCCTAGAACAGGTTAATAGCACAGCACTGCTGAAAGCTTGCTGGGCTTTCTaGCTTGGGAGGAAGTGCCGG +
Preference number: 4 (lower is better)
Translates to: SSLQLDFLEQVNSTALLKACWAF*LGRKCR
Trigger: CCGGCACTTCCTCCCAAGTCAGAAAGCCCAGCAAGC...TTTCAGCAGTGCTGTGCTATTAACCTGTTCTAGGAAGTCCAGTTGCAGACTGGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR CCA 90 bp GCCCCTCGGTCAGGTCTGCAAATCAACCTACTGGAAGGGGTCCTGGCTTCCCTTGACCACTTGTTAAGATaGACATATGGGCAACTGTGT +
Preference number: 4 (lower is better)
Translates to: APRSGLQINLLEGVLASLDHLLR*TYGQLC
Trigger: ACACAGTTGCCCATATGTCCATCTTAACAAGTGGTC...AAGGGAAGCCAGGACCCCTTCCAGTAGGTTGATTTGCAGACCTGACCGAGGGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR TCA 90 bp CCTGGCATGTCCTCTCTCAGGAGCAGTAGGATGCTTAAGGAAAAAGCTGGCCTCCTTTCTTCTGGATGTTaGGGATGTAAGATAGCGGGG +
Preference number: 4 (lower is better)
Translates to: PGMSSLRSSRMLKEKAGLLSSGC*GCKIAG
Trigger: CCCCGCTATCTTACATCCTCAACATCCAGAAGAAAG...GAGGCCAGCTTTTTCCTTAAGCATCCTACTGCTCCTGAGAGAGGACATGCCAGG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR CCA 90 bp TCAAAGCTCAGGCCACTAGAGAACCTCCTGGCATGTCCTCTCTCAGGAGCAGTAAAAGCCTTCACAGAGTaGACGGCAAGACTTCGAGAT +
Preference number: 4 (lower is better)
Translates to: SKLRPLENLLACPLSGAVKAFTE*TARLRD
Trigger: ATCTCGAAGTCTTGCCGTCCACTCTGTGAAGGCTTT...TACTGCTCCTGAGAGAGGACATGCCAGGAGGTTCTCTAGTGGCCTGAGCTTTGA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR CCA 90 bp GAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCACAAATGGTCGCGAAGTaGGTCCCCATGGTGAGGAGC +
Preference number: 4 (lower is better)
Translates to: EAQAGKMPVKRQCAQPSSQMVAK*VPMVRS
Trigger: GCTCCTCACCATGGGGACCCACTTCGCGACCATTTG...TGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR TCA 90 bp GGGCTTCCTACCGTACTCAAAGCTCAGGCCACTAGAGAACCTCCTGGCATGTCCAGGTCTGTTTTGAGATaGGCTGGGAAAATTAAGACA +
Preference number: 4 (lower is better)
Translates to: GLPTVLKAQATREPPGMSRSVLR*AGKIKT
Trigger: TGTCTTAATTTTCCCAGCTCATCTCAAAACAGACCT...GGACATGCCAGGAGGTTCTCTAGTGGCCTGAGCTTTGAGTACGGTAGGAAGCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR TCA 90 bp CTTTGGAGAGGTTTCAGCTACAGTAACTGCCTAGCTAAGGAGTGCCCGCAGGTTGGAGAACAGGAGGACTaGGTCTGTAAGGTTGCATTT +
Preference number: 4 (lower is better)
Translates to: LWRGFSYSNCLAKECPQVGEQED*VCKVAF
Trigger: AAATGCAACCTTACAGACTCAGTCCTCCTGTTCTCC...AACCTGCGGGCACTCCTTAGCTAGGCAGTTACTGTAGCTGAAACCTCTCCAAAG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR GCA 90 bp CTGGGCTTCCTACCGTACTCAAAGCTCAGGCCACTAGAGAACCTCCTGGCATGTTTTTCATTTGGACGTTaGTGGTGTCGTTACCATCCA +
Preference number: 4 (lower is better)
Translates to: LGFLPYSKLRPLENLLACFSFGR*WCRYHP
Trigger: TGGATGGTAACGACACCAGCAACGTCCAAATGAAAA...ACATGCCAGGAGGTTCTCTAGTGGCCTGAGCTTTGAGTACGGTAGGAAGCCCAG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR CCA 90 bp AGCACAGCACTGCTGAAAGCTTGGCTTAGCTCGGCCCCTCCAGGGTTACTCCTCTGGAATTTTCTGTCTTaGAAGTCATACAGCATCACA +
Preference number: 4 (lower is better)
Translates to: STALLKAWLSSAPPGLLLWNFLS*KSYSIT
Trigger: TGTGATGCTGTATGACTTCCAAGACAGAAAATTCCA...GAGGAGTAACCCTGGAGGGGCCGAGCTAAGCCAAGCTTTCAGCAGTGCTGTGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR CCA 90 bp CCAGCACCTTGTGTAACCGTATCTAAAACTGGACAAAGCCCAGCCACCCTGTCAGAAAGGATGCGGGGCTaGAATTTTCTGTCTTGGAAG +
Preference number: 4 (lower is better)
Translates to: PAPCVTVSKTGQSPATLSERMRG*NFLSWK
Trigger: CTTCCAAGACAGAAAATTCCAGCCCCGCATCCTTTC...TGACAGGGTGGCTGGGCTTTGTCCAGTTTTAGATACGGTTACACAAGGTGCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR CCA 90 bp GAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCACTTCCAGTAGACCTTTaGCTGCTGCCCTGGCCAGAA +
Preference number: 4 (lower is better)
Translates to: EAQAGKMPVKRQCAQPSSLPVDL*LLPWPE
Trigger: TTCTGGCCAGGGCAGCAGCCAAAGGTCTACTGGAAG...TGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR GCA 90 bp GGCCTCAGTTGGCTTTGGAGAGGTTTCAGCTACAGTAACTGCCTAGCTAAGGAGTTGAGACACAGTCTTTaGTGGGGCGGACATTTTTGT +
Preference number: 4 (lower is better)
Translates to: GLSWLWRGFSYSNCLAKELRHSL*WGGHFC
Trigger: ACAAAAATGTCCGCCCCAGCAAAGACTGTGTCTCAA...CTCCTTAGCTAGGCAGTTACTGTAGCTGAAACCTCTCCAAAGCCAACTGAGGCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR GCA 90 bp AGCACAGCACTGCTGAAAGCTTGGCTTAGCTCGGCCCCTCCAGGGTTACTCCTCTGTGCAATAGACAATTaGTTGAACTTTGGTAACTTC +
Preference number: 4 (lower is better)
Translates to: STALLKAWLSSAPPGLLLCAIDN*LNFGNF
Trigger: GAAGTTACCAAAGTTCAAGCAATTGTCTATTGCACA...GAGGAGTAACCCTGGAGGGGCCGAGCTAAGCCAAGCTTTCAGCAGTGCTGTGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR CCA 90 bp CCTACCGTACTCAAAGCTCAGGCCACTAGAGAACCTCCTGGCATGTCCTCTCTCGACTTCTTGAACTTCTaGTATGGTCTCTTCATTCTC +
Preference number: 4 (lower is better)
Translates to: PTVLKAQATREPPGMSSLDFLNF*YGLFIL
Trigger: GAGAATGAAGAGACCATACCAGAAGTTCAAGAAGTC...GAGAGAGGACATGCCAGGAGGTTCTCTAGTGGCCTGAGCTTTGAGTACGGTAGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR CCA 90 bp AAGAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCTTCCAGTAGACCTTTaGCTGCTGCCCTGGCCAGAA +
Preference number: 4 (lower is better)
Translates to: KKLKQVKCQLKDSVLSRLLPVDL*LLPWPE
Trigger: TTCTGGCCAGGGCAGCAGCCAAAGGTCTACTGGAAG...AAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CCA 90 bp CTCAGAGTAAGAATCCCTAGGTGGAATCTTGCTTGCTGTCCTCTTTCCAACAATCTTCCAGTAGACCTTTaGCTGCTGCCCTGGCCAGAA +
Preference number: 4 (lower is better)
Translates to: LRVRIPRWNLACCPLSNNLPVDL*LLPWPE
Trigger: TTCTGGCCAGGGCAGCAGCCAAAGGTCTACTGGAAG...ATTGTTGGAAAGAGGACAGCAAGCAAGATTCCACCTAGGGATTCTTACTCTGAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR CCA 90 bp TTTAAGAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCAAATGGTCGCGAAGTaGGTCCCCATGGTGAGGAGC +
Preference number: 4 (lower is better)
Translates to: FKKLKQVKCQLKDSVLSRQMVAK*VPMVRS
Trigger: GCTCCTCACCATGGGGACCCACTTCGCGACCATTTG...ACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTCTTAAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR TCA 90 bp CTGGGCTTCCTACCGTACTCAAAGCTCAGGCCACTAGAGAACCTCCTGGCATGTTGCGATTGTGGTACTTaGGAAGATATAGCTATCTAT +
Preference number: 4 (lower is better)
Translates to: LGFLPYSKLRPLENLLACCDCGT*EDIAIY
Trigger: ATAGATAGCTATATCTTCTCAAGTACCACAATCGCA...ACATGCCAGGAGGTTCTCTAGTGGCCTGAGCTTTGAGTACGGTAGGAAGCCCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR TCA 90 bp TGTCCTCTCTCAGGAGCAGTAGGATGCTTAAGGAAAAAGCTGGCCTCAGTTGGCGGAAAATTAAGACATTaGAGCAGTGCTGGTCTACTG +
Preference number: 4 (lower is better)
Translates to: CPLSGAVGCLRKKLASVGGKLRH*SSAGLL
Trigger: CAGTAGACCAGCACTGCTTCAATGTCTTAATTTTCC...GCCAACTGAGGCCAGCTTTTTCCTTAAGCATCCTACTGCTCCTGAGAGAGGACA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR CCA 90 bp GGCCCCTCCAGGGTTACTCCTCACCTGTCTTTCATTCTCTCTGGAGGTTACATTGTTAAGATGGACATATaGGCAACTGTGTACCACGAA +
Preference number: 4 (lower is better)
Translates to: GPSRVTPHLSFILSGGYIVKMDI*ATVYHE
Trigger: TTCGTGGTACACAGTTGCCCATATGTCCATCTTAAC...AATGTAACCTCCAGAGAGAATGAAAGACAGGTGAGGAGTAACCCTGGAGGGGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR CCA 90 bp GGCCTCAGTTGGCTTTGGAGAGGTTTCAGCTACAGTAACTGCCTAGCTAAGGAGTCGGAGATTTTCATTTaGACGTTGCTGGTGTCGTTA +
Preference number: 4 (lower is better)
Translates to: GLSWLWRGFSYSNCLAKESEIFI*TLLVSL
Trigger: TAACGACACCAGCAACGTCCAAATGAAAATCTCCGA...CTCCTTAGCTAGGCAGTTACTGTAGCTGAAACCTCTCCAAAGCCAACTGAGGCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR CCA 90 bp GCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCACTAGCCTTTCTACCGGCCTaGAAAAATTCCTCACCAGTG +
Preference number: 4 (lower is better)
Translates to: AQAGKMPVKRQCAQPSSLAFLPA*KNSSPV
Trigger: CACTGGTGAGGAATTTTTCCAGGCCGGTAGAAAGGC...TAGTGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CCA 90 bp AAGAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTATAAAAATGGGTGGCTaGCATCTGAACCCTGGGCCC +
Preference number: 4 (lower is better)
Translates to: KKLKQVKCQLKDSVLSRLIKMGG*HLNPGP
Trigger: GGGCCCAGGGTTCAGATGCCAGCCACCCATTTTTAT...AAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTCTT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR TCA 90 bp GCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCACTAACCACGAACCCGTGTTaGCCATTAGGACATCATCAT +
Preference number: 4 (lower is better)
Translates to: AQAGKMPVKRQCAQPSSLTTNPC*PLGHHH
Trigger: ATGATGATGTCCTAATGGTCAACACGGGTTCGTGGT...TAGTGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR TCA 90 bp TCCAGTCTGCAACTGGACTTCCTAGAACAGGTTAATAGCACAGCACTGCTGAAAACCACGAACCCGTGTTaGCCATTAGGACATCATCAT +
Preference number: 4 (lower is better)
Translates to: SSLQLDFLEQVNSTALLKTTNPC*PLGHHH
Trigger: ATGATGATGTCCTAATGGTCAACACGGGTTCGTGGT...TTTCAGCAGTGCTGTGCTATTAACCTGTTCTAGGAAGTCCAGTTGCAGACTGGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR TCA 90 bp GCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCACTAGGAGAACAGGAGGACTaGGTCTGTAAGGTTGCATTT +
Preference number: 4 (lower is better)
Translates to: AQAGKMPVKRQCAQPSSLGEQED*VCKVAF
Trigger: AAATGCAACCTTACAGACTCAGTCCTCCTGTTCTCC...TAGTGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR TCA 90 bp GAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCATCTTCTTGTCCCTTTTaGGCGTCTTCCCAACCTCAA +
Preference number: 4 (lower is better)
Translates to: EAQAGKMPVKRQCAQPSSSSCPF*ASSQPQ
Trigger: TTGAGGTTGGGAAGACGCTCAAAAGGGACAAGAAGA...TGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CCA 90 bp CCAGCACCTTGTGTAACCGTATCTAAAACTGGACAAAGCCCAGCCACCCTGTCATCCTCCATGTTTTCTTaGTCAAAAAGGTCCCTTTCA +
Preference number: 4 (lower is better)
Translates to: PAPCVTVSKTGQSPATLSSSMFS*SKRSLS
Trigger: TGAAAGGGACCTTTTTGACCAAGAAAACATGGAGGA...TGACAGGGTGGCTGGGCTTTGTCCAGTTTTAGATACGGTTACACAAGGTGCTGG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR CCA 90 bp GCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCACTAGAAAGGATGCGGGGCTaGAATTTTCTGTCTTGGAAG +
Preference number: 4 (lower is better)
Translates to: AQAGKMPVKRQCAQPSSLERMRG*NFLSWK
Trigger: CTTCCAAGACAGAAAATTCCAGCCCCGCATCCTTTC...TAGTGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CCA 90 bp AAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCACAAAGCCTTCACAGAGTaGACGGCAAGACTTCGAGAT +
Preference number: 4 (lower is better)
Translates to: KLKQVKCQLKDSVLSRLHKAFTE*TARLRD
Trigger: ATCTCGAAGTCTTGCCGTCCACTCTGTGAAGGCTTT...GTGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CCA 90 bp TTTAAGAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTATAAAAATGGGTGGCTaGCATCTGAACCCTGGGCCC +
Preference number: 4 (lower is better)
Translates to: FKKLKQVKCQLKDSVLSRIKMGG*HLNPGP
Trigger: GGGCCCAGGGTTCAGATGCCAGCCACCCATTTTTAT...ACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTCTTAAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CCA 90 bp AAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCACGGTAATAAAAATGGGTaGCTGGCATCTGAACCCTGG +
Preference number: 4 (lower is better)
Translates to: KLKQVKCQLKDSVLSRLHGNKNG*LASEPW
Trigger: CCAGGGTTCAGATGCCAGCCACCCATTTTTATTACC...GTGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CCA 90 bp GAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCAGGTAATAAAAATGGGTaGCTGGCATCTGAACCCTGG +
Preference number: 4 (lower is better)
Translates to: EAQAGKMPVKRQCAQPSSGNKNG*LASEPW
Trigger: CCAGGGTTCAGATGCCAGCCACCCATTTTTATTACC...TGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR TCA 90 bp AAGAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTTGGATCCGAATACCCTaGAAAATGTTCGCTGCCGTA +
Preference number: 4 (lower is better)
Translates to: KKLKQVKCQLKDSVLSRLWIRIP*KMFAAV
Trigger: TACGGCAGCGAACATTTTTCAGGGTATTCGGATCCA...AAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR TCA 90 bp TTTCTCAGAGTAAGAATCCCTAGGTGGAATCTTGCTTGCTGTCCTCTTTCCAACTGGATCCGAATACCCTaGAAAATGTTCGCTGCCGTA +
Preference number: 4 (lower is better)
Translates to: FLRVRIPRWNLACCPLSNWIRIP*KMFAAV
Trigger: TACGGCAGCGAACATTTTTCAGGGTATTCGGATCCA...GTTGGAAAGAGGACAGCAAGCAAGATTCCACCTAGGGATTCTTACTCTGAGAAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR TCA 90 bp TGTCCTCTCTCAGGAGCAGTAGGATGCTTAAGGAAAAAGCTGGCCTCAGTTGGCTTCCGTAATTTATTATaGCTTTGTCTGGCGACCTTT +
Preference number: 4 (lower is better)
Translates to: CPLSGAVGCLRKKLASVGFRNLL*LCLATF
Trigger: AAAGGTCGCCAGACAAAGTCATAATAAATTACGGAA...GCCAACTGAGGCCAGCTTTTTCCTTAAGCATCCTACTGCTCCTGAGAGAGGACA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR TCA 90 bp AAGAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTACCACGAACCCGTGTTaGCCATTAGGACATCATCAT +
Preference number: 4 (lower is better)
Translates to: KKLKQVKCQLKDSVLSRLTTNPC*PLGHHH
Trigger: ATGATGATGTCCTAATGGTCAACACGGGTTCGTGGT...AAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR TCA 90 bp AAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCACGAGGTAGCAACAGAATaGCCTTCACATTCTGTAACC +
Preference number: 4 (lower is better)
Translates to: KLKQVKCQLKDSVLSRLHEVATE*PSHSVT
Trigger: GGTTACAGAATGTGAAGGTCATTCTGTTGCTACCTC...GTGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR TCA 90 bp GGTTACTCCTCACCTGTCTTTCATTCTCTCTGGAGGTTACATTGCACTAGAGGAGAGGTAGCAACAGAATaGCCTTCACATTCTGTAACC +
Preference number: 4 (lower is better)
Translates to: GYSSPVFHSLWRLHCTRGEVATE*PSHSVT
Trigger: GGTTACAGAATGTGAAGGTCATTCTGTTGCTACCTC...TCCTCTAGTGCAATGTAACCTCCAGAGAGAATGAAAGACAGGTGAGGAGTAACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR TCA 90 bp AAGAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTGGAGAACAGGAGGACTaGGTCTGTAAGGTTGCATTT +
Preference number: 4 (lower is better)
Translates to: KKLKQVKCQLKDSVLSRLGEQED*VCKVAF
Trigger: AAATGCAACCTTACAGACTCAGTCCTCCTGTTCTCC...AAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR TCA 90 bp AAGAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTTCTTCTTGTCCCTTTTaGGCGTCTTCCCAACCTCAA +
Preference number: 4 (lower is better)
Translates to: KKLKQVKCQLKDSVLSRLSSCPF*ASSQPQ
Trigger: TTGAGGTTGGGAAGACGCTCAAAAGGGACAAGAAGA...AAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR GCA 90 bp GCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCACTAGCAGTGCTGGTCTACTaGATAGACTTTCTCATTGAC +
Preference number: 4 (lower is better)
Translates to: AQAGKMPVKRQCAQPSSLAVLVY*IDFLID
Trigger: GTCAATGAGAAAGTCTATGCAGTAGACCAGCACTGC...TAGTGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR GCA 90 bp GGTTACTCCTCACCTGTCTTTCATTCTCTCTGGAGGTTACATTGCACTAGAGGAGCAGTGCTGGTCTACTaGATAGACTTTCTCATTGAC +
Preference number: 4 (lower is better)
Translates to: GYSSPVFHSLWRLHCTRGAVLVY*IDFLID
Trigger: GTCAATGAGAAAGTCTATGCAGTAGACCAGCACTGC...TCCTCTAGTGCAATGTAACCTCCAGAGAGAATGAAAGACAGGTGAGGAGTAACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR GCA 90 bp GCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCACTATTGAGACACAGTCTTTaGTGGGGCGGACATTTTTGT +
Preference number: 4 (lower is better)
Translates to: AQAGKMPVKRQCAQPSSLLRHSL*WGGHFC
Trigger: ACAAAAATGTCCGCCCCAGCAAAGACTGTGTCTCAA...TAGTGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR TCA 90 bp GAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCATTAACCCCTGAGCTTTaGTATTCCAGTGCTTTCTCA +
Preference number: 4 (lower is better)
Translates to: EAQAGKMPVKRQCAQPSSLTPEL*YSSAFS
Trigger: TGAGAAAGCACTGGAATATCAAAGCTCAGGGGTTAA...TGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR TCA 90 bp GAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCATTGCATTTTAACCCCTaGGCTTTGATATTCCAGTGC +
Preference number: 4 (lower is better)
Translates to: EAQAGKMPVKRQCAQPSSLHFNP*ALIFQC
Trigger: GCACTGGAATATCAAAGCTCAGGGGTTAAAATGCAA...TGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR TCA 90 bp GCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCACTACCTAGAAGAGTCCTTTaGTCCAATGAAGCGGTAATA +
Preference number: 4 (lower is better)
Translates to: AQAGKMPVKRQCAQPSSLPRRVL*SNEAVI
Trigger: TATTACCGCTTCATTGGATCAAAGGACTCTTCTAGG...TAGTGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000031109.7
CDS-3UTR GCA 90 bp GCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCACTATTTTCATTTGGACGTTaGTGGTGTCGTTACCATCCA +
Preference number: 4 (lower is better)
Translates to: AQAGKMPVKRQCAQPSSLFSFGR*WCRYHP
Trigger: TGGATGGTAACGACACCAGCAACGTCCAAATGAAAA...TAGTGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CCA 90 bp TTTAAGAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTAAAGCCTTCACAGAGTaGACGGCAAGACTTCGAGAT +
Preference number: 4 (lower is better)
Translates to: FKKLKQVKCQLKDSVLSRKAFTE*TARLRD
Trigger: ATCTCGAAGTCTTGCCGTCCACTCTGTGAAGGCTTT...ACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTCTTAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CCA 90 bp GCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCACTATCGGAGATTTTCATTTaGACGTTGCTGGTGTCGTTA +
Preference number: 4 (lower is better)
Translates to: AQAGKMPVKRQCAQPSSLSEIFI*TLLVSL
Trigger: TAACGACACCAGCAACGTCCAAATGAAAATCTCCGA...TAGTGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CCA 90 bp TCAGCCGTCTTCACTAGAGTTCTCTTAGGTTGCTTTTATCCTGTTTCTCTTCTTGCCTTTCTACCGGCCTaGAAAAATTCCTCACCAGTG +
Preference number: 4 (lower is better)
Translates to: SAVFTRVLLGCFYPVSLLAFLPA*KNSSPV
Trigger: CACTGGTGAGGAATTTTTCCAGGCCGGTAGAAAGGC...AAGAAGAGAAACAGGATAAAAGCAACCTAAGAGAACTCTAGTGAAGACGGCTGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000201100.4
CDS-3UTR TCA 90 bp AAGAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTGGAAAATTAAGACATTaGAGCAGTGCTGGTCTACTG +
Preference number: 4 (lower is better)
Translates to: KKLKQVKCQLKDSVLSRLGKLRH*SSAGLL
Trigger: CAGTAGACCAGCACTGCTTCAATGTCTTAATTTTCC...AAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR TCA 90 bp AAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCACAGGTCTGTTTTGAGATaGGCTGGGAAAATTAAGACA +
Preference number: 4 (lower is better)
Translates to: KLKQVKCQLKDSVLSRLHRSVLR*AGKIKT
Trigger: TGTCTTAATTTTCCCAGCTCATCTCAAAACAGACCT...GTGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR TCA 90 bp AAGAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTTTAACCCCTGAGCTTTaGTATTCCAGTGCTTTCTCA +
Preference number: 4 (lower is better)
Translates to: KKLKQVKCQLKDSVLSRLLTPEL*YSSAFS
Trigger: TGAGAAAGCACTGGAATATCAAAGCTCAGGGGTTAA...AAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR TCA 90 bp CTCAGAGTAAGAATCCCTAGGTGGAATCTTGCTTGCTGTCCTCTTTCCAACAATTTAACCCCTGAGCTTTaGTATTCCAGTGCTTTCTCA +
Preference number: 4 (lower is better)
Translates to: LRVRIPRWNLACCPLSNNLTPEL*YSSAFS
Trigger: TGAGAAAGCACTGGAATATCAAAGCTCAGGGGTTAA...ATTGTTGGAAAGAGGACAGCAAGCAAGATTCCACCTAGGGATTCTTACTCTGAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR TCA 90 bp TTTCTCAGAGTAAGAATCCCTAGGTGGAATCTTGCTTGCTGTCCTCTTTCCAACTTGCATTTTAACCCCTaGGCTTTGATATTCCAGTGC +
Preference number: 4 (lower is better)
Translates to: FLRVRIPRWNLACCPLSNLHFNP*ALIFQC
Trigger: GCACTGGAATATCAAAGCTCAGGGGTTAAAATGCAA...GTTGGAAAGAGGACAGCAAGCAAGATTCCACCTAGGGATTCTTACTCTGAGAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR GCA 90 bp AAGAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTTTTTCATTTGGACGTTaGTGGTGTCGTTACCATCCA +
Preference number: 4 (lower is better)
Translates to: KKLKQVKCQLKDSVLSRLFSFGR*WCRYHP
Trigger: TGGATGGTAACGACACCAGCAACGTCCAAATGAAAA...AAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTCTT
43% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CCA 90 bp TCAGCCGTCTTCACTAGAGTTCTCTTAGGTTGCTTTTATCCTGTTTCTCTTCTTGAAAGGATGCGGGGCTaGAATTTTCTGTCTTGGAAG +
Preference number: 4 (lower is better)
Translates to: SAVFTRVLLGCFYPVSLLERMRG*NFLSWK
Trigger: CTTCCAAGACAGAAAATTCCAGCCCCGCATCCTTTC...AAGAAGAGAAACAGGATAAAAGCAACCTAAGAGAACTCTAGTGAAGACGGCTGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000201100.4
CDS-3UTR CCA 90 bp GCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCACTACTTGAACTTCTGGTATaGTCTCTTCATTCTCGGAAA +
Preference number: 4 (lower is better)
Translates to: AQAGKMPVKRQCAQPSSLLELLV*SLHSRK
Trigger: TTTCCGAGAATGAAGAGACCATACCAGAAGTTCAAG...TAGTGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CCA 90 bp GCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCACTAGACTTCTTGAACTTCTaGTATGGTCTCTTCATTCTC +
Preference number: 4 (lower is better)
Translates to: AQAGKMPVKRQCAQPSSLDFLNF*YGLFIL
Trigger: GAGAATGAAGAGACCATACCAGAAGTTCAAGAAGTC...TAGTGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CCA 90 bp AAGAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTGTTAAGATGGACATATaGGCAACTGTGTACCACGAA +
Preference number: 4 (lower is better)
Translates to: KKLKQVKCQLKDSVLSRLVKMDI*ATVYHE
Trigger: TTCGTGGTACACAGTTGCCCATATGTCCATCTTAAC...AAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTCTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR TCA 90 bp GAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCATGCGATTGTGGTACTTaGGAAGATATAGCTATCTAT +
Preference number: 4 (lower is better)
Translates to: EAQAGKMPVKRQCAQPSSCDCGT*EDIAIY
Trigger: ATAGATAGCTATATCTTCTCAAGTACCACAATCGCA...TGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR TCA 90 bp TTTAAGAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTTTGCATTTTAACCCCTaGGCTTTGATATTCCAGTGC +
Preference number: 4 (lower is better)
Translates to: FKKLKQVKCQLKDSVLSRLHFNP*ALIFQC
Trigger: GCACTGGAATATCAAAGCTCAGGGGTTAAAATGCAA...ACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTCTTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CCA 90 bp AAGAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTTCCTCCATGTTTTCTTaGTCAAAAAGGTCCCTTTCA +
Preference number: 4 (lower is better)
Translates to: KKLKQVKCQLKDSVLSRLSSMFS*SKRSLS
Trigger: TGAAAGGGACCTTTTTGACCAAGAAAACATGGAGGA...AAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CCA 90 bp AAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCACTGGAATTTTCTGTCTTaGAAGTCATACAGCATCACA +
Preference number: 4 (lower is better)
Translates to: KLKQVKCQLKDSVLSRLHWNFLS*KSYSIT
Trigger: TGTGATGCTGTATGACTTCCAAGACAGAAAATTCCA...GTGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CCA 90 bp GAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCATGGAATTTTCTGTCTTaGAAGTCATACAGCATCACA +
Preference number: 4 (lower is better)
Translates to: EAQAGKMPVKRQCAQPSSWNFLS*KSYSIT
Trigger: TGTGATGCTGTATGACTTCCAAGACAGAAAATTCCA...TGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CCA 90 bp CTCAGAGTAAGAATCCCTAGGTGGAATCTTGCTTGCTGTCCTCTTTCCAACAATCTTGAACTTCTGGTATaGTCTCTTCATTCTCGGAAA +
Preference number: 4 (lower is better)
Translates to: LRVRIPRWNLACCPLSNNLELLV*SLHSRK
Trigger: TTTCCGAGAATGAAGAGACCATACCAGAAGTTCAAG...ATTGTTGGAAAGAGGACAGCAAGCAAGATTCCACCTAGGGATTCTTACTCTGAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR CCA 90 bp AAGAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTGACTTCTTGAACTTCTaGTATGGTCTCTTCATTCTC +
Preference number: 4 (lower is better)
Translates to: KKLKQVKCQLKDSVLSRLDFLNF*YGLFIL
Trigger: GAGAATGAAGAGACCATACCAGAAGTTCAAGAAGTC...AAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTCTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CCA 90 bp TTTAAGAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTGACCACTTGTTAAGATaGACATATGGGCAACTGTGT +
Preference number: 4 (lower is better)
Translates to: FKKLKQVKCQLKDSVLSRDHLLR*TYGQLC
Trigger: ACACAGTTGCCCATATGTCCATCTTAACAAGTGGTC...ACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTCTTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR TCA 90 bp AAGAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTTGCGATTGTGGTACTTaGGAAGATATAGCTATCTAT +
Preference number: 4 (lower is better)
Translates to: KKLKQVKCQLKDSVLSRLCDCGT*EDIAIY
Trigger: ATAGATAGCTATATCTTCTCAAGTACCACAATCGCA...AAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CCA 90 bp AAGAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTTTTCCTAACTGTCTCTaGCAGAATATGGTAAATCGA +
Preference number: 4 (lower is better)
Translates to: KKLKQVKCQLKDSVLSRLFPNCL*QNMVNR
Trigger: TCGATTTACCATATTCTGCCAGAGACAGTTAGGAAA...AAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTCTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CCA 90 bp TCAGCCGTCTTCACTAGAGTTCTCTTAGGTTGCTTTTATCCTGTTTCTCTTCTTGACCACTTGTTAAGATaGACATATGGGCAACTGTGT +
Preference number: 4 (lower is better)
Translates to: SAVFTRVLLGCFYPVSLLDHLLR*TYGQLC
Trigger: ACACAGTTGCCCATATGTCCATCTTAACAAGTGGTC...AAGAAGAGAAACAGGATAAAAGCAACCTAAGAGAACTCTAGTGAAGACGGCTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201100.4
CDS-3UTR CCA 90 bp TCAGCCGTCTTCACTAGAGTTCTCTTAGGTTGCTTTTATCCTGTTTCTCTTCTTTCGGAGATTTTCATTTaGACGTTGCTGGTGTCGTTA +
Preference number: 4 (lower is better)
Translates to: SAVFTRVLLGCFYPVSLLSEIFI*TLLVSL
Trigger: TAACGACACCAGCAACGTCCAAATGAAAATCTCCGA...AAGAAGAGAAACAGGATAAAAGCAACCTAAGAGAACTCTAGTGAAGACGGCTGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201100.4
CDS-3UTR TCA 90 bp TTTAAGAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTTTCCGTAATTTATTATaGCTTTGTCTGGCGACCTTT +
Preference number: 4 (lower is better)
Translates to: FKKLKQVKCQLKDSVLSRFRNLL*LCLATF
Trigger: AAAGGTCGCCAGACAAAGTCATAATAAATTACGGAA...ACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTCTTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CCA 90 bp TCAGCCGTCTTCACTAGAGTTCTCTTAGGTTGCTTTTATCCTGTTTCTCTTCTTCTTGAACTTCTGGTATaGTCTCTTCATTCTCGGAAA +
Preference number: 4 (lower is better)
Translates to: SAVFTRVLLGCFYPVSLLLELLV*SLHSRK
Trigger: TTTCCGAGAATGAAGAGACCATACCAGAAGTTCAAG...AAGAAGAGAAACAGGATAAAAGCAACCTAAGAGAACTCTAGTGAAGACGGCTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201100.4
CDS-3UTR CCA 90 bp TTTAAGAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTTTTCCTAACTGTCTCTaGCAGAATATGGTAAATCGA +
Preference number: 4 (lower is better)
Translates to: FKKLKQVKCQLKDSVLSRFPNCL*QNMVNR
Trigger: TCGATTTACCATATTCTGCCAGAGACAGTTAGGAAA...ACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTCTTAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CCA 90 bp GTCCTCTTTCCAACAATGTTTGGCCTAAACAGAAGGGAGGGATTATCATGCTTATTTCCTAACTGTCTCTaGCAGAATATGGTAAATCGA +
Preference number: 4 (lower is better)
Translates to: VLFPTMFGLNRREGLSCLFPNCL*QNMVNR
Trigger: TCGATTTACCATATTCTGCCAGAGACAGTTAGGAAA...TAAGCATGATAATCCCTCCCTTCTGTTTAGGCCAAACATTGTTGGAAAGAGGAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR TCA 90 bp TCAGCCGTCTTCACTAGAGTTCTCTTAGGTTGCTTTTATCCTGTTTCTCTTCTTTTCCGTAATTTATTATaGCTTTGTCTGGCGACCTTT +
Preference number: 4 (lower is better)
Translates to: SAVFTRVLLGCFYPVSLLFRNLL*LCLATF
Trigger: AAAGGTCGCCAGACAAAGTCATAATAAATTACGGAA...AAGAAGAGAAACAGGATAAAAGCAACCTAAGAGAACTCTAGTGAAGACGGCTGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201100.4
CDS CCA 90 bp TCTTCCCAACCTCAACCCCTTCCAGTAGACCTTTGGCTGCTGCCCTaGCCAGAACGTCTTTCACTGACACTGTCTCAGATGGGTCCCGCT +
Preference number: 5 (lower is better)
Translates to: SSQPQPLPVDLWLLP*PERLSLTLSQMGPA
Trigger: AGCGGGACCCATCTGAGACAGTGTCAGTGAAAGACGTTCTGGCCAGGGCAGCAGCCAAAGGTCTACTGGAAGGGGTTGAGGTTGGGAAGA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS CCA 90 bp GACGTTGCTGGTGTCGTTACCATCCACTGCCAAATGGTCGCGAAGTaGGTCCCCATGGTGAGGAGCCCTGGATGGCAGTGCTTTCGATTT +
Preference number: 5 (lower is better)
Translates to: DVAGVVTIHCQMVAK*VPMVRSPGWQCFRF
Trigger: AAATCGAAAGCACTGCCATCCAGGGCTCCTCACCATGGGGACCCACTTCGCGACCATTTGGCAGTGGATGGTAACGACACCAGCAACGTC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS-3UTR CAA 90 bp GGTCTGCAAATCAACCTACTGGAAGGGGTCCTGGCTTCCCTTCAGGTAAGACAGCCTTCCAGTAGACCTTaGGCTGCTGCCCTGGCCAGA +
Preference number: 5 (lower is better)
Translates to: GLQINLLEGVLASLQVRQPSSRP*AAALAR
Trigger: TCTGGCCAGGGCAGCAGCCAAAGGTCTACTGGAAGG...CTGTCTTACCTGAAGGGAAGCCAGGACCCCTTCCAGTAGGTTGATTTGCAGACC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR CAA 90 bp AGCACAGCACTGCTGAAAGCTTGGCTTAGCTCGGCCCCTCCAGGGTTACTCCTCGTTGAAGAGTTTGTATaGGCGACTACATCCCCCGAC +
Preference number: 5 (lower is better)
Translates to: STALLKAWLSSAPPGLLLVEEFV*ATTSPD
Trigger: GTCGGGGGATGTAGTCGCCAATACAAACTCTTCAAC...GAGGAGTAACCCTGGAGGGGCCGAGCTAAGCCAAGCTTTCAGCAGTGCTGTGCT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR CAA 90 bp CTGGGCTTCCTACCGTACTCAAAGCTCAGGCCACTAGAGAACCTCCTGGCATGTGGGGTCGATAAAGGCTaGCTGGGCTTTCTGACTTGG +
Preference number: 5 (lower is better)
Translates to: LGFLPYSKLRPLENLLACGVDKG*LGFLTW
Trigger: CCAAGTCAGAAAGCCCAGCAAGCCTTTATCGACCCC...ACATGCCAGGAGGTTCTCTAGTGGCCTGAGCTTTGAGTACGGTAGGAAGCCCAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS CCA 90 bp CAAAGGAATCACTTTGCCTTCTGGCCGCGCTCTCACAAAGTTCGTTaGCCTTTCTACCGGCCTGGAAAAATTCCTCACCAGTGGGGTCGA +
Preference number: 5 (lower is better)
Translates to: QRNHFAFWPRSHKVR*PFYRPGKIPHQWGR
Trigger: TCGACCCCACTGGTGAGGAATTTTTCCAGGCCGGTAGAAAGGCCAACGAACTTTGTGAGAGCGCGGCCAGAAGGCAAAGTGATTCCTTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS-3UTR CAA 90 bp GGCCTCAGTTGGCTTTGGAGAGGTTTCAGCTACAGTAACTGCCTAGCTAAGGAGGAGAGGGCGTCGTGTTaGATTCGACATCTCGCCAAG +
Preference number: 5 (lower is better)
Translates to: GLSWLWRGFSYSNCLAKEERASC*IRHLAK
Trigger: CTTGGCGAGATGTCGAATCAAACACGACGCCCTCTC...CTCCTTAGCTAGGCAGTTACTGTAGCTGAAACCTCTCCAAAGCCAACTGAGGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR CAA 90 bp AGCACAGCACTGCTGAAAGCTTGGCTTAGCTCGGCCCCTCCAGGGTTACTCCTCCTGGGGCGGACATTTTaGTTGAAGTACTTATCTTGC +
Preference number: 5 (lower is better)
Translates to: STALLKAWLSSAPPGLLLLGRTF*LKYLSC
Trigger: GCAAGATAAGTACTTCAACAAAAATGTCCGCCCCAG...GAGGAGTAACCCTGGAGGGGCCGAGCTAAGCCAAGCTTTCAGCAGTGCTGTGCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR CAA 90 bp TCAAAGCTCAGGCCACTAGAGAACCTCCTGGCATGTCCTCTCTCAGGAGCAGTACTCTTCTTGTCCCTTTaGAGCGTCTTCCCAACCTCA +
Preference number: 5 (lower is better)
Translates to: SKLRPLENLLACPLSGAVLFLSL*SVFPTS
Trigger: TGAGGTTGGGAAGACGCTCAAAAGGGACAAGAAGAG...TACTGCTCCTGAGAGAGGACATGCCAGGAGGTTCTCTAGTGGCCTGAGCTTTGA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS CCA 90 bp AAAATGGGTGGCTGGCATCTGAACCCTGGGCCCCTGGGAACTCAATaGGAATATCACTGGCGGCAGAACGATTTCAATTGGTTTCAAAGG +
Preference number: 5 (lower is better)
Translates to: KMGGWHLNPGPLGTQ*EYHWRQNDFNWFQR
Trigger: CCTTTGAAACCAATTGAAATCGTTCTGCCGCCAGTGATATTCCCATTGAGTTCCCAGGGGCCCAGGGTTCAGATGCCAGCCACCCATTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS-3UTR CAA 90 bp AAGAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCCTTCCAGTAGACCTTaGGCTGCTGCCCTGGCCAGA +
Preference number: 5 (lower is better)
Translates to: KKLKQVKCQLKDSVLSRLPSSRP*AAALAR
Trigger: TCTGGCCAGGGCAGCAGCCAAAGGTCTACTGGAAGG...AAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTCTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CAA 90 bp GAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCACTCCAGGGAAGCGAGTaGGGAGATCTCCTCCATGTT +
Preference number: 5 (lower is better)
Translates to: EAQAGKMPVKRQCAQPSSLQGSE*GDLLHV
Trigger: AACATGGAGGAGATCTCCCAACTCGCTTCCCTGGAG...TGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CAA 90 bp CTACCAAGCCCCTCGGTCAGGTCTGCAAATCAACCTACTGGAAGGGGTCCTGGCGCAAGACTTCGAGATTaGTCCTGGAAAATAAGTTTA +
Preference number: 5 (lower is better)
Translates to: LPSPSVRSANQPTGRGPGARLRD*SWKISL
Trigger: TAAACTTATTTTCCAGGACAAATCTCGAAGTCTTGC...GCCAGGACCCCTTCCAGTAGGTTGATTTGCAGACCTGACCGAGGGGCTTGGTAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR CAA 90 bp AAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCACGGGGTCGATAAAGGCTaGCTGGGCTTTCTGACTTGG +
Preference number: 5 (lower is better)
Translates to: KLKQVKCQLKDSVLSRLHGVDKG*LGFLTW
Trigger: CCAAGTCAGAAAGCCCAGCAAGCCTTTATCGACCCC...GTGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS TCA 90 bp AGCGGGAGGAGGAGGGCTGCAGGGGTTCACTTCCGTAATTTATTATaGCTTTGTCTGGCGACCTTTGGATCCGAATACCCTGAAAAATGT +
Preference number: 5 (lower is better)
Translates to: SGRRRAAGVHFRNLL*LCLATFGSEYPEKC
Trigger: ACATTTTTCAGGGTATTCGGATCCAAAGGTCGCCAGACAAAGTCATAATAAATTACGGAAGTGAACCCCTGCAGCCCTCCTCCTCCCGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS CCA 90 bp GGAGGGCTGCAGGGGTTCACTTCCGTAATTTATTATGACTTTGTCTaGCGACCTTTGGATCCGAATACCCTGAAAAATGTTCGCTGCCGT +
Preference number: 5 (lower is better)
Translates to: GGLQGFTSVIYYDFV*RPLDPNTLKNVRCR
Trigger: ACGGCAGCGAACATTTTTCAGGGTATTCGGATCCAAAGGTCGCCAGACAAAGTCATAATAAATTACGGAAGTGAACCCCTGCAGCCCTCC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS-3UTR CAA 90 bp AAGAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCTCCAGGGAAGCGAGTaGGGAGATCTCCTCCATGTT +
Preference number: 5 (lower is better)
Translates to: KKLKQVKCQLKDSVLSRLLQGSE*GDLLHV
Trigger: AACATGGAGGAGATCTCCCAACTCGCTTCCCTGGAG...AAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CAA 90 bp CCTGGCATGTCCTCTCTCAGGAGCAGTAGGATGCTTAAGGAAAAAGCTGGCCTCCTGGAATTTTCTGTCTaGGAAGTCATACAGCATCAC +
Preference number: 5 (lower is better)
Translates to: PGMSSLRSSRMLKEKAGLLEFSV*EVIQHH
Trigger: GTGATGCTGTATGACTTCCAAGACAGAAAATTCCAG...GAGGCCAGCTTTTTCCTTAAGCATCCTACTGCTCCTGAGAGAGGACATGCCAGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR CAA 90 bp AAGAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTGAGAGGGCGTCGTGTTaGATTCGACATCTCGCCAAG +
Preference number: 5 (lower is better)
Translates to: KKLKQVKCQLKDSVLSRLERASC*IRHLAK
Trigger: CTTGGCGAGATGTCGAATCAAACACGACGCCCTCTC...AAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CAA 90 bp CTGGGCTTCCTACCGTACTCAAAGCTCAGGCCACTAGAGAACCTCCTGGCATGTGCAATAGACAATTGCTaGAACTTTGGTAACTTCGTG +
Preference number: 5 (lower is better)
Translates to: LGFLPYSKLRPLENLLACAIDNC*NFGNFV
Trigger: CACGAAGTTACCAAAGTTCAAGCAATTGTCTATTGC...ACATGCCAGGAGGTTCTCTAGTGGCCTGAGCTTTGAGTACGGTAGGAAGCCCAG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS CCA 90 bp CTGGGAACTCAATGGGAATATCACTGGCGGCAGAACGATTTCAATTaGTTTCAAAGGAATCACTTTGCCTTCTGGCCGCGCTCTCACAAA +
Preference number: 5 (lower is better)
Translates to: LGTQWEYHWRQNDFN*FQRNHFAFWPRSHK
Trigger: TTTGTGAGAGCGCGGCCAGAAGGCAAAGTGATTCCTTTGAAACCAATTGAAATCGTTCTGCCGCCAGTGATATTCCCATTGAGTTCCCAG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS-3UTR CAA 90 bp GAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCAGTTGAAGAGTTTGTATaGGCGACTACATCCCCCGAC +
Preference number: 5 (lower is better)
Translates to: EAQAGKMPVKRQCAQPSSVEEFV*ATTSPD
Trigger: GTCGGGGGATGTAGTCGCCAATACAAACTCTTCAAC...TGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CAA 90 bp AAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCACCTCTTCTTGTCCCTTTaGAGCGTCTTCCCAACCTCA +
Preference number: 5 (lower is better)
Translates to: KLKQVKCQLKDSVLSRLHLFLSL*SVFPTS
Trigger: TGAGGTTGGGAAGACGCTCAAAAGGGACAAGAAGAG...GTGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS TCA 90 bp GCAGCCAATTTTGTCTTAAAGCCGTTTAGAAGGTTCTCGACTTCTTaGACTTCTGGTATGGTCTCTTCATTCTCGGAAAGGATGCGGGGC +
Preference number: 5 (lower is better)
Translates to: AANFVLKPFRRFSTS*TSGMVSSFSERMRG
Trigger: GCCCCGCATCCTTTCCGAGAATGAAGAGACCATACCAGAAGTTCAAGAAGTCGAGAACCTTCTAAACGGCTTTAAGACAAAATTGGCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS-3UTR CAA 90 bp AAGAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTGTTGAAGAGTTTGTATaGGCGACTACATCCCCCGAC +
Preference number: 5 (lower is better)
Translates to: KKLKQVKCQLKDSVLSRLVEEFV*ATTSPD
Trigger: GTCGGGGGATGTAGTCGCCAATACAAACTCTTCAAC...AAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTCTT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CAA 90 bp GGTCTGCAAATCAACCTACTGGAAGGGGTCCTGGCTTCCCTTCAGGTAAGACAGTTGCGATTGTGGTACTaGAGAAGATATAGCTATCTA +
Preference number: 5 (lower is better)
Translates to: GLQINLLEGVLASLQVRQLRLWY*RRYSYL
Trigger: TAGATAGCTATATCTTCTCAAGTACCACAATCGCAA...CTGTCTTACCTGAAGGGAAGCCAGGACCCCTTCCAGTAGGTTGATTTGCAGACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR CAA 90 bp TTGGGATTTCCTGGGCTTCCTACCGTACTCAAAGCTCAGGCCACTAGAGAACCTGGGCGGACATTTTTGTaGAAGTACTTATCTTGCTTT +
Preference number: 5 (lower is better)
Translates to: LGFPGLPTVLKAQATREPGRTFL*KYLSCF
Trigger: AAAGCAAGATAAGTACTTCAACAAAAATGTCCGCCC...AGGTTCTCTAGTGGCCTGAGCTTTGAGTACGGTAGGAAGCCCAGGAAATCCCAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR CAA 90 bp TCAGCCGTCTTCACTAGAGTTCTCTTAGGTTGCTTTTATCCTGTTTCTCTTCTTGGGGTCGATAAAGGCTaGCTGGGCTTTCTGACTTGG +
Preference number: 5 (lower is better)
Translates to: SAVFTRVLLGCFYPVSLLGVDKG*LGFLTW
Trigger: CCAAGTCAGAAAGCCCAGCAAGCCTTTATCGACCCC...AAGAAGAGAAACAGGATAAAAGCAACCTAAGAGAACTCTAGTGAAGACGGCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000201100.4
CDS GCA 90 bp CGACTTCTTGAACTTCTGGTATGGTCTCTTCATTCTCGGAAAGGATaGGGGGCTGGAATTTTCTGTCTTGGAAGTCATACAGCATCACAA +
Preference number: 5 (lower is better)
Translates to: RLLELLVWSLHSRKG*GAGIFCLGSHTASQ
Trigger: TTGTGATGCTGTATGACTTCCAAGACAGAAAATTCCAGCCCCGCATCCTTTCCGAGAATGAAGAGACCATACCAGAAGTTCAAGAAGTCG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS-3UTR CAA 90 bp GAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCACTCCTCCATGTTTTCTaGGTCAAAAAGGTCCCTTTC +
Preference number: 5 (lower is better)
Translates to: EAQAGKMPVKRQCAQPSSLLHVF*VKKVPF
Trigger: GAAAGGGACCTTTTTGACCAAGAAAACATGGAGGAG...TGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CAA 90 bp GCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCACTACTCCTCCATGTTTTCTaGGTCAAAAAGGTCCCTTTC +
Preference number: 5 (lower is better)
Translates to: AQAGKMPVKRQCAQPSSLLLHVF*VKKVPF
Trigger: GAAAGGGACCTTTTTGACCAAGAAAACATGGAGGAG...TAGTGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CAA 90 bp GGTTACTCCTCACCTGTCTTTCATTCTCTCTGGAGGTTACATTGCACTAGAGGACTCCTCCATGTTTTCTaGGTCAAAAAGGTCCCTTTC +
Preference number: 5 (lower is better)
Translates to: GYSSPVFHSLWRLHCTRGLLHVF*VKKVPF
Trigger: GAAAGGGACCTTTTTGACCAAGAAAACATGGAGGAG...TCCTCTAGTGCAATGTAACCTCCAGAGAGAATGAAAGACAGGTGAGGAGTAACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR CAA 90 bp GGTTACTCCTCACCTGTCTTTCATTCTCTCTGGAGGTTACATTGCACTAGAGGAGTTGAAGTACTTATCTaGCTTTCTCGGTGCAAGAGC +
Preference number: 5 (lower is better)
Translates to: GYSSPVFHSLWRLHCTRGVEVLI*LSRCKS
Trigger: GCTCTTGCACCGAGAAAGCAAGATAAGTACTTCAAC...TCCTCTAGTGCAATGTAACCTCCAGAGAGAATGAAAGACAGGTGAGGAGTAACC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR CAA 90 bp AAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCACCTGGAATTTTCTGTCTaGGAAGTCATACAGCATCAC +
Preference number: 5 (lower is better)
Translates to: KLKQVKCQLKDSVLSRLHLEFSV*EVIQHH
Trigger: GTGATGCTGTATGACTTCCAAGACAGAAAATTCCAG...GTGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CAA 90 bp GAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCACTGGAATTTTCTGTCTaGGAAGTCATACAGCATCAC +
Preference number: 5 (lower is better)
Translates to: EAQAGKMPVKRQCAQPSSLEFSV*EVIQHH
Trigger: GTGATGCTGTATGACTTCCAAGACAGAAAATTCCAG...TGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CAA 90 bp GCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCACTAGGGAAAATTAAGACATaGAAGCAGTGCTGGTCTACT +
Preference number: 5 (lower is better)
Translates to: AQAGKMPVKRQCAQPSSLGKIKT*KQCWST
Trigger: AGTAGACCAGCACTGCTTCAATGTCTTAATTTTCCC...TAGTGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CAA 90 bp TCAGCCGTCTTCACTAGAGTTCTCTTAGGTTGCTTTTATCCTGTTTCTCTTCTTCTCTTCTTGTCCCTTTaGAGCGTCTTCCCAACCTCA +
Preference number: 5 (lower is better)
Translates to: SAVFTRVLLGCFYPVSLLLFLSL*SVFPTS
Trigger: TGAGGTTGGGAAGACGCTCAAAAGGGACAAGAAGAG...AAGAAGAGAAACAGGATAAAAGCAACCTAAGAGAACTCTAGTGAAGACGGCTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000201100.4
CDS-3UTR CAA 90 bp AAGAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTGTTGAAGTACTTATCTaGCTTTCTCGGTGCAAGAGC +
Preference number: 5 (lower is better)
Translates to: KKLKQVKCQLKDSVLSRLVEVLI*LSRCKS
Trigger: GCTCTTGCACCGAGAAAGCAAGATAAGTACTTCAAC...AAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTCTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS TCA 90 bp TTGTTAAGATGGACATATGGGCAACTGTGTACCACGAACCCGTGTTaGCCATTAGGACATCATCATCGATGTTTATCAAAGCCTTCACAG +
Preference number: 5 (lower is better)
Translates to: LLRWTYGQLCTTNPC*PLGHHHRCLSKPSQ
Trigger: CTGTGAAGGCTTTGATAAACATCGATGATGATGTCCTAATGGTCAACACGGGTTCGTGGTACACAGTTGCCCATATGTCCATCTTAACAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS-3UTR CAA 90 bp TTTAAGAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTGGGGCGGACATTTTaGTTGAAGTACTTATCTTGC +
Preference number: 5 (lower is better)
Translates to: FKKLKQVKCQLKDSVLSRLGRTF*LKYLSC
Trigger: GCAAGATAAGTACTTCAACAAAAATGTCCGCCCCAG...ACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTCTTAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS TCA 90 bp CTTTATCAGGAAATTATTGATCCTGTCCTCCCTAGAAGAGTCCTTTaGTCCAATGAAGCGGTAATAAAAATGGGTGGCTGGCATCTGAAC +
Preference number: 5 (lower is better)
Translates to: LYQEIIDPVLPRRVL*SNEAVIKMGGWHLN
Trigger: GTTCAGATGCCAGCCACCCATTTTTATTACCGCTTCATTGGATCAAAGGACTCTTCTAGGGAGGACAGGATCAATAATTTCCTGATAAAG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031109.7
CDS-3UTR CAA 90 bp GCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCACTATTGCGATTGTGGTACTaGAGAAGATATAGCTATCTA +
Preference number: 5 (lower is better)
Translates to: AQAGKMPVKRQCAQPSSLLRLWY*RRYSYL
Trigger: TAGATAGCTATATCTTCTCAAGTACCACAATCGCAA...TAGTGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CAA 90 bp TTTAAGAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTGGGAAAATTAAGACATaGAAGCAGTGCTGGTCTACT +
Preference number: 5 (lower is better)
Translates to: FKKLKQVKCQLKDSVLSRGKIKT*KQCWST
Trigger: AGTAGACCAGCACTGCTTCAATGTCTTAATTTTCCC...ACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTCTTAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CAA 90 bp TGTCCTCTTTCCAACAATGTTTGGCCTAAACAGAAGGGAGGGATTATCATGCTTGGGAAAATTAAGACATaGAAGCAGTGCTGGTCTACT +
Preference number: 5 (lower is better)
Translates to: CPLSNNVWPKQKGGIIMLGKIKT*KQCWST
Trigger: AGTAGACCAGCACTGCTTCAATGTCTTAATTTTCCC...AAGCATGATAATCCCTCCCTTCTGTTTAGGCCAAACATTGTTGGAAAGAGGACA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS-3UTR CAA 90 bp GCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTCACTAGCAAGACTTCGAGATTaGTCCTGGAAAATAAGTTTA +
Preference number: 5 (lower is better)
Translates to: AQAGKMPVKRQCAQPSSLARLRD*SWKISL
Trigger: TAAACTTATTTTCCAGGACAAATCTCGAAGTCTTGC...TAGTGAAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CAA 90 bp AAGAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTGGGCGGACATTTTTGTaGAAGTACTTATCTTGCTTT +
Preference number: 5 (lower is better)
Translates to: KKLKQVKCQLKDSVLSRLGRTFL*KYLSCF
Trigger: AAAGCAAGATAAGTACTTCAACAAAAATGTCCGCCC...AAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTCTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS-3UTR CAA 90 bp TCAGCCGTCTTCACTAGAGTTCTCTTAGGTTGCTTTTATCCTGTTTCTCTTCTTCTGGGGCGGACATTTTaGTTGAAGTACTTATCTTGC +
Preference number: 5 (lower is better)
Translates to: SAVFTRVLLGCFYPVSLLLGRTF*LKYLSC
Trigger: GCAAGATAAGTACTTCAACAAAAATGTCCGCCCCAG...AAGAAGAGAAACAGGATAAAAGCAACCTAAGAGAACTCTAGTGAAGACGGCTGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000201100.4
CDS-3UTR CAA 90 bp AAGAAGCTCAAGCAGGTAAAATGCCAGTTAAAAGACAGTGTGCTCAGCCGTCTTTTGCGATTGTGGTACTaGAGAAGATATAGCTATCTA +
Preference number: 5 (lower is better)
Translates to: KKLKQVKCQLKDSVLSRLLRLWY*RRYSYL
Trigger: TAGATAGCTATATCTTCTCAAGTACCACAATCGCAA...AAGACGGCTGAGCACACTGTCTTTTAACTGGCATTTTACCTGCTTGAGCTTCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS TCA 90 bp AAGGCTTATTTTACTGGTATTTATCCAAGCATAAAGAGGCAAAGTTaGGGCCCTTTGTTCCTGTTTCCTAACTGTCTCTGGCAGAATATG +
Preference number: 5 (lower is better)
Translates to: KAYFTGIYPSIKRQS*GPLFLFPNCLWQNM
Trigger: CATATTCTGCCAGAGACAGTTAGGAAACAGGAACAAAGGGCCTCAACTTTGCCTCTTTATGCTTGGATAAATACCAGTAAAATAAGCCTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS TCA 90 bp TCCTTCTCTTCTTGTTGTATTCCACATACAAAGATTTTCGAAGTGTaGCCACTTGTTAAGATGGACATATGGGCAACTGTGTACCACGAA +
Preference number: 5 (lower is better)
Translates to: SFSSCCIPHTKIFEV*PLVKMDIWATVYHE
Trigger: TTCGTGGTACACAGTTGCCCATATGTCCATCTTAACAAGTGGTCACACTTCGAAAATCTTTGTATGTGGAATACAACAAGAAGAGAAGGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS TCA 90 bp TATCTATTAATATACTTTCCAAAATATCTTGATACTTCAGGGTACTaGAAGCCAACTCATAGGACAAGCGCTGGAAAGATTCATCCTCGG +
Preference number: 5 (lower is better)
Translates to: YLLIYFPKYLDTSGY*KPTHRTSAGKIHPR
Trigger: CCGAGGATGAATCTTTCCAGCGCTTGTCCTATGAGTTGGCTTTCAGTACCCTGAAGTATCAAGATATTTTGGAAAGTATATTAATAGATA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS TCA 72 bp TCACCAGTGGGGTCGATAAAGGCTTGCTGGGCTTTCTaGCTTGGGAGGAAGTGCCGGCTTGAGACACAGTCT +
Preference number: 6 (lower is better)
Translates to: SPVGSIKACWAF*LGRKCRLETQS
Trigger: AGACTGTGTCTCAAGCCGGCACTTCCTCCCAAGTCAGAAAGCCCAGCAAGCCTTTATCGACCCCACTGGTGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS CAA 90 bp TCCCTTTTGAGCGTCTTCCCAACCTCAACCCCTTCCAGTAGACCTTaGGCTGCTGCCCTGGCCAGAACGTCTTTCACTGACACTGTCTCA +
Preference number: 6 (lower is better)
Translates to: SLLSVFPTSTPSSRP*AAALARTSFTDTVS
Trigger: TGAGACAGTGTCAGTGAAAGACGTTCTGGCCAGGGCAGCAGCCAAAGGTCTACTGGAAGGGGTTGAGGTTGGGAAGACGCTCAAAAGGGA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS CCA 72 bp CACTTTGCCTTCTGGCCGCGCTCTCACAAAGTTCGTTaGCCTTTCTACCGGCCTGGAAAAATTCCTCACCAG +
Preference number: 6 (lower is better)
Translates to: HFAFWPRSHKVR*PFYRPGKIPHQ
Trigger: CTGGTGAGGAATTTTTCCAGGCCGGTAGAAAGGCCAACGAACTTTGTGAGAGCGCGGCCAGAAGGCAAAGTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS CCA 72 bp AGCGGTAATAAAAATGGGTGGCTGGCATCTGAACCCTaGGCCCCTGGGAACTCAATGGGAATATCACTGGCG +
Preference number: 6 (lower is better)
Translates to: SGNKNGWLASEP*APGNSMGISLA
Trigger: CGCCAGTGATATTCCCATTGAGTTCCCAGGGGCCCAGGGTTCAGATGCCAGCCACCCATTTTTATTACCGCT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS CAA 72 bp CTGGAAAAATTCCTCACCAGTGGGGTCGATAAAGGCTaGCTGGGCTTTCTGACTTGGGAGGAAGTGCCGGCT +
Preference number: 6 (lower is better)
Translates to: LEKFLTSGVDKG*LGFLTWEEVPA
Trigger: AGCCGGCACTTCCTCCCAAGTCAGAAAGCCCAGCAAGCCTTTATCGACCCCACTGGTGAGGAATTTTTCCAG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS CAA 90 bp TCAAAGGAATCACTTTGCCTTCTGGCCGCGCTCTCACAAAGTTCGTaGGCCTTTCTACCGGCCTGGAAAAATTCCTCACCAGTGGGGTCG +
Preference number: 6 (lower is better)
Translates to: SKESLCLLAALSQSS*AFLPAWKNSSPVGS
Trigger: CGACCCCACTGGTGAGGAATTTTTCCAGGCCGGTAGAAAGGCCAACGAACTTTGTGAGAGCGCGGCCAGAAGGCAAAGTGATTCCTTTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS CAA 72 bp CGGAGTCTGGGTAGCTGGGTTTTTCTAGGACGACGGTaGAAGAGTTTGTATTGGCGACTACATCCCCCGACA +
Preference number: 6 (lower is better)
Translates to: RSLGSWVFLGRR*KSLYWRLHPPT
Trigger: TGTCGGGGGATGTAGTCGCCAATACAAACTCTTCAACCGTCGTCCTAGAAAAACCCAGCTACCCAGACTCCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS CAA 72 bp TCACTTTGCCTTCTGGCCGCGCTCTCACAAAGTTCGTaGGCCTTTCTACCGGCCTGGAAAAATTCCTCACCA +
Preference number: 6 (lower is better)
Translates to: SLCLLAALSQSS*AFLPAWKNSSP
Trigger: TGGTGAGGAATTTTTCCAGGCCGGTAGAAAGGCCAACGAACTTTGTGAGAGCGCGGCCAGAAGGCAAAGTGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS GCA 72 bp CGACCTTTGGATCCGAATACCCTGAAAAATGTTCGCTaGCGTAACGTACACGGAGTCTGGGTAGCTGGGTTT +
Preference number: 6 (lower is better)
Translates to: RPLDPNTLKNVR*RNVHGVWVAGF
Trigger: AAACCCAGCTACCCAGACTCCGTGTACGTTACGGCAGCGAACATTTTTCAGGGTATTCGGATCCAAAGGTCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS CAA 72 bp CAGGGAAGCGAGTTGGGAGATCTCCTCCATGTTTTCTaGGTCAAAAAGGTCCCTTTCACTCGTTGGGTCCAG +
Preference number: 6 (lower is better)
Translates to: QGSELGDLLHVF*VKKVPFTRWVQ
Trigger: CTGGACCCAACGAGTGAAAGGGACCTTTTTGACCAAGAAAACATGGAGGAGATCTCCCAACTCGCTTCCCTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS TCA 72 bp CTGGCAGAATATGGTAAATCGAGAGGGCGTCGTGTTTaGTTCGACATCTCGCCAAGGCTGCAGCCAATTTTG +
Preference number: 6 (lower is better)
Translates to: LAEYGKSRGRRV*FDISPRLQPIL
Trigger: CAAAATTGGCTGCAGCCTTGGCGAGATGTCGAATCAAACACGACGCCCTCTCGATTTACCATATTCTGCCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS CAA 90 bp ATCACTGGCGGCAGAACGATTTCAATTGGTTTCAAAGGAATCACTTaGCCTTCTGGCCGCGCTCTCACAAAGTTCGTTGGCCTTTCTACC +
Preference number: 6 (lower is better)
Translates to: ITGGRTISIGFKGIT*PSGRALTKFVGLST
Trigger: GGTAGAAAGGCCAACGAACTTTGTGAGAGCGCGGCCAGAAGGCAAAGTGATTCCTTTGAAACCAATTGAAATCGTTCTGCCGCCAGTGAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS TCA 72 bp AGGAGGGCTGCAGGGGTTCACTTCCGTAATTTATTATaGCTTTGTCTGGCGACCTTTGGATCCGAATACCCT +
Preference number: 6 (lower is better)
Translates to: RRAAGVHFRNLL*LCLATFGSEYP
Trigger: AGGGTATTCGGATCCAAAGGTCGCCAGACAAAGTCATAATAAATTACGGAAGTGAACCCCTGCAGCCCTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS CCA 72 bp CGTTTAGAAGGTTCTCGACTTCTTGAACTTCTGGTATaGTCTCTTCATTCTCGGAAAGGATGCGGGGCTGGA +
Preference number: 6 (lower is better)
Translates to: RLEGSRLLELLV*SLHSRKGCGAG
Trigger: TCCAGCCCCGCATCCTTTCCGAGAATGAAGAGACCATACCAGAAGTTCAAGAAGTCGAGAACCTTCTAAACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS CCA 72 bp CAATGGGAATATCACTGGCGGCAGAACGATTTCAATTaGTTTCAAAGGAATCACTTTGCCTTCTGGCCGCGC +
Preference number: 6 (lower is better)
Translates to: QWEYHWRQNDFN*FQRNHFAFWPR
Trigger: GCGCGGCCAGAAGGCAAAGTGATTCCTTTGAAACCAATTGAAATCGTTCTGCCGCCAGTGATATTCCCATTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS CAA 72 bp GTAACTTCGTGTTCATTTAGAATGAATTCCACTGGGTaGCTGACACCGAGGCTGGAACAGCGAGGTAGCAAC +
Preference number: 6 (lower is better)
Translates to: VTSCSFRMNSTG*LTPRLEQRGSN
Trigger: GTTGCTACCTCGCTGTTCCAGCCTCGGTGTCAGCAACCCAGTGGAATTCATTCTAAATGAACACGAAGTTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000202994.4
CDS CAA 72 bp TTATCTTCGTGTTCATTTAGAATGAATTCCACTGGGTaGCTGACACCGAGGCTGGAACAGCGAGGTAGCAAC +
Preference number: 6 (lower is better)
Translates to: LSSCSFRMNSTG*LTPRLEQRGSN
Trigger: GTTGCTACCTCGCTGTTCCAGCCTCGGTGTCAGCAACCCAGTGGAATTCATTCTAAATGAACACGAAGATAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS CAA 72 bp CGGCTTGAGACACAGTCTTTGCTGGGGCGGACATTTTaGTTGAAGTACTTATCTTGCTTTCTCGGTGCAAGA +
Preference number: 6 (lower is better)
Translates to: RLETQSLLGRTF*LKYLSCFLGAR
Trigger: TCTTGCACCGAGAAAGCAAGATAAGTACTTCAACAAAAATGTCCGCCCCAGCAAAGACTGTGTCTCAAGCCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS CAA 90 bp CAGGGGTTCACTTCCGTAATTTATTATGACTTTGTCTGGCGACCTTaGGATCCGAATACCCTGAAAAATGTTCGCTGCCGTAACGTACAC +
Preference number: 6 (lower is better)
Translates to: QGFTSVIYYDFVWRP*DPNTLKNVRCRNVH
Trigger: GTGTACGTTACGGCAGCGAACATTTTTCAGGGTATTCGGATCCAAAGGTCGCCAGACAAAGTCATAATAAATTACGGAAGTGAACCCCTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS GCA 72 bp GAACTTCTGGTATGGTCTCTTCATTCTCGGAAAGGATaGGGGGCTGGAATTTTCTGTCTTGGAAGTCATACA +
Preference number: 6 (lower is better)
Translates to: ELLVWSLHSRKG*GAGIFCLGSHT
Trigger: TGTATGACTTCCAAGACAGAAAATTCCAGCCCCGCATCCTTTCCGAGAATGAAGAGACCATACCAGAAGTTC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS CAA 72 bp CTTGAGACACAGTCTTTGCTGGGGCGGACATTTTTGTaGAAGTACTTATCTTGCTTTCTCGGTGCAAGAGCT +
Preference number: 6 (lower is better)
Translates to: LETQSLLGRTFL*KYLSCFLGARA
Trigger: AGCTCTTGCACCGAGAAAGCAAGATAAGTACTTCAACAAAAATGTCCGCCCCAGCAAAGACTGTGTCTCAAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS TCA 72 bp TGGACATATGGGCAACTGTGTACCACGAACCCGTGTTaGCCATTAGGACATCATCATCGATGTTTATCAAAG +
Preference number: 6 (lower is better)
Translates to: WTYGQLCTTNPC*PLGHHHRCLSK
Trigger: CTTTGATAAACATCGATGATGATGTCCTAATGGTCAACACGGGTTCGTGGTACACAGTTGCCCATATGTCCA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS TCA 72 bp AGGAGGACTGAGTCTGTAAGGTTGCATTTTAACCCCTaGGCTTTGATATTCCAGTGCTTTCTCAACAACGTC +
Preference number: 6 (lower is better)
Translates to: RRTESVRLHFNP*ALIFQCFLNNV
Trigger: GACGTTGTTGAGAAAGCACTGGAATATCAAAGCTCAGGGGTTAAAATGCAACCTTACAGACTCAGTCCTCCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS CAA 90 bp CTTGTTAAGATGGACATATGGGCAACTGTGTACCACGAACCCGTGTaGACCATTAGGACATCATCATCGATGTTTATCAAAGCCTTCACA +
Preference number: 6 (lower is better)
Translates to: LVKMDIWATVYHEPV*TIRTSSSMFIKAFT
Trigger: TGTGAAGGCTTTGATAAACATCGATGATGATGTCCTAATGGTCAACACGGGTTCGTGGTACACAGTTGCCCATATGTCCATCTTAACAAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS TCA 72 bp GAAATTATTGATCCTGTCCTCCCTAGAAGAGTCCTTTaGTCCAATGAAGCGGTAATAAAAATGGGTGGCTGG +
Preference number: 6 (lower is better)
Translates to: EIIDPVLPRRVL*SNEAVIKMGGW
Trigger: CCAGCCACCCATTTTTATTACCGCTTCATTGGATCAAAGGACTCTTCTAGGGAGGACAGGATCAATAATTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000031109.7
CDS CAA 72 bp ATGGACATATGGGCAACTGTGTACCACGAACCCGTGTaGACCATTAGGACATCATCATCGATGTTTATCAAA +
Preference number: 6 (lower is better)
Translates to: MDIWATVYHEPV*TIRTSSSMFIK
Trigger: TTTGATAAACATCGATGATGATGTCCTAATGGTCAACACGGGTTCGTGGTACACAGTTGCCCATATGTCCAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS CAA 90 bp CTTCTTGTTGTATTCCACATACAAAGATTTTCGAAGTGTGACCACTaGTTAAGATGGACATATGGGCAACTGTGTACCACGAACCCGTGT +
Preference number: 6 (lower is better)
Translates to: LLVVFHIQRFSKCDH*LRWTYGQLCTTNPC
Trigger: ACACGGGTTCGTGGTACACAGTTGCCCATATGTCCATCTTAACAAGTGGTCACACTTCGAAAATCTTTGTATGTGGAATACAACAAGAAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS TCA 72 bp TTTGTCTTAAAGCCGTTTAGAAGGTTCTCGACTTCTTaGACTTCTGGTATGGTCTCTTCATTCTCGGAAAGG +
Preference number: 6 (lower is better)
Translates to: FVLKPFRRFSTS*TSGMVSSFSER
Trigger: CCTTTCCGAGAATGAAGAGACCATACCAGAAGTTCAAGAAGTCGAGAACCTTCTAAACGGCTTTAAGACAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS TCA 72 bp TTTACTGGTATTTATCCAAGCATAAAGAGGCAAAGTTaGGGCCCTTTGTTCCTGTTTCCTAACTGTCTCTGG +
Preference number: 6 (lower is better)
Translates to: FTGIYPSIKRQS*GPLFLFPNCLW
Trigger: CCAGAGACAGTTAGGAAACAGGAACAAAGGGCCTCAACTTTGCCTCTTTATGCTTGGATAAATACCAGTAAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS TCA 72 bp AATTTCATTGCGTGTGTTAGCTGTTCAAACTGCTGCTaGACCAAAGTCTCGAGTTTATCTTTCGGTAGACCA +
Preference number: 6 (lower is better)
Translates to: NFIACVSCSNCC*TKVSSLSFGRP
Trigger: TGGTCTACCGAAAGATAAACTCGAGACTTTGGTTCAGCAGCAGTTTGAACAGCTAACACACGCAATGAAATT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
CDS TCA 72 bp AGAGTCCTAAAGAAGAGCAGAATCTCTTTGATCCAATaGAGCGGTAATAAAAATGGGTGGCTGGCATCTGAA +
Preference number: 6 (lower is better)
Translates to: RVLKKSRISLIQ*SGNKNGWLASE
Trigger: TTCAGATGCCAGCCACCCATTTTTATTACCGCTTCATTGGATCAAAGAGATTCTGCTCTTCTTTAGGACTCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000201100.4
CDS GCA 72 bp GACATTTTTGTTGAAGTACTTATCTTGCTTTCTCGGTaGAAGAGCTCGGAGATTTTCATTTGGACGTTGCTG +
Preference number: 6 (lower is better)
Translates to: DIFVEVLILLSR*KSSEIFIWTLL
Trigger: CAGCAACGTCCAAATGAAAATCTCCGAGCTCTTGCACCGAGAAAGCAAGATAAGTACTTCAACAAAAATGTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS CCA 72 bp CAGGGGTTCACTTCCGTAATTTATTATGACTTTGTCTaGCGACCTTTGGATCCGAATACCCTGAAAAATGTT +
Preference number: 6 (lower is better)
Translates to: QGFTSVIYYDFV*RPLDPNTLKNV
Trigger: AACATTTTTCAGGGTATTCGGATCCAAAGGTCGCCAGACAAAGTCATAATAAATTACGGAAGTGAACCCCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS CCA 72 bp ACATCATCATCGATGTTTATCAAAGCCTTCACAGAGTaGACGGCAAGACTTCGAGATTTGTCCTGGAAAATA +
Preference number: 6 (lower is better)
Translates to: TSSSMFIKAFTE*TARLRDLSWKI
Trigger: TATTTTCCAGGACAAATCTCGAAGTCTTGCCGTCCACTCTGTGAAGGCTTTGATAAACATCGATGATGATGT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4
CDS TCA 72 bp ATATACTTTCCAAAATATCTTGATACTTCAGGGTACTaGAAGCCAACTCATAGGACAAGCGCTGGAAAGATT +
Preference number: 6 (lower is better)
Translates to: IYFPKYLDTSGY*KPTHRTSAGKI
Trigger: AATCTTTCCAGCGCTTGTCCTATGAGTTGGCTTTCAGTACCCTGAAGTATCAAGATATTTTGGAAAGTATAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000031109.7
ENSMUST00000201100.4
ENSMUST00000202994.4