Pregenerated sensors for NSUN5 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000000916Ensembl transcript IDs: ENSMUST00000000940.15, ENSMUST00000170342.5, ENSMUST00000202422.2
Found 81 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | TTATGGCAGGGGTTAGGCTGGGTTGTGTGGAGCTGGAGAAGAGCTTaGCCTCAGGTCCCAAATGCCTGTGAGGATGGGGATGGGTGGGGG | + |
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Preference number: 1 (lower is better) Translates to: LWQGLGWVVWSWRRA*PQVPNACEDGDGWG Trigger: CCCCCACCCATCCCCATCCTCACAGGCATTTGGGACCTGAGGTCAAGCTCTTCTCCAGCTCCACACAACCCAGCCTAACCCCTGCCATAA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| 3UTR TCA 90 bp | CTACCTGTGCCTCAGGTAAGGAAGGGGCCTCCCTGCAATTCAGTCTaGGCTAATTACCTCAGCTCCACAGCAGGCCTGTATCCAGGGCCC | + |
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Preference number: 1 (lower is better) Translates to: LPVPQVRKGPPCNSV*ANYLSSTAGLYPGP Trigger: GGGCCCTGGATACAGGCCTGCTGTGGAGCTGAGGTAATTAGCTCAGACTGAATTGCAGGGAGGCCCCTTCCTTACCTGAGGCACAGGTAG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| 3UTR TCA 90 bp | GTCATAGATGTGAGTTTGCCCTTTATTTGTGAAGCGAAGAACTCGTaGCTGGTAGGACTGGGCCCAGTGAGGGACACAGAGTGCCAGGAC | + |
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Preference number: 1 (lower is better) Translates to: VIDVSLPFICEAKNS*LVGLGPVRDTECQD Trigger: GTCCTGGCACTCTGTGTCCCTCACTGGGCCCAGTCCTACCAGTCACGAGTTCTTCGCTTCACAAATAAAGGGCAAACTCACATCTATGAC 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| 3UTR TCA 90 bp | AATAAAACTGTGATCTGTCATAGATGTGAGTTTGCCCTTTATTTGTaGAGCGAAGAACTCGTGACTGGTAGGACTGGGCCCAGTGAGGGA | + |
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Preference number: 1 (lower is better) Translates to: NKTVICHRCEFALYL*SEELVTGRTGPSEG Trigger: TCCCTCACTGGGCCCAGTCCTACCAGTCACGAGTTCTTCGCTTCACAAATAAAGGGCAAACTCACATCTATGACAGATCACAGTTTTATT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| 3UTR-3UTR CCA 90 bp | GTTAGGCTGGGTTGTGTGGAGCTGGAGAAGAGCTTGACCTCAGGTCCCAAATGCGAGGATGGGGATGGGTaGGGGTCTGAACACGAAGCC | + |
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Preference number: 2 (lower is better) Translates to: VRLGCVELEKSLTSGPKCEDGDG*GSEHEA Trigger: GGCTTCGTGTTCAGACCCCCACCCATCCCCATCCTC...GCATTTGGGACCTGAGGTCAAGCTCTTCTCCAGCTCCACACAACCCAGCCTAAC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| 3UTR-3UTR TCA 90 bp | GGGTTGTGTGGAGCTGGAGAAGAGCTTGACCTCAGGTCCCAAATGCCTGTGAGGCTTCCCACCACAGACTaGGTTCCTGTGAGTGTAGCT | + |
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Preference number: 2 (lower is better) Translates to: GLCGAGEELDLRSQMPVRLPTTD*VPVSVA Trigger: AGCTACACTCACAGGAACTCAGTCTGTGGTGGGAAG...CCTCACAGGCATTTGGGACCTGAGGTCAAGCTCTTCTCCAGCTCCACACAACCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| 3UTR-3UTR TCA 90 bp | GGGTTGTGTGGAGCTGGAGAAGAGCTTGACCTCAGGTCCCAAATGCCTGTGAGGTTTGCCCTTTATTTGTaGAGCGAAGAACTCGTGACT | + |
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Preference number: 2 (lower is better) Translates to: GLCGAGEELDLRSQMPVRFALYL*SEELVT Trigger: AGTCACGAGTTCTTCGCTTCACAAATAAAGGGCAAA...CCTCACAGGCATTTGGGACCTGAGGTCAAGCTCTTCTCCAGCTCCACACAACCC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| 3UTR-3UTR GCA 90 bp | CCCTTTGTGACTGGGATTGAATGTTTTATGGCAGGGGTTAGGCTGGGTTGTGTGGTGAGGGACACAGAGTaGCAGGACATCATCTTCCCT | + |
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Preference number: 2 (lower is better) Translates to: PFVTGIECFMAGVRLGCVVRDTE*QDIIFP Trigger: AGGGAAGATGATGTCCTGGCACTCTGTGTCCCTCAC...CACACAACCCAGCCTAACCCCTGCCATAAAACATTCAATCCCAGTCACAAAGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| 3UTR GCA 72 bp | CCTGGAGTAGCCTCGGTGTGTGAGCACATTTGTCCGTaGTCACGCTGGACAGGGACAGGGAGGCTGGGGCTT | + |
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Preference number: 3 (lower is better) Translates to: PGVASVCEHICP*SRWTGTGRLGL Trigger: AAGCCCCAGCCTCCCTGTCCCTGTCCAGCGTGAGCACGGACAAATGTGCTCACACACCGAGGCTACTCCAGG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| 3UTR CCA 72 bp | CCTCAGGTCCCAAATGCCTGTGAGGATGGGGATGGGTaGGGGTCTGAACACGAAGCCTCTACCTGTGCCTCA | + |
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Preference number: 3 (lower is better) Translates to: PQVPNACEDGDG*GSEHEASTCAS Trigger: TGAGGCACAGGTAGAGGCTTCGTGTTCAGACCCCCACCCATCCCCATCCTCACAGGCATTTGGGACCTGAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| 3UTR TCA 72 bp | CCTCAGGTAAGGAAGGGGCCTCCCTGCAATTCAGTCTaGGCTAATTACCTCAGCTCCACAGCAGGCCTGTAT | + |
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Preference number: 3 (lower is better) Translates to: PQVRKGPPCNSV*ANYLSSTAGLY Trigger: ATACAGGCCTGCTGTGGAGCTGAGGTAATTAGCTCAGACTGAATTGCAGGGAGGCCCCTTCCTTACCTGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| 3UTR TCA 72 bp | GTGAGTTTGCCCTTTATTTGTGAAGCGAAGAACTCGTaGCTGGTAGGACTGGGCCCAGTGAGGGACACAGAG | + |
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Preference number: 3 (lower is better) Translates to: VSLPFICEAKNS*LVGLGPVRDTE Trigger: CTCTGTGTCCCTCACTGGGCCCAGTCCTACCAGTCACGAGTTCTTCGCTTCACAAATAAAGGGCAAACTCAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| 3UTR GCA 72 bp | AGAAGCTCAGGCAGCAAGGGATCCAAAAGAAAATGCTaGCCCTTGAGAGCTCGCAAGTCTTCCAGGCTGGAA | + |
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Preference number: 3 (lower is better) Translates to: RSSGSKGSKRKC*PLRARKSSRLE Trigger: TTCCAGCCTGGAAGACTTGCGAGCTCTCAAGGGGCAGCATTTTCTTTTGGATCCCTTGCTGCCTGAGCTTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000202422.2 |
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| CDS-3UTR TCA 90 bp | GAGGCAGCTGGCCTTGTCCTGCAGGATGAGATGGCCAGCACGGTAGAGTGGATGGCCCAGCACTGGCGATaGCAGCGTCCAGCACGGCCG | + |
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Preference number: 4 (lower is better) Translates to: EAAGLVLQDEMASTVEWMAQHWR*QRPARP Trigger: CGGCCGTGCTGGACGCTGTCATCGCCAGTGCTGGGC...CATCCACTCTACCGTGCTGGCCATCTCATCCTGCAGGACAAGGCCAGCTGCCTC 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170342.5 |
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| CDS-3UTR TCA 90 bp | CAGTCTGAGCTAATTACCTCAGCTCCACAGCAGGCCTGTATCCAGGGCCCCTGCGCCCAGCACTGGCGATaGCAGCGTCCAGCACGGCCG | + |
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Preference number: 4 (lower is better) Translates to: QSELITSAPQQACIQGPCAQHWR*QRPARP Trigger: CGGCCGTGCTGGACGCTGTCATCGCCAGTGCTGGGC...GCAGGGGCCCTGGATACAGGCCTGCTGTGGAGCTGAGGTAATTAGCTCAGACTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS-3UTR TCA 90 bp | ATGCTGCCCCTTGAGAGCTCGCAAGTCTTCCAGGCTGGAAGCCCGACCCTGGTACACCCCGATGAACCTTaGGTCGGGCCAGCTCAGCCT | + |
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Preference number: 4 (lower is better) Translates to: MLPLESSQVFQAGSPTLVHPDEP*VGPAQP Trigger: AGGCTGAGCTGGCCCGACTCAAGGTTCATCGGGGTG...TACCAGGGTCGGGCTTCCAGCCTGGAAGACTTGCGAGCTCTCAAGGGGCAGCAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000202422.2 |
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| CDS-3UTR TCA 90 bp | GGGTTGTGTGGAGCTGGAGAAGAGCTTGACCTCAGGTCCCAAATGCCTGTGAGGCACCCCGATGAACCTTaGGTCGGGCCAGCTCAGCCT | + |
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Preference number: 4 (lower is better) Translates to: GLCGAGEELDLRSQMPVRHPDEP*VGPAQP Trigger: AGGCTGAGCTGGCCCGACTCAAGGTTCATCGGGGTG...CCTCACAGGCATTTGGGACCTGAGGTCAAGCTCTTCTCCAGCTCCACACAACCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS-3UTR GCA 90 bp | GCAGCTGGCCTTGTCCTGCAGGATGAGATGGCCAGCACGGTAGAGTGGATGCTCCCAGGCTTGGCAAGGTaGGGTCTCAGCTTCTTCTCG | + |
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Preference number: 4 (lower is better) Translates to: AAGLVLQDEMASTVEWMLPGLAR*GLSFFS Trigger: CGAGAAGAAGCTGAGACCGCACCTTGCCAAGCCTGG...GAGCATCCACTCTACCGTGCTGGCCATCTCATCCTGCAGGACAAGGCCAGCTGC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170342.5 |
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| CDS-3UTR CCA 90 bp | CTGGGCCCAGTGAGGGACACAGAGTGCCAGGACATCATCTTCCCTTCCCAGAAGATCGGTCTGTGGGGCTaGGGTTGGTACCACCTCTGC | + |
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Preference number: 4 (lower is better) Translates to: LGPVRDTECQDIIFPSQKIGLWG*GWYHLC Trigger: GCAGAGGTGGTACCAACCCCAGCCCCACAGACCGAT...CTTCTGGGAAGGGAAGATGATGTCCTGGCACTCTGTGTCCCTCACTGGGCCCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS-3UTR GCA 90 bp | GGGCCCCTGCGGAGGCATCCTGGAGTAGCCTCGGTGTGTGAGCACATTTGTCCGGCTGGCACCAACTGCTaGTTTGCGTCTTCTCTTTCT | + |
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Preference number: 4 (lower is better) Translates to: GPLRRHPGVASVCEHICPAGTNC*FASSLS Trigger: AGAAAGAGAAGACGCAAAGCAGCAGTTGGTGCCAGC...CGGACAAATGTGCTCACACACCGAGGCTACTCCAGGATGCCTCCGCAGGGGCCC 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS-3UTR GCA 90 bp | CTGGGCCCAGTGAGGGACACAGAGTGCCAGGACATCATCTTCCCTTCCCAGAAGAGCACCTTGGCAAGGTaGGGTCTCAGCTTCTTCTCG | + |
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Preference number: 4 (lower is better) Translates to: LGPVRDTECQDIIFPSQKSTLAR*GLSFFS Trigger: CGAGAAGAAGCTGAGACCGCACCTTGCCAAGGTGCT...CTTCTGGGAAGGGAAGATGATGTCCTGGCACTCTGTGTCCCTCACTGGGCCCAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS-3UTR GCA 90 bp | TGGGGGTCTGAACACGAAGCCTCTACCTGTGCCTCAGGTAAGGAAGGGGCCTCCGGTCTGGAGCTCTCTTaGAACAGGTCCTCATTTCGG | + |
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Preference number: 4 (lower is better) Translates to: WGSEHEASTCASGKEGASGLELS*NRSSFR Trigger: CCGAAATGAGGACCTGTTGCAAGAGAGCTCCAGACC...GGAGGCCCCTTCCTTACCTGAGGCACAGGTAGAGGCTTCGTGTTCAGACCCCCA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS-3UTR GCA 90 bp | ATGCTGCCCCTTGAGAGCTCGCAAGTCTTCCAGGCTGGAAGCCCGACCCTGGTAGGTCTGGAGCTCTCTTaGAACAGGTCCTCATTTCGG | + |
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Preference number: 4 (lower is better) Translates to: MLPLESSQVFQAGSPTLVGLELS*NRSSFR Trigger: CCGAAATGAGGACCTGTTGCAAGAGAGCTCCAGACC...TACCAGGGTCGGGCTTCCAGCCTGGAAGACTTGCGAGCTCTCAAGGGGCAGCAT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000202422.2 |
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| CDS-3UTR GCA 90 bp | GGGTTGTGTGGAGCTGGAGAAGAGCTTGACCTCAGGTCCCAAATGCCTGTGAGGAGAGGGGAACCTAAGTaGATGGCACAGAGCCCGCTG | + |
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Preference number: 4 (lower is better) Translates to: GLCGAGEELDLRSQMPVRRGEPK*MAQSPL Trigger: CAGCGGGCTCTGTGCCATGCACTTAGGTTCCCCTCT...CCTCACAGGCATTTGGGACCTGAGGTCAAGCTCTTCTCCAGCTCCACACAACCC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS-3UTR CCA 90 bp | GTAGGACTGGGCCCAGTGAGGGACACAGAGTGCCAGGACATCATCTTCCCTTCCAGGCTTGGCCAGGTCTaGAGCTCTCTTGCAACAGGT | + |
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Preference number: 4 (lower is better) Translates to: VGLGPVRDTECQDIIFPSRLGQV*SSLATG Trigger: ACCTGTTGCAAGAGAGCTCCAGACCTGGCCAAGCCT...GGAAGGGAAGATGATGTCCTGGCACTCTGTGTCCCTCACTGGGCCCAGTCCTAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS-3UTR CCA 90 bp | GTTAGGCTGGGTTGTGTGGAGCTGGAGAAGAGCTTGACCTCAGGTCCCAAATGCCTCGGTGAGGCCATGTaGGTAGGACAGGAGCCAACC | + |
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Preference number: 4 (lower is better) Translates to: VRLGCVELEKSLTSGPKCLGEAM*VGQEPT Trigger: GGTTGGCTCCTGTCCTACCCACATGGCCTCACCGAG...GCATTTGGGACCTGAGGTCAAGCTCTTCTCCAGCTCCACACAACCCAGCCTAAC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS-3UTR TCA 90 bp | GATCTGTCTGTGCAGGAAATACAAGAAGCTCAGGCAGCAAGGGATCCAAAAGAAGCCCAGCACTGGCGATaGCAGCGTCCAGCACGGCCG | + |
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Preference number: 4 (lower is better) Translates to: DLSVQEIQEAQAARDPKEAQHWR*QRPARP Trigger: CGGCCGTGCTGGACGCTGTCATCGCCAGTGCTGGGC...TTCTTTTGGATCCCTTGCTGCCTGAGCTTCTTGTATTTCCTGCACAGACAGATC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000202422.2 |
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| CDS-3UTR GCA 90 bp | TGGGAGGCAGCTGGCCTTGTCCTGCAGGATGAGATGGCCAGCACGGTAGAGTGGTCCAAAAGAAAATGCTaGCCCTTGAGAGCTCGCAAG | + |
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Preference number: 4 (lower is better) Translates to: WEAAGLVLQDEMASTVEWSKRKC*PLRARK Trigger: CTTGCGAGCTCTCAAGGGGCAGCATTTTCTTTTGGA...CCACTCTACCGTGCTGGCCATCTCATCCTGCAGGACAAGGCCAGCTGCCTCCCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170342.5 |
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| CDS-3UTR TCA 90 bp | GTAGGACTGGGCCCAGTGAGGGACACAGAGTGCCAGGACATCATCTTCCCTTCCTCTTTGGGACTTGGCTaGGAGGTTCTGGATCCATTG | + |
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Preference number: 4 (lower is better) Translates to: VGLGPVRDTECQDIIFPSSLGLG*EVLDPL Trigger: CAATGGATCCAGAACCTCTCAGCCAAGTCCCAAAGA...GGAAGGGAAGATGATGTCCTGGCACTCTGTGTCCCTCACTGGGCCCAGTCCTAC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS-3UTR GCA 90 bp | GAGGCAGCTGGCCTTGTCCTGCAGGATGAGATGGCCAGCACGGTAGAGTGGATGTCAGGTTCTGGAAGTTaGTGGAATACACCAACCCCT | + |
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Preference number: 4 (lower is better) Translates to: EAAGLVLQDEMASTVEWMSGSGS*WNTPTP Trigger: AGGGGTTGGTGTATTCCAGCAACTTCCAGAACCTGA...CATCCACTCTACCGTGCTGGCCATCTCATCCTGCAGGACAAGGCCAGCTGCCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000170342.5 |
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| CDS-3UTR GCA 90 bp | GCTGGCCTTGTCCTGCAGGATGAGATGGCCAGCACGGTAGAGTGGATGCTCGTGACCAGAGCGTACAACTaGTTCAGGTTCTGGAAGTTG | + |
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Preference number: 4 (lower is better) Translates to: AGLVLQDEMASTVEWMLVTRAYN*FRFWKL Trigger: CAACTTCCAGAACCTGAAGCAGTTGTACGCTCTGGT...CACGAGCATCCACTCTACCGTGCTGGCCATCTCATCCTGCAGGACAAGGCCAGC 56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170342.5 |
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| CDS-3UTR CCA 90 bp | GATCTGTCTGTGCAGGAAATACAAGAAGCTCAGGCAGCAAGGGATCCAAAAGAAGCCTTGAGCCTTGCCTaGTGCCGGCCCAGCAGAGCC | + |
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Preference number: 4 (lower is better) Translates to: DLSVQEIQEAQAARDPKEALSLA*CRPSRA Trigger: GGCTCTGCTGGGCCGGCACCAGGCAAGGCTCAAGGC...TTCTTTTGGATCCCTTGCTGCCTGAGCTTCTTGTATTTCCTGCACAGACAGATC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000202422.2 |
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| CDS-3UTR CCA 90 bp | GTGACTGGGATTGAATGTTTTATGGCAGGGGTTAGGCTGGGTTGTGTGGAGCTGGGGAACCTAAGTGCATaGCACAGAGCCCGCTGCTGG | + |
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Preference number: 4 (lower is better) Translates to: VTGIECFMAGVRLGCVELGNLSA*HRARCW Trigger: CCAGCAGCGGGCTCTGTGCCATGCACTTAGGTTCCC...CAGCTCCACACAACCCAGCCTAACCCCTGCCATAAAACATTCAATCCCAGTCAC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS-3UTR TCA 90 bp | GTGACTGGGATTGAATGTTTTATGGCAGGGGTTAGGCTGGGTTGTGTGGAGCTGCCTTGTCCTGCAGGATaGGATGGCCAGCACGGTAGA | + |
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Preference number: 4 (lower is better) Translates to: VTGIECFMAGVRLGCVELPCPAG*DGQHGR Trigger: TCTACCGTGCTGGCCATCTCATCCTGCAGGACAAGG...CAGCTCCACACAACCCAGCCTAACCCCTGCCATAAAACATTCAATCCCAGTCAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS-3UTR GCA 90 bp | CATCATCTTCCCTTCCCAGAAGAGCAGGGTTCCCACAGTAAGCATGGTTCTGCTGCTGCCGGCTCAGCATaGCAGAGCCACTACAAGAAG | + |
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Preference number: 4 (lower is better) Translates to: HHLPFPEEQGSHSKHGSAAAGSA*QSHYKK Trigger: CTTCTTGTAGTGGCTCTGGCATGCTGAGCCGGCAGC...AGCAGAACCATGCTTACTGTGGGAACCCTGCTCTTCTGGGAAGGGAAGATGATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS-3UTR CCA 90 bp | GCTGGCCTTGTCCTGCAGGATGAGATGGCCAGCACGGTAGAGTGGATGCTCGTGAACTGCTTCAGGTTCTaGAAGTTGCTGGAATACACC | + |
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Preference number: 4 (lower is better) Translates to: AGLVLQDEMASTVEWMLVNCFRF*KLLEYT Trigger: GGTGTATTCCAGCAACTTCCAGAACCTGAAGCAGTT...CACGAGCATCCACTCTACCGTGCTGGCCATCTCATCCTGCAGGACAAGGCCAGC 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170342.5 |
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| CDS-3UTR CCA 90 bp | TTCTTCTTTTATAAACAGTGTGATGTAGCTGTCCCTGGTCCCCTTCCCTTTGTGGCCTTGAGCCTTGCCTaGTGCCGGCCCAGCAGAGCC | + |
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Preference number: 4 (lower is better) Translates to: FFFYKQCDVAVPGPLPFVALSLA*CRPSRA Trigger: GGCTCTGCTGGGCCGGCACCAGGCAAGGCTCAAGGC...CACAAAGGGAAGGGGACCAGGGACAGCTACATCACACTGTTTATAAAAGAAGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS-3UTR CCA 90 bp | CTGGGCCCAGTGAGGGACACAGAGTGCCAGGACATCATCTTCCCTTCCCAGAAGTTTCTCTTTGGGACTTaGCTGAGAGGTTCTGGATCC | + |
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Preference number: 4 (lower is better) Translates to: LGPVRDTECQDIIFPSQKFLFGT*LRGSGS Trigger: GGATCCAGAACCTCTCAGCCAAGTCCCAAAGAGAAA...CTTCTGGGAAGGGAAGATGATGTCCTGGCACTCTGTGTCCCTCACTGGGCCCAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS-3UTR GCA 90 bp | GGGTTGTGTGGAGCTGGAGAAGAGCTTGACCTCAGGTCCCAAATGCCTGTGAGGTCCAAAAGAAAATGCTaGCCCTTGAGAGCTCGCAAG | + |
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Preference number: 4 (lower is better) Translates to: GLCGAGEELDLRSQMPVRSKRKC*PLRARK Trigger: CTTGCGAGCTCTCAAGGGGCAGCATTTTCTTTTGGA...CCTCACAGGCATTTGGGACCTGAGGTCAAGCTCTTCTCCAGCTCCACACAACCC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS-3UTR GCA 90 bp | GAACTCGTGACTGGTAGGACTGGGCCCAGTGAGGGACACAGAGTGCCAGGACATGTGCAGATCTGTCTGTaGAGGAAATACAAGAAGCTC | + |
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Preference number: 4 (lower is better) Translates to: ELVTGRTGPSEGHRVPGHVQICL*RKYKKL Trigger: GAGCTTCTTGTATTTCCTGCACAGACAGATCTGCAC...ATGTCCTGGCACTCTGTGTCCCTCACTGGGCCCAGTCCTACCAGTCACGAGTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS-3UTR GCA 90 bp | CAGTCTGAGCTAATTACCTCAGCTCCACAGCAGGCCTGTATCCAGGGCCCCTGCCACCAACTGCTGCTTTaGGTCTTCTCTTTCTCTTTG | + |
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Preference number: 4 (lower is better) Translates to: QSELITSAPQQACIQGPCHQLLL*VFSFSL Trigger: CAAAGAGAAAGAGAAGACGCAAAGCAGCAGTTGGTG...GCAGGGGCCCTGGATACAGGCCTGCTGTGGAGCTGAGGTAATTAGCTCAGACTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS-3UTR CCA 90 bp | CCCTTTGTGACTGGGATTGAATGTTTTATGGCAGGGGTTAGGCTGGGTTGTGTGGGGCTGCAATGTAGCTaGTCTTGTTACCAGGGGCAG | + |
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Preference number: 4 (lower is better) Translates to: PFVTGIECFMAGVRLGCVGLQCS*SCYQGQ Trigger: CTGCCCCTGGTAACAAGACCAGCTACATTGCAGCCC...CACACAACCCAGCCTAACCCCTGCCATAAAACATTCAATCCCAGTCACAAAGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS-3UTR GCA 90 bp | TTCTTCTTTTATAAACAGTGTGATGTAGCTGTCCCTGGTCCCCTTCCCTTTGTGAACCCGGCCAAGGCCTaGAAGCGCTCCTTGCTAGGT | + |
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Preference number: 4 (lower is better) Translates to: FFFYKQCDVAVPGPLPFVNPAKA*KRSLLG Trigger: ACCTAGCAAGGAGCGCTTGCAGGCCTTGGCCGGGTT...CACAAAGGGAAGGGGACCAGGGACAGCTACATCACACTGTTTATAAAAGAAGAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS-3UTR GCA 90 bp | GTGACTGGGATTGAATGTTTTATGGCAGGGGTTAGGCTGGGTTGTGTGGAGCTGTCAGGTTCTGGAAGTTaGTGGAATACACCAACCCCT | + |
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Preference number: 4 (lower is better) Translates to: VTGIECFMAGVRLGCVELSGSGS*WNTPTP Trigger: AGGGGTTGGTGTATTCCAGCAACTTCCAGAACCTGA...CAGCTCCACACAACCCAGCCTAACCCCTGCCATAAAACATTCAATCCCAGTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS-3UTR GCA 90 bp | GTGACTGGGATTGAATGTTTTATGGCAGGGGTTAGGCTGGGTTGTGTGGAGCTGACCAGAGCGTACAACTaGTTCAGGTTCTGGAAGTTG | + |
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Preference number: 4 (lower is better) Translates to: VTGIECFMAGVRLGCVELTRAYN*FRFWKL Trigger: CAACTTCCAGAACCTGAAGCAGTTGTACGCTCTGGT...CAGCTCCACACAACCCAGCCTAACCCCTGCCATAAAACATTCAATCCCAGTCAC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS-3UTR GCA 90 bp | TGTCTGTGCAGGAAATACAAGAAGCTCAGGCAGCAAGGGATCCAAAAGAAAATGAGCACCTTGGCAAGGTaGGGTCTCAGCTTCTTCTCG | + |
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Preference number: 4 (lower is better) Translates to: CLCRKYKKLRQQGIQKKMSTLAR*GLSFFS Trigger: CGAGAAGAAGCTGAGACCGCACCTTGCCAAGGTGCT...CATTTTCTTTTGGATCCCTTGCTGCCTGAGCTTCTTGTATTTCCTGCACAGACA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000202422.2 |
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| CDS-3UTR CCA 90 bp | CATCATCTTCCCTTCCCAGAAGAGCAGGGTTCCCACAGTAAGCATGGTTCTGCTAACTGCTTCAGGTTCTaGAAGTTGCTGGAATACACC | + |
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Preference number: 4 (lower is better) Translates to: HHLPFPEEQGSHSKHGSANCFRF*KLLEYT Trigger: GGTGTATTCCAGCAACTTCCAGAACCTGAAGCAGTT...AGCAGAACCATGCTTACTGTGGGAACCCTGCTCTTCTGGGAAGGGAAGATGATG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS-3UTR CCA 90 bp | CCCTTTGTGACTGGGATTGAATGTTTTATGGCAGGGGTTAGGCTGGGTTGTGTGTCTTCTCTTTCTCTTTaGGACTTGGCTGAGAGGTTC | + |
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Preference number: 4 (lower is better) Translates to: PFVTGIECFMAGVRLGCVSSLSL*DLAERF Trigger: GAACCTCTCAGCCAAGTCCCAAAGAGAAAGAGAAGA...CACACAACCCAGCCTAACCCCTGCCATAAAACATTCAATCCCAGTCACAAAGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS-3UTR CCA 90 bp | TGTCTGTGCAGGAAATACAAGAAGCTCAGGCAGCAAGGGATCCAAAAGAAAATGTACCTTGGCCAGGTCTaGAGCTCTCTTGCAACAGGT | + |
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Preference number: 4 (lower is better) Translates to: CLCRKYKKLRQQGIQKKMYLGQV*SSLATG Trigger: ACCTGTTGCAAGAGAGCTCCAGACCTGGCCAAGGTA...CATTTTCTTTTGGATCCCTTGCTGCCTGAGCTTCTTGTATTTCCTGCACAGACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000202422.2 |
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| CDS-3UTR GCA 90 bp | GTCTGTGCAGGAAATACAAGAAGCTCAGGCAGCAAGGGATCCAAAAGAAAATGCTCAGGTTCTGGAAGTTaGTGGAATACACCAACCCCT | + |
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Preference number: 4 (lower is better) Translates to: VCAGNTRSSGSKGSKRKCSGSGS*WNTPTP Trigger: AGGGGTTGGTGTATTCCAGCAACTTCCAGAACCTGA...GCATTTTCTTTTGGATCCCTTGCTGCCTGAGCTTCTTGTATTTCCTGCACAGAC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000202422.2 |
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| CDS-3UTR TCA 90 bp | CCCTTTGTGACTGGGATTGAATGTTTTATGGCAGGGGTTAGGCTGGGTTGTGTGAGAAACCTTGTCTCTTaGAATAATCGATTGCATCCT | + |
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Preference number: 4 (lower is better) Translates to: PFVTGIECFMAGVRLGCVRNLVS*NNRLHP Trigger: AGGATGCAATCGATTATTTCAAGAGACAAGGTTTCT...CACACAACCCAGCCTAACCCCTGCCATAAAACATTCAATCCCAGTCACAAAGGG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS-3UTR CCA 90 bp | CTGTCTGTGCAGGAAATACAAGAAGCTCAGGCAGCAAGGGATCCAAAAGAAAATAACTGCTTCAGGTTCTaGAAGTTGCTGGAATACACC | + |
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Preference number: 4 (lower is better) Translates to: LSVQEIQEAQAARDPKENNCFRF*KLLEYT Trigger: GGTGTATTCCAGCAACTTCCAGAACCTGAAGCAGTT...ATTTTCTTTTGGATCCCTTGCTGCCTGAGCTTCTTGTATTTCCTGCACAGACAG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000202422.2 |
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| CDS-3UTR CAA 90 bp | TGGGGGTCTGAACACGAAGCCTCTACCTGTGCCTCAGGTAAGGAAGGGGCCTCCCGGGCCAGCTCAGCCTaGAGCCTTGCCTGGTGCCGG | + |
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Preference number: 5 (lower is better) Translates to: WGSEHEASTCASGKEGASRASSA*SLAWCR Trigger: CCGGCACCAGGCAAGGCTCAAGGCTGAGCTGGCCCG...GGAGGCCCCTTCCTTACCTGAGGCACAGGTAGAGGCTTCGTGTTCAGACCCCCA 66% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS CCA 90 bp | CGCTGCAGAGAGGGGAACCTAAGTGCATGGCACAGAGCCCGCTGCTaGAACCCGGCCAAGGCCTGCAAGCGCTCCTTGCTAGGTGTGCCT | + |
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Preference number: 5 (lower is better) Translates to: RCREGNLSAWHRARC*NPAKACKRSLLGVP Trigger: AGGCACACCTAGCAAGGAGCGCTTGCAGGCCTTGGCCGGGTTCCAGCAGCGGGCTCTGTGCCATGCACTTAGGTTCCCCTCTCTGCAGCG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS-3UTR CAA 90 bp | TGGGAGGCAGCTGGCCTTGTCCTGCAGGATGAGATGGCCAGCACGGTAGAGTGGGCAAGTCTTCCAGGCTaGGCAAGGTGCGGTCTCAGC | + |
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Preference number: 5 (lower is better) Translates to: WEAAGLVLQDEMASTVEWASLPG*ARCGLS Trigger: GCTGAGACCGCACCTTGCCAAGCCTGGAAGACTTGC...CCACTCTACCGTGCTGGCCATCTCATCCTGCAGGACAAGGCCAGCTGCCTCCCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170342.5 |
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| CDS-3UTR CAA 90 bp | GTAGGACTGGGCCCAGTGAGGGACACAGAGTGCCAGGACATCATCTTCCCTTCCTCCTCAGGGCGGGTCTaGAGCGTGTTCACACGCACG | + |
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Preference number: 5 (lower is better) Translates to: VGLGPVRDTECQDIIFPSSSGRV*SVFTRT Trigger: CGTGCGTGTGAACACGCTCAAGACCCGCCCTGAGGA...GGAAGGGAAGATGATGTCCTGGCACTCTGTGTCCCTCACTGGGCCCAGTCCTAC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS GCA 90 bp | TGCAAGCGCTCCTTGCTAGGTGTGCCTTCCCCATGTTCCTCCAGCTaGCGGCTCAGCATGCCAGAGCCACTACAAGAAGGATCCAGCAAG | + |
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Preference number: 5 (lower is better) Translates to: CKRSLLGVPSPCSSS*RLSMPEPLQEGSSK Trigger: CTTGCTGGATCCTTCTTGTAGTGGCTCTGGCATGCTGAGCCGGCAGCTGGAGGAACATGGGGAAGGCACACCTAGCAAGGAGCGCTTGCA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS-3UTR CAA 90 bp | GGGTTGTGTGGAGCTGGAGAAGAGCTTGACCTCAGGTCCCAAATGCCTGTGAGGTGGTACCTGGTAGGCTaGGCCAGGTCTGGAGCTCTC | + |
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Preference number: 5 (lower is better) Translates to: GLCGAGEELDLRSQMPVRWYLVG*ARSGAL Trigger: GAGAGCTCCAGACCTGGCCAAGCCTACCAGGTACCA...CCTCACAGGCATTTGGGACCTGAGGTCAAGCTCTTCTCCAGCTCCACACAACCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS-3UTR CAA 90 bp | GAGGCAGCTGGCCTTGTCCTGCAGGATGAGATGGCCAGCACGGTAGAGTGGATGAGAAAATGCTGCCCCTaGAGAGCTCGCAAGTCTTCC | + |
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Preference number: 5 (lower is better) Translates to: EAAGLVLQDEMASTVEWMRKCCP*RARKSS Trigger: GGAAGACTTGCGAGCTCTCAAGGGGCAGCATTTTCT...CATCCACTCTACCGTGCTGGCCATCTCATCCTGCAGGACAAGGCCAGCTGCCTC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000170342.5 |
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| CDS-3UTR CAA 90 bp | GAGGCAGCTGGCCTTGTCCTGCAGGATGAGATGGCCAGCACGGTAGAGTGGATGTTCAGGTTCTGGAAGTaGCTGGAATACACCAACCCC | + |
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Preference number: 5 (lower is better) Translates to: EAAGLVLQDEMASTVEWMFRFWK*LEYTNP Trigger: GGGGTTGGTGTATTCCAGCAACTTCCAGAACCTGAA...CATCCACTCTACCGTGCTGGCCATCTCATCCTGCAGGACAAGGCCAGCTGCCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000170342.5 |
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| CDS-3UTR CAA 90 bp | ATGCTGCCCCTTGAGAGCTCGCAAGTCTTCCAGGCTGGAAGCCCGACCCTGGTATTCAGGTTCTGGAAGTaGCTGGAATACACCAACCCC | + |
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Preference number: 5 (lower is better) Translates to: MLPLESSQVFQAGSPTLVFRFWK*LEYTNP Trigger: GGGGTTGGTGTATTCCAGCAACTTCCAGAACCTGAA...TACCAGGGTCGGGCTTCCAGCCTGGAAGACTTGCGAGCTCTCAAGGGGCAGCAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000202422.2 |
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| CDS-3UTR CAA 90 bp | CTGGGCCCAGTGAGGGACACAGAGTGCCAGGACATCATCTTCCCTTCCCAGAAGAGAAAATGCTGCCCCTaGAGAGCTCGCAAGTCTTCC | + |
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Preference number: 5 (lower is better) Translates to: LGPVRDTECQDIIFPSQKRKCCP*RARKSS Trigger: GGAAGACTTGCGAGCTCTCAAGGGGCAGCATTTTCT...CTTCTGGGAAGGGAAGATGATGTCCTGGCACTCTGTGTCCCTCACTGGGCCCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS-3UTR CAA 90 bp | CTGTCTGTGCAGGAAATACAAGAAGCTCAGGCAGCAAGGGATCCAAAAGAAAATCGGGCCAGCTCAGCCTaGAGCCTTGCCTGGTGCCGG | + |
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Preference number: 5 (lower is better) Translates to: LSVQEIQEAQAARDPKENRASSA*SLAWCR Trigger: CCGGCACCAGGCAAGGCTCAAGGCTGAGCTGGCCCG...ATTTTCTTTTGGATCCCTTGCTGCCTGAGCTTCTTGTATTTCCTGCACAGACAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000202422.2 |
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| CDS GCA 90 bp | TCTTCTCTTTCTCTTTGGGACTTGGCTGAGAGGTTCTGGATCCATTaGATCGGTCTGTGGGGCTGGGGTTGGTACCACCTCTGCACGTTC | + |
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Preference number: 5 (lower is better) Translates to: SSLSLWDLAERFWIH*IGLWGWGWYHLCTF Trigger: GAACGTGCAGAGGTGGTACCAACCCCAGCCCCACAGACCGATGCAATGGATCCAGAACCTCTCAGCCAAGTCCCAAAGAGAAAGAGAAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS CCA 90 bp | CTTTGGGACTTGGCTGAGAGGTTCTGGATCCATTGCATCGGTCTGTaGGGCTGGGGTTGGTACCACCTCTGCACGTTCAAACACAGCAAT | + |
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Preference number: 5 (lower is better) Translates to: LWDLAERFWIHCIGL*GWGWYHLCTFKHSN Trigger: ATTGCTGTGTTTGAACGTGCAGAGGTGGTACCAACCCCAGCCCCACAGACCGATGCAATGGATCCAGAACCTCTCAGCCAAGTCCCAAAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS-3UTR CAA 90 bp | CAGTCTGAGCTAATTACCTCAGCTCCACAGCAGGCCTGTATCCAGGGCCCCTGCGCACCAACTGCTGCTTaGCGTCTTCTCTTTCTCTTT | + |
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Preference number: 5 (lower is better) Translates to: QSELITSAPQQACIQGPCAPTAA*RLLFLF Trigger: AAAGAGAAAGAGAAGACGCAAAGCAGCAGTTGGTGC...GCAGGGGCCCTGGATACAGGCCTGCTGTGGAGCTGAGGTAATTAGCTCAGACTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS CCA 90 bp | CTGCATGCTGGCACCAACTGCTGCTTTGCGTCTTCTCTTTCTCTTTaGGACTTGGCTGAGAGGTTCTGGATCCATTGCATCGGTCTGTGG | + |
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Preference number: 5 (lower is better) Translates to: LHAGTNCCFASSLSL*DLAERFWIHCIGLW Trigger: CCACAGACCGATGCAATGGATCCAGAACCTCTCAGCCAAGTCCCAAAGAGAAAGAGAAGACGCAAAGCAGCAGTTGGTGCCAGCATGCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS-3UTR CAA 90 bp | GTTAGGCTGGGTTGTGTGGAGCTGGAGAAGAGCTTGACCTCAGGTCCCAAATGCTTCAGGTTCTGGAAGTaGCTGGAATACACCAACCCC | + |
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Preference number: 5 (lower is better) Translates to: VRLGCVELEKSLTSGPKCFRFWK*LEYTNP Trigger: GGGGTTGGTGTATTCCAGCAACTTCCAGAACCTGAA...GCATTTGGGACCTGAGGTCAAGCTCTTCTCCAGCTCCACACAACCCAGCCTAAC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS-3UTR CAA 90 bp | CCCTTTGTGACTGGGATTGAATGTTTTATGGCAGGGGTTAGGCTGGGTTGTGTGAGGTCTGGAGCTCTCTaGCAACAGGTCCTCATTTCG | + |
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Preference number: 5 (lower is better) Translates to: PFVTGIECFMAGVRLGCVRSGAL*QQVLIS Trigger: CGAAATGAGGACCTGTTGCAAGAGAGCTCCAGACCT...CACACAACCCAGCCTAACCCCTGCCATAAAACATTCAATCCCAGTCACAAAGGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS-3UTR CAA 90 bp | GTGACTGGGATTGAATGTTTTATGGCAGGGGTTAGGCTGGGTTGTGTGGAGCTGCTTTCTCTTTGGGACTaGGCTGAGAGGTTCTGGATC | + |
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Preference number: 5 (lower is better) Translates to: VTGIECFMAGVRLGCVELLSLWD*AERFWI Trigger: GATCCAGAACCTCTCAGCCAAGTCCCAAAGAGAAAG...CAGCTCCACACAACCCAGCCTAACCCCTGCCATAAAACATTCAATCCCAGTCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS-3UTR CAA 90 bp | GTCTGTGCAGGAAATACAAGAAGCTCAGGCAGCAAGGGATCCAAAAGAAAATGCAGGTCTGGAGCTCTCTaGCAACAGGTCCTCATTTCG | + |
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Preference number: 5 (lower is better) Translates to: VCAGNTRSSGSKGSKRKCRSGAL*QQVLIS Trigger: CGAAATGAGGACCTGTTGCAAGAGAGCTCCAGACCT...GCATTTTCTTTTGGATCCCTTGCTGCCTGAGCTTCTTGTATTTCCTGCACAGAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000202422.2 |
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| CDS TCA 72 bp | CTCGGTGAGGCCATGTGGGTAGGACAGGAGCCAACCTaGATGTCCCCGAGTTGTGCTGTAGAGCCTCCTGGA | + |
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Preference number: 6 (lower is better) Translates to: LGEAMWVGQEPT*MSPSCAVEPPG Trigger: TCCAGGAGGCTCTACAGCACAACTCGGGGACATTCAGGTTGGCTCCTGTCCTACCCACATGGCCTCACCGAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS GCA 72 bp | TCCTTGCTAGGTGTGCCTTCCCCATGTTCCTCCAGCTaGCGGCTCAGCATGCCAGAGCCACTACAAGAAGGA | + |
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Preference number: 6 (lower is better) Translates to: SLLGVPSPCSSS*RLSMPEPLQEG Trigger: TCCTTCTTGTAGTGGCTCTGGCATGCTGAGCCGGCAGCTGGAGGAACATGGGGAAGGCACACCTAGCAAGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS GCA 72 bp | TCTCTTTGGGACTTGGCTGAGAGGTTCTGGATCCATTaGATCGGTCTGTGGGGCTGGGGTTGGTACCACCTC | + |
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Preference number: 6 (lower is better) Translates to: SLWDLAERFWIH*IGLWGWGWYHL Trigger: GAGGTGGTACCAACCCCAGCCCCACAGACCGATGCAATGGATCCAGAACCTCTCAGCCAAGTCCCAAAGAGA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS CCA 72 bp | GAGAGGTTCTGGATCCATTGCATCGGTCTGTGGGGCTaGGGTTGGTACCACCTCTGCACGTTCAAACACAGC | + |
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Preference number: 6 (lower is better) Translates to: ERFWIHCIGLWG*GWYHLCTFKHS Trigger: GCTGTGTTTGAACGTGCAGAGGTGGTACCAACCCCAGCCCCACAGACCGATGCAATGGATCCAGAACCTCTC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS CAA 72 bp | GTGGGTAGGACAGGAGCCAACCTGAATGTCCCCGAGTaGTGCTGTAGAGCCTCCTGGACCACGTCTTCATTC | + |
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Preference number: 6 (lower is better) Translates to: VGRTGANLNVPE*CCRASWTTSSF Trigger: GAATGAAGACGTGGTCCAGGAGGCTCTACAGCACAACTCGGGGACATTCAGGTTGGCTCCTGTCCTACCCAC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS CCA 72 bp | TTGGCTGAGAGGTTCTGGATCCATTGCATCGGTCTGTaGGGCTGGGGTTGGTACCACCTCTGCACGTTCAAA | + |
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Preference number: 6 (lower is better) Translates to: LAERFWIHCIGL*GWGWYHLCTFK Trigger: TTTGAACGTGCAGAGGTGGTACCAACCCCAGCCCCACAGACCGATGCAATGGATCCAGAACCTCTCAGCCAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS CAA 72 bp | CACACCAGAGCGTACAACTGCTTCAGGTTCTGGAAGTaGCTGGAATACACCAACCCCTTGAGGGAGCCCTGG | + |
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Preference number: 6 (lower is better) Translates to: HTRAYNCFRFWK*LEYTNPLREPW Trigger: CCAGGGCTCCCTCAAGGGGTTGGTGTATTCCAGCAACTTCCAGAACCTGAAGCAGTTGTACGCTCTGGTGTG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000000940.15 ENSMUST00000170342.5 ENSMUST00000202422.2 |
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| CDS CCA 72 bp | ACCCCTTCCCCAGCAATAATTCATACACTAGCACCTTaGCAAGGTGCGGTCTCAGCTTCTTCTCGGCGCGAA | + |
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Preference number: 6 (lower is better) Translates to: TPSPAIIHTLAP*QGAVSASSRRE Trigger: TTCGCGCCGAGAAGAAGCTGAGACCGCACCTTGCCAAGGTGCTAGTGTATGAATTATTGCTGGGGAAGGGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000000940.15 ENSMUST00000202422.2 |
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| CDS CCA 72 bp | TCTTCTCTTTCTCTTTGGGACTTGGCTGAGAGGTTCTaGATCCATTGCATCGGTCTGTGGGGCTGGGGTTGG | + |
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Preference number: 6 (lower is better) Translates to: SSLSLWDLAERF*IHCIGLWGWGW Trigger: CCAACCCCAGCCCCACAGACCGATGCAATGGATCCAGAACCTCTCAGCCAAGTCCCAAAGAGAAAGAGAAGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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| CDS CCA 72 bp | ACTGCTGCTTTGCGTCTTCTCTTTCTCTTTGGGACTTaGCTGAGAGGTTCTGGATCCATTGCATCGGTCTGT | + |
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Preference number: 6 (lower is better) Translates to: TAALRLLFLFGT*LRGSGSIASVC Trigger: ACAGACCGATGCAATGGATCCAGAACCTCTCAGCCAAGTCCCAAAGAGAAAGAGAAGACGCAAAGCAGCAGT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000000940.15 |
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