RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NSUN3 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000050312

Ensembl transcript IDs: ENSMUST00000063089.12, ENSMUST00000143314.8, ENSMUST00000152553.2

Found 113 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp CGCGCGCGCGCTCGACTTTTATCCGTGGATTCAAGGGAAGGTGGGTaGGAGCTGGTAGCTCAGTCCATTCCTGGAACTAAGGCAGAGAAG +
Preference number: 1 (lower is better)
Translates to: RARARLLSVDSREGG*ELVAQSIPGTKAEK
Trigger: CTTCTCTGCCTTAGTTCCAGGAATGGACTGAGCTACCAGCTCCCACCCACCTTCCCTTGAATCCACGGATAAAAGTCGAGCGCGCGCGCG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR TCA 90 bp CTCCCTACATCATCCTTGAGGAGGGTCTTGCTAGGCAGCCAAGGCTaGCTTGAATTTATAATTCTTCCACCTCAGCCCCCAAAATGCTGT +
Preference number: 1 (lower is better)
Translates to: LPTSSLRRVLLGSQG*LEFIILPPQPPKCC
Trigger: ACAGCATTTTGGGGGCTGAGGTGGAAGAATTATAAATTCAAGTCAGCCTTGGCTGCCTAGCAAGACCCTCCTCAAGGATGATGTAGGGAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR TCA 90 bp GGTACGATGTTACTGTCGGAAGTTAAGACCTCGCTGATCACATCTTaGTTTTCAGCCTTGGAAAGCGTGCATGTAGAGTACACGAGGAGC +
Preference number: 1 (lower is better)
Translates to: GTMLLSEVKTSLITS*FSALESVHVEYTRS
Trigger: GCTCCTCGTGTACTCTACATGCACGCTTTCCAAGGCTGAAAATCAAGATGTGATCAGCGAGGTCTTAACTTCCGACAGTAACATCGTACC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143314.8
3UTR CCA 90 bp ACCAAAAGGCTGCATTTCTGGTCAGTAGGGGCAAATGTGAAGTCTTaGGAGAAAGTCCTTGCTATCCCACTAATATCCACAGGTACGATG +
Preference number: 1 (lower is better)
Translates to: TKRLHFWSVGANVKS*EKVLAIPLISTGTM
Trigger: CATCGTACCTGTGGATATTAGTGGGATAGCAAGGACTTTCTCCCAAGACTTCACATTTGCCCCTACTGACCAGAAATGCAGCCTTTTGGT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143314.8
3UTR TCA 90 bp AAACCATCTATATATCTCAGTTCTGGAGGACCTGATGTCCAGTTCTaGCTTCCCCATGCAACAGGTATGCACATGGTACGCAGACATACA +
Preference number: 1 (lower is better)
Translates to: KPSIYLSSGGPDVQF*LPHATGMHMVRRHT
Trigger: TGTATGTCTGCGTACCATGTGCATACCTGTTGCATGGGGAAGTCAGAACTGGACATCAGGTCCTCCAGAACTGAGATATATAGATGGTTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR GCA 90 bp CAAATGGGGAGAAATCAAGCTGGTGTCAACAGAGTCACTGCCCTCTaGAGTAAACAGAAGACAGTCCTTAACTTAACACAGAACAACTCC +
Preference number: 1 (lower is better)
Translates to: QMGRNQAGVNRVTAL*SKQKTVLNLTQNNS
Trigger: GGAGTTGTTCTGTGTTAAGTTAAGGACTGTCTTCTGTTTACTGCAGAGGGCAGTGACTCTGTTGACACCAGCTTGATTTCTCCCCATTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR CCA 90 bp TTTGAACATGGAGCGTCAACTAACACCTTGTCAAATGTTGCAGGCTaGGCATCTCCCATTTCTCTGCCATCCAATTCAGACACTTTAATT +
Preference number: 1 (lower is better)
Translates to: FEHGASTNTLSNVAG*ASPISLPSNSDTLI
Trigger: AATTAAAGTGTCTGAATTGGATGGCAGAGAAATGGGAGATGCCCAGCCTGCAACATTTGACAAGGTGTTAGTTGACGCTCCATGTTCAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143314.8
3UTR CCA 90 bp GAACATAATTTACCCTTTCAGTTTGTATTTGTGAATAAATGCAAATaGGGAGAAATCAAGCTGGTGTCAACAGAGTCACTGCCCTCTGCA +
Preference number: 1 (lower is better)
Translates to: EHNLPFQFVFVNKCK*GEIKLVSTESLPSA
Trigger: TGCAGAGGGCAGTGACTCTGTTGACACCAGCTTGATTTCTCCCCATTTGCATTTATTCACAAATACAAACTGAAAGGGTAAATTATGTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR-3UTR TCA 90 bp TCCCTCTCTCCTCCCTACATCATCCTTGAGGAGGGTCTTGCTAGGCAGCCAAGGGCCCCCAAAATGCTGTaGCTACAGGTGTGCAGTGCC +
Preference number: 2 (lower is better)
Translates to: SLSPPYIILEEGLARQPRAPKML*LQVCSA
Trigger: GGCACTGCACACCTGTAGTCACAGCATTTTGGGGGC...CCTTGGCTGCCTAGCAAGACCCTCCTCAAGGATGATGTAGGGAGGAGAGAGGGA
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR-3UTR CCA 90 bp TCCCTCTCTCCTCCCTACATCATCCTTGAGGAGGGTCTTGCTAGGCAGCCAAGGTCAAGGGAAGGTGGGTaGGAGCTGGTAGCTCAGTCC +
Preference number: 2 (lower is better)
Translates to: SLSPPYIILEEGLARQPRSREGG*ELVAQS
Trigger: GGACTGAGCTACCAGCTCCCACCCACCTTCCCTTGA...CCTTGGCTGCCTAGCAAGACCCTCCTCAAGGATGATGTAGGGAGGAGAGAGGGA
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR-3UTR GCA 90 bp GGGGTGGCCACACAGGCTGCTCTTATAGACCGGTGGTCAGGGGAGTTTAGCAGCCACCTTGTCAAATGTTaGAGGCTGGGCATCTCCCAT +
Preference number: 2 (lower is better)
Translates to: GVATQAALIDRWSGEFSSHLVKC*RLGISH
Trigger: ATGGGAGATGCCCAGCCTGCAACATTTGACAAGGTG...GCTGCTAAACTCCCCTGACCACCGGTCTATAAGAGCAGCCTGTGTGGCCACCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143314.8
3UTR-3UTR CCA 90 bp GGGGTGGCCACACAGGCTGCTCTTATAGACCGGTGGTCAGGGGAGTTTAGCAGCAGAGACAGAGTTTGCTaGTCTTCTGATGGAGAAAAG +
Preference number: 2 (lower is better)
Translates to: GVATQAALIDRWSGEFSSRDRVC*SSDGEK
Trigger: CTTTTCTCCATCAGAAGACCAGCAAACTCTGTCTCT...GCTGCTAAACTCCCCTGACCACCGGTCTATAAGAGCAGCCTGTGTGGCCACCCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR-3UTR TCA 90 bp GGGGTGGCCACACAGGCTGCTCTTATAGACCGGTGGTCAGGGGAGTTTAGCAGCACAACTAACACGTGGTaGGCTCAGAAAATATGCATT +
Preference number: 2 (lower is better)
Translates to: GVATQAALIDRWSGEFSSTTNTW*AQKICI
Trigger: AATGCATATTTTCTGAGCTCACCACGTGTTAGTTGT...GCTGCTAAACTCCCCTGACCACCGGTCTATAAGAGCAGCCTGTGTGGCCACCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR-3UTR TCA 90 bp TCCCTCTCTCCTCCCTACATCATCCTTGAGGAGGGTCTTGCTAGGCAGCCAAGGCAGAAGACGAGCTTTTaGTTCCAAGCACCTATATGG +
Preference number: 2 (lower is better)
Translates to: SLSPPYIILEEGLARQPRQKTSF*FQAPIW
Trigger: CCATATAGGTGCTTGGAATCAAAAGCTCGTCTTCTG...CCTTGGCTGCCTAGCAAGACCCTCCTCAAGGATGATGTAGGGAGGAGAGAGGGA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR-3UTR TCA 90 bp TCCCTCTCTCCTCCCTACATCATCCTTGAGGAGGGTCTTGCTAGGCAGCCAAGGTCCTCAATTGGTTCTTaGTCTGTCAGTAAAGAAGCC +
Preference number: 2 (lower is better)
Translates to: SLSPPYIILEEGLARQPRSSIGS*SVSKEA
Trigger: GGCTTCTTTACTGACAGATCAAGAACCAATTGAGGA...CCTTGGCTGCCTAGCAAGACCCTCCTCAAGGATGATGTAGGGAGGAGAGAGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR-3UTR CCA 90 bp CAGACACAAGGAAGGAGAGACAGAGTTTGCTGGTCTTCTGATGGAGAAAAGTTGTCAAGGGAAGGTGGGTaGGAGCTGGTAGCTCAGTCC +
Preference number: 2 (lower is better)
Translates to: QTQGRRDRVCWSSDGEKLSREGG*ELVAQS
Trigger: GGACTGAGCTACCAGCTCCCACCCACCTTCCCTTGA...CAACTTTTCTCCATCAGAAGACCAGCAAACTCTGTCTCTCCTTCCTTGTGTCTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR-3UTR TCA 90 bp ATCAAGCTGGTGTCAACAGAGTCACTGCCCTCTGCAGTAAACAGAAGACAGTCCAGTTGTCCAGCCATGTaGGATCTCAAAATGGGGTGG +
Preference number: 2 (lower is better)
Translates to: IKLVSTESLPSAVNRRQSSCPAM*DLKMGW
Trigger: CCACCCCATTTTGAGATCTCACATGGCTGGACAACT...GGACTGTCTTCTGTTTACTGCAGAGGGCAGTGACTCTGTTGACACCAGCTTGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR-3UTR TCA 90 bp CTGACTTCCCCATGCAACAGGTATGCACATGGTACGCAGACATACATGTTGCCAAGTTGTCCAGCCATGTaGGATCTCAAAATGGGGTGG +
Preference number: 2 (lower is better)
Translates to: LTSPCNRYAHGTQTYMLPSCPAM*DLKMGW
Trigger: CCACCCCATTTTGAGATCTCACATGGCTGGACAACT...TGGCAACATGTATGTCTGCGTACCATGTGCATACCTGTTGCATGGGGAAGTCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR-3UTR GCA 90 bp TCCCTCTCTCCTCCCTACATCATCCTTGAGGAGGGTCTTGCTAGGCAGCCAAGGTGGTTTTGTTTCAAGTaGTTGCTTTATAGCCTGCTG +
Preference number: 2 (lower is better)
Translates to: SLSPPYIILEEGLARQPRWFCFK*LLYSLL
Trigger: CAGCAGGCTATAAAGCAAGCACTTGAAACAAAACCA...CCTTGGCTGCCTAGCAAGACCCTCCTCAAGGATGATGTAGGGAGGAGAGAGGGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR-3UTR CCA 90 bp TCCCTCTCTCCTCCCTACATCATCCTTGAGGAGGGTCTTGCTAGGCAGCCAAGGGTGAATAAATGCAAATaGGGAGAAATCAAGCTGGTG +
Preference number: 2 (lower is better)
Translates to: SLSPPYIILEEGLARQPRVNKCK*GEIKLV
Trigger: CACCAGCTTGATTTCTCCCCATTTGCATTTATTCAC...CCTTGGCTGCCTAGCAAGACCCTCCTCAAGGATGATGTAGGGAGGAGAGAGGGA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR CAA 90 bp AGGCAGCTTTCTGAGAGTCCGACGAGAACAGCCAGCTTCGATCATTaGAACATGGAGCGTCAACTAACACCTTGTCAAATGTTGCAGGCT +
Preference number: 2 (lower is better)
Translates to: RQLSESPTRTASFDH*NMERQLTPCQMLQA
Trigger: AGCCTGCAACATTTGACAAGGTGTTAGTTGACGCTCCATGTTCAAATGATCGAAGCTGGCTGTTCTCGTCGGACTCTCAGAAAGCTGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143314.8
3UTR CAA 90 bp CAGGCGGGAGATAACAGCATGCAGCAATTGTGCCAAGAAGGTAAGTaGAAAAGGAATAGCCGTGTGATGTGTGTGTGTGTGTGTGTGTGT +
Preference number: 2 (lower is better)
Translates to: QAGDNSMQQLCQEGK*KRNSRVMCVCVCVC
Trigger: ACACACACACACACACACACACATCACACGGCTATTCCTTTTCAACTTACCTTCTTGGCACAATTGCTGCATGCTGTTATCTCCCGCCTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR CAA 90 bp CACCAAAAGGCTGCATTTCTGGTCAGTAGGGGCAAATGTGAAGTCTaGGGAGAAAGTCCTTGCTATCCCACTAATATCCACAGGTACGAT +
Preference number: 2 (lower is better)
Translates to: HQKAAFLVSRGKCEV*GESPCYPTNIHRYD
Trigger: ATCGTACCTGTGGATATTAGTGGGATAGCAAGGACTTTCTCCCAAGACTTCACATTTGCCCCTACTGACCAGAAATGCAGCCTTTTGGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143314.8
3UTR-3UTR TCA 90 bp CTGGTGTCAACAGAGTCACTGCCCTCTGCAGTAAACAGAAGACAGTCCTTAACTAGTTTGCTGGTCTTCTaGTGGAGAAAAGTTGTCCAG +
Preference number: 2 (lower is better)
Translates to: LVSTESLPSAVNRRQSLTSLLVF*WRKVVQ
Trigger: CTGGACAACTTTTCTCCATCAGAAGACCAGCAAACT...AGTTAAGGACTGTCTTCTGTTTACTGCAGAGGGCAGTGACTCTGTTGACACCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR-3UTR GCA 90 bp ATCAAGCTGGTGTCAACAGAGTCACTGCCCTCTGCAGTAAACAGAAGACAGTCCATGTCGAAAGTCAAATaGGTGCGTGTGAATCTGTTG +
Preference number: 2 (lower is better)
Translates to: IKLVSTESLPSAVNRRQSMSKVK*VRVNLL
Trigger: CAACAGATTCACACGCACGCATTTGACTTTCGACAT...GGACTGTCTTCTGTTTACTGCAGAGGGCAGTGACTCTGTTGACACCAGCTTGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR-3UTR CCA 90 bp GACTTCCCCATGCAACAGGTATGCACATGGTACGCAGACATACATGTTGCCAAGAGAGACCACTCTGAATaGTTTGGGGTCTTGGTAATA +
Preference number: 2 (lower is better)
Translates to: DFPMQQVCTWYADIHVAKRDHSE*FGVLVI
Trigger: TATTACCAAGACCCCAAACCATTCAGAGTGGTCTCT...CTTGGCAACATGTATGTCTGCGTACCATGTGCATACCTGTTGCATGGGGAAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR-3UTR CCA 90 bp CAGACACAAGGAAGGAGAGACAGAGTTTGCTGGTCTTCTGATGGAGAAAAGTTGTCAAATGTTGCAGGCTaGGCATCTCCCATTTCTCTG +
Preference number: 2 (lower is better)
Translates to: QTQGRRDRVCWSSDGEKLSNVAG*ASPISL
Trigger: CAGAGAAATGGGAGATGCCCAGCCTGCAACATTTGA...CAACTTTTCTCCATCAGAAGACCAGCAAACTCTGTCTCTCCTTCCTTGTGTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143314.8
3UTR-3UTR CCA 90 bp ATCAAGCTGGTGTCAACAGAGTCACTGCCCTCTGCAGTAAACAGAAGACAGTCCGCAAATGTGAAGTCTTaGGAGAAAGTCCTTGCTATC +
Preference number: 2 (lower is better)
Translates to: IKLVSTESLPSAVNRRQSANVKS*EKVLAI
Trigger: GATAGCAAGGACTTTCTCCCAAGACTTCACATTTGC...GGACTGTCTTCTGTTTACTGCAGAGGGCAGTGACTCTGTTGACACCAGCTTGAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143314.8
3UTR-3UTR GCA 90 bp ATCAAGCTGGTGTCAACAGAGTCACTGCCCTCTGCAGTAAACAGAAGACAGTCCAGCATGCAGCAATTGTaGCAAGAAGGTAAGTTGAAA +
Preference number: 2 (lower is better)
Translates to: IKLVSTESLPSAVNRRQSSMQQL*QEGKLK
Trigger: TTTCAACTTACCTTCTTGGCACAATTGCTGCATGCT...GGACTGTCTTCTGTTTACTGCAGAGGGCAGTGACTCTGTTGACACCAGCTTGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR-3UTR GCA 90 bp CTGACTTCCCCATGCAACAGGTATGCACATGGTACGCAGACATACATGTTGCCAGCTTGCTTTATAGCCTaGTGGATAGACTCCATTATT +
Preference number: 2 (lower is better)
Translates to: LTSPCNRYAHGTQTYMLPACFIA*WIDSII
Trigger: AATAATGGAGTCTATCCAGCAGGCTATAAAGCAAGC...TGGCAACATGTATGTCTGCGTACCATGTGCATACCTGTTGCATGGGGAAGTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR-3UTR GCA 90 bp AATCAAGCTGGTGTCAACAGAGTCACTGCCCTCTGCAGTAAACAGAAGACAGTCCATCTCCCATTTCTCTaGCATCCAATTCAGACACTT +
Preference number: 2 (lower is better)
Translates to: NQAGVNRVTALCSKQKTVHLPFL*HPIQTL
Trigger: AAGTGTCTGAATTGGATGGCAGAGAAATGGGAGATG...GACTGTCTTCTGTTTACTGCAGAGGGCAGTGACTCTGTTGACACCAGCTTGATT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143314.8
3UTR-3UTR TCA 90 bp CTGACTTCCCCATGCAACAGGTATGCACATGGTACGCAGACATACATGTTGCCACATTATTCTACAAGCTaGATGTCGAAAGTCAAATGC +
Preference number: 2 (lower is better)
Translates to: LTSPCNRYAHGTQTYMLPHYSTS*MSKVKC
Trigger: GCATTTGACTTTCGACATTCAGCTTGTAGAATAATG...TGGCAACATGTATGTCTGCGTACCATGTGCATACCTGTTGCATGGGGAAGTCAG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR-3UTR CCA 90 bp GACTTCCCCATGCAACAGGTATGCACATGGTACGCAGACATACATGTTGCCAAGATTTATCAAAGGCTGTaGGATGAAAGATTCCAACGT +
Preference number: 2 (lower is better)
Translates to: DFPMQQVCTWYADIHVAKIYQRL*DERFQR
Trigger: ACGTTGGAATCTTTCATCCCACAGCCTTTGATAAAT...CTTGGCAACATGTATGTCTGCGTACCATGTGCATACCTGTTGCATGGGGAAGTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143314.8
3UTR-3UTR CCA 90 bp GCGGGAGATAACAGCATGCAGCAATTGTGCCAAGAAGGTAAGTTGAAAAGGAATAAAAGGCTGCATTTCTaGTCAGTAGGGGCAAATGTG +
Preference number: 2 (lower is better)
Translates to: AGDNSMQQLCQEGKLKRNKRLHF*SVGANV
Trigger: CACATTTGCCCCTACTGACCAGAAATGCAGCCTTTT...ATTCCTTTTCAACTTACCTTCTTGGCACAATTGCTGCATGCTGTTATCTCCCGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000143314.8
3UTR-3UTR GCA 90 bp CAGACACAAGGAAGGAGAGACAGAGTTTGCTGGTCTTCTGATGGAGAAAAGTTGAGCATGCAGCAATTGTaGCAAGAAGGTAAGTTGAAA +
Preference number: 2 (lower is better)
Translates to: QTQGRRDRVCWSSDGEKLSMQQL*QEGKLK
Trigger: TTTCAACTTACCTTCTTGGCACAATTGCTGCATGCT...CAACTTTTCTCCATCAGAAGACCAGCAAACTCTGTCTCTCCTTCCTTGTGTCTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR-3UTR GCA 90 bp GAAGACGAGCTTTTGATTCCAAGCACCTATATGGTGGTTCAAAACCATCTATATGTGATTTTTCTCTCCTaGTCTAGCCTTCCCCCTTCC +
Preference number: 2 (lower is better)
Translates to: EDELLIPSTYMVVQNHLYVIFLS*SSLPPS
Trigger: GGAAGGGGGAAGGCTAGAGCAGGAGAGAAAAATCAC...ATATAGATGGTTTTGAACCACCATATAGGTGCTTGGAATCAAAAGCTCGTCTTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR-3UTR TCA 90 bp GAAGACGAGCTTTTGATTCCAAGCACCTATATGGTGGTTCAAAACCATCTATATTCAAAGGCTGTGGGATaGAAGATTCCAACGTCTGTC +
Preference number: 2 (lower is better)
Translates to: EDELLIPSTYMVVQNHLYSKAVG*KIPTSV
Trigger: GACAGACGTTGGAATCTTTCATCCCACAGCCTTTGA...ATATAGATGGTTTTGAACCACCATATAGGTGCTTGGAATCAAAAGCTCGTCTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143314.8
3UTR-3UTR GCA 90 bp GAAGACGAGCTTTTGATTCCAAGCACCTATATGGTGGTTCAAAACCATCTATATAGAGTCACTGCCCTCTaGAGTAAACAGAAGACAGTC +
Preference number: 2 (lower is better)
Translates to: EDELLIPSTYMVVQNHLYRVTAL*SKQKTV
Trigger: GACTGTCTTCTGTTTACTGCAGAGGGCAGTGACTCT...ATATAGATGGTTTTGAACCACCATATAGGTGCTTGGAATCAAAAGCTCGTCTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR-3UTR GCA 90 bp ATAGCTCAGCAGTTAACAGCACTTGTTGCTTATACAGAAGACGAGCTTTTGATTAGAGTCACTGCCCTCTaGAGTAAACAGAAGACAGTC +
Preference number: 2 (lower is better)
Translates to: IAQQLTALVAYTEDELLIRVTAL*SKQKTV
Trigger: GACTGTCTTCTGTTTACTGCAGAGGGCAGTGACTCT...AATCAAAAGCTCGTCTTCTGTATAAGCAACAAGTGCTGTTAACTGCTGAGCTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR-3UTR GCA 90 bp AATCAAGCTGGTGTCAACAGAGTCACTGCCCTCTGCAGTAAACAGAAGACAGTCTTACAAAATTCGCCTTaGCTTTTTCTTGTACTCATC +
Preference number: 2 (lower is better)
Translates to: NQAGVNRVTALCSKQKTVLQNSP*LFLVLI
Trigger: GATGAGTACAAGAAAAAGGCAAGGCGAATTTTGTAA...GACTGTCTTCTGTTTACTGCAGAGGGCAGTGACTCTGTTGACACCAGCTTGATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000143314.8
3UTR-3UTR GCA 90 bp ATAGCCTGCTGGATAGACTCCATTATTCTACAAGCTGAATGTCGAAAGTCAAATAGGAGAGACAGAGTTTaGTGGTCTTCTGATGGAGAA +
Preference number: 2 (lower is better)
Translates to: IACWIDSIILQAECRKSNRRDRV*WSSDGE
Trigger: TTCTCCATCAGAAGACCAGCAAACTCTGTCTCTCCT...ATTTGACTTTCGACATTCAGCTTGTAGAATAATGGAGTCTATCCAGCAGGCTAT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR-3UTR GCA 90 bp GAAGACGAGCTTTTGATTCCAAGCACCTATATGGTGGTTCAAAACCATCTATATAGGAGAGACAGAGTTTaGTGGTCTTCTGATGGAGAA +
Preference number: 2 (lower is better)
Translates to: EDELLIPSTYMVVQNHLYRRDRV*WSSDGE
Trigger: TTCTCCATCAGAAGACCAGCAAACTCTGTCTCTCCT...ATATAGATGGTTTTGAACCACCATATAGGTGCTTGGAATCAAAAGCTCGTCTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR CAA 90 bp GCTCAGCAGTTAACAGCACTTGTTGCTTATACAGAAGACGAGCTTTaGATTCCAAGCACCTATATGGTGGTTCAAAACCATCTATATATC +
Preference number: 2 (lower is better)
Translates to: AQQLTALVAYTEDEL*IPSTYMVVQNHLYI
Trigger: GATATATAGATGGTTTTGAACCACCATATAGGTGCTTGGAATCAAAAGCTCGTCTTCTGTATAAGCAACAAGTGCTGTTAACTGCTGAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR-3UTR GCA 90 bp AGACACAAGGAAGGAGAGACAGAGTTTGCTGGTCTTCTGATGGAGAAAAGTTGTCCTACTAAAAGATTCTaGAGATTTGATGAGGAAACA +
Preference number: 2 (lower is better)
Translates to: RHKEGETEFAGLLMEKSCPTKRF*RFDEET
Trigger: TGTTTCCTCATCAAATCTGCAGAATCTTTTAGTAGG...ACAACTTTTCTCCATCAGAAGACCAGCAAACTCTGTCTCTCCTTCCTTGTGTCT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR-3UTR CCA 90 bp GAAGACGAGCTTTTGATTCCAAGCACCTATATGGTGGTTCAAAACCATCTATATAGAGACAGAGTTTGCTaGTCTTCTGATGGAGAAAAG +
Preference number: 2 (lower is better)
Translates to: EDELLIPSTYMVVQNHLYRDRVC*SSDGEK
Trigger: CTTTTCTCCATCAGAAGACCAGCAAACTCTGTCTCT...ATATAGATGGTTTTGAACCACCATATAGGTGCTTGGAATCAAAAGCTCGTCTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR CAA 90 bp GTCCTTAACTTAACACAGAACAACTCCGCAAACAAGAAACCTATTTaGCTAGAACTAGAAATTGTGCTGCTTAAGAAGTTAGCCTCCGAA +
Preference number: 2 (lower is better)
Translates to: VLNLTQNNSANKKPI*LELEIVLLKKLASE
Trigger: TTCGGAGGCTAACTTCTTAAGCAGCACAATTTCTAGTTCTAGCAAAATAGGTTTCTTGTTTGCGGAGTTGTTCTGTGTTAAGTTAAGGAC
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR-3UTR TCA 90 bp GAAATTGTGCTGCTTAAGAAGTTAGCCTCCGAATACCAATTATTCCTACTAAAATCGCTGATCACATCTTaGTTTTCAGCCTTGGAAAGC +
Preference number: 2 (lower is better)
Translates to: EIVLLKKLASEYQLFLLKSLITS*FSALES
Trigger: GCTTTCCAAGGCTGAAAATCAAGATGTGATCAGCGA...TTTTAGTAGGAATAATTGGTATTCGGAGGCTAACTTCTTAAGCAGCACAATTTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000143314.8
3UTR-3UTR TCA 90 bp GAAATTGTGCTGCTTAAGAAGTTAGCCTCCGAATACCAATTATTCCTACTAAAAACAACTAACACGTGGTaGGCTCAGAAAATATGCATT +
Preference number: 2 (lower is better)
Translates to: EIVLLKKLASEYQLFLLKTTNTW*AQKICI
Trigger: AATGCATATTTTCTGAGCTCACCACGTGTTAGTTGT...TTTTAGTAGGAATAATTGGTATTCGGAGGCTAACTTCTTAAGCAGCACAATTTC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR CCA 72 bp GCTCGACTTTTATCCGTGGATTCAAGGGAAGGTGGGTaGGAGCTGGTAGCTCAGTCCATTCCTGGAACTAAG +
Preference number: 3 (lower is better)
Translates to: ARLLSVDSREGG*ELVAQSIPGTK
Trigger: CTTAGTTCCAGGAATGGACTGAGCTACCAGCTCCCACCCACCTTCCCTTGAATCCACGGATAAAAGTCGAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR-3UTR CAA 90 bp TCCCTCTCTCCTCCCTACATCATCCTTGAGGAGGGTCTTGCTAGGCAGCCAAGGTGTCCTGTTCCTCAATaGGTTCTTGATCTGTCAGTA +
Preference number: 3 (lower is better)
Translates to: SLSPPYIILEEGLARQPRCPVPQ*VLDLSV
Trigger: TACTGACAGATCAAGAACCAATTGAGGAACAGGACA...CCTTGGCTGCCTAGCAAGACCCTCCTCAAGGATGATGTAGGGAGGAGAGAGGGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR TCA 72 bp TCATCCTTGAGGAGGGTCTTGCTAGGCAGCCAAGGCTaGCTTGAATTTATAATTCTTCCACCTCAGCCCCCA +
Preference number: 3 (lower is better)
Translates to: SSLRRVLLGSQG*LEFIILPPQPP
Trigger: TGGGGGCTGAGGTGGAAGAATTATAAATTCAAGTCAGCCTTGGCTGCCTAGCAAGACCCTCCTCAAGGATGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR CCA 72 bp GGAGCGTCAACTAACACCTTGTCAAATGTTGCAGGCTaGGCATCTCCCATTTCTCTGCCATCCAATTCAGAC +
Preference number: 3 (lower is better)
Translates to: GASTNTLSNVAG*ASPISLPSNSD
Trigger: GTCTGAATTGGATGGCAGAGAAATGGGAGATGCCCAGCCTGCAACATTTGACAAGGTGTTAGTTGACGCTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143314.8
3UTR-3UTR CAA 90 bp CTGGTGTCAACAGAGTCACTGCCCTCTGCAGTAAACAGAAGACAGTCCTTAACTTGCCAAGAAGGTAAGTaGAAAAGGAATAGCCGTGTG +
Preference number: 3 (lower is better)
Translates to: LVSTESLPSAVNRRQSLTCQEGK*KRNSRV
Trigger: CACACGGCTATTCCTTTTCAACTTACCTTCTTGGCA...AGTTAAGGACTGTCTTCTGTTTACTGCAGAGGGCAGTGACTCTGTTGACACCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR TCA 72 bp CAGGTACGATGTTACTGTCGGAAGTTAAGACCTCGCTaGTCACATCTTGATTTTCAGCCTTGGAAAGCGTGC +
Preference number: 3 (lower is better)
Translates to: QVRCYCRKLRPR*SHLDFQPWKAC
Trigger: GCACGCTTTCCAAGGCTGAAAATCAAGATGTGATCAGCGAGGTCTTAACTTCCGACAGTAACATCGTACCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143314.8
3UTR GCA 72 bp CTTGAATTTATAATTCTTCCACCTCAGCCCCCAAAATaGTGTGACTACAGGTGTGCAGTGCCATGTCTGCCA +
Preference number: 3 (lower is better)
Translates to: LEFIILPPQPPK*CDYRCAVPCLP
Trigger: TGGCAGACATGGCACTGCACACCTGTAGTCACAGCATTTTGGGGGCTGAGGTGGAAGAATTATAAATTCAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR GCA 72 bp CTGATGTCCAGTTCTGACTTCCCCATGCAACAGGTATaGACATGGTACGCAGACATACATGTTGCCAAGATA +
Preference number: 3 (lower is better)
Translates to: LMSSSDFPMQQV*TWYADIHVAKI
Trigger: TATCTTGGCAACATGTATGTCTGCGTACCATGTGCATACCTGTTGCATGGGGAAGTCAGAACTGGACATCAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR GCA 72 bp TTTTTCCAGGCGGGAGATAACAGCATGCAGCAATTGTaGCAAGAAGGTAAGTTGAAAAGGAATAGCCGTGTG +
Preference number: 3 (lower is better)
Translates to: FFQAGDNSMQQL*QEGKLKRNSRV
Trigger: CACACGGCTATTCCTTTTCAACTTACCTTCTTGGCACAATTGCTGCATGCTGTTATCTCCCGCCTGGAAAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR GCA 72 bp AGAAATCAAGCTGGTGTCAACAGAGTCACTGCCCTCTaGAGTAAACAGAAGACAGTCCTTAACTTAACACAG +
Preference number: 3 (lower is better)
Translates to: RNQAGVNRVTAL*SKQKTVLNLTQ
Trigger: CTGTGTTAAGTTAAGGACTGTCTTCTGTTTACTGCAGAGGGCAGTGACTCTGTTGACACCAGCTTGATTTCT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR TCA 72 bp TATAGCCTGCTGGATAGACTCCATTATTCTACAAGCTaGATGTCGAAAGTCAAATGCGTGCGTGTGAATCTG +
Preference number: 3 (lower is better)
Translates to: YSLLDRLHYSTS*MSKVKCVRVNL
Trigger: CAGATTCACACGCACGCATTTGACTTTCGACATTCAGCTTGTAGAATAATGGAGTCTATCCAGCAGGCTATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR TCA 72 bp TTCAAAACCATCTATATATCTCAGTTCTGGAGGACCTaGTGTCCAGTTCTGACTTCCCCATGCAACAGGTAT +
Preference number: 3 (lower is better)
Translates to: FKTIYISQFWRT*CPVLTSPCNRY
Trigger: ATACCTGTTGCATGGGGAAGTCAGAACTGGACATCAGGTCCTCCAGAACTGAGATATATAGATGGTTTTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR CCA 72 bp TCCAGTTCTGACTTCCCCATGCAACAGGTATGCACATaGTACGCAGACATACATGTTGCCAAGATATTTATA +
Preference number: 3 (lower is better)
Translates to: SSSDFPMQQVCT*YADIHVAKIFI
Trigger: TATAAATATCTTGGCAACATGTATGTCTGCGTACCATGTGCATACCTGTTGCATGGGGAAGTCAGAACTGGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR-3UTR CAA 90 bp GAAGACGAGCTTTTGATTCCAAGCACCTATATGGTGGTTCAAAACCATCTATATAGAAGCCATAGCCAATaGTGGGGAGGAAGGAATAAG +
Preference number: 3 (lower is better)
Translates to: EDELLIPSTYMVVQNHLYRSHSQ*WGGRNK
Trigger: CTTATTCCTTCCTCCCCACAATTGGCTATGGCTTCT...ATATAGATGGTTTTGAACCACCATATAGGTGCTTGGAATCAAAAGCTCGTCTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR-3UTR CAA 90 bp GAAATTGTGCTGCTTAAGAAGTTAGCCTCCGAATACCAATTATTCCTACTAAAAACACCTTGTCAAATGTaGCAGGCTGGGCATCTCCCA +
Preference number: 3 (lower is better)
Translates to: EIVLLKKLASEYQLFLLKTPCQM*QAGHLP
Trigger: TGGGAGATGCCCAGCCTGCAACATTTGACAAGGTGT...TTTTAGTAGGAATAATTGGTATTCGGAGGCTAACTTCTTAAGCAGCACAATTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000143314.8
3UTR-3UTR CAA 90 bp ATAGCTCAGCAGTTAACAGCACTTGTTGCTTATACAGAAGACGAGCTTTTGATTGCCAGCTTCGATCATTaGAACATGGAGCGTCAACTA +
Preference number: 3 (lower is better)
Translates to: IAQQLTALVAYTEDELLIASFDH*NMERQL
Trigger: TAGTTGACGCTCCATGTTCAAATGATCGAAGCTGGC...AATCAAAAGCTCGTCTTCTGTATAAGCAACAAGTGCTGTTAACTGCTGAGCTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000143314.8
3UTR-3UTR CAA 90 bp GAAGACGAGCTTTTGATTCCAAGCACCTATATGGTGGTTCAAAACCATCTATATTGCCAAGAAGGTAAGTaGAAAAGGAATAGCCGTGTG +
Preference number: 3 (lower is better)
Translates to: EDELLIPSTYMVVQNHLYCQEGK*KRNSRV
Trigger: CACACGGCTATTCCTTTTCAACTTACCTTCTTGGCA...ATATAGATGGTTTTGAACCACCATATAGGTGCTTGGAATCAAAAGCTCGTCTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR-3UTR CAA 90 bp ATAGCCTGCTGGATAGACTCCATTATTCTACAAGCTGAATGTCGAAAGTCAAATTGTCCTGTTCCTCAATaGGTTCTTGATCTGTCAGTA +
Preference number: 3 (lower is better)
Translates to: IACWIDSIILQAECRKSNCPVPQ*VLDLSV
Trigger: TACTGACAGATCAAGAACCAATTGAGGAACAGGACA...ATTTGACTTTCGACATTCAGCTTGTAGAATAATGGAGTCTATCCAGCAGGCTAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR CCA 72 bp TCTGGTTTTGTTTCAAGTGCTTGCTTTATAGCCTGCTaGATAGACTCCATTATTCTACAAGCTGAATGTCGA +
Preference number: 3 (lower is better)
Translates to: SGFVSSACFIAC*IDSIILQAECR
Trigger: TCGACATTCAGCTTGTAGAATAATGGAGTCTATCCAGCAGGCTATAAAGCAAGCACTTGAAACAAAACCAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR GCA 72 bp AGCCTCCGAATACCAATTATTCCTACTAAAAGATTCTaGAGATTTGATGAGGAAACAGTAAAAGTGTTGACA +
Preference number: 3 (lower is better)
Translates to: SLRIPIIPTKRF*RFDEETVKVLT
Trigger: TGTCAACACTTTTACTGTTTCCTCATCAAATCTGCAGAATCTTTTAGTAGGAATAATTGGTATTCGGAGGCT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
CDS-3UTR CCA 90 bp GGGGTGGCCACACAGGCTGCTCTTATAGACCGGTGGTCAGGGGAGTTTAGCAGCCTCTGCATAGCTGTTTaGCAAGCTTCCCCTCTGATT +
Preference number: 4 (lower is better)
Translates to: GVATQAALIDRWSGEFSSLCIAV*QASPLI
Trigger: AATCAGAGGGGAAGCTTGCCAAACAGCTATGCAGAG...GCTGCTAAACTCCCCTGACCACCGGTCTATAAGAGCAGCCTGTGTGGCCACCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
CDS-3UTR TCA 90 bp GGGGTGGCCACACAGGCTGCTCTTATAGACCGGTGGTCAGGGGAGTTTAGCAGCTACTGTTTGTCAAACTaGTCCAACACAACTCTGCAT +
Preference number: 4 (lower is better)
Translates to: GVATQAALIDRWSGEFSSYCLSN*SNTTLH
Trigger: ATGCAGAGTTGTGTTGGATCAGTTTGACAAACAGTA...GCTGCTAAACTCCCCTGACCACCGGTCTATAAGAGCAGCCTGTGTGGCCACCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
CDS-3UTR GCA 90 bp CTGACTTCCCCATGCAACAGGTATGCACATGGTACGCAGACATACATGTTGCCAGCAGAGCTACGGATTTaGCTCCAGGAGCAGCACACA +
Preference number: 4 (lower is better)
Translates to: LTSPCNRYAHGTQTYMLPAELRI*LQEQHT
Trigger: TGTGTGCTGCTCCTGGAGGCAAATCCGTAGCTCTGC...TGGCAACATGTATGTCTGCGTACCATGTGCATACCTGTTGCATGGGGAAGTCAG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
CDS-3UTR GCA 90 bp GTTTGGCTATATACATTGGGCCCCAAGCTTTGCCCTTTTCCGGAATCACCAAAAGCAGAGCTACGGATTTaGCTCCAGGAGCAGCACACA +
Preference number: 4 (lower is better)
Translates to: VWLYTLGPKLCPFPESPKAELRI*LQEQHT
Trigger: TGTGTGCTGCTCCTGGAGGCAAATCCGTAGCTCTGC...TTTTGGTGATTCCGGAAAAGGGCAAAGCTTGGGGCCCAATGTATATAGCCAAAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000143314.8
CDS-3UTR TCA 90 bp AATCAAGCTGGTGTCAACAGAGTCACTGCCCTCTGCAGTAAACAGAAGACAGTCGGTCTGGGGTTCGGCTaGGGTAACACTTCATTGATT +
Preference number: 4 (lower is better)
Translates to: NQAGVNRVTALCSKQKTVGLGFG*GNTSLI
Trigger: AATCAATGAAGTGTTACCTCAGCCGAACCCCAGACC...GACTGTCTTCTGTTTACTGCAGAGGGCAGTGACTCTGTTGACACCAGCTTGATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063089.12
CDS-3UTR GCA 90 bp ATAGCCAATTGTGGGGAGGAAGGAATAAGTGAAACTTCCAGGTCCCTGAAGGAACACCTTGTCAAATGTTaGAGGCTGGGCATCTCCCAT +
Preference number: 4 (lower is better)
Translates to: IANCGEEGISETSRSLKEHLVKC*RLGISH
Trigger: ATGGGAGATGCCCAGCCTGCAACATTTGACAAGGTG...TTCCTTCAGGGACCTGGAAGTTTCACTTATTCCTTCCTCCCCACAATTGGCTAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063089.12
CDS-3UTR CCA 90 bp GACTTCCCCATGCAACAGGTATGCACATGGTACGCAGACATACATGTTGCCAAGTTTGGCTATATACATTaGGCCCCAAGCTTTGCCCTT +
Preference number: 4 (lower is better)
Translates to: DFPMQQVCTWYADIHVAKFGYIH*APSFAL
Trigger: AAGGGCAAAGCTTGGGGCCCAATGTATATAGCCAAA...CTTGGCAACATGTATGTCTGCGTACCATGTGCATACCTGTTGCATGGGGAAGTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000063089.12
CDS-3UTR GCA 90 bp AGGAGAGACAGAGTTTGCTGGTCTTCTGATGGAGAAAAGTTGTCCAGCCATGTGGATCCAACACAACTCTaGATAGCTGTTTGGCAAGCT +
Preference number: 4 (lower is better)
Translates to: RRDRVCWSSDGEKLSSHVDPTQL*IAVWQA
Trigger: AGCTTGCCAAACAGCTATGCAGAGTTGTGTTGGATC...CACATGGCTGGACAACTTTTCTCCATCAGAAGACCAGCAAACTCTGTCTCTCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR CAA 72 bp TCTGAGAGTCCGACGAGAACAGCCAGCTTCGATCATTaGAACATGGAGCGTCAACTAACACCTTGTCAAATG +
Preference number: 4 (lower is better)
Translates to: SESPTRTASFDH*NMERQLTPCQM
Trigger: CATTTGACAAGGTGTTAGTTGACGCTCCATGTTCAAATGATCGAAGCTGGCTGTTCTCGTCGGACTCTCAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000143314.8
CDS-3UTR GCA 90 bp ATAGCTCAGCAGTTAACAGCACTTGTTGCTTATACAGAAGACGAGCTTTTGATTACACAAGTCCAGGACTaGCTCCCCGTCTCTCAGTTC +
Preference number: 4 (lower is better)
Translates to: IAQQLTALVAYTEDELLITQVQD*LPVSQF
Trigger: GAACTGAGAGACGGGGAGGCAGTCCTGGACTTGTGT...AATCAAAAGCTCGTCTTCTGTATAAGCAACAAGTGCTGTTAACTGCTGAGCTAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
CDS-3UTR GCA 90 bp GAAGACGAGCTTTTGATTCCAAGCACCTATATGGTGGTTCAAAACCATCTATATACACAAGTCCAGGACTaGCTCCCCGTCTCTCAGTTC +
Preference number: 4 (lower is better)
Translates to: EDELLIPSTYMVVQNHLYTQVQD*LPVSQF
Trigger: GAACTGAGAGACGGGGAGGCAGTCCTGGACTTGTGT...ATATAGATGGTTTTGAACCACCATATAGGTGCTTGGAATCAAAAGCTCGTCTTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
CDS-3UTR CCA 90 bp AGACACAAGGAAGGAGAGACAGAGTTTGCTGGTCTTCTGATGGAGAAAAGTTGTAAAAGGCTGCATTTCTaGTCAGTAGGGGCAAATGTG +
Preference number: 4 (lower is better)
Translates to: RHKEGETEFAGLLMEKSCKRLHF*SVGANV
Trigger: CACATTTGCCCCTACTGACCAGAAATGCAGCCTTTT...ACAACTTTTCTCCATCAGAAGACCAGCAAACTCTGTCTCTCCTTCCTTGTGTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000063089.12
3UTR CAA 72 bp GATAACAGCATGCAGCAATTGTGCCAAGAAGGTAAGTaGAAAAGGAATAGCCGTGTGATGTGTGTGTGTGTG +
Preference number: 4 (lower is better)
Translates to: DNSMQQLCQEGK*KRNSRVMCVCV
Trigger: CACACACACACACATCACACGGCTATTCCTTTTCAACTTACCTTCTTGGCACAATTGCTGCATGCTGTTATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
3UTR CAA 72 bp ATGTTTTTCCAGGCGGGAGATAACAGCATGCAGCAATaGTGCCAAGAAGGTAAGTTGAAAAGGAATAGCCGT +
Preference number: 4 (lower is better)
Translates to: MFFQAGDNSMQQ*CQEGKLKRNSR
Trigger: ACGGCTATTCCTTTTCAACTTACCTTCTTGGCACAATTGCTGCATGCTGTTATCTCCCGCCTGGAAAAACAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
CDS-3UTR TCA 90 bp ATAGCTCAGCAGTTAACAGCACTTGTTGCTTATACAGAAGACGAGCTTTTGATTAGTCTGATGTCTTTCTaGAGGCATTCGGTCTGGGGT +
Preference number: 4 (lower is better)
Translates to: IAQQLTALVAYTEDELLISLMSF*RHSVWG
Trigger: ACCCCAGACCGAATGCCTTCAGAAAGACATCAGACT...AATCAAAAGCTCGTCTTCTGTATAAGCAACAAGTGCTGTTAACTGCTGAGCTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000063089.12
CDS-3UTR GCA 90 bp ATAGCCAATTGTGGGGAGGAAGGAATAAGTGAAACTTCCAGGTCCCTGAAGGAAAAGAGGATGGCATATTaGCATAGTGATGGAGATATC +
Preference number: 4 (lower is better)
Translates to: IANCGEEGISETSRSLKEKRMAY*HSDGDI
Trigger: GATATCTCCATCACTATGGCAATATGCCATCCTCTT...TTCCTTCAGGGACCTGGAAGTTTCACTTATTCCTTCCTCCCCACAATTGGCTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000063089.12
CDS-3UTR GCA 90 bp AGGAGAGACAGAGTTTGCTGGTCTTCTGATGGAGAAAAGTTGTCCAGCCATGTGTTACAAAATTCGCCTTaGCTTTTTCTTGTACTCATC +
Preference number: 4 (lower is better)
Translates to: RRDRVCWSSDGEKLSSHVLQNSP*LFLVLI
Trigger: GATGAGTACAAGAAAAAGGCAAGGCGAATTTTGTAA...CACATGGCTGGACAACTTTTCTCCATCAGAAGACCAGCAAACTCTGTCTCTCCT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000063089.12
CDS-3UTR CCA 90 bp ATAGCTCAGCAGTTAACAGCACTTGTTGCTTATACAGAAGACGAGCTTTTGATTCTCTGCATAGCTGTTTaGCAAGCTTCCCCTCTGATT +
Preference number: 4 (lower is better)
Translates to: IAQQLTALVAYTEDELLILCIAV*QASPLI
Trigger: AATCAGAGGGGAAGCTTGCCAAACAGCTATGCAGAG...AATCAAAAGCTCGTCTTCTGTATAAGCAACAAGTGCTGTTAACTGCTGAGCTAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
CDS-3UTR CCA 90 bp ATAGCCTGCTGGATAGACTCCATTATTCTACAAGCTGAATGTCGAAAGTCAAATTCAAATGTTGCAGGCTaGGCATCTCCCATTTCTCTG +
Preference number: 4 (lower is better)
Translates to: IACWIDSIILQAECRKSNSNVAG*ASPISL
Trigger: CAGAGAAATGGGAGATGCCCAGCCTGCAACATTTGA...ATTTGACTTTCGACATTCAGCTTGTAGAATAATGGAGTCTATCCAGCAGGCTAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063089.12
CDS-3UTR GCA 90 bp GAAGACGAGCTTTTGATTCCAAGCACCTATATGGTGGTTCAAAACCATCTATATGATCCAACACAACTCTaGATAGCTGTTTGGCAAGCT +
Preference number: 4 (lower is better)
Translates to: EDELLIPSTYMVVQNHLYDPTQL*IAVWQA
Trigger: AGCTTGCCAAACAGCTATGCAGAGTTGTGTTGGATC...ATATAGATGGTTTTGAACCACCATATAGGTGCTTGGAATCAAAAGCTCGTCTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
CDS-3UTR CCA 90 bp GAAGACGAGCTTTTGATTCCAAGCACCTATATGGTGGTTCAAAACCATCTATATGCAAATGTGAAGTCTTaGGAGAAAGTCCTTGCTATC +
Preference number: 4 (lower is better)
Translates to: EDELLIPSTYMVVQNHLYANVKS*EKVLAI
Trigger: GATAGCAAGGACTTTCTCCCAAGACTTCACATTTGC...ATATAGATGGTTTTGAACCACCATATAGGTGCTTGGAATCAAAAGCTCGTCTTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000063089.12
CDS-3UTR TCA 90 bp ATAGCTCAGCAGTTAACAGCACTTGTTGCTTATACAGAAGACGAGCTTTTGATTTACTGTTTGTCAAACTaGTCCAACACAACTCTGCAT +
Preference number: 4 (lower is better)
Translates to: IAQQLTALVAYTEDELLIYCLSN*SNTTLH
Trigger: ATGCAGAGTTGTGTTGGATCAGTTTGACAAACAGTA...AATCAAAAGCTCGTCTTCTGTATAAGCAACAAGTGCTGTTAACTGCTGAGCTAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
CDS-3UTR GCA 90 bp GAAATTGTGCTGCTTAAGAAGTTAGCCTCCGAATACCAATTATTCCTACTAAAACATCTCCCATTTCTCTaGCATCCAATTCAGACACTT +
Preference number: 4 (lower is better)
Translates to: EIVLLKKLASEYQLFLLKHLPFL*HPIQTL
Trigger: AAGTGTCTGAATTGGATGGCAGAGAAATGGGAGATG...TTTTAGTAGGAATAATTGGTATTCGGAGGCTAACTTCTTAAGCAGCACAATTTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063089.12
CDS-3UTR CCA 90 bp ATAGCCTGCTGGATAGACTCCATTATTCTACAAGCTGAATGTCGAAAGTCAAATATTTATCAAAGGCTGTaGGATGAAAGATTCCAACGT +
Preference number: 4 (lower is better)
Translates to: IACWIDSIILQAECRKSNIYQRL*DERFQR
Trigger: ACGTTGGAATCTTTCATCCCACAGCCTTTGATAAAT...ATTTGACTTTCGACATTCAGCTTGTAGAATAATGGAGTCTATCCAGCAGGCTAT
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063089.12
CDS-3UTR CAA 90 bp GGGGTGGCCACACAGGCTGCTCTTATAGACCGGTGGTCAGGGGAGTTTAGCAGCAGCAGAGCTACGGATTaGCCTCCAGGAGCAGCACAC +
Preference number: 5 (lower is better)
Translates to: GVATQAALIDRWSGEFSSSRATD*PPGAAH
Trigger: GTGTGCTGCTCCTGGAGGCAAATCCGTAGCTCTGCT...GCTGCTAAACTCCCCTGACCACCGGTCTATAAGAGCAGCCTGTGTGGCCACCCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
CDS GCA 90 bp CAGAGCTACGGATTTGCCTCCAGGAGCAGCACACAAGTCCAGGACTaGCTCCCCGTCTCTCAGTTCCAGAGCCAGTACTGGGAGAAGAGA +
Preference number: 5 (lower is better)
Translates to: QSYGFASRSSTQVQD*LPVSQFQSQYWEKR
Trigger: TCTCTTCTCCCAGTACTGGCTCTGGAACTGAGAGACGGGGAGGCAGTCCTGGACTTGTGTGCTGCTCCTGGAGGCAAATCCGTAGCTCTG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063089.12
CDS GCA 90 bp GGCTCTAAGGACCTGGATAAGCACATTGCAGCAGAGCTACGGATTTaGCTCCAGGAGCAGCACACAAGTCCAGGACTGCCTCCCCGTCTC +
Preference number: 5 (lower is better)
Translates to: GSKDLDKHIAAELRI*LQEQHTSPGLPPRL
Trigger: GAGACGGGGAGGCAGTCCTGGACTTGTGTGCTGCTCCTGGAGGCAAATCCGTAGCTCTGCTGCAATGTGCTTATCCAGGTCCTTAGAGCC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000152553.2
CDS GCA 90 bp CAGAGCTACGGATTTGCCTCCAGGAGCAGCACACAAGTCCAGGACTaGCTCCCCGTCTCTCAGTTCCAGAGCCAGTACTTACTGTACTCC +
Preference number: 5 (lower is better)
Translates to: QSYGFASRSSTQVQD*LPVSQFQSQYLLYS
Trigger: GGAGTACAGTAAGTACTGGCTCTGGAACTGAGAGACGGGGAGGCAGTCCTGGACTTGTGTGCTGCTCCTGGAGGCAAATCCGTAGCTCTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000143314.8
ENSMUST00000152553.2
CDS-3UTR CAA 90 bp GGGGTGGCCACACAGGCTGCTCTTATAGACCGGTGGTCAGGGGAGTTTAGCAGCACTCTGCATAGCTGTTaGGCAAGCTTCCCCTCTGAT +
Preference number: 5 (lower is better)
Translates to: GVATQAALIDRWSGEFSSTLHSC*ASFPSD
Trigger: ATCAGAGGGGAAGCTTGCCAAACAGCTATGCAGAGT...GCTGCTAAACTCCCCTGACCACCGGTCTATAAGAGCAGCCTGTGTGGCCACCCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
CDS GCA 90 bp AGAGAAGATAACCTGGATAAGCACATTGCAGCAGAGCTACGGATTTaGCTCCAGGAGCAGCACACAAGTCCAGGACTGCCTCCCCGTCTC +
Preference number: 5 (lower is better)
Translates to: REDNLDKHIAAELRI*LQEQHTSPGLPPRL
Trigger: GAGACGGGGAGGCAGTCCTGGACTTGTGTGCTGCTCCTGGAGGCAAATCCGTAGCTCTGCTGCAATGTGCTTATCCAGGTTATCTTCTCT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
CDS CCA 90 bp CAAGTCCAGGACTGCCTCCCCGTCTCTCAGTTCCAGAGCCAGTACTaGGAGAAGAGAAGCAGCATTAAGGAGGTAGTACTTTTTCAAGCT +
Preference number: 5 (lower is better)
Translates to: QVQDCLPVSQFQSQY*EKRSSIKEVVLFQA
Trigger: AGCTTGAAAAAGTACTACCTCCTTAATGCTGCTTCTCTTCTCCCAGTACTGGCTCTGGAACTGAGAGACGGGGAGGCAGTCCTGGACTTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000063089.12
CDS-3UTR CAA 90 bp CTGGTGTCAACAGAGTCACTGCCCTCTGCAGTAAACAGAAGACAGTCCTTAACTATTGGGCCCCAAGCTTaGCCCTTTTCCGGAATCACC +
Preference number: 5 (lower is better)
Translates to: LVSTESLPSAVNRRQSLTIGPQA*PFSGIT
Trigger: GGTGATTCCGGAAAAGGGCAAAGCTTGGGGCCCAAT...AGTTAAGGACTGTCTTCTGTTTACTGCAGAGGGCAGTGACTCTGTTGACACCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000063089.12
CDS-3UTR CAA 90 bp CTGGTGTCAACAGAGTCACTGCCCTCTGCAGTAAACAGAAGACAGTCCTTAACTGCTTCCCCTCTGATTTaGCTTTCAGCCGAGTCAGCA +
Preference number: 5 (lower is better)
Translates to: LVSTESLPSAVNRRQSLTASPLI*LSAESA
Trigger: TGCTGACTCGGCTGAAAGCAAAATCAGAGGGGAAGC...AGTTAAGGACTGTCTTCTGTTTACTGCAGAGGGCAGTGACTCTGTTGACACCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
CDS-3UTR CAA 90 bp GTTTGGCTATATACATTGGGCCCCAAGCTTTGCCCTTTTCCGGAATCACCAAAAGCTTCCCCTCTGATTTaGCTTTCAGCCGAGTCAGCA +
Preference number: 5 (lower is better)
Translates to: VWLYTLGPKLCPFPESPKASPLI*LSAESA
Trigger: TGCTGACTCGGCTGAAAGCAAAATCAGAGGGGAAGC...TTTTGGTGATTCCGGAAAAGGGCAAAGCTTGGGGCCCAATGTATATAGCCAAAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 1 transcripts:
ENSMUST00000143314.8
CDS-3UTR CAA 90 bp ATAGCCAATTGTGGGGAGGAAGGAATAAGTGAAACTTCCAGGTCCCTGAAGGAAACACCTTGTCAAATGTaGCAGGCTGGGCATCTCCCA +
Preference number: 5 (lower is better)
Translates to: IANCGEEGISETSRSLKETPCQM*QAGHLP
Trigger: TGGGAGATGCCCAGCCTGCAACATTTGACAAGGTGT...TTCCTTCAGGGACCTGGAAGTTTCACTTATTCCTTCCTCCCCACAATTGGCTAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063089.12
CDS-3UTR CAA 90 bp CAGACACAAGGAAGGAGAGACAGAGTTTGCTGGTCTTCTGATGGAGAAAAGTTGGCCAGCTTCGATCATTaGAACATGGAGCGTCAACTA +
Preference number: 5 (lower is better)
Translates to: QTQGRRDRVCWSSDGEKLASFDH*NMERQL
Trigger: TAGTTGACGCTCCATGTTCAAATGATCGAAGCTGGC...CAACTTTTCTCCATCAGAAGACCAGCAAACTCTGTCTCTCCTTCCTTGTGTCTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000063089.12
CDS TCA 90 bp GTACTCCAGGAATCCCCAAGTTCTTTCGAATACTGTTTGTCAAACTaGTCCAACACAACTCTGCATAGCTGTTTGGCAAGCTTCCCCTCT +
Preference number: 5 (lower is better)
Translates to: VLQESPSSFEYCLSN*SNTTLHSCLASFPS
Trigger: AGAGGGGAAGCTTGCCAAACAGCTATGCAGAGTTGTGTTGGATCAGTTTGACAAACAGTATTCGAAAGAACTTGGGGATTCCTGGAGTAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
ENSMUST00000152553.2
CDS-3UTR CAA 90 bp AACAGCATGCAGCAATTGTGCCAAGAAGGTAAGTTGAAAAGGAATAGCCGTGTGACCTGGATAAGCACATaGCAGCAGAGCTACGGATTT +
Preference number: 5 (lower is better)
Translates to: NSMQQLCQEGKLKRNSRVTWIST*QQSYGF
Trigger: AAATCCGTAGCTCTGCTGCAATGTGCTTATCCAGGT...CACACGGCTATTCCTTTTCAACTTACCTTCTTGGCACAATTGCTGCATGCTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
CDS GCA 90 bp CAAGTTCTTTCGAATACTGTTTGTCAAACTGATCCAACACAACTCTaGATAGCTGTTTGGCAAGCTTCCCCTCTGATTTTGCTTTCAGCC +
Preference number: 5 (lower is better)
Translates to: QVLSNTVCQTDPTQL*IAVWQASPLILLSA
Trigger: GGCTGAAAGCAAAATCAGAGGGGAAGCTTGCCAAACAGCTATGCAGAGTTGTGTTGGATCAGTTTGACAAACAGTATTCGAAAGAACTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
ENSMUST00000152553.2
CDS-3UTR CAA 90 bp ATAGCCTGCTGGATAGACTCCATTATTCTACAAGCTGAATGTCGAAAGTCAAATACTCTGCATAGCTGTTaGGCAAGCTTCCCCTCTGAT +
Preference number: 5 (lower is better)
Translates to: IACWIDSIILQAECRKSNTLHSC*ASFPSD
Trigger: ATCAGAGGGGAAGCTTGCCAAACAGCTATGCAGAGT...ATTTGACTTTCGACATTCAGCTTGTAGAATAATGGAGTCTATCCAGCAGGCTAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
CDS-3UTR CAA 90 bp GAAATTGTGCTGCTTAAGAAGTTAGCCTCCGAATACCAATTATTCCTACTAAAAACCTGGATAAGCACATaGCAGCAGAGCTACGGATTT +
Preference number: 5 (lower is better)
Translates to: EIVLLKKLASEYQLFLLKTWIST*QQSYGF
Trigger: AAATCCGTAGCTCTGCTGCAATGTGCTTATCCAGGT...TTTTAGTAGGAATAATTGGTATTCGGAGGCTAACTTCTTAAGCAGCACAATTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
CDS GCA 72 bp GACCTGGATAAGCACATTGCAGCAGAGCTACGGATTTaGCTCCAGGAGCAGCACACAAGTCCAGGACTGCCT +
Preference number: 6 (lower is better)
Translates to: DLDKHIAAELRI*LQEQHTSPGLP
Trigger: AGGCAGTCCTGGACTTGTGTGCTGCTCCTGGAGGCAAATCCGTAGCTCTGCTGCAATGTGCTTATCCAGGTC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000152553.2
CDS GCA 72 bp AACCTGGATAAGCACATTGCAGCAGAGCTACGGATTTaGCTCCAGGAGCAGCACACAAGTCCAGGACTGCCT +
Preference number: 6 (lower is better)
Translates to: NLDKHIAAELRI*LQEQHTSPGLP
Trigger: AGGCAGTCCTGGACTTGTGTGCTGCTCCTGGAGGCAAATCCGTAGCTCTGCTGCAATGTGCTTATCCAGGTT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000063089.12
ENSMUST00000143314.8
CDS CAA 90 bp CGGGCGATCATACTCGTTACAGAGAAGATAACCTGGATAAGCACATaGCAGCAGAGCTACGGATTTGCCTCCAGGAGCAGCACACAAGTC +
Preference number: 6 (lower is better)
Translates to: RAIILVTEKITWIST*QQSYGFASRSSTQV
Trigger: GACTTGTGTGCTGCTCCTGGAGGCAAATCCGTAGCTCTGCTGCAATGTGCTTATCCAGGTTATCTTCTCTGTAACGAGTATGATCGCCCG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063089.12
CDS CAA 72 bp ATACTCGTTACAGAGAAGATAACCTGGATAAGCACATaGCAGCAGAGCTACGGATTTGCCTCCAGGAGCAGC +
Preference number: 6 (lower is better)
Translates to: ILVTEKITWIST*QQSYGFASRSS
Trigger: GCTGCTCCTGGAGGCAAATCCGTAGCTCTGCTGCAATGTGCTTATCCAGGTTATCTTCTCTGTAACGAGTAT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000063089.12