Pregenerated sensors for NSMCE4A (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040331Ensembl transcript IDs: ENSMUST00000160289.9, ENSMUST00000161076.2
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR GCA 90 bp | CCATGCATTTCAACTGAGCAGGCATTGCACGCTGCTCTTCTATCATaGGAGGCTGTCTTGGCCGATCACTTCGTGGCTTTGGCACAGGGA | + |
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Preference number: 1 (lower is better) Translates to: PCISTEQALHAALLS*EAVLADHFVALAQG Trigger: TCCCTGTGCCAAAGCCACGAAGTGATCGGCCAAGACAGCCTCGCATGATAGAAGAGCAGCGTGCAATGCCTGCTCAGTTGAAATGCATGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161076.2 |
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| 3UTR CCA 90 bp | CTGAGCAGGCATTGCACGCTGCTCTTCTATCATGCGAGGCTGTCTTaGCCGATCACTTCGTGGCTTTGGCACAGGGAATTCTCCATGTAT | + |
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Preference number: 1 (lower is better) Translates to: LSRHCTLLFYHARLS*PITSWLWHREFSMY Trigger: ATACATGGAGAATTCCCTGTGCCAAAGCCACGAAGTGATCGGCCAAGACAGCCTCGCATGATAGAAGAGCAGCGTGCAATGCCTGCTCAG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161076.2 |
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| 3UTR GCA 90 bp | TGCTTCTTGGTGAGATTCTTCCATGCATTTCAACTGAGCAGGCATTaGACGCTGCTCTTCTATCATGCGAGGCTGTCTTGGCCGATCACT | + |
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Preference number: 1 (lower is better) Translates to: CFLVRFFHAFQLSRH*TLLFYHARLSWPIT Trigger: AGTGATCGGCCAAGACAGCCTCGCATGATAGAAGAGCAGCGTGCAATGCCTGCTCAGTTGAAATGCATGGAAGAATCTCACCAAGAAGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161076.2 |
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| 3UTR GCA 90 bp | TCCTCTCCACTTCCTTCTCCGTTGCTTCTTGGTGAGATTCTTCCATaGATTTCAACTGAGCAGGCATTGCACGCTGCTCTTCTATCATGC | + |
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Preference number: 1 (lower is better) Translates to: SSPLPSPLLLGEILP*ISTEQALHAALLSC Trigger: GCATGATAGAAGAGCAGCGTGCAATGCCTGCTCAGTTGAAATGCATGGAAGAATCTCACCAAGAAGCAACGGAGAAGGAAGTGGAGAGGA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161076.2 |
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| 3UTR CAA 90 bp | ACTGAGCAGGCATTGCACGCTGCTCTTCTATCATGCGAGGCTGTCTaGGCCGATCACTTCGTGGCTTTGGCACAGGGAATTCTCCATGTA | + |
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Preference number: 2 (lower is better) Translates to: TEQALHAALLSCEAV*ADHFVALAQGILHV Trigger: TACATGGAGAATTCCCTGTGCCAAAGCCACGAAGTGATCGGCCAAGACAGCCTCGCATGATAGAAGAGCAGCGTGCAATGCCTGCTCAGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161076.2 |
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| 3UTR CAA 90 bp | TTGCTTCTTGGTGAGATTCTTCCATGCATTTCAACTGAGCAGGCATaGCACGCTGCTCTTCTATCATGCGAGGCTGTCTTGGCCGATCAC | + |
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Preference number: 2 (lower is better) Translates to: LLLGEILPCISTEQA*HAALLSCEAVLADH Trigger: GTGATCGGCCAAGACAGCCTCGCATGATAGAAGAGCAGCGTGCAATGCCTGCTCAGTTGAAATGCATGGAAGAATCTCACCAAGAAGCAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161076.2 |
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| 3UTR-3UTR CCA 90 bp | CGTTGCTTCTTGGTGAGATTCTTCCATGCATTTCAACTGAGCAGGCATTGCACGTGGCCGATCACTTCGTaGCTTTGGCACAGGGAATTC | + |
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Preference number: 2 (lower is better) Translates to: RCFLVRFFHAFQLSRHCTWPITS*LWHREF Trigger: GAATTCCCTGTGCCAAAGCCACGAAGTGATCGGCCA...CGTGCAATGCCTGCTCAGTTGAAATGCATGGAAGAATCTCACCAAGAAGCAACG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161076.2 |
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| 3UTR-3UTR TCA 90 bp | TCTCCGTTGCTTCTTGGTGAGATTCTTCCATGCATTTCAACTGAGCAGGCATTGTCACGGATGACCTCTTaGGCTTCTAGTGGGTTTACA | + |
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Preference number: 2 (lower is better) Translates to: SPLLLGEILPCISTEQALSRMTS*ASSGFT Trigger: TGTAAACCCACTAGAAGCTCAAGAGGTCATCCGTGA...CAATGCCTGCTCAGTTGAAATGCATGGAAGAATCTCACCAAGAAGCAACGGAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161076.2 |
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| 3UTR-3UTR TCA 90 bp | TCTCCGTTGCTTCTTGGTGAGATTCTTCCATGCATTTCAACTGAGCAGGCATTGTGTCTTCATCACGGATaGCCTCTTGAGCTTCTAGTG | + |
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Preference number: 2 (lower is better) Translates to: SPLLLGEILPCISTEQALCLHHG*PLELLV Trigger: CACTAGAAGCTCAAGAGGTCATCCGTGATGAAGACA...CAATGCCTGCTCAGTTGAAATGCATGGAAGAATCTCACCAAGAAGCAACGGAGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161076.2 |
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| 3UTR-3UTR TCA 90 bp | CTTCTTGGTGAGATTCTTCCATGCATTTCAACTGAGCAGGCATTGCACGCTGCTGAATTCTCCATGTATTaGACCCAACAGAAAGTGGAA | + |
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Preference number: 2 (lower is better) Translates to: LLGEILPCISTEQALHAAEFSMY*TQQKVE Trigger: TTCCACTTTCTGTTGGGTTCAATACATGGAGAATTC...AGCAGCGTGCAATGCCTGCTCAGTTGAAATGCATGGAAGAATCTCACCAAGAAG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161076.2 |
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| 3UTR-3UTR CCA 90 bp | ATTCTTCCATGCATTTCAACTGAGCAGGCATTGCACGCTGCTCTTCTATCATGCGAACCCAACAGAAAGTaGAATGTATGGGTCTTATTA | + |
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Preference number: 2 (lower is better) Translates to: ILPCISTEQALHAALLSCEPNRK*NVWVLL Trigger: TAATAAGACCCATACATTCCACTTTCTGTTGGGTTC...GCATGATAGAAGAGCAGCGTGCAATGCCTGCTCAGTTGAAATGCATGGAAGAAT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161076.2 |
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| 3UTR GCA 72 bp | TCAACTGAGCAGGCATTGCACGCTGCTCTTCTATCATaGGAGGCTGTCTTGGCCGATCACTTCGTGGCTTTG | + |
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Preference number: 3 (lower is better) Translates to: STEQALHAALLS*EAVLADHFVAL Trigger: CAAAGCCACGAAGTGATCGGCCAAGACAGCCTCGCATGATAGAAGAGCAGCGTGCAATGCCTGCTCAGTTGA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161076.2 |
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| 3UTR CCA 72 bp | CATTGCACGCTGCTCTTCTATCATGCGAGGCTGTCTTaGCCGATCACTTCGTGGCTTTGGCACAGGGAATTC | + |
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Preference number: 3 (lower is better) Translates to: HCTLLFYHARLS*PITSWLWHREF Trigger: GAATTCCCTGTGCCAAAGCCACGAAGTGATCGGCCAAGACAGCCTCGCATGATAGAAGAGCAGCGTGCAATG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161076.2 |
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| 3UTR GCA 72 bp | GTGAGATTCTTCCATGCATTTCAACTGAGCAGGCATTaGACGCTGCTCTTCTATCATGCGAGGCTGTCTTGG | + |
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Preference number: 3 (lower is better) Translates to: VRFFHAFQLSRH*TLLFYHARLSW Trigger: CCAAGACAGCCTCGCATGATAGAAGAGCAGCGTGCAATGCCTGCTCAGTTGAAATGCATGGAAGAATCTCAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161076.2 |
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| 3UTR GCA 72 bp | CTTCCTTCTCCGTTGCTTCTTGGTGAGATTCTTCCATaGATTTCAACTGAGCAGGCATTGCACGCTGCTCTT | + |
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Preference number: 3 (lower is better) Translates to: LPSPLLLGEILP*ISTEQALHAAL Trigger: AAGAGCAGCGTGCAATGCCTGCTCAGTTGAAATGCATGGAAGAATCTCACCAAGAAGCAACGGAGAAGGAAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161076.2 |
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| CDS-3UTR CCA 90 bp | ATGCTGCTGCCCTTTCAGGGTTTCACTGTTGCCTTCAGGCCTTCCGCTGCTGGCTGGCGGCACAGGCCCTaGTCGTACTCGGCCTCCAAG | + |
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Preference number: 4 (lower is better) Translates to: MLLPFQGFTVAFRPSAAGWRHRP*SYSASK Trigger: CTTGGAGGCCGAGTACGACCAGGGCCTGTGCCGCCA...GCCAGCAGCGGAAGGCCTGAAGGCAACAGTGAAACCCTGAAAGGGCAGCAGCAT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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| CDS-3UTR TCA 90 bp | ACATGCTGCTGCCCTTTCAGGGTTTCACTGTTGCCTTCAGGCCTTCCGCTGCTGAGCCGCTGCTGGCTCTaGCTCAGCGGGATCACAGGC | + |
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Preference number: 4 (lower is better) Translates to: TCCCPFRVSLLPSGLPLLSRCWL*LSGITG Trigger: GCCTGTGATCCCGCTGAGTCAGAGCCAGCAGCGGCT...CAGCAGCGGAAGGCCTGAAGGCAACAGTGAAACCCTGAAAGGGCAGCAGCATGT 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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| CDS-3UTR CCA 90 bp | ACATGCTGCTGCCCTTTCAGGGTTTCACTGTTGCCTTCAGGCCTTCCGCTGCTGGCCAGAACAAGAAACTaGGCATCCAGAACTGCCTCT | + |
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Preference number: 4 (lower is better) Translates to: TCCCPFRVSLLPSGLPLLARTRN*ASRTAS Trigger: AGAGGCAGTTCTGGATGCCCAGTTTCTTGTTCTGGC...CAGCAGCGGAAGGCCTGAAGGCAACAGTGAAACCCTGAAAGGGCAGCAGCATGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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| 3UTR CAA 72 bp | GCATTGCACGCTGCTCTTCTATCATGCGAGGCTGTCTaGGCCGATCACTTCGTGGCTTTGGCACAGGGAATT | + |
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Preference number: 4 (lower is better) Translates to: ALHAALLSCEAV*ADHFVALAQGI Trigger: AATTCCCTGTGCCAAAGCCACGAAGTGATCGGCCAAGACAGCCTCGCATGATAGAAGAGCAGCGTGCAATGC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161076.2 |
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| CDS-3UTR TCA 90 bp | ACATGCTGCTGCCCTTTCAGGGTTTCACTGTTGCCTTCAGGCCTTCCGCTGCTGCTCTTTGCCCAAGTCTaGAGCCAGAACAAGAAACTG | + |
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Preference number: 4 (lower is better) Translates to: TCCCPFRVSLLPSGLPLLLFAQV*SQNKKL Trigger: CAGTTTCTTGTTCTGGCTTCAGACTTGGGCAAAGAG...CAGCAGCGGAAGGCCTGAAGGCAACAGTGAAACCCTGAAAGGGCAGCAGCATGT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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| CDS-3UTR TCA 90 bp | ACAATACATGCTGCTGCCCTTTCAGGGTTTCACTGTTGCCTTCAGGCCTTCCGCTGTCTTCATCACGGATaGCCTCTTGAGCTTCTAGTG | + |
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Preference number: 4 (lower is better) Translates to: TIHAAALSGFHCCLQAFRCLHHG*PLELLV Trigger: CACTAGAAGCTCAAGAGGTCATCCGTGATGAAGACA...GCGGAAGGCCTGAAGGCAACAGTGAAACCCTGAAAGGGCAGCAGCATGTATTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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| CDS-3UTR CCA 90 bp | CAATACATGCTGCTGCCCTTTCAGGGTTTCACTGTTGCCTTCAGGCCTTCCGCTTCTTCCCGGTTTTGTTaGACAGAGTTGATGAGAGCG | + |
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Preference number: 4 (lower is better) Translates to: QYMLLPFQGFTVAFRPSASSRFC*TELMRA Trigger: CGCTCTCATCAACTCTGTCCAACAAAACCGGGAAGA...AGCGGAAGGCCTGAAGGCAACAGTGAAACCCTGAAAGGGCAGCAGCATGTATTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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| 3UTR CAA 72 bp | TCATGCGAGGCTGTCTTGGCCGATCACTTCGTGGCTTaGGCACAGGGAATTCTCCATGTATTGAACCCAACA | + |
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Preference number: 4 (lower is better) Translates to: SCEAVLADHFVA*AQGILHVLNPT Trigger: TGTTGGGTTCAATACATGGAGAATTCCCTGTGCCAAAGCCACGAAGTGATCGGCCAAGACAGCCTCGCATGA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161076.2 |
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| CDS-3UTR TCA 90 bp | TCATACATATATACAATACATGCTGCTGCCCTTTCAGGGTTTCACTGTTGCCTTATGAGAGCGCGGTACTaGTGGCGGATCTGGCGGCAC | + |
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Preference number: 4 (lower is better) Translates to: SYIYTIHAAALSGFHCCLMRARY*WRIWRH Trigger: GTGCCGCCAGATCCGCCATCAGTACCGCGCTCTCAT...AAGGCAACAGTGAAACCCTGAAAGGGCAGCAGCATGTATTGTATATATGTATGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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| CDS-3UTR GCA 90 bp | TGCTCTTCTATCATGCGAGGCTGTCTTGGCCGATCACTTCGTGGCTTTGGCACAGTTTGGCTTTCTCTTTaGCCAAGTCTGAAGCCAGAA | + |
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Preference number: 4 (lower is better) Translates to: CSSIMRGCLGRSLRGFGTVWLSL*PSLKPE Trigger: TTCTGGCTTCAGACTTGGGCAAAGAGAAAGCCAAAC...TGTGCCAAAGCCACGAAGTGATCGGCCAAGACAGCCTCGCATGATAGAAGAGCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161076.2 |
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| CDS-3UTR CCA 90 bp | ATGCTGCTGCCCTTTCAGGGTTTCACTGTTGCCTTCAGGCCTTCCGCTGCTGGCTTCTTCATTAATCACTaGCTCTATTATTGGCAGTCG | + |
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Preference number: 4 (lower is better) Translates to: MLLPFQGFTVAFRPSAAGFFINH*LYYWQS Trigger: CGACTGCCAATAATAGAGCCAGTGATTAATGAAGAA...GCCAGCAGCGGAAGGCCTGAAGGCAACAGTGAAACCCTGAAAGGGCAGCAGCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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| 3UTR CAA 72 bp | GGTGAGATTCTTCCATGCATTTCAACTGAGCAGGCATaGCACGCTGCTCTTCTATCATGCGAGGCTGTCTTG | + |
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Preference number: 4 (lower is better) Translates to: GEILPCISTEQA*HAALLSCEAVL Trigger: CAAGACAGCCTCGCATGATAGAAGAGCAGCGTGCAATGCCTGCTCAGTTGAAATGCATGGAAGAATCTCACC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161076.2 |
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| CDS-3UTR CCA 90 bp | CAAGATCCTCTCCACTTCCTTCTCCGTTGCTTCTTGGTGAGATTCTTCCATGCAGCCAGAACAAGAAACTaGGCATCCAGAACTGCCTCT | + |
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Preference number: 4 (lower is better) Translates to: QDPLHFLLRCFLVRFFHAARTRN*ASRTAS Trigger: AGAGGCAGTTCTGGATGCCCAGTTTCTTGTTCTGGC...TGCATGGAAGAATCTCACCAAGAAGCAACGGAGAAGGAAGTGGAGAGGATCTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161076.2 |
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| CDS-3UTR CCA 90 bp | ATATATACAATACATGCTGCTGCCCTTTCAGGGTTTCACTGTTGCCTTCAGGCCTGGCCGATCACTTCGTaGCTTTGGCACAGGGAATTC | + |
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Preference number: 4 (lower is better) Translates to: IYTIHAAALSGFHCCLQAWPITS*LWHREF Trigger: GAATTCCCTGTGCCAAAGCCACGAAGTGATCGGCCA...GGCCTGAAGGCAACAGTGAAACCCTGAAAGGGCAGCAGCATGTATTGTATATAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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| CDS-3UTR TCA 90 bp | CCGTTGCTTCTTGGTGAGATTCTTCCATGCATTTCAACTGAGCAGGCATTGCACCTCTTTGCCCAAGTCTaGAGCCAGAACAAGAAACTG | + |
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Preference number: 4 (lower is better) Translates to: PLLLGEILPCISTEQALHLFAQV*SQNKKL Trigger: CAGTTTCTTGTTCTGGCTTCAGACTTGGGCAAAGAG...GTGCAATGCCTGCTCAGTTGAAATGCATGGAAGAATCTCACCAAGAAGCAACGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161076.2 |
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| CDS-3UTR TCA 90 bp | ATATATACAATACATGCTGCTGCCCTTTCAGGGTTTCACTGTTGCCTTCAGGCCTCCGTTGCTTCTTGGTaGGATTCTTCCATGCATTTC | + |
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Preference number: 4 (lower is better) Translates to: IYTIHAAALSGFHCCLQASVASW*DSSMHF Trigger: GAAATGCATGGAAGAATCTCACCAAGAAGCAACGGA...GGCCTGAAGGCAACAGTGAAACCCTGAAAGGGCAGCAGCATGTATTGTATATAT 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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| CDS-3UTR GCA 90 bp | TATATACAATACATGCTGCTGCCCTTTCAGGGTTTCACTGTTGCCTTCAGGCCTGGTGAGATTCTTCCATaGATTTCAACTGAGCAGGCA | + |
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Preference number: 4 (lower is better) Translates to: YIQYMLLPFQGFTVAFRPGEILP*ISTEQA Trigger: TGCCTGCTCAGTTGAAATGCATGGAAGAATCTCACC...AGGCCTGAAGGCAACAGTGAAACCCTGAAAGGGCAGCAGCATGTATTGTATATA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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| CDS-3UTR TCA 90 bp | TACATATATACAATACATGCTGCTGCCCTTTCAGGGTTTCACTGTTGCCTTCAGTCACGGATGACCTCTTaGGCTTCTAGTGGGTTTACA | + |
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Preference number: 4 (lower is better) Translates to: YIYTIHAAALSGFHCCLQSRMTS*ASSGFT Trigger: TGTAAACCCACTAGAAGCTCAAGAGGTCATCCGTGA...CTGAAGGCAACAGTGAAACCCTGAAAGGGCAGCAGCATGTATTGTATATATGTA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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| CDS-3UTR CCA 90 bp | TCATACATATATACAATACATGCTGCTGCCCTTTCAGGGTTTCACTGTTGCCTTCAGAGCGCAGCTGTTTaGCTTTCTCTTTGCCCAAGT | + |
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Preference number: 4 (lower is better) Translates to: SYIYTIHAAALSGFHCCLQSAAV*LSLCPS Trigger: ACTTGGGCAAAGAGAAAGCCAAACAGCTGCGCTCTG...AAGGCAACAGTGAAACCCTGAAAGGGCAGCAGCATGTATTGTATATATGTATGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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| CDS-3UTR TCA 90 bp | TATATACAATACATGCTGCTGCCCTTTCAGGGTTTCACTGTTGCCTTCAGGCCTGAATTCTCCATGTATTaGACCCAACAGAAAGTGGAA | + |
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Preference number: 4 (lower is better) Translates to: YIQYMLLPFQGFTVAFRPEFSMY*TQQKVE Trigger: TTCCACTTTCTGTTGGGTTCAATACATGGAGAATTC...AGGCCTGAAGGCAACAGTGAAACCCTGAAAGGGCAGCAGCATGTATTGTATATA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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| CDS-3UTR GCA 90 bp | TACATATATACAATACATGCTGCTGCCCTTTCAGGGTTTCACTGTTGCCTTCAGGTTTGGCTTTCTCTTTaGCCAAGTCTGAAGCCAGAA | + |
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Preference number: 4 (lower is better) Translates to: YIYTIHAAALSGFHCCLQVWLSL*PSLKPE Trigger: TTCTGGCTTCAGACTTGGGCAAAGAGAAAGCCAAAC...CTGAAGGCAACAGTGAAACCCTGAAAGGGCAGCAGCATGTATTGTATATATGTA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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| CDS-3UTR GCA 90 bp | TCATACATATATACAATACATGCTGCTGCCCTTTCAGGGTTTCACTGTTGCCTTCACTTCCTTCTCCGTTaGTTCTTGGTGAGATTCTTC | + |
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Preference number: 4 (lower is better) Translates to: SYIYTIHAAALSGFHCCLHFLLR*FLVRFF Trigger: GAAGAATCTCACCAAGAAGCAACGGAGAAGGAAGTG...AAGGCAACAGTGAAACCCTGAAAGGGCAGCAGCATGTATTGTATATATGTATGA 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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| CDS-3UTR GCA 90 bp | TACATATATACAATACATGCTGCTGCCCTTTCAGGGTTTCACTGTTGCCTTCAGGTCAAGTCTTATTCTTaGAAAACCATCCCGTATGAT | + |
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Preference number: 4 (lower is better) Translates to: YIYTIHAAALSGFHCCLQVKSYS*KTIPYD Trigger: ATCATACGGGATGGTTTTGCAAGAATAAGACTTGAC...CTGAAGGCAACAGTGAAACCCTGAAAGGGCAGCAGCATGTATTGTATATATGTA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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| CDS-3UTR CCA 90 bp | TCATACATATATACAATACATGCTGCTGCCCTTTCAGGGTTTCACTGTTGCCTTGAACCCAACAGAAAGTaGAATGTATGGGTCTTATTA | + |
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Preference number: 4 (lower is better) Translates to: SYIYTIHAAALSGFHCCLEPNRK*NVWVLL Trigger: TAATAAGACCCATACATTCCACTTTCTGTTGGGTTC...AAGGCAACAGTGAAACCCTGAAAGGGCAGCAGCATGTATTGTATATATGTATGA 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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| CDS GCA 90 bp | CAGACAGATCGGAGTCCTCCAAGCTCGGACGCTCCGCTGCCTCCCTaGGCTCCGGCGCGGCGCCGCGGCGGGCCAGCGGGGACCGCGAGC | + |
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Preference number: 5 (lower is better) Translates to: QTDRSPPSSDAPLPP*APARRRGGPAGTAS Trigger: GCTCGCGGTCCCCGCTGGCCCGCCGCGGCGCCGCGCCGGAGCGCAGGGAGGCAGCGGAGCGTCCGAGCTTGGAGGACTCCGATCTGTCTG 78% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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| CDS TCA 90 bp | ATGTCTTCCCGGTTTTGTTGGACAGAGTTGATGAGAGCGCGGTACTaGTGGCGGATCTGGCGGCACAGGCCCTGGTCGTACTCGGCCTCC | + |
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Preference number: 5 (lower is better) Translates to: MSSRFCWTELMRARY*WRIWRHRPWSYSAS Trigger: GGAGGCCGAGTACGACCAGGGCCTGTGCCGCCAGATCCGCCATCAGTACCGCGCTCTCATCAACTCTGTCCAACAAAACCGGGAAGACAT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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| CDS-3UTR CAA 90 bp | ATGCTGCTGCCCTTTCAGGGTTTCACTGTTGCCTTCAGGCCTTCCGCTGCTGGCTCAGAGCGCAGCTGTTaGGCTTTCTCTTTGCCCAAG | + |
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Preference number: 5 (lower is better) Translates to: MLLPFQGFTVAFRPSAAGSERSC*AFSLPK Trigger: CTTGGGCAAAGAGAAAGCCAAACAGCTGCGCTCTGA...GCCAGCAGCGGAAGGCCTGAAGGCAACAGTGAAACCCTGAAAGGGCAGCAGCAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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| CDS TCA 90 bp | AGCCAGAACAAGAAACTGGGCATCCAGAACTGCCTCTCTTGCTCGTaGCACTGGGCTGCTGTAACTCCCAGGGAATGGCCACTACAGGTA | + |
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Preference number: 5 (lower is better) Translates to: SQNKKLGIQNCLSCS*HWAAVTPREWPLQV Trigger: TACCTGTAGTGGCCATTCCCTGGGAGTTACAGCAGCCCAGTGTCACGAGCAAGAGAGGCAGTTCTGGATGCCCAGTTTCTTGTTCTGGCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161076.2 |
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| CDS TCA 90 bp | GCTCAGGTCAGAGCGCAGCTGTTTGGCTTTCTCTTTGCCCAAGTCTaGAGCCAGAACAAGAAACTGGGCATCCAGAACTGCCTCTCTTGC | + |
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Preference number: 5 (lower is better) Translates to: AQVRAQLFGFLFAQV*SQNKKLGIQNCLSC Trigger: GCAAGAGAGGCAGTTCTGGATGCCCAGTTTCTTGTTCTGGCTTCAGACTTGGGCAAAGAGAAAGCCAAACAGCTGCGCTCTGACCTGAGC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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| CDS-3UTR CAA 90 bp | ATGCTGCTGCCCTTTCAGGGTTTCACTGTTGCCTTCAGGCCTTCCGCTGCTGGCAGGACCTCTGTTAGTTaGTCACCAGCATTCAGTATG | + |
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Preference number: 5 (lower is better) Translates to: MLLPFQGFTVAFRPSAAGRTSVS*SPAFSM Trigger: CATACTGAATGCTGGTGACAAACTAACAGAGGTCCT...GCCAGCAGCGGAAGGCCTGAAGGCAACAGTGAAACCCTGAAAGGGCAGCAGCAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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| CDS-3UTR CAA 90 bp | CCTTCTCCGTTGCTTCTTGGTGAGATTCTTCCATGCATTTCAACTGAGCAGGCACCAGAACTGCCTCTCTaGCTCGTGACACTGGGCTGC | + |
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Preference number: 5 (lower is better) Translates to: PSPLLLGEILPCISTEQAPELPL*LVTLGC Trigger: GCAGCCCAGTGTCACGAGCAAGAGAGGCAGTTCTGG...TGCCTGCTCAGTTGAAATGCATGGAAGAATCTCACCAAGAAGCAACGGAGAAGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161076.2 |
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| CDS-3UTR CAA 90 bp | CAATACATGCTGCTGCCCTTTCAGGGTTTCACTGTTGCCTTCAGGCCTTCCGCTGTCTTCCCGGTTTTGTaGGACAGAGTTGATGAGAGC | + |
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Preference number: 5 (lower is better) Translates to: QYMLLPFQGFTVAFRPSAVFPVL*DRVDES Trigger: GCTCTCATCAACTCTGTCCAACAAAACCGGGAAGAC...AGCGGAAGGCCTGAAGGCAACAGTGAAACCCTGAAAGGGCAGCAGCATGTATTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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| CDS-3UTR CAA 90 bp | ACAATACATGCTGCTGCCCTTTCAGGGTTTCACTGTTGCCTTCAGGCCTTCCGCTGTTTGGCTTTCTCTTaGCCCAAGTCTGAAGCCAGA | + |
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Preference number: 5 (lower is better) Translates to: TIHAAALSGFHCCLQAFRCLAFS*PKSEAR Trigger: TCTGGCTTCAGACTTGGGCAAAGAGAAAGCCAAACA...GCGGAAGGCCTGAAGGCAACAGTGAAACCCTGAAAGGGCAGCAGCATGTATTGT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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| CDS-3UTR CAA 90 bp | TGCTCTTCTATCATGCGAGGCTGTCTTGGCCGATCACTTCGTGGCTTTGGCACATGTTTGGCTTTCTCTTaGCCCAAGTCTGAAGCCAGA | + |
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Preference number: 5 (lower is better) Translates to: CSSIMRGCLGRSLRGFGTCLAFS*PKSEAR Trigger: TCTGGCTTCAGACTTGGGCAAAGAGAAAGCCAAACA...TGTGCCAAAGCCACGAAGTGATCGGCCAAGACAGCCTCGCATGATAGAAGAGCA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161076.2 |
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| CDS-3UTR CAA 90 bp | ATGCTGCTGCCCTTTCAGGGTTTCACTGTTGCCTTCAGGCCTTCCGCTGCTGGCTCCTTGACTCCTAATTaGAATGTTGTGGTCAATTCC | + |
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Preference number: 5 (lower is better) Translates to: MLLPFQGFTVAFRPSAAGSLTPN*NVVVNS Trigger: GGAATTGACCACAACATTCAAATTAGGAGTCAAGGA...GCCAGCAGCGGAAGGCCTGAAGGCAACAGTGAAACCCTGAAAGGGCAGCAGCAT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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| CDS GCA 90 bp | TATCAAACGAGCTCAGGTCAGAGCGCAGCTGTTTGGCTTTCTCTTTaGCCAAGTCTGAAGCCAGAACAAGAAACTGGGCATCCAGAACTG | + |
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Preference number: 5 (lower is better) Translates to: YQTSSGQSAAVWLSL*PSLKPEQETGHPEL Trigger: CAGTTCTGGATGCCCAGTTTCTTGTTCTGGCTTCAGACTTGGGCAAAGAGAAAGCCAAACAGCTGCGCTCTGACCTGAGCTCGTTTGATA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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| CDS TCA 90 bp | GGCTGCTGTAACTCCCAGGGAATGGCCACTACAGGTAGGGAGAGATaGTACAAAGTCTTCATTAAACAGAGTGTTAGCTTCTTCCAGGAC | + |
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Preference number: 5 (lower is better) Translates to: GCCNSQGMATTGRER*YKVFIKQSVSFFQD Trigger: GTCCTGGAAGAAGCTAACACTCTGTTTAATGAAGACTTTGTATCATCTCTCCCTACCTGTAGTGGCCATTCCCTGGGAGTTACAGCAGCC 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161076.2 |
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| CDS CCA 90 bp | CATATCTTAACATATCAAACGAGCTCAGGTCAGAGCGCAGCTGTTTaGCTTTCTCTTTGCCCAAGTCTGAAGCCAGAACAAGAAACTGGG | + |
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Preference number: 5 (lower is better) Translates to: HILTYQTSSGQSAAV*LSLCPSLKPEQETG Trigger: CCCAGTTTCTTGTTCTGGCTTCAGACTTGGGCAAAGAGAAAGCCAAACAGCTGCGCTCTGACCTGAGCTCGTTTGATATGTTAAGATATG 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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| CDS-3UTR CAA 90 bp | ATATATACAATACATGCTGCTGCCCTTTCAGGGTTTCACTGTTGCCTTCAGGCCCCACTTCCTTCTCCGTaGCTTCTTGGTGAGATTCTT | + |
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Preference number: 5 (lower is better) Translates to: IYTIHAAALSGFHCCLQAPLPSP*LLGEIL Trigger: AAGAATCTCACCAAGAAGCAACGGAGAAGGAAGTGG...GGCCTGAAGGCAACAGTGAAACCCTGAAAGGGCAGCAGCATGTATTGTATATAT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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| CDS-3UTR CAA 90 bp | TCATACATATATACAATACATGCTGCTGCCCTTTCAGGGTTTCACTGTTGCCTTCTTCTCCGTTGCTTCTaGGTGAGATTCTTCCATGCA | + |
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Preference number: 5 (lower is better) Translates to: SYIYTIHAAALSGFHCCLLLRCF*VRFFHA Trigger: TGCATGGAAGAATCTCACCAAGAAGCAACGGAGAAG...AAGGCAACAGTGAAACCCTGAAAGGGCAGCAGCATGTATTGTATATATGTATGA 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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| CDS TCA 72 bp | CGGTTTTGTTGGACAGAGTTGATGAGAGCGCGGTACTaGTGGCGGATCTGGCGGCACAGGCCCTGGTCGTAC | + |
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Preference number: 6 (lower is better) Translates to: RFCWTELMRARY*WRIWRHRPWSY Trigger: GTACGACCAGGGCCTGTGCCGCCAGATCCGCCATCAGTACCGCGCTCTCATCAACTCTGTCCAACAAAACCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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| CDS TCA 72 bp | AAGAAACTGGGCATCCAGAACTGCCTCTCTTGCTCGTaGCACTGGGCTGCTGTAACTCCCAGGGAATGGCCA | + |
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Preference number: 6 (lower is better) Translates to: KKLGIQNCLSCS*HWAAVTPREWP Trigger: TGGCCATTCCCTGGGAGTTACAGCAGCCCAGTGTCACGAGCAAGAGAGGCAGTTCTGGATGCCCAGTTTCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161076.2 |
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| CDS CAA 72 bp | CCAGAACAAGAAACTGGGCATCCAGAACTGCCTCTCTaGCTCGTGACACTGGGCTGCTGTAACTCCCAGGGA | + |
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Preference number: 6 (lower is better) Translates to: PEQETGHPELPL*LVTLGCCNSQG Trigger: TCCCTGGGAGTTACAGCAGCCCAGTGTCACGAGCAAGAGAGGCAGTTCTGGATGCCCAGTTTCTTGTTCTGG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161076.2 |
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| CDS CAA 90 bp | AGTCTGAAGCCAGAACAAGAAACTGGGCATCCAGAACTGCCTCTCTaGCTCGTGACACTGGGCTGCTGTAACTCCCAGGGAATGGCCACT | + |
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Preference number: 6 (lower is better) Translates to: SLKPEQETGHPELPL*LVTLGCCNSQGMAT Trigger: AGTGGCCATTCCCTGGGAGTTACAGCAGCCCAGTGTCACGAGCAAGAGAGGCAGTTCTGGATGCCCAGTTTCTTGTTCTGGCTTCAGACT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000161076.2 |
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| CDS TCA 72 bp | AGAGCGCAGCTGTTTGGCTTTCTCTTTGCCCAAGTCTaGAGCCAGAACAAGAAACTGGGCATCCAGAACTGC | + |
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Preference number: 6 (lower is better) Translates to: RAQLFGFLFAQV*SQNKKLGIQNC Trigger: GCAGTTCTGGATGCCCAGTTTCTTGTTCTGGCTTCAGACTTGGGCAAAGAGAAAGCCAAACAGCTGCGCTCT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000160289.9 ENSMUST00000161076.2 |
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| CDS CAA 90 bp | ATATCAAACGAGCTCAGGTCAGAGCGCAGCTGTTTGGCTTTCTCTTaGCCCAAGTCTGAAGCCAGAACAAGAAACTGGGCATCCAGAACT | + |
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Preference number: 6 (lower is better) Translates to: ISNELRSERSCLAFS*PKSEARTRNWASRT Trigger: AGTTCTGGATGCCCAGTTTCTTGTTCTGGCTTCAGACTTGGGCAAAGAGAAAGCCAAACAGCTGCGCTCTGACCTGAGCTCGTTTGATAT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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| CDS CCA 72 bp | ACATATCAAACGAGCTCAGGTCAGAGCGCAGCTGTTTaGCTTTCTCTTTGCCCAAGTCTGAAGCCAGAACAA | + |
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Preference number: 6 (lower is better) Translates to: TYQTSSGQSAAV*LSLCPSLKPEQ Trigger: TTGTTCTGGCTTCAGACTTGGGCAAAGAGAAAGCCAAACAGCTGCGCTCTGACCTGAGCTCGTTTGATATGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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| CDS CAA 72 bp | AACAGAGTGTTAGCTTCTTCCAGGACCTCTGTTAGTTaGTCACCAGCATTCAGTATGTCTTCCCGGTTTTGT | + |
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Preference number: 6 (lower is better) Translates to: NRVLASSRTSVS*SPAFSMSSRFC Trigger: ACAAAACCGGGAAGACATACTGAATGCTGGTGACAAACTAACAGAGGTCCTGGAAGAAGCTAACACTCTGTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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| CDS CAA 90 bp | ACTTCATTAAACAGAGTGTTAGCTTCTTCCAGGACCTCTGTTAGTTaGTCACCAGCATTCAGTATGTCTTCCCGGTTTTGTTGGACAGAG | + |
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Preference number: 6 (lower is better) Translates to: TSLNRVLASSRTSVS*SPAFSMSSRFCWTE Trigger: CTCTGTCCAACAAAACCGGGAAGACATACTGAATGCTGGTGACAAACTAACAGAGGTCCTGGAAGAAGCTAACACTCTGTTTAATGAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000160289.9 |
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