Pregenerated sensors for NSMCE2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000059586Ensembl transcript IDs: ENSMUST00000079703.11, ENSMUST00000168722.3, ENSMUST00000227173.2
Found 134 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CTTCAAGGGTTACCGCAAACAGCGCTGCTTGGCCAGGCCTATCGCTaGCATCCCTCACTCTCTGGTGGCTGGCGGGGAGGTAGGCTGCTG | + |
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Preference number: 1 (lower is better) Translates to: LQGLPQTALLGQAYR*HPSLSGGWRGGRLL Trigger: CAGCAGCCTACCTCCCCGCCAGCCACCAGAGAGTGAGGGATGCCAGCGATAGGCCTGGCCAAGCAGCGCTGTTTGCGGTAACCCTTGAAG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
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| 3UTR CCA 90 bp | TGCTGGCAAGGACGGGAAGCAATTGGAACCCTCAGACACTGCTGGTaGAAATGTAAAATGGCGCCCTCGCTGTGGGAAACAGCCTGGGAG | + |
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Preference number: 1 (lower is better) Translates to: CWQGREAIGTLRHCW*KCKMAPSLWETAWE Trigger: CTCCCAGGCTGTTTCCCACAGCGAGGGCGCCATTTTACATTTCCACCAGCAGTGTCTGAGGGTTCCAATTGCTTCCCGTCCTTGCCAGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR GCA 90 bp | GACAAGTGCTGGCAAGGACGGGAAGCAATTGGAACCCTCAGACACTaGTGGTGGAAATGTAAAATGGCGCCCTCGCTGTGGGAAACAGCC | + |
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Preference number: 1 (lower is better) Translates to: DKCWQGREAIGTLRH*WWKCKMAPSLWETA Trigger: GGCTGTTTCCCACAGCGAGGGCGCCATTTTACATTTCCACCAGCAGTGTCTGAGGGTTCCAATTGCTTCCCGTCCTTGCCAGCACTTGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR GCA 90 bp | CTTTTCTCCTTGGTCCCCTGCAGGCCCTCAGCAAACAGTGCCGAATaGAGTCAGGAATGCACAGCACACAGGAAGCTTAGCACTGGTGAG | + |
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Preference number: 1 (lower is better) Translates to: LFSLVPCRPSANSAE*SQECTAHRKLSTGE Trigger: CTCACCAGTGCTAAGCTTCCTGTGTGCTGTGCATTCCTGACTGCATTCGGCACTGTTTGCTGAGGGCCTGCAGGGGACCAAGGAGAAAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR CCA 90 bp | AAGGGCGGAACTAGCCATAGCCACTCTTCCTTTCTCTTTTCTCCTTaGTCCCCTGCAGGCCCTCAGCAAACAGTGCCGAATGCAGTCAGG | + |
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Preference number: 1 (lower is better) Translates to: KGGTSHSHSSFLFSP*SPAGPQQTVPNAVR Trigger: CCTGACTGCATTCGGCACTGTTTGCTGAGGGCCTGCAGGGGACCAAGGAGAAAAGAGAAAGGAAGAGTGGCTATGGCTAGTTCCGCCCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR TCA 90 bp | CAGCACACAGGAAGCTTAGCACTGGTGAGGCTCTCTCTGTGCCAGTaGGGACCACTGGTCTCCTGTGAAGTTATTTGTCCTGGGGAGCTT | + |
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Preference number: 1 (lower is better) Translates to: QHTGSLALVRLSLCQ*GPLVSCEVICPGEL Trigger: AAGCTCCCCAGGACAAATAACTTCACAGGAGACCAGTGGTCCTCACTGGCACAGAGAGAGCCTCACCAGTGCTAAGCTTCCTGTGTGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR TCA 90 bp | TTCTTTGGAACCACTCCCCAGCCGAGCCACAGGCCCACAGTAAGATaGGGAGCAGATAAGGCAGAGGTAGAAACTAAGAAGGGCGGAACT | + |
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Preference number: 1 (lower is better) Translates to: FFGTTPQPSHRPTVR*GADKAEVETKKGGT Trigger: AGTTCCGCCCTTCTTAGTTTCTACCTCTGCCTTATCTGCTCCTCATCTTACTGTGGGCCTGTGGCTCGGCTGGGGAGTGGTTCCAAAGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR GCA 90 bp | GGGCCAGGGTTAGCCAGTCGTCCAGGATCTTTAGTAGCCACAATGTaGTTGCTTCACCCAGAGCAGTGTTTCAAAAAGTGTCAAAAGAGA | + |
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Preference number: 1 (lower is better) Translates to: GPGLASRPGSLVATM*LLHPEQCFKKCQKR Trigger: TCTCTTTTGACACTTTTTGAAACACTGCTCTGGGTGAAGCAAGCACATTGTGGCTACTAAAGATCCTGGACGACTGGCTAACCCTGGCCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR CCA 90 bp | CAAGAAAGCCCAACCTATTTTAAGTGGTTTCAGGTGACAGATTATTaGCCCACACTGAGATACAGGGTGGTGGAGAAAAGGTTTCCTGTG | + |
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Preference number: 1 (lower is better) Translates to: QESPTYFKWFQVTDY*PTLRYRVVEKRFPV Trigger: CACAGGAAACCTTTTCTCCACCACCCTGTATCTCAGTGTGGGCCAATAATCTGTCACCTGAAACCACTTAAAATAGGTTGGGCTTTCTTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR CCA 90 bp | TCATCACAGCAACAGGACAGTCAAGAAAGCCCAACCTATTTTAAGTaGTTTCAGGTGACAGATTATTGGCCCACACTGAGATACAGGGTG | + |
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Preference number: 1 (lower is better) Translates to: SSQQQDSQESPTYFK*FQVTDYWPTLRYRV Trigger: CACCCTGTATCTCAGTGTGGGCCAATAATCTGTCACCTGAAACCACTTAAAATAGGTTGGGCTTTCTTGACTGTCCTGTTGCTGTGATGA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR GCA 90 bp | TGGGACTATGAAGGCAAGGAGCTTAAAGCTTTCTGTAAAAACTGCTaGAAGGAAACTCAGAATCCAATGGAAAATAAGCTCGGCCACAGC | + |
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Preference number: 1 (lower is better) Translates to: WDYEGKELKAFCKNC*KETQNPMENKLGHS Trigger: GCTGTGGCCGAGCTTATTTTCCATTGGATTCTGAGTTTCCTTGCAGCAGTTTTTACAGAAAGCTTTAAGCTCCTTGCCTTCATAGTCCCA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR GCA 90 bp | GTGTGGGACTATGAAGGCAAGGAGCTTAAAGCTTTCTGTAAAAACTaGTGCAAGGAAACTCAGAATCCAATGGAAAATAAGCTCGGCCAC | + |
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Preference number: 1 (lower is better) Translates to: VWDYEGKELKAFCKN*CKETQNPMENKLGH Trigger: GTGGCCGAGCTTATTTTCCATTGGATTCTGAGTTTCCTTGCAGCAGTTTTTACAGAAAGCTTTAAGCTCCTTGCCTTCATAGTCCCACAC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR CCA 90 bp | TTAAAGCTTTCTGTAAAAACTGCTGCAAGGAAACTCAGAATCCAATaGAAAATAAGCTCGGCCACAGCCAAACCTGTCAGCTGGCTTCCT | + |
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Preference number: 1 (lower is better) Translates to: LKLSVKTAARKLRIQ*KISSATAKPVSWLP Trigger: AGGAAGCCAGCTGACAGGTTTGGCTGTGGCCGAGCTTATTTTCCATTGGATTCTGAGTTTCCTTGCAGCAGTTTTTACAGAAAGCTTTAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR TCA 90 bp | AAAACCAGAAGGGATACACATTTCCATTTTCAAGTGTTTACCCAGTaGCACCATACTGTGGATTTAGTCAAGTGCTGTCTGGATTATCCA | + |
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Preference number: 1 (lower is better) Translates to: KTRRDTHFHFQVFTQ*HHTVDLVKCCLDYP Trigger: TGGATAATCCAGACAGCACTTGACTAAATCCACAGTATGGTGTCACTGGGTAAACACTTGAAAATGGAAATGTGTATCCCTTCTGGTTTT 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR TCA 90 bp | GTCACACAACAGCATTTTAGTAGTGCAGATAAAGAACACTGCAGATaGATTCATACTGCAAAACTAATGTCCCAGGTGAGTGTGTTATCT | + |
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Preference number: 1 (lower is better) Translates to: VTQQHFSSADKEHCR*IHTAKLMSQVSVLS Trigger: AGATAACACACTCACCTGGGACATTAGTTTTGCAGTATGAATTCATCTGCAGTGTTCTTTATCTGCACTACTAAAATGCTGTTGTGTGAC 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR CAA 90 bp | TTTCAATTACAATTAGCCTTCAAGGGTTACCGCAAACAGCGCTGCTaGGCCAGGCCTATCGCTGGCATCCCTCACTCTCTGGTGGCTGGC | + |
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Preference number: 2 (lower is better) Translates to: FQLQLAFKGYRKQRC*ARPIAGIPHSLVAG Trigger: GCCAGCCACCAGAGAGTGAGGGATGCCAGCGATAGGCCTGGCCAAGCAGCGCTGTTTGCGGTAACCCTTGAAGGCTAATTGTAATTGAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
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| 3UTR CAA 90 bp | GTAAGAAGACAGGCAGTGACAAGTGCTGGCAAGGACGGGAAGCAATaGGAACCCTCAGACACTGCTGGTGGAAATGTAAAATGGCGCCCT | + |
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Preference number: 2 (lower is better) Translates to: VRRQAVTSAGKDGKQ*EPSDTAGGNVKWRP Trigger: AGGGCGCCATTTTACATTTCCACCAGCAGTGTCTGAGGGTTCCAATTGCTTCCCGTCCTTGCCAGCACTTGTCACTGCCTGTCTTCTTAC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR-3UTR CCA 90 bp | TCTCTCTGTGCCAGTGAGGACCACTGGTCTCCTGTGAAGTTATTTGTCCTGGGGACCCTCAGACACTGCTaGTGGAAATGTAAAATGGCG | + |
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Preference number: 2 (lower is better) Translates to: SLCASEDHWSPVKLFVLGTLRHC*WKCKMA Trigger: CGCCATTTTACATTTCCACCAGCAGTGTCTGAGGGT...CCCCAGGACAAATAACTTCACAGGAGACCAGTGGTCCTCACTGGCACAGAGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR-3UTR GCA 90 bp | CAGGAACAAATGAATCCGCTTTTCCTCGGCCATCATCCCCTCCTGTGTGGGACTGGAACCCTCAGACACTaGTGGTGGAAATGTAAAATG | + |
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Preference number: 2 (lower is better) Translates to: QEQMNPLFLGHHPLLCGTGTLRH*WWKCKM Trigger: CATTTTACATTTCCACCAGCAGTGTCTGAGGGTTCC...AGTCCCACACAGGAGGGGATGATGGCCGAGGAAAAGCGGATTCATTTGTTCCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR-3UTR TCA 90 bp | CAAACAGTGCCGAATGCAGTCAGGAATGCACAGCACACAGGAAGCTTAGCACTGTTAAGTGGTTTCAGGTaGCAGATTATTGGCCCACAC | + |
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Preference number: 2 (lower is better) Translates to: QTVPNAVRNAQHTGSLALLSGFR*QIIGPH Trigger: GTGTGGGCCAATAATCTGTCACCTGAAACCACTTAA...CAGTGCTAAGCTTCCTGTGTGCTGTGCATTCCTGACTGCATTCGGCACTGTTTG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR-3UTR GCA 90 bp | CCAGGATCTTTAGTAGCCACAATGTGCTTGCTTCACCCAGAGCAGTGTTTCAAAGCAAACAGTGCCGAATaGAGTCAGGAATGCACAGCA | + |
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Preference number: 2 (lower is better) Translates to: PGSLVATMCLLHPEQCFKANSAE*SQECTA Trigger: TGCTGTGCATTCCTGACTGCATTCGGCACTGTTTGC...TTTGAAACACTGCTCTGGGTGAAGCAAGCACATTGTGGCTACTAAAGATCCTGG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR-3UTR CCA 90 bp | TGCAGGCCCTCAGCAAACAGTGCCGAATGCAGTCAGGAATGCACAGCACACAGGCCAACCTATTTTAAGTaGTTTCAGGTGACAGATTAT | + |
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Preference number: 2 (lower is better) Translates to: CRPSANSAECSQECTAHRPTYFK*FQVTDY Trigger: ATAATCTGTCACCTGAAACCACTTAAAATAGGTTGG...CCTGTGTGCTGTGCATTCCTGACTGCATTCGGCACTGTTTGCTGAGGGCCTGCA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR-3UTR CCA 90 bp | GTGCTTGCTTCACCCAGAGCAGTGTTTCAAAAAGTGTCAAAAGAGAACTCACGACCCGTTACTCTGGGGTaGCAGAATTCAATTCCTGCC | + |
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Preference number: 2 (lower is better) Translates to: VLASPRAVFQKVSKENSRPVTLG*QNSIPA Trigger: GGCAGGAATTGAATTCTGCCACCCCAGAGTAACGGG...TCGTGAGTTCTCTTTTGACACTTTTTGAAACACTGCTCTGGGTGAAGCAAGCAC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR-3UTR CCA 90 bp | CAGGAACAAATGAATCCGCTTTTCCTCGGCCATCATCCCCTCCTGTGTGGGACTAAACTCAGAATCCAATaGAAAATAAGCTCGGCCACA | + |
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Preference number: 2 (lower is better) Translates to: QEQMNPLFLGHHPLLCGTKLRIQ*KISSAT Trigger: TGTGGCCGAGCTTATTTTCCATTGGATTCTGAGTTT...AGTCCCACACAGGAGGGGATGATGGCCGAGGAAAAGCGGATTCATTTGTTCCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR CAA 90 bp | CCAGGGTTAGCCAGTCGTCCAGGATCTTTAGTAGCCACAATGTGCTaGCTTCACCCAGAGCAGTGTTTCAAAAAGTGTCAAAAGAGAACT | + |
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Preference number: 2 (lower is better) Translates to: PGLASRPGSLVATMC*LHPEQCFKKCQKRT Trigger: AGTTCTCTTTTGACACTTTTTGAAACACTGCTCTGGGTGAAGCAAGCACATTGTGGCTACTAAAGATCCTGGACGACTGGCTAACCCTGG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR-3UTR TCA 90 bp | GTGCTTGCTTCACCCAGAGCAGTGTTTCAAAAAGTGTCAAAAGAGAACTCACGAACCACTGGTCTCCTGTaGAGTTATTTGTCCTGGGGA | + |
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Preference number: 2 (lower is better) Translates to: VLASPRAVFQKVSKENSRTTGLL*SYLSWG Trigger: TCCCCAGGACAAATAACTTCACAGGAGACCAGTGGT...TCGTGAGTTCTCTTTTGACACTTTTTGAAACACTGCTCTGGGTGAAGCAAGCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR-3UTR CCA 90 bp | CACGATCTTAGCAAACGGTCCAGTCAACAAGCACTTGCCATCCTTTATTTTTCTAGGACGGGAAGCAATTaGAACCCTCAGACACTGCTG | + |
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Preference number: 2 (lower is better) Translates to: HDLSKRSSQQALAILYFSRTGSN*NPQTLL Trigger: CAGCAGTGTCTGAGGGTTCCAATTGCTTCCCGTCCT...AGAAAAATAAAGGATGGCAAGTGCTTGTTGACTGGACCGTTTGCTAAGATCGTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR-3UTR CCA 90 bp | GTGCTTGCTTCACCCAGAGCAGTGTTTCAAAAAGTGTCAAAAGAGAACTCACGAGGCAGTGCTTTTAACTaGGGACAAAGGACATGGAGG | + |
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Preference number: 2 (lower is better) Translates to: VLASPRAVFQKVSKENSRGSAFN*GQRTWR Trigger: CCTCCATGTCCTTTGTCCCCAGTTAAAAGCACTGCC...TCGTGAGTTCTCTTTTGACACTTTTTGAAACACTGCTCTGGGTGAAGCAAGCAC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR-3UTR TCA 90 bp | CACGATCTTAGCAAACGGTCCAGTCAACAAGCACTTGCCATCCTTTATTTTTCTTCTGCAGTCAGATCCTaGTGTCATCACAGCAACAGG | + |
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Preference number: 2 (lower is better) Translates to: HDLSKRSSQQALAILYFSSAVRS*CHHSNR Trigger: CCTGTTGCTGTGATGACATCAGGATCTGACTGCAGA...AGAAAAATAAAGGATGGCAAGTGCTTGTTGACTGGACCGTTTGCTAAGATCGTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR-3UTR GCA 90 bp | CCAGGATCTTTAGTAGCCACAATGTGCTTGCTTCACCCAGAGCAGTGTTTCAAATTCTTTTCTCCCCTCTaGAGTCAGATCCTGATGTCA | + |
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Preference number: 2 (lower is better) Translates to: PGSLVATMCLLHPEQCFKFFSPL*SQILMS Trigger: TGACATCAGGATCTGACTGCAGAGGGGAGAAAAGAA...TTTGAAACACTGCTCTGGGTGAAGCAAGCACATTGTGGCTACTAAAGATCCTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR-3UTR CCA 90 bp | CCGTTACTCTGGGGTGGCAGAATTCAATTCCTGCCAATCAACCTAGTTATTCTTGCCAGTGAGGACCACTaGTCTCCTGTGAAGTTATTT | + |
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Preference number: 2 (lower is better) Translates to: PLLWGGRIQFLPINLVILASEDH*SPVKLF Trigger: AAATAACTTCACAGGAGACCAGTGGTCCTCACTGGC...AAGAATAACTAGGTTGATTGGCAGGAATTGAATTCTGCCACCCCAGAGTAACGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR-3UTR CCA 90 bp | CACGATCTTAGCAAACGGTCCAGTCAACAAGCACTTGCCATCCTTTATTTTTCTTGGGGACAAAGGACATaGAGGCAAACAAGTCAGAGA | + |
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Preference number: 2 (lower is better) Translates to: HDLSKRSSQQALAILYFSWGQRT*RQTSQR Trigger: TCTCTGACTTGTTTGCCTCCATGTCCTTTGTCCCCA...AGAAAAATAAAGGATGGCAAGTGCTTGTTGACTGGACCGTTTGCTAAGATCGTG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR-3UTR TCA 90 bp | CACGATCTTAGCAAACGGTCCAGTCAACAAGCACTTGCCATCCTTTATTTTTCTGGTGTAGAAAACATCTaGGAACCAGACAGAAGTAAG | + |
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Preference number: 2 (lower is better) Translates to: HDLSKRSSQQALAILYFSGVENI*EPDRSK Trigger: CTTACTTCTGTCTGGTTCTCAGATGTTTTCTACACC...AGAAAAATAAAGGATGGCAAGTGCTTGTTGACTGGACCGTTTGCTAAGATCGTG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR-3UTR CCA 90 bp | ACTTTGTACATATCTAGGGCTGGTGAATCTCACACTTCCAAGCTCACACGGAGCTCTGGTACAGAACTATaGTTTTGCTTCAGAATTACT | + |
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Preference number: 2 (lower is better) Translates to: TLYISRAGESHTSKLTRSSGTEL*FCFRIT Trigger: AGTAATTCTGAAGCAAAACCATAGTTCTGTACCAGA...GCTCCGTGTGAGCTTGGAAGTGTGAGATTCACCAGCCCTAGATATGTACAAAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR CAA 90 bp | ACGGTCCAGTCAACAAGCACTTGCCATCCTTTATTTTTCTGTTACTaGAGGGCTAGTCACTTTAAAAATCAGAACCAAACCACAATTGCT | + |
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Preference number: 2 (lower is better) Translates to: TVQSTSTCHPLFFCY*RASHFKNQNQTTIA Trigger: AGCAATTGTGGTTTGGTTCTGATTTTTAAAGTGACTAGCCCTCAAGTAACAGAAAAATAAAGGATGGCAAGTGCTTGTTGACTGGACCGT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR-3UTR GCA 90 bp | GTGCTTGCTTCACCCAGAGCAGTGTTTCAAAAAGTGTCAAAAGAGAACTCACGAAGAAAAGGTTTCCTGTaGTATAAACCACCTTTAATC | + |
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Preference number: 2 (lower is better) Translates to: VLASPRAVFQKVSKENSRRKGFL*YKPPLI Trigger: GATTAAAGGTGGTTTATAGCACAGGAAACCTTTTCT...TCGTGAGTTCTCTTTTGACACTTTTTGAAACACTGCTCTGGGTGAAGCAAGCAC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR CAA 90 bp | AAATTTCCAATGCATTTTTGTTCCACAGAAGTACATTTGATTCTTTaGTTACAGGAACAAATGAATCCGCTTTTCCTCGGCCATCATCCC | + |
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Preference number: 2 (lower is better) Translates to: KFPMHFCSTEVHLIL*LQEQMNPLFLGHHP Trigger: GGGATGATGGCCGAGGAAAAGCGGATTCATTTGTTCCTGTAACAAAAGAATCAAATGTACTTCTGTGGAACAAAAATGCATTGGAAATTT 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR CCA 72 bp | CAGGCCTATCGCTGGCATCCCTCACTCTCTGGTGGCTaGCGGGGAGGTAGGCTGCTGACATCCCTGTGGGCA | + |
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Preference number: 3 (lower is better) Translates to: QAYRWHPSLSGG*RGGRLLTSLWA Trigger: TGCCCACAGGGATGTCAGCAGCCTACCTCCCCGCCAGCCACCAGAGAGTGAGGGATGCCAGCGATAGGCCTG 65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
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| 3UTR CCA 72 bp | TTACCGCAAACAGCGCTGCTTGGCCAGGCCTATCGCTaGCATCCCTCACTCTCTGGTGGCTGGCGGGGAGGT | + |
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Preference number: 3 (lower is better) Translates to: LPQTALLGQAYR*HPSLSGGWRGG Trigger: ACCTCCCCGCCAGCCACCAGAGAGTGAGGGATGCCAGCGATAGGCCTGGCCAAGCAGCGCTGTTTGCGGTAA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
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| 3UTR GCA 72 bp | TTGGTCCCCTGCAGGCCCTCAGCAAACAGTGCCGAATaGAGTCAGGAATGCACAGCACACAGGAAGCTTAGC | + |
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Preference number: 3 (lower is better) Translates to: LVPCRPSANSAE*SQECTAHRKLS Trigger: GCTAAGCTTCCTGTGTGCTGTGCATTCCTGACTGCATTCGGCACTGTTTGCTGAGGGCCTGCAGGGGACCAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR GCA 72 bp | TGGCAAGGACGGGAAGCAATTGGAACCCTCAGACACTaGTGGTGGAAATGTAAAATGGCGCCCTCGCTGTGG | + |
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Preference number: 3 (lower is better) Translates to: WQGREAIGTLRH*WWKCKMAPSLW Trigger: CCACAGCGAGGGCGCCATTTTACATTTCCACCAGCAGTGTCTGAGGGTTCCAATTGCTTCCCGTCCTTGCCA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR GCA 72 bp | TTTCTCCTTGGTCCCCTGCAGGCCCTCAGCAAACAGTaGCGAATGCAGTCAGGAATGCACAGCACACAGGAA | + |
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Preference number: 3 (lower is better) Translates to: FLLGPLQALSKQ*RMQSGMHSTQE Trigger: TTCCTGTGTGCTGTGCATTCCTGACTGCATTCGGCACTGTTTGCTGAGGGCCTGCAGGGGACCAAGGAGAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR GCA 72 bp | AACCTGTCAGCTGGCTTCCTAACGTGGGCAAGTTCTTaGTGTACAGCCCTCTCCACTCCTATACCTCCTCCC | + |
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Preference number: 3 (lower is better) Translates to: NLSAGFLTWASS*CTALSTPIPPP Trigger: GGGAGGAGGTATAGGAGTGGAGAGGGCTGTACAGCAAGAACTTGCCCACGTTAGGAAGCCAGCTGACAGGTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR TCA 72 bp | ACCACTCCCCAGCCGAGCCACAGGCCCACAGTAAGATaGGGAGCAGATAAGGCAGAGGTAGAAACTAAGAAG | + |
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Preference number: 3 (lower is better) Translates to: TTPQPSHRPTVR*GADKAEVETKK Trigger: CTTCTTAGTTTCTACCTCTGCCTTATCTGCTCCTCATCTTACTGTGGGCCTGTGGCTCGGCTGGGGAGTGGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR CCA 72 bp | GGACGGGAAGCAATTGGAACCCTCAGACACTGCTGGTaGAAATGTAAAATGGCGCCCTCGCTGTGGGAAACA | + |
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Preference number: 3 (lower is better) Translates to: GREAIGTLRHCW*KCKMAPSLWET Trigger: TGTTTCCCACAGCGAGGGCGCCATTTTACATTTCCACCAGCAGTGTCTGAGGGTTCCAATTGCTTCCCGTCC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR TCA 72 bp | GGAAGCTTAGCACTGGTGAGGCTCTCTCTGTGCCAGTaGGGACCACTGGTCTCCTGTGAAGTTATTTGTCCT | + |
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Preference number: 3 (lower is better) Translates to: GSLALVRLSLCQ*GPLVSCEVICP Trigger: AGGACAAATAACTTCACAGGAGACCAGTGGTCCTCACTGGCACAGAGAGAGCCTCACCAGTGCTAAGCTTCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| 3UTR CCA 72 bp | GAATCCGCTTTTCCTCGGCCATCATCCCCTCCTGTGTaGGACTATGAAGGCAAGGAGCTTAAAGCTTTCTGT | + |
|
Preference number: 3 (lower is better) Translates to: ESAFPRPSSPPV*DYEGKELKAFC Trigger: ACAGAAAGCTTTAAGCTCCTTGCCTTCATAGTCCCACACAGGAGGGGATGATGGCCGAGGAAAAGCGGATTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
||
| 3UTR CCA 72 bp | AGAATTCAATTCCTGCCAATCAACCTAGTTATTCTTTaGAACCACTCCCCAGCCGAGCCACAGGCCCACAGT | + |
|
Preference number: 3 (lower is better) Translates to: RIQFLPINLVIL*NHSPAEPQAHS Trigger: ACTGTGGGCCTGTGGCTCGGCTGGGGAGTGGTTCCAAAGAATAACTAGGTTGATTGGCAGGAATTGAATTCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
||
| 3UTR TCA 72 bp | ACGGCTGGGATGCACGAAGTTTCATTACAGCTCACTTaGAGGTTGACCTTGTCATGTCAGAGGGCTATGGAA | + |
|
Preference number: 3 (lower is better) Translates to: TAGMHEVSLQLT*RLTLSCQRAME Trigger: TTCCATAGCCCTCTGACATGACAAGGTCAACCTTCAAGTGAGCTGTAATGAAACTTCGTGCATCCCAGCCGT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
||
| 3UTR CCA 72 bp | AAGGGTCTGAGGTTGTTGCCTCCCGTTACTCTGGGGTaGCAGAATTCAATTCCTGCCAATCAACCTAGTTAT | + |
|
Preference number: 3 (lower is better) Translates to: KGLRLLPPVTLG*QNSIPANQPSY Trigger: ATAACTAGGTTGATTGGCAGGAATTGAATTCTGCCACCCCAGAGTAACGGGAGGCAACAACCTCAGACCCTT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
||
| 3UTR-3UTR CAA 90 bp | CCGTTACTCTGGGGTGGCAGAATTCAATTCCTGCCAATCAACCTAGTTATTCTTAAGGACGGGAAGCAATaGGAACCCTCAGACACTGCT | + |
|
Preference number: 3 (lower is better) Translates to: PLLWGGRIQFLPINLVILKDGKQ*EPSDTA Trigger: AGCAGTGTCTGAGGGTTCCAATTGCTTCCCGTCCTT...AAGAATAACTAGGTTGATTGGCAGGAATTGAATTCTGCCACCCCAGAGTAACGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
||
| 3UTR-3UTR CAA 90 bp | CACGATCTTAGCAAACGGTCCAGTCAACAAGCACTTGCCATCCTTTATTTTTCTCTTTCTCTTTTCTCCTaGGTCCCCTGCAGGCCCTCA | + |
|
Preference number: 3 (lower is better) Translates to: HDLSKRSSQQALAILYFSLSLFS*VPCRPS Trigger: TGAGGGCCTGCAGGGGACCAAGGAGAAAAGAGAAAG...AGAAAAATAAAGGATGGCAAGTGCTTGTTGACTGGACCGTTTGCTAAGATCGTG 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
||
| 3UTR GCA 72 bp | TTAGCCAGTCGTCCAGGATCTTTAGTAGCCACAATGTaGTTGCTTCACCCAGAGCAGTGTTTCAAAAAGTGT | + |
|
Preference number: 3 (lower is better) Translates to: LASRPGSLVATM*LLHPEQCFKKC Trigger: ACACTTTTTGAAACACTGCTCTGGGTGAAGCAAGCACATTGTGGCTACTAAAGATCCTGGACGACTGGCTAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
||
| 3UTR CCA 72 bp | CCAACCTATTTTAAGTGGTTTCAGGTGACAGATTATTaGCCCACACTGAGATACAGGGTGGTGGAGAAAAGG | + |
|
Preference number: 3 (lower is better) Translates to: PTYFKWFQVTDY*PTLRYRVVEKR Trigger: CCTTTTCTCCACCACCCTGTATCTCAGTGTGGGCCAATAATCTGTCACCTGAAACCACTTAAAATAGGTTGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
||
| 3UTR CCA 72 bp | TCTGTAAAAACTGCTGCAAGGAAACTCAGAATCCAATaGAAAATAAGCTCGGCCACAGCCAAACCTGTCAGC | + |
|
Preference number: 3 (lower is better) Translates to: SVKTAARKLRIQ*KISSATAKPVS Trigger: GCTGACAGGTTTGGCTGTGGCCGAGCTTATTTTCCATTGGATTCTGAGTTTCCTTGCAGCAGTTTTTACAGA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
||
| 3UTR CCA 72 bp | CAACAGGACAGTCAAGAAAGCCCAACCTATTTTAAGTaGTTTCAGGTGACAGATTATTGGCCCACACTGAGA | + |
|
Preference number: 3 (lower is better) Translates to: QQDSQESPTYFK*FQVTDYWPTLR Trigger: TCTCAGTGTGGGCCAATAATCTGTCACCTGAAACCACTTAAAATAGGTTGGGCTTTCTTGACTGTCCTGTTG 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
||
| 3UTR-3UTR CAA 90 bp | CCGTTACTCTGGGGTGGCAGAATTCAATTCCTGCCAATCAACCTAGTTATTCTTCTAGGGAAAGCATCTTaGGAGTTTGGTTTGAGATAC | + |
|
Preference number: 3 (lower is better) Translates to: PLLWGGRIQFLPINLVILLGKAS*EFGLRY Trigger: GTATCTCAAACCAAACTCCAAAGATGCTTTCCCTAG...AAGAATAACTAGGTTGATTGGCAGGAATTGAATTCTGCCACCCCAGAGTAACGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
||
| 3UTR TCA 72 bp | ATCAGAACCAAACCACAATTGCTACTAACCTACCAATaGTTCCTATCTAGTTCCTCTGTAACAGTCCTGAAG | + |
|
Preference number: 3 (lower is better) Translates to: IRTKPQLLLTYQ*FLSSSSVTVLK Trigger: CTTCAGGACTGTTACAGAGGAACTAGATAGGAATCATTGGTAGGTTAGTAGCAATTGTGGTTTGGTTCTGAT 40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
||
| 3UTR GCA 72 bp | GAAGGCAAGGAGCTTAAAGCTTTCTGTAAAAACTGCTaGAAGGAAACTCAGAATCCAATGGAAAATAAGCTC | + |
|
Preference number: 3 (lower is better) Translates to: EGKELKAFCKNC*KETQNPMENKL Trigger: GAGCTTATTTTCCATTGGATTCTGAGTTTCCTTGCAGCAGTTTTTACAGAAAGCTTTAAGCTCCTTGCCTTC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
||
| 3UTR GCA 72 bp | TATGAAGGCAAGGAGCTTAAAGCTTTCTGTAAAAACTaGTGCAAGGAAACTCAGAATCCAATGGAAAATAAG | + |
|
Preference number: 3 (lower is better) Translates to: YEGKELKAFCKN*CKETQNPMENK Trigger: CTTATTTTCCATTGGATTCTGAGTTTCCTTGCAGCAGTTTTTACAGAAAGCTTTAAGCTCCTTGCCTTCATA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
||
| CDS-3UTR TCA 90 bp | CGCTGGCATCCCTCACTCTCTGGTGGCTGGCGGGGAGGTAGGCTGCTGACATCCGTGTTATGGGGCAGATaGAATTGGTTTGGCTCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: RWHPSLSGGWRGGRLLTSVLWGR*NWFGSG Trigger: CCCAGAGCCAAACCAATTTCATCTGCCCCATAACAC...GGATGTCAGCAGCCTACCTCCCCGCCAGCCACCAGAGAGTGAGGGATGCCAGCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
||
| CDS-3UTR GCA 90 bp | CGCTGGCATCCCTCACTCTCTGGTGGCTGGCGGGGAGGTAGGCTGCTGACATCCTTGGGTTTCACTAATTaGTTCTTCAGCTCCCTCAGC | + |
|
Preference number: 4 (lower is better) Translates to: RWHPSLSGGWRGGRLLTSLGFTN*FFSSLS Trigger: GCTGAGGGAGCTGAAGAAGCAATTAGTGAAACCCAA...GGATGTCAGCAGCCTACCTCCCCGCCAGCCACCAGAGAGTGAGGGATGCCAGCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227173.2 |
||
| CDS-3UTR GCA 90 bp | CGCTGGCATCCCTCACTCTCTGGTGGCTGGCGGGGAGGTAGGCTGCTGACATCCGCTTGGATTCAATCATaGGAACAATGGCTTCCTCTT | + |
|
Preference number: 4 (lower is better) Translates to: RWHPSLSGGWRGGRLLTSAWIQS*EQWLPL Trigger: AAGAGGAAGCCATTGTTCGCATGATTGAATCCAAGC...GGATGTCAGCAGCCTACCTCCCCGCCAGCCACCAGAGAGTGAGGGATGCCAGCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
||
| CDS-3UTR GCA 90 bp | CGCTGGCATCCCTCACTCTCTGGTGGCTGGCGGGGAGGTAGGCTGCTGACATCCTACCATCTCGTTTATTaGCTGCTCTACTGGAATCCT | + |
|
Preference number: 4 (lower is better) Translates to: RWHPSLSGGWRGGRLLTSYHLVY*LLYWNP Trigger: AGGATTCCAGTAGAGCAGGCAATAAACGAGATGGTA...GGATGTCAGCAGCCTACCTCCCCGCCAGCCACCAGAGAGTGAGGGATGCCAGCG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227173.2 |
||
| CDS-3UTR TCA 90 bp | CGCTGGCATCCCTCACTCTCTGGTGGCTGGCGGGGAGGTAGGCTGCTGACATCCTTCTCTCTGTCTGCATaGATACCATATTGCTTCTTC | + |
|
Preference number: 4 (lower is better) Translates to: RWHPSLSGGWRGGRLLTSFSLSA*IPYCFF Trigger: GAAGAAGCAATATGGTATTCATGCAGACAGAGAGAA...GGATGTCAGCAGCCTACCTCCCCGCCAGCCACCAGAGAGTGAGGGATGCCAGCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079703.11 |
||
| CDS-3UTR CCA 90 bp | CGCTGGCATCCCTCACTCTCTGGTGGCTGGCGGGGAGGTAGGCTGCTGACATCCCAGATGAAATTGGTTTaGCTCTGGGTCACAATCATA | + |
|
Preference number: 4 (lower is better) Translates to: RWHPSLSGGWRGGRLLTSQMKLV*LWVTII Trigger: TATGATTGTGACCCAGAGCCAAACCAATTTCATCTG...GGATGTCAGCAGCCTACCTCCCCGCCAGCCACCAGAGAGTGAGGGATGCCAGCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
||
| CDS-3UTR CCA 90 bp | CGCTGGCATCCCTCACTCTCTGGTGGCTGGCGGGGAGGTAGGCTGCTGACATCCTCTTCCTCTTATGCTTaGATTCAATCATGCGAACAA | + |
|
Preference number: 4 (lower is better) Translates to: RWHPSLSGGWRGGRLLTSSSSYA*IQSCEQ Trigger: TTGTTCGCATGATTGAATCCAAGCATAAGAGGAAGA...GGATGTCAGCAGCCTACCTCCCCGCCAGCCACCAGAGAGTGAGGGATGCCAGCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
||
| CDS-3UTR CCA 90 bp | CGCTGGCATCCCTCACTCTCTGGTGGCTGGCGGGGAGGTAGGCTGCTGACATCCGTCTTCCATCTTCTTTaGGTTTCACTAATTGCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: RWHPSLSGGWRGGRLLTSVFHLL*VSLIAS Trigger: AGAAGCAATTAGTGAAACCCAAAGAAGATGGAAGAC...GGATGTCAGCAGCCTACCTCCCCGCCAGCCACCAGAGAGTGAGGGATGCCAGCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227173.2 |
||
| CDS-3UTR TCA 90 bp | TTACAATTAGCCTTCAAGGGTTACCGCAAACAGCGCTGCTTGGCCAGGCCTATCGTGTTATGGGGCAGATaGAATTGGTTTGGCTCTGGG | + |
|
Preference number: 4 (lower is better) Translates to: LQLAFKGYRKQRCLARPIVLWGR*NWFGSG Trigger: CCCAGAGCCAAACCAATTTCATCTGCCCCATAACAC...GATAGGCCTGGCCAAGCAGCGCTGTTTGCGGTAACCCTTGAAGGCTAATTGTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
||
| CDS-3UTR CCA 90 bp | TTACAATTAGCCTTCAAGGGTTACCGCAAACAGCGCTGCTTGGCCAGGCCTATCGGCTACAGCCAATTTTaGGGCAACAGGCCTTCTTCT | + |
|
Preference number: 4 (lower is better) Translates to: LQLAFKGYRKQRCLARPIGYSQF*GNRPSS Trigger: AGAAGAAGGCCTGTTGCCCCAAAATTGGCTGTAGCC...GATAGGCCTGGCCAAGCAGCGCTGTTTGCGGTAACCCTTGAAGGCTAATTGTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
||
| 3UTR CAA 72 bp | CAGAATTCAATTCCTGCCAATCAACCTAGTTATTCTTaGGAACCACTCCCCAGCCGAGCCACAGGCCCACAG | + |
|
Preference number: 4 (lower is better) Translates to: QNSIPANQPSYS*EPLPSRATGPQ Trigger: CTGTGGGCCTGTGGCTCGGCTGGGGAGTGGTTCCAAAGAATAACTAGGTTGATTGGCAGGAATTGAATTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
||
| CDS-3UTR CCA 90 bp | TTACAATTAGCCTTCAAGGGTTACCGCAAACAGCGCTGCTTGGCCAGGCCTATCTATTGCCTGCTCTACTaGAATCCTTATTCGGGTCGA | + |
|
Preference number: 4 (lower is better) Translates to: LQLAFKGYRKQRCLARPIYCLLY*NPYSGR Trigger: TCGACCCGAATAAGGATTCCAGTAGAGCAGGCAATA...GATAGGCCTGGCCAAGCAGCGCTGTTTGCGGTAACCCTTGAAGGCTAATTGTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227173.2 |
||
| CDS-3UTR CCA 90 bp | TTACAATTAGCCTTCAAGGGTTACCGCAAACAGCGCTGCTTGGCCAGGCCTATCTTTTTCTTCTTGTTGTaGCTCTCGATTGCCCTTCTC | + |
|
Preference number: 4 (lower is better) Translates to: LQLAFKGYRKQRCLARPIFFFLL*LSIALL Trigger: GAGAAGGGCAATCGAGAGCCACAACAAGAAGAAAAA...GATAGGCCTGGCCAAGCAGCGCTGTTTGCGGTAACCCTTGAAGGCTAATTGTAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
||
| CDS-3UTR CCA 90 bp | TTACAATTAGCCTTCAAGGGTTACCGCAAACAGCGCTGCTTGGCCAGGCCTATCCAGATGAAATTGGTTTaGCTCTGGGTCACAATCATA | + |
|
Preference number: 4 (lower is better) Translates to: LQLAFKGYRKQRCLARPIQMKLV*LWVTII Trigger: TATGATTGTGACCCAGAGCCAAACCAATTTCATCTG...GATAGGCCTGGCCAAGCAGCGCTGTTTGCGGTAACCCTTGAAGGCTAATTGTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
||
| CDS-3UTR CCA 90 bp | TTACAATTAGCCTTCAAGGGTTACCGCAAACAGCGCTGCTTGGCCAGGCCTATCCAATCATGCGAACAATaGCTTCCTCTTCGTATGTAT | + |
|
Preference number: 4 (lower is better) Translates to: LQLAFKGYRKQRCLARPIQSCEQ*LPLRMY Trigger: ATACATACGAAGAGGAAGCCATTGTTCGCATGATTG...GATAGGCCTGGCCAAGCAGCGCTGTTTGCGGTAACCCTTGAAGGCTAATTGTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
||
| 3UTR CAA 72 bp | GCCAGTCGTCCAGGATCTTTAGTAGCCACAATGTGCTaGCTTCACCCAGAGCAGTGTTTCAAAAAGTGTCAA | + |
|
Preference number: 4 (lower is better) Translates to: ASRPGSLVATMC*LHPEQCFKKCQ Trigger: TTGACACTTTTTGAAACACTGCTCTGGGTGAAGCAAGCACATTGTGGCTACTAAAGATCCTGGACGACTGGC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
||
| CDS-3UTR TCA 90 bp | TTACAATTAGCCTTCAAGGGTTACCGCAAACAGCGCTGCTTGGCCAGGCCTATCCGTTCTTCTTTTACATaGTTGATTGTAGACTGCACA | + |
|
Preference number: 4 (lower is better) Translates to: LQLAFKGYRKQRCLARPIRSSFT*LIVDCT Trigger: TGTGCAGTCTACAATCAATCATGTAAAAGAAGAACG...GATAGGCCTGGCCAAGCAGCGCTGTTTGCGGTAACCCTTGAAGGCTAATTGTAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
||
| CDS-3UTR CCA 90 bp | TTACAATTAGCCTTCAAGGGTTACCGCAAACAGCGCTGCTTGGCCAGGCCTATCTCTTCCTCTTATGCTTaGATTCAATCATGCGAACAA | + |
|
Preference number: 4 (lower is better) Translates to: LQLAFKGYRKQRCLARPISSSYA*IQSCEQ Trigger: TTGTTCGCATGATTGAATCCAAGCATAAGAGGAAGA...GATAGGCCTGGCCAAGCAGCGCTGTTTGCGGTAACCCTTGAAGGCTAATTGTAA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
||
| CDS-3UTR TCA 90 bp | ACTTTGTACATATCTAGGGCTGGTGAATCTCACACTTCCAAGCTCACACGGAGCCGTTCTTCTTTTACATaGTTGATTGTAGACTGCACA | + |
|
Preference number: 4 (lower is better) Translates to: TLYISRAGESHTSKLTRSRSSFT*LIVDCT Trigger: TGTGCAGTCTACAATCAATCATGTAAAAGAAGAACG...GCTCCGTGTGAGCTTGGAAGTGTGAGATTCACCAGCCCTAGATATGTACAAAGT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
||
| 3UTR CAA 72 bp | TCAACAAGCACTTGCCATCCTTTATTTTTCTGTTACTaGAGGGCTAGTCACTTTAAAAATCAGAACCAAACC | + |
|
Preference number: 4 (lower is better) Translates to: STSTCHPLFFCY*RASHFKNQNQT Trigger: GGTTTGGTTCTGATTTTTAAAGTGACTAGCCCTCAAGTAACAGAAAAATAAAGGATGGCAAGTGCTTGTTGA 38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
||
| CDS-3UTR CAA 90 bp | CGCTGGCATCCCTCACTCTCTGGTGGCTGGCGGGGAGGTAGGCTGCTGACATCCTGGCTACAGCCAATTTaGGGGCAACAGGCCTTCTTC | + |
|
Preference number: 5 (lower is better) Translates to: RWHPSLSGGWRGGRLLTSWLQPI*GQQAFF Trigger: GAAGAAGGCCTGTTGCCCCAAAATTGGCTGTAGCCA...GGATGTCAGCAGCCTACCTCCCCGCCAGCCACCAGAGAGTGAGGGATGCCAGCG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
||
| CDS-3UTR CAA 90 bp | CGCTGGCATCCCTCACTCTCTGGTGGCTGGCGGGGAGGTAGGCTGCTGACATCCATGGGGCAGATGAAATaGGTTTGGCTCTGGGTCACA | + |
|
Preference number: 5 (lower is better) Translates to: RWHPSLSGGWRGGRLLTSMGQMK*VWLWVT Trigger: TGTGACCCAGAGCCAAACCAATTTCATCTGCCCCAT...GGATGTCAGCAGCCTACCTCCCCGCCAGCCACCAGAGAGTGAGGGATGCCAGCG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
||
| CDS-3UTR CAA 90 bp | CGCTGGCATCCCTCACTCTCTGGTGGCTGGCGGGGAGGTAGGCTGCTGACATCCACTACTCACTTCAGTTaGAGTCTCCACAAGGTCCAA | + |
|
Preference number: 5 (lower is better) Translates to: RWHPSLSGGWRGGRLLTSTTHFS*SLHKVQ Trigger: TTGGACCTTGTGGAGACTCAAACTGAAGTGAGTAGT...GGATGTCAGCAGCCTACCTCCCCGCCAGCCACCAGAGAGTGAGGGATGCCAGCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
||
| CDS-3UTR CAA 90 bp | CGCTGGCATCCCTCACTCTCTGGTGGCTGGCGGGGAGGTAGGCTGCTGACATCCATACCATCTCGTTTATaGCCTGCTCTACTGGAATCC | + |
|
Preference number: 5 (lower is better) Translates to: RWHPSLSGGWRGGRLLTSIPSRL*PALLES Trigger: GGATTCCAGTAGAGCAGGCAATAAACGAGATGGTAT...GGATGTCAGCAGCCTACCTCCCCGCCAGCCACCAGAGAGTGAGGGATGCCAGCG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227173.2 |
||
| CDS-3UTR CAA 90 bp | CGCTGGCATCCCTCACTCTCTGGTGGCTGGCGGGGAGGTAGGCTGCTGACATCCTTCTTCCTCTTATGCTaGGATTCAATCATGCGAACA | + |
|
Preference number: 5 (lower is better) Translates to: RWHPSLSGGWRGGRLLTSFFLLC*DSIMRT Trigger: TGTTCGCATGATTGAATCCAAGCATAAGAGGAAGAA...GGATGTCAGCAGCCTACCTCCCCGCCAGCCACCAGAGAGTGAGGGATGCCAGCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
||
| CDS-3UTR CAA 90 bp | CGCTGGCATCCCTCACTCTCTGGTGGCTGGCGGGGAGGTAGGCTGCTGACATCCTGTCTTCCATCTTCTTaGGGTTTCACTAATTGCTTC | + |
|
Preference number: 5 (lower is better) Translates to: RWHPSLSGGWRGGRLLTSCLPSS*GFTNCF Trigger: GAAGCAATTAGTGAAACCCAAAGAAGATGGAAGACA...GGATGTCAGCAGCCTACCTCCCCGCCAGCCACCAGAGAGTGAGGGATGCCAGCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227173.2 |
||
| CDS-3UTR CAA 90 bp | TTACAATTAGCCTTCAAGGGTTACCGCAAACAGCGCTGCTTGGCCAGGCCTATCTGGCTACAGCCAATTTaGGGGCAACAGGCCTTCTTC | + |
|
Preference number: 5 (lower is better) Translates to: LQLAFKGYRKQRCLARPIWLQPI*GQQAFF Trigger: GAAGAAGGCCTGTTGCCCCAAAATTGGCTGTAGCCA...GATAGGCCTGGCCAAGCAGCGCTGTTTGCGGTAACCCTTGAAGGCTAATTGTAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
||
| CDS TCA 90 bp | GTGGCTCTCGATTGCCCTTCTCAGGGCTTCATCCGGAATGAGATCTaGCATTCTCATGTCTGTGTGGCTACAGCCAATTTTGGGGCAACA | + |
|
Preference number: 5 (lower is better) Translates to: VALDCPSQGFIRNEI*HSHVCVATANFGAT Trigger: TGTTGCCCCAAAATTGGCTGTAGCCACACAGACATGAGAATGTCAGATCTCATTCCGGATGAAGCCCTGAGAAGGGCAATCGAGAGCCAC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
||
| CDS-3UTR CAA 90 bp | TCTCTCTGTGCCAGTGAGGACCACTGGTCTCCTGTGAAGTTATTTGTCCTGGGGTCCCTCAGCTGTTGCTaGAACTGCACGAACTTTTCA | + |
|
Preference number: 5 (lower is better) Translates to: SLCASEDHWSPVKLFVLGSLSCC*NCTNFS Trigger: TGAAAAGTTCGTGCAGTTCAAGCAACAGCTGAGGGA...CCCCAGGACAAATAACTTCACAGGAGACCAGTGGTCCTCACTGGCACAGAGAGA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
||
| CDS-3UTR CAA 90 bp | TTACAATTAGCCTTCAAGGGTTACCGCAAACAGCGCTGCTTGGCCAGGCCTATCATGGGGCAGATGAAATaGGTTTGGCTCTGGGTCACA | + |
|
Preference number: 5 (lower is better) Translates to: LQLAFKGYRKQRCLARPIMGQMK*VWLWVT Trigger: TGTGACCCAGAGCCAAACCAATTTCATCTGCCCCAT...GATAGGCCTGGCCAAGCAGCGCTGTTTGCGGTAACCCTTGAAGGCTAATTGTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
||
| CDS-3UTR CAA 90 bp | TTACAATTAGCCTTCAAGGGTTACCGCAAACAGCGCTGCTTGGCCAGGCCTATCTCCCTCAGCTGTTGCTaGAACTGCACGAACTTTTCA | + |
|
Preference number: 5 (lower is better) Translates to: LQLAFKGYRKQRCLARPISLSCC*NCTNFS Trigger: TGAAAAGTTCGTGCAGTTCAAGCAACAGCTGAGGGA...GATAGGCCTGGCCAAGCAGCGCTGTTTGCGGTAACCCTTGAAGGCTAATTGTAA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
||
| CDS TCA 90 bp | TCTTGTTGTGGCTCTCGATTGCCCTTCTCAGGGCTTCATCCGGAATaGGATCTGACATTCTCATGTCTGTGTGGCTACAGCCAATTTTGG | + |
|
Preference number: 5 (lower is better) Translates to: SCCGSRLPFSGLHPE*DLTFSCLCGYSQFW Trigger: CCAAAATTGGCTGTAGCCACACAGACATGAGAATGTCAGATCTCATTCCGGATGAAGCCCTGAGAAGGGCAATCGAGAGCCACAACAAGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
||
| CDS-3UTR CAA 90 bp | TTACAATTAGCCTTCAAGGGTTACCGCAAACAGCGCTGCTTGGCCAGGCCTATCACTACTCACTTCAGTTaGAGTCTCCACAAGGTCCAA | + |
|
Preference number: 5 (lower is better) Translates to: LQLAFKGYRKQRCLARPITTHFS*SLHKVQ Trigger: TTGGACCTTGTGGAGACTCAAACTGAAGTGAGTAGT...GATAGGCCTGGCCAAGCAGCGCTGTTTGCGGTAACCCTTGAAGGCTAATTGTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
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| CDS-3UTR CAA 90 bp | TTACAATTAGCCTTCAAGGGTTACCGCAAACAGCGCTGCTTGGCCAGGCCTATCAACTCAACCATGGCCTaGTCCATACTGTACTCACTA | + |
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Preference number: 5 (lower is better) Translates to: LQLAFKGYRKQRCLARPINSTMA*SILYSL Trigger: TAGTGAGTACAGTATGGACAAGGCCATGGTTGAGTT...GATAGGCCTGGCCAAGCAGCGCTGTTTGCGGTAACCCTTGAAGGCTAATTGTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
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| CDS-3UTR CAA 90 bp | TTACAATTAGCCTTCAAGGGTTACCGCAAACAGCGCTGCTTGGCCAGGCCTATCTGCATGAATACCATATaGCTTCTTCAGCTCCCTCAG | + |
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Preference number: 5 (lower is better) Translates to: LQLAFKGYRKQRCLARPICMNTI*LLQLPQ Trigger: CTGAGGGAGCTGAAGAAGCAATATGGTATTCATGCA...GATAGGCCTGGCCAAGCAGCGCTGTTTGCGGTAACCCTTGAAGGCTAATTGTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079703.11 |
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| CDS-3UTR CAA 90 bp | TTACAATTAGCCTTCAAGGGTTACCGCAAACAGCGCTGCTTGGCCAGGCCTATCGCAGATGAAATTGGTTaGGCTCTGGGTCACAATCAT | + |
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Preference number: 5 (lower is better) Translates to: LQLAFKGYRKQRCLARPIADEIG*ALGHNH Trigger: ATGATTGTGACCCAGAGCCAAACCAATTTCATCTGC...GATAGGCCTGGCCAAGCAGCGCTGTTTGCGGTAACCCTTGAAGGCTAATTGTAA 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
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| CDS-3UTR CAA 90 bp | ACTTTGTACATATCTAGGGCTGGTGAATCTCACACTTCCAAGCTCACACGGAGCACTACTCACTTCAGTTaGAGTCTCCACAAGGTCCAA | + |
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Preference number: 5 (lower is better) Translates to: TLYISRAGESHTSKLTRSTTHFS*SLHKVQ Trigger: TTGGACCTTGTGGAGACTCAAACTGAAGTGAGTAGT...GCTCCGTGTGAGCTTGGAAGTGTGAGATTCACCAGCCCTAGATATGTACAAAGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| CDS-3UTR CAA 90 bp | TTACAATTAGCCTTCAAGGGTTACCGCAAACAGCGCTGCTTGGCCAGGCCTATCTTCTTCCTCTTATGCTaGGATTCAATCATGCGAACA | + |
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Preference number: 5 (lower is better) Translates to: LQLAFKGYRKQRCLARPIFFLLC*DSIMRT Trigger: TGTTCGCATGATTGAATCCAAGCATAAGAGGAAGAA...GATAGGCCTGGCCAAGCAGCGCTGTTTGCGGTAACCCTTGAAGGCTAATTGTAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
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| CDS GCA 90 bp | TGGCTACAGCCAATTTTGGGGCAACAGGCCTTCTTCTTCCTCTTATaGTTGGATTCAATCATGCGAACAATGGCTTCCTCTTCGTATGTA | + |
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Preference number: 5 (lower is better) Translates to: WLQPILGQQAFFFLL*LDSIMRTMASSSYV Trigger: TACATACGAAGAGGAAGCCATTGTTCGCATGATTGAATCCAAGCATAAGAGGAAGAAGAAGGCCTGTTGCCCCAAAATTGGCTGTAGCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
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| CDS GCA 90 bp | GGGTCGAATTCACTGTGTCTTCCATCTTCTTTGGGTTTCACTAATTaGTTCTTCAGCTCCCTCAGCTGTTGCTTGAACTGCACGAACTTT | + |
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Preference number: 5 (lower is better) Translates to: GSNSLCLPSSLGFTN*FFSSLSCCLNCTNF Trigger: AAAGTTCGTGCAGTTCAAGCAACAGCTGAGGGAGCTGAAGAAGCAATTAGTGAAACCCAAAGAAGATGGAAGACACAGTGAATTCGACCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227173.2 |
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| CDS CCA 90 bp | GGCTTCTTCATTTCCAGCTGTGTTATGGGGCAGATGAAATTGGTTTaGCTCTGGGTCACAATCATATCTTCGTCAACTCCTTCTGTCAGA | + |
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Preference number: 5 (lower is better) Translates to: GFFISSCVMGQMKLV*LWVTIISSSTPSVR Trigger: TCTGACAGAAGGAGTTGACGAAGATATGATTGTGACCCAGAGCCAAACCAATTTCATCTGCCCCATAACACAGCTGGAAATGAAGAAGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
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| CDS CCA 90 bp | TACAGCCAATTTTGGGGCAACAGGCCTTCTTCTTCCTCTTATGCTTaGATTCAATCATGCGAACAATGGCTTCCTCTTCGTATGTATGGC | + |
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Preference number: 5 (lower is better) Translates to: YSQFWGNRPSSSSYA*IQSCEQWLPLRMYG Trigger: GCCATACATACGAAGAGGAAGCCATTGTTCGCATGATTGAATCCAAGCATAAGAGGAAGAAGAAGGCCTGTTGCCCCAAAATTGGCTGTA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
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| CDS-3UTR CAA 90 bp | CCAGGATCTTTAGTAGCCACAATGTGCTTGCTTCACCCAGAGCAGTGTTTCAAAAACTCAACCATGGCCTaGTCCATACTGTACTCACTA | + |
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Preference number: 5 (lower is better) Translates to: PGSLVATMCLLHPEQCFKNSTMA*SILYSL Trigger: TAGTGAGTACAGTATGGACAAGGCCATGGTTGAGTT...TTTGAAACACTGCTCTGGGTGAAGCAAGCACATTGTGGCTACTAAAGATCCTGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000168722.3 |
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| CDS GCA 90 bp | TGGGGCAACAGGCCTTCTTCTTCCTCTTATGCTTGGATTCAATCATaGGAACAATGGCTTCCTCTTCGTATGTATGGCCACACATTTTAT | + |
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Preference number: 5 (lower is better) Translates to: WGNRPSSSSYAWIQS*EQWLPLRMYGHTFY Trigger: ATAAAATGTGTGGCCATACATACGAAGAGGAAGCCATTGTTCGCATGATTGAATCCAAGCATAAGAGGAAGAAGAAGGCCTGTTGCCCCA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
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| CDS TCA 90 bp | ATATCTTCGTCAACTCCTTCTGTCAGATCATTCTCTCTGTCTGCATaGATACCATATTGCTTCTTCAGCTCCCTCAGCTGTTGCTTGAAC | + |
|
Preference number: 5 (lower is better) Translates to: ISSSTPSVRSFSLSA*IPYCFFSSLSCCLN Trigger: GTTCAAGCAACAGCTGAGGGAGCTGAAGAAGCAATATGGTATTCATGCAGACAGAGAGAATGATCTGACAGAAGGAGTTGACGAAGATAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079703.11 |
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| CDS CCA 90 bp | TTCATTTCCAGCTGTGTTATGGGGCAGATGAAATTGGTTTGGCTCTaGGTCACAATCATATCTTCGTCAACTCCTTCTGTCAGATCATTC | + |
|
Preference number: 5 (lower is better) Translates to: FISSCVMGQMKLVWL*VTIISSSTPSVRSF Trigger: GAATGATCTGACAGAAGGAGTTGACGAAGATATGATTGTGACCCAGAGCCAAACCAATTTCATCTGCCCCATAACACAGCTGGAAATGAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
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| CDS GCA 90 bp | AATCATATCTTCGTCAACTCCTTCTGTCAGATCATTCTCTCTGTCTaGATGAATACCATATTGCTTCTTCAGCTCCCTCAGCTGTTGCTT | + |
|
Preference number: 5 (lower is better) Translates to: NHIFVNSFCQIILSV*MNTILLLQLPQLLL Trigger: AAGCAACAGCTGAGGGAGCTGAAGAAGCAATATGGTATTCATGCAGACAGAGAGAATGATCTGACAGAAGGAGTTGACGAAGATATGATT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079703.11 |
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| CDS GCA 90 bp | GGTTTCACTAATTGCTTCTTCAGCTCCCTCAGCTGTTGCTTGAACTaGACGAACTTTTCATTCTCTTTAAAGTCGGCATCAGAGTTCTTA | + |
|
Preference number: 5 (lower is better) Translates to: GFTNCFFSSLSCCLN*TNFSFSLKSASEFL Trigger: TAAGAACTCTGATGCCGACTTTAAAGAGAATGAAAAGTTCGTGCAGTTCAAGCAACAGCTGAGGGAGCTGAAGAAGCAATTAGTGAAACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227173.2 |
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| CDS GCA 90 bp | TCTTCTTTGGGTTTCACTAATTGCTTCTTCAGCTCCCTCAGCTGTTaGTTGAACTGCACGAACTTTTCATTCTCTTTAAAGTCGGCATCA | + |
|
Preference number: 5 (lower is better) Translates to: SSLGFTNCFFSSLSC*LNCTNFSFSLKSAS Trigger: TGATGCCGACTTTAAAGAGAATGAAAAGTTCGTGCAGTTCAAGCAACAGCTGAGGGAGCTGAAGAAGCAATTAGTGAAACCCAAAGAAGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227173.2 |
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| CDS TCA 90 bp | ATATCTTCGTCAACTCCTTCTGTCAGATCATTCTCTCTGTCTGCATaGATACCATCTCGTTTATTGCCTGCTCTACTGGAATCCTTATTC | + |
|
Preference number: 5 (lower is better) Translates to: ISSSTPSVRSFSLSA*IPSRLLPALLESLF Trigger: GAATAAGGATTCCAGTAGAGCAGGCAATAAACGAGATGGTATTCATGCAGACAGAGAGAATGATCTGACAGAAGGAGTTGACGAAGATAT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227173.2 |
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| CDS CCA 90 bp | TGCTTGGATTCAATCATGCGAACAATGGCTTCCTCTTCGTATGTATaGCCACACATTTTATTTTTCACTGGCTTCTTCATTTCCAGCTGT | + |
|
Preference number: 5 (lower is better) Translates to: CLDSIMRTMASSSYV*PHILFFTGFFISSC Trigger: ACAGCTGGAAATGAAGAAGCCAGTGAAAAATAAAATGTGTGGCCATACATACGAAGAGGAAGCCATTGTTCGCATGATTGAATCCAAGCA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
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| CDS CCA 90 bp | AGGCCTTCTTCTTCCTCTTATGCTTGGATTCAATCATGCGAACAATaGCTTCCTCTTCGTATGTATGGCCACACATTTTATTTTTCACTG | + |
|
Preference number: 5 (lower is better) Translates to: RPSSSSYAWIQSCEQ*LPLRMYGHTFYFSL Trigger: CAGTGAAAAATAAAATGTGTGGCCATACATACGAAGAGGAAGCCATTGTTCGCATGATTGAATCCAAGCATAAGAGGAAGAAGAAGGCCT 41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
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| CDS TCA 72 bp | GGCTCTCGATTGCCCTTCTCAGGGCTTCATCCGGAATaGGATCTGACATTCTCATGTCTGTGTGGCTACAGC | + |
|
Preference number: 6 (lower is better) Translates to: GSRLPFSGLHPE*DLTFSCLCGYS Trigger: GCTGTAGCCACACAGACATGAGAATGTCAGATCTCATTCCGGATGAAGCCCTGAGAAGGGCAATCGAGAGCC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
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| CDS CCA 72 bp | CTGACATTCTCATGTCTGTGTGGCTACAGCCAATTTTaGGGCAACAGGCCTTCTTCTTCCTCTTATGCTTGG | + |
|
Preference number: 6 (lower is better) Translates to: LTFSCLCGYSQF*GNRPSSSSYAW Trigger: CCAAGCATAAGAGGAAGAAGAAGGCCTGTTGCCCCAAAATTGGCTGTAGCCACACAGACATGAGAATGTCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
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| CDS TCA 72 bp | GATTGCCCTTCTCAGGGCTTCATCCGGAATGAGATCTaGCATTCTCATGTCTGTGTGGCTACAGCCAATTTT | + |
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Preference number: 6 (lower is better) Translates to: DCPSQGFIRNEI*HSHVCVATANF Trigger: AAAATTGGCTGTAGCCACACAGACATGAGAATGTCAGATCTCATTCCGGATGAAGCCCTGAGAAGGGCAATC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
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| CDS CAA 72 bp | TCTGACATTCTCATGTCTGTGTGGCTACAGCCAATTTaGGGGCAACAGGCCTTCTTCTTCCTCTTATGCTTG | + |
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Preference number: 6 (lower is better) Translates to: SDILMSVWLQPI*GQQAFFFLLCL Trigger: CAAGCATAAGAGGAAGAAGAAGGCCTGTTGCCCCAAAATTGGCTGTAGCCACACAGACATGAGAATGTCAGA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
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| CDS CAA 90 bp | TGGCTTCTTCATTTCCAGCTGTGTTATGGGGCAGATGAAATTGGTTaGGCTCTGGGTCACAATCATATCTTCGTCAACTCCTTCTGTCAG | + |
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Preference number: 6 (lower is better) Translates to: WLLHFQLCYGADEIG*ALGHNHIFVNSFCQ Trigger: CTGACAGAAGGAGTTGACGAAGATATGATTGTGACCCAGAGCCAAACCAATTTCATCTGCCCCATAACACAGCTGGAAATGAAGAAGCCA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
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| CDS CAA 90 bp | CTACAGCCAATTTTGGGGCAACAGGCCTTCTTCTTCCTCTTATGCTaGGATTCAATCATGCGAACAATGGCTTCCTCTTCGTATGTATGG | + |
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Preference number: 6 (lower is better) Translates to: LQPILGQQAFFFLLC*DSIMRTMASSSYVW Trigger: CCATACATACGAAGAGGAAGCCATTGTTCGCATGATTGAATCCAAGCATAAGAGGAAGAAGAAGGCCTGTTGCCCCAAAATTGGCTGTAG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
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| CDS CAA 90 bp | GGAATGAGATCTGACATTCTCATGTCTGTGTGGCTACAGCCAATTTaGGGGCAACAGGCCTTCTTCTTCCTCTTATGCTTGGATTCAATC | + |
|
Preference number: 6 (lower is better) Translates to: GMRSDILMSVWLQPI*GQQAFFFLLCLDSI Trigger: GATTGAATCCAAGCATAAGAGGAAGAAGAAGGCCTGTTGCCCCAAAATTGGCTGTAGCCACACAGACATGAGAATGTCAGATCTCATTCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
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| CDS CAA 90 bp | CTGGAATCCTTATTCGGGTCGAATTCACTGTGTCTTCCATCTTCTTaGGGTTTCACTAATTGCTTCTTCAGCTCCCTCAGCTGTTGCTTG | + |
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Preference number: 6 (lower is better) Translates to: LESLFGSNSLCLPSS*GFTNCFFSSLSCCL Trigger: CAAGCAACAGCTGAGGGAGCTGAAGAAGCAATTAGTGAAACCCAAAGAAGATGGAAGACACAGTGAATTCGACCCGAATAAGGATTCCAG 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227173.2 |
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| CDS GCA 72 bp | AGGCCTTCTTCTTCCTCTTATGCTTGGATTCAATCATaGGAACAATGGCTTCCTCTTCGTATGTATGGCCAC | + |
|
Preference number: 6 (lower is better) Translates to: RPSSSSYAWIQS*EQWLPLRMYGH Trigger: GTGGCCATACATACGAAGAGGAAGCCATTGTTCGCATGATTGAATCCAAGCATAAGAGGAAGAAGAAGGCCT 46% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
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| CDS GCA 72 bp | TCACTGTGTCTTCCATCTTCTTTGGGTTTCACTAATTaGTTCTTCAGCTCCCTCAGCTGTTGCTTGAACTGC | + |
|
Preference number: 6 (lower is better) Translates to: SLCLPSSLGFTN*FFSSLSCCLNC Trigger: GCAGTTCAAGCAACAGCTGAGGGAGCTGAAGAAGCAATTAGTGAAACCCAAAGAAGATGGAAGACACAGTGA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227173.2 |
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| CDS CCA 72 bp | AGCTGTGTTATGGGGCAGATGAAATTGGTTTGGCTCTaGGTCACAATCATATCTTCGTCAACTCCTTCTGTC | + |
|
Preference number: 6 (lower is better) Translates to: SCVMGQMKLVWL*VTIISSSTPSV Trigger: GACAGAAGGAGTTGACGAAGATATGATTGTGACCCAGAGCCAAACCAATTTCATCTGCCCCATAACACAGCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
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| CDS CCA 72 bp | TTTTGGGGCAACAGGCCTTCTTCTTCCTCTTATGCTTaGATTCAATCATGCGAACAATGGCTTCCTCTTCGT | + |
|
Preference number: 6 (lower is better) Translates to: FWGNRPSSSSYA*IQSCEQWLPLR Trigger: ACGAAGAGGAAGCCATTGTTCGCATGATTGAATCCAAGCATAAGAGGAAGAAGAAGGCCTGTTGCCCCAAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
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| CDS CAA 72 bp | CATTTCCAGCTGTGTTATGGGGCAGATGAAATTGGTTaGGCTCTGGGTCACAATCATATCTTCGTCAACTCC | + |
|
Preference number: 6 (lower is better) Translates to: HFQLCYGADEIG*ALGHNHIFVNS Trigger: GGAGTTGACGAAGATATGATTGTGACCCAGAGCCAAACCAATTTCATCTGCCCCATAACACAGCTGGAAATG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
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| CDS TCA 72 bp | TCAACTCCTTCTGTCAGATCATTCTCTCTGTCTGCATaGATACCATATTGCTTCTTCAGCTCCCTCAGCTGT | + |
|
Preference number: 6 (lower is better) Translates to: STPSVRSFSLSA*IPYCFFSSLSC Trigger: ACAGCTGAGGGAGCTGAAGAAGCAATATGGTATTCATGCAGACAGAGAGAATGATCTGACAGAAGGAGTTGA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079703.11 |
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| CDS CCA 72 bp | ATTTCCAGCTGTGTTATGGGGCAGATGAAATTGGTTTaGCTCTGGGTCACAATCATATCTTCGTCAACTCCT | + |
|
Preference number: 6 (lower is better) Translates to: ISSCVMGQMKLV*LWVTIISSSTP Trigger: AGGAGTTGACGAAGATATGATTGTGACCCAGAGCCAAACCAATTTCATCTGCCCCATAACACAGCTGGAAAT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
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| CDS CAA 72 bp | TTATTCGGGTCGAATTCACTGTGTCTTCCATCTTCTTaGGGTTTCACTAATTGCTTCTTCAGCTCCCTCAGC | + |
|
Preference number: 6 (lower is better) Translates to: LFGSNSLCLPSS*GFTNCFFSSLS Trigger: GCTGAGGGAGCTGAAGAAGCAATTAGTGAAACCCAAAGAAGATGGAAGACACAGTGAATTCGACCCGAATAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227173.2 |
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| CDS CAA 90 bp | TCTTTGGGTTTCACTAATTGCTTCTTCAGCTCCCTCAGCTGTTGCTaGAACTGCACGAACTTTTCATTCTCTTTAAAGTCGGCATCAGAG | + |
|
Preference number: 6 (lower is better) Translates to: SLGFTNCFFSSLSCC*NCTNFSFSLKSASE Trigger: CTCTGATGCCGACTTTAAAGAGAATGAAAAGTTCGTGCAGTTCAAGCAACAGCTGAGGGAGCTGAAGAAGCAATTAGTGAAACCCAAAGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227173.2 |
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| CDS GCA 72 bp | CATTCTCTCTGTCTGCATGAATACCATCTCGTTTATTaGCTGCTCTACTGGAATCCTTATTCGGGTCGAATT | + |
|
Preference number: 6 (lower is better) Translates to: HSLCLHEYHLVY*LLYWNPYSGRI Trigger: AATTCGACCCGAATAAGGATTCCAGTAGAGCAGGCAATAAACGAGATGGTATTCATGCAGACAGAGAGAATG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000227173.2 |
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| CDS GCA 72 bp | GGTTTCACTAATTGCTTCTTCAGCTCCCTCAGCTGTTaGTTGAACTGCACGAACTTTTCATTCTCTTTAAAG | + |
|
Preference number: 6 (lower is better) Translates to: GFTNCFFSSLSC*LNCTNFSFSLK Trigger: CTTTAAAGAGAATGAAAAGTTCGTGCAGTTCAAGCAACAGCTGAGGGAGCTGAAGAAGCAATTAGTGAAACC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000227173.2 |
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| CDS CCA 72 bp | TCTTCCTCTTATGCTTGGATTCAATCATGCGAACAATaGCTTCCTCTTCGTATGTATGGCCACACATTTTAT | + |
|
Preference number: 6 (lower is better) Translates to: SSSYAWIQSCEQ*LPLRMYGHTFY Trigger: ATAAAATGTGTGGCCATACATACGAAGAGGAAGCCATTGTTCGCATGATTGAATCCAAGCATAAGAGGAAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
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| CDS CCA 72 bp | TCAATCATGCGAACAATGGCTTCCTCTTCGTATGTATaGCCACACATTTTATTTTTCACTGGCTTCTTCATT | + |
|
Preference number: 6 (lower is better) Translates to: SIMRTMASSSYV*PHILFFTGFFI Trigger: AATGAAGAAGCCAGTGAAAAATAAAATGTGTGGCCATACATACGAAGAGGAAGCCATTGTTCGCATGATTGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000079703.11 ENSMUST00000227173.2 |
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| CDS CAA 72 bp | ATGAATACCATATTGCTTCTTCAGCTCCCTCAGCTGTaGCTTGAACTGCACGAACTTTTCATTCTCTTTAAA | + |
|
Preference number: 6 (lower is better) Translates to: MNTILLLQLPQL*LELHELFILFK Trigger: TTTAAAGAGAATGAAAAGTTCGTGCAGTTCAAGCAACAGCTGAGGGAGCTGAAGAAGCAATATGGTATTCAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079703.11 |
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