Pregenerated sensors for NSFL1C (Mus musculus)
Ensembl gene IDs: ENSMUSG00000027455Ensembl transcript IDs: ENSMUST00000028949.16, ENSMUST00000089140.13, ENSMUST00000103160.5
Found 22 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR-3UTR CCA 90 bp | AATGTCCAACTGAAGTCTAAGAATCCAGAGCTACGGACGAGACGTGGCACTGGAGCATGGCCACAGTCATaGGAGACACTTAGGGAGGTG | + |
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Preference number: 2 (lower is better) Translates to: NVQLKSKNPELRTRRGTGAWPQS*ETLREV Trigger: CACCTCCCTAAGTGTCTCCCATGACTGTGGCCATGC...TCCAGTGCCACGTCTCGTCCGTAGCTCTGGATTCTTAGACTTCAGTTGGACATT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028949.16 ENSMUST00000089140.13 ENSMUST00000103160.5 |
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| 3UTR-3UTR CCA 90 bp | AATGTCCAACTGAAGTCTAAGAATCCAGAGCTACGGACGAGACGTGGCACTGGAAAATCCCCACGGGCATaGCCACAGTCATGGGAGACA | + |
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Preference number: 2 (lower is better) Translates to: NVQLKSKNPELRTRRGTGKSPRA*PQSWET Trigger: TGTCTCCCATGACTGTGGCCATGCCCGTGGGGATTT...TCCAGTGCCACGTCTCGTCCGTAGCTCTGGATTCTTAGACTTCAGTTGGACATT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000028949.16 ENSMUST00000089140.13 ENSMUST00000103160.5 |
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| 3UTR CCA 72 bp | GGTGGGAGGAAATCCCCACGGGCATGGCCACAGTCATaGGAGACACTTAGGGAGGTGAGGCAACAGCTGGGC | + |
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Preference number: 3 (lower is better) Translates to: GGRKSPRAWPQS*ETLREVRQQLG Trigger: GCCCAGCTGTTGCCTCACCTCCCTAAGTGTCTCCCATGACTGTGGCCATGCCCGTGGGGATTTCCTCCCACC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028949.16 ENSMUST00000089140.13 ENSMUST00000103160.5 |
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| 3UTR CCA 72 bp | AGGTGTGTACGGGGTGGGAGGAAATCCCCACGGGCATaGCCACAGTCATGGGAGACACTTAGGGAGGTGAGG | + |
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Preference number: 3 (lower is better) Translates to: RCVRGGRKSPRA*PQSWETLREVR Trigger: CCTCACCTCCCTAAGTGTCTCCCATGACTGTGGCCATGCCCGTGGGGATTTCCTCCCACCCCGTACACACCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000028949.16 ENSMUST00000089140.13 ENSMUST00000103160.5 |
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| CDS-3UTR GCA 90 bp | AATGTCCAACTGAAGTCTAAGAATCCAGAGCTACGGACGAGACGTGGCACTGGACCCTGTCCTCCTCAGTaGCAGTCACCGCCACGAACT | + |
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Preference number: 4 (lower is better) Translates to: NVQLKSKNPELRTRRGTGPCPPQ*QSPPRT Trigger: AGTTCGTGGCGGTGACTGGCACTGAGGAGGACAGGG...TCCAGTGCCACGTCTCGTCCGTAGCTCTGGATTCTTAGACTTCAGTTGGACATT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028949.16 ENSMUST00000089140.13 ENSMUST00000103160.5 |
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| CDS-3UTR GCA 90 bp | AATGTCCAACTGAAGTCTAAGAATCCAGAGCTACGGACGAGACGTGGCACTGGACTTGCAAGTGCAATCTaGAGGTCCCAGCCAGCCGAC | + |
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Preference number: 4 (lower is better) Translates to: NVQLKSKNPELRTRRGTGLASAI*RSQPAD Trigger: GTCGGCTGGCTGGGACCTGCAGATTGCACTTGCAAG...TCCAGTGCCACGTCTCGTCCGTAGCTCTGGATTCTTAGACTTCAGTTGGACATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028949.16 ENSMUST00000089140.13 ENSMUST00000103160.5 |
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| CDS-3UTR GCA 90 bp | AATGTCCAACTGAAGTCTAAGAATCCAGAGCTACGGACGAGACGTGGCACTGGAACATCCTGGCCTGAATaGCGCCTCCTTTCTCCTGCC | + |
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Preference number: 4 (lower is better) Translates to: NVQLKSKNPELRTRRGTGTSWPE*RLLSPA Trigger: GGCAGGAGAAAGGAGGCGGCATTCAGGCCAGGATGT...TCCAGTGCCACGTCTCGTCCGTAGCTCTGGATTCTTAGACTTCAGTTGGACATT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028949.16 ENSMUST00000089140.13 |
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| CDS-3UTR TCA 90 bp | AATGTCCAACTGAAGTCTAAGAATCCAGAGCTACGGACGAGACGTGGCACTGGAATGAACATCCTGGCCTaGATGCCGCCTCCTTTCTCC | + |
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Preference number: 4 (lower is better) Translates to: NVQLKSKNPELRTRRGTGMNILA*MPPPFS Trigger: GGAGAAAGGAGGCGGCATTCAGGCCAGGATGTTCAT...TCCAGTGCCACGTCTCGTCCGTAGCTCTGGATTCTTAGACTTCAGTTGGACATT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028949.16 ENSMUST00000089140.13 |
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| CDS-3UTR GCA 90 bp | AATGTCCAACTGAAGTCTAAGAATCCAGAGCTACGGACGAGACGTGGCACTGGATTCACCTGCCCACCATaGGCTAACCTCCGAAGCTCT | + |
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Preference number: 4 (lower is better) Translates to: NVQLKSKNPELRTRRGTGFTCPP*ANLRSS Trigger: AGAGCTTCGGAGGTTAGCGCATGGTGGGCAGGTGAA...TCCAGTGCCACGTCTCGTCCGTAGCTCTGGATTCTTAGACTTCAGTTGGACATT 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028949.16 ENSMUST00000089140.13 ENSMUST00000103160.5 |
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| CDS-3UTR GCA 90 bp | AATGTCCAACTGAAGTCTAAGAATCCAGAGCTACGGACGAGACGTGGCACTGGAATATCCAGGTTCACCTaGCCACCATGCGCTAACCTC | + |
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Preference number: 4 (lower is better) Translates to: NVQLKSKNPELRTRRGTGISRFT*PPCANL Trigger: GAGGTTAGCGCATGGTGGGCAGGTGAACCTGGATAT...TCCAGTGCCACGTCTCGTCCGTAGCTCTGGATTCTTAGACTTCAGTTGGACATT 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028949.16 ENSMUST00000089140.13 ENSMUST00000103160.5 |
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| CDS-3UTR GCA 90 bp | AATGTCCAACTGAAGTCTAAGAATCCAGAGCTACGGACGAGACGTGGCACTGGACCCCAGCATAAAACCTaGTCCTCTGTCCCTCCTCTT | + |
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Preference number: 4 (lower is better) Translates to: NVQLKSKNPELRTRRGTGPQHKT*SSVPPL Trigger: AAGAGGAGGGACAGAGGAGCAGGTTTTATGCTGGGG...TCCAGTGCCACGTCTCGTCCGTAGCTCTGGATTCTTAGACTTCAGTTGGACATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000089140.13 |
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| CDS-3UTR CCA 90 bp | AATGTCCAACTGAAGTCTAAGAATCCAGAGCTACGGACGAGACGTGGCACTGGATCTCTCCAGGGCTCTTaGTCACTCGTTCCACAGCTA | + |
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Preference number: 4 (lower is better) Translates to: NVQLKSKNPELRTRRGTGSLQGS*SLVPQL Trigger: TAGCTGTGGAACGAGTGACCAAGAGCCCTGGAGAGA...TCCAGTGCCACGTCTCGTCCGTAGCTCTGGATTCTTAGACTTCAGTTGGACATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028949.16 ENSMUST00000089140.13 ENSMUST00000103160.5 |
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| CDS-3UTR TCA 90 bp | AATGTCCAACTGAAGTCTAAGAATCCAGAGCTACGGACGAGACGTGGCACTGGAAGCTTTAGCACTACATaGACATCCTGGCCTGAATGC | + |
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Preference number: 4 (lower is better) Translates to: NVQLKSKNPELRTRRGTGSFSTT*TSWPEC Trigger: GCATTCAGGCCAGGATGTTCATGTAGTGCTAAAGCT...TCCAGTGCCACGTCTCGTCCGTAGCTCTGGATTCTTAGACTTCAGTTGGACATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000028949.16 ENSMUST00000089140.13 |
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| CDS-3UTR CCA 90 bp | AATGTCCAACTGAAGTCTAAGAATCCAGAGCTACGGACGAGACGTGGCACTGGAATGTCGCTGATCCTGTaGCTGTGGTTGAATTTCTGC | + |
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Preference number: 4 (lower is better) Translates to: NVQLKSKNPELRTRRGTGMSLIL*LWLNFC Trigger: GCAGAAATTCAACCACAGCCACAGGATCAGCGACAT...TCCAGTGCCACGTCTCGTCCGTAGCTCTGGATTCTTAGACTTCAGTTGGACATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028949.16 ENSMUST00000089140.13 ENSMUST00000103160.5 |
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| CDS-3UTR TCA 90 bp | AATGTCCAACTGAAGTCTAAGAATCCAGAGCTACGGACGAGACGTGGCACTGGAACTTGGGGTTGCTTGTaGAATGGTCACAATGTCTTC | + |
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Preference number: 4 (lower is better) Translates to: NVQLKSKNPELRTRRGTGTWGCL*NGHNVF Trigger: GAAGACATTGTGACCATTTCACAAGCAACCCCAAGT...TCCAGTGCCACGTCTCGTCCGTAGCTCTGGATTCTTAGACTTCAGTTGGACATT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000028949.16 ENSMUST00000089140.13 ENSMUST00000103160.5 |
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| CDS-3UTR CCA 90 bp | AATGTCCAACTGAAGTCTAAGAATCCAGAGCTACGGACGAGACGTGGCACTGGAGGGTTGCTTGTGAAATaGTCACAATGTCTTCATCCC | + |
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Preference number: 4 (lower is better) Translates to: NVQLKSKNPELRTRRGTGGLLVK*SQCLHP Trigger: GGGATGAAGACATTGTGACCATTTCACAAGCAACCC...TCCAGTGCCACGTCTCGTCCGTAGCTCTGGATTCTTAGACTTCAGTTGGACATT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028949.16 ENSMUST00000089140.13 ENSMUST00000103160.5 |
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| CDS GCA 90 bp | CCCAGCCAGCCGACTCCAGGAAGAAACGGGCCCTGTCCTCCTCAGTaGCAGTCACCGCCACGAACTCCCTCAACGCGTCCTGCCGCTCCT | + |
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Preference number: 5 (lower is better) Translates to: PSQPTPGRNGPCPPQ*QSPPRTPSTRPAAP Trigger: AGGAGCGGCAGGACGCGTTGAGGGAGTTCGTGGCGGTGACTGGCACTGAGGAGGACAGGGCCCGTTTCTTCCTGGAGTCGGCTGGCTGGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028949.16 ENSMUST00000089140.13 ENSMUST00000103160.5 |
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| CDS-3UTR CAA 90 bp | AATGTCCAACTGAAGTCTAAGAATCCAGAGCTACGGACGAGACGTGGCACTGGAGGCATTGGATGGGTCTaGGTAGCTTCTAAGGTCACC | + |
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Preference number: 5 (lower is better) Translates to: NVQLKSKNPELRTRRGTGGIGWV*VASKVT Trigger: GGTGACCTTAGAAGCTACCAAGACCCATCCAATGCC...TCCAGTGCCACGTCTCGTCCGTAGCTCTGGATTCTTAGACTTCAGTTGGACATT 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028949.16 ENSMUST00000089140.13 ENSMUST00000103160.5 |
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| CDS-3UTR CAA 90 bp | AATGTCCAACTGAAGTCTAAGAATCCAGAGCTACGGACGAGACGTGGCACTGGACTCCTCCTCTTCATCTaGGTCATGAATGAGGTCTCT | + |
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Preference number: 5 (lower is better) Translates to: NVQLKSKNPELRTRRGTGLLLFI*VMNEVS Trigger: AGAGACCTCATTCATGACCAAGATGAAGAGGAGGAG...TCCAGTGCCACGTCTCGTCCGTAGCTCTGGATTCTTAGACTTCAGTTGGACATT 49% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028949.16 ENSMUST00000089140.13 ENSMUST00000103160.5 |
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| CDS-3UTR CAA 90 bp | AATGTCCAACTGAAGTCTAAGAATCCAGAGCTACGGACGAGACGTGGCACTGGACTTCTAAGGTCACCATaGTCTAGGCTGAATCCAGTT | + |
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Preference number: 5 (lower is better) Translates to: NVQLKSKNPELRTRRGTGLLRSP*SRLNPV Trigger: AACTGGATTCAGCCTAGACAATGGTGACCTTAGAAG...TCCAGTGCCACGTCTCGTCCGTAGCTCTGGATTCTTAGACTTCAGTTGGACATT 48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028949.16 ENSMUST00000089140.13 ENSMUST00000103160.5 |
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| CDS-3UTR CAA 90 bp | AATGTCCAACTGAAGTCTAAGAATCCAGAGCTACGGACGAGACGTGGCACTGGAGTAGGTTCTGCTTCATaGATTAAGATGGACGAGCTA | + |
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Preference number: 5 (lower is better) Translates to: NVQLKSKNPELRTRRGTGVGSAS*IKMDEL Trigger: TAGCTCGTCCATCTTAATCAATGAAGCAGAACCTAC...TCCAGTGCCACGTCTCGTCCGTAGCTCTGGATTCTTAGACTTCAGTTGGACATT 47% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028949.16 ENSMUST00000089140.13 ENSMUST00000103160.5 |
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| CDS GCA 72 bp | CCGACTCCAGGAAGAAACGGGCCCTGTCCTCCTCAGTaGCAGTCACCGCCACGAACTCCCTCAACGCGTCCT | + |
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Preference number: 6 (lower is better) Translates to: PTPGRNGPCPPQ*QSPPRTPSTRP Trigger: AGGACGCGTTGAGGGAGTTCGTGGCGGTGACTGGCACTGAGGAGGACAGGGCCCGTTTCTTCCTGGAGTCGG 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000028949.16 ENSMUST00000089140.13 ENSMUST00000103160.5 |
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