Pregenerated sensors for NSDHL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000031349Ensembl transcript IDs: ENSMUST00000033715.5
Found 89 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | ATGCTATCCTGGGAGAAATGTCTCCTGTTGTCACCTCCAATGTCATaGAGGGTGTCAGGTATGCTACCATCTAACCAGCAAGGGACACAC | + |
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Preference number: 1 (lower is better) Translates to: MLSWEKCLLLSPPMS*RVSGMLPSNQQGTH Trigger: GTGTGTCCCTTGCTGGTTAGATGGTAGCATACCTGACACCCTCCATGACATTGGAGGTGACAACAGGAGACATTTCTCCCAGGATAGCAT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| 3UTR TCA 90 bp | TTTGGCTTATTGCCAAGCAGCCATCATCTCCTGTTTATTAGGAGCTaGCCAGCTAACACAGCACACACTGTACCATTGCATTGCACCATC | + |
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Preference number: 1 (lower is better) Translates to: FGLLPSSHHLLFIRS*PANTAHTVPLHCTI Trigger: GATGGTGCAATGCAATGGTACAGTGTGTGCTGTGTTAGCTGGTCAGCTCCTAATAAACAGGAGATGATGGCTGCTTGGCAATAAGCCAAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| 3UTR GCA 90 bp | ATAATGTTCTGTGAAATGAGCTGCAAAGATGTCTGTAACCCATTCTaGCCCATCTCACGGAGGAGTTTCTACTCAAACATCATGTCGATG | + |
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Preference number: 1 (lower is better) Translates to: IMFCEMSCKDVCNPF*PISRRSFYSNIMSM Trigger: CATCGACATGATGTTTGAGTAGAAACTCCTCCGTGAGATGGGGCAGAATGGGTTACAGACATCTTTGCAGCTCATTTCACAGAACATTAT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| 3UTR-3UTR CCA 90 bp | AGGGGCAAGGAACCAGCAGTGGATTTATCCTTAAGGATTGGGGATTACATTCATAGAGGAGAAAGTTACTaGGGAGGGCACTGGGGAACT | + |
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Preference number: 2 (lower is better) Translates to: RGKEPAVDLSLRIGDYIHRGESY*GGHWGT Trigger: AGTTCCCCAGTGCCCTCCCCAGTAACTTTCTCCTCT...ATGAATGTAATCCCCAATCCTTAAGGATAAATCCACTGCTGGTTCCTTGCCCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| 3UTR-3UTR CCA 90 bp | GGGCAAGGAACCAGCAGTGGATTTATCCTTAAGGATTGGGGATTACATTCATCAAGTTCAATGCTATCCTaGGAGAAATGTCTCCTGTTG | + |
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Preference number: 2 (lower is better) Translates to: GQGTSSGFILKDWGLHSSSSMLS*EKCLLL Trigger: CAACAGGAGACATTTCTCCCAGGATAGCATTGAACT...TGATGAATGTAATCCCCAATCCTTAAGGATAAATCCACTGCTGGTTCCTTGCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| 3UTR-3UTR CCA 90 bp | AGTGGCCTAATAATGTTCTGTGAAATGAGCTGCAAAGATGTCTGTAACCCATTCGGAGACCACTCTTTTTaGCTTATTGCCAAGCAGCCA | + |
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Preference number: 2 (lower is better) Translates to: SGLIMFCEMSCKDVCNPFGDHSF*LIAKQP Trigger: TGGCTGCTTGGCAATAAGCCAAAAAGAGTGGTCTCC...GAATGGGTTACAGACATCTTTGCAGCTCATTTCACAGAACATTATTAGGCCACT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| 3UTR-3UTR TCA 90 bp | GAAATGATTTATGGAAAAACAATAGAGGCAGACACTGCAACCATCTTTGAAAGACCAAGCAGTAGATTATaGCTCTGCCTGAGAAGTTCA | + |
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Preference number: 2 (lower is better) Translates to: EMIYGKTIEADTATIFERPSSRL*LCLRSS Trigger: TGAACTTCTCAGGCAGAGTCATAATCTACTGCTTGG...TCTTTCAAAGATGGTTGCAGTGTCTGCCTCTATTGTTTTTCCATAAATCATTTC 39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| 3UTR-3UTR CAA 90 bp | GAAATGAGCTGCAAAGATGTCTGTAACCCATTCTGCCCCATCTCACGGAGGAGTGAGAAATGTCTCCTGTaGTCACCTCCAATGTCATGG | + |
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Preference number: 3 (lower is better) Translates to: EMSCKDVCNPFCPISRRSEKCLL*SPPMSW Trigger: CCATGACATTGGAGGTGACAACAGGAGACATTTCTC...ACTCCTCCGTGAGATGGGGCAGAATGGGTTACAGACATCTTTGCAGCTCATTTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| 3UTR TCA 72 bp | GTGTGGGGGAGAGAAAAAGACCCAAGCAGTAGATTATaGCTCTGCCTGAGAAGTTCAATGCTATCCTGGGAG | + |
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Preference number: 3 (lower is better) Translates to: VWGREKDPSSRL*LCLRSSMLSWE Trigger: CTCCCAGGATAGCATTGAACTTCTCAGGCAGAGTCATAATCTACTGCTTGGGTCTTTTTCTCTCCCCCACAC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| 3UTR TCA 72 bp | TTGCCAAGCAGCCATCATCTCCTGTTTATTAGGAGCTaGCCAGCTAACACAGCACACACTGTACCATTGCAT | + |
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Preference number: 3 (lower is better) Translates to: LPSSHHLLFIRS*PANTAHTVPLH Trigger: ATGCAATGGTACAGTGTGTGCTGTGTTAGCTGGTCAGCTCCTAATAAACAGGAGATGATGGCTGCTTGGCAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| 3UTR GCA 72 bp | TGTGAAATGAGCTGCAAAGATGTCTGTAACCCATTCTaGCCCATCTCACGGAGGAGTTTCTACTCAAACATC | + |
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Preference number: 3 (lower is better) Translates to: CEMSCKDVCNPF*PISRRSFYSNI Trigger: GATGTTTGAGTAGAAACTCCTCCGTGAGATGGGGCAGAATGGGTTACAGACATCTTTGCAGCTCATTTCACA 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| 3UTR-3UTR CAA 90 bp | AGTGGCCTAATAATGTTCTGTGAAATGAGCTGCAAAGATGTCTGTAACCCATTCAGGAGACCACTCTTTTaGGCTTATTGCCAAGCAGCC | + |
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Preference number: 3 (lower is better) Translates to: SGLIMFCEMSCKDVCNPFRRPLF*AYCQAA Trigger: GGCTGCTTGGCAATAAGCCAAAAAGAGTGGTCTCCT...GAATGGGTTACAGACATCTTTGCAGCTCATTTCACAGAACATTATTAGGCCACT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| 3UTR GCA 72 bp | TTGGAAAGTGGCCTAATAATGTTCTGTGAAATGAGCTaGAAAGATGTCTGTAACCCATTCTGCCCCATCTCA | + |
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Preference number: 3 (lower is better) Translates to: LESGLIMFCEMS*KDVCNPFCPIS Trigger: TGAGATGGGGCAGAATGGGTTACAGACATCTTTGCAGCTCATTTCACAGAACATTATTAGGCCACTTTCCAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| 3UTR CCA 72 bp | CTCAAACATCATGTCGATGAAGGAGACCACTCTTTTTaGCTTATTGCCAAGCAGCCATCATCTCCTGTTTAT | + |
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Preference number: 3 (lower is better) Translates to: LKHHVDEGDHSF*LIAKQPSSPVY Trigger: ATAAACAGGAGATGATGGCTGCTTGGCAATAAGCCAAAAAGAGTGGTCTCCTTCATCGACATGATGTTTGAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| 3UTR-3UTR CAA 90 bp | AGTGGCCTAATAATGTTCTGTGAAATGAGCTGCAAAGATGTCTGTAACCCATTCACTCTTTTTGGCTTATaGCCAAGCAGCCATCATCTC | + |
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Preference number: 3 (lower is better) Translates to: SGLIMFCEMSCKDVCNPFTLFGL*PSSHHL Trigger: GAGATGATGGCTGCTTGGCAATAAGCCAAAAAGAGT...GAATGGGTTACAGACATCTTTGCAGCTCATTTCACAGAACATTATTAGGCCACT 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR CCA 90 bp | GAAATGAGCTGCAAAGATGTCTGTAACCCATTCTGCCCCATCTCACGGAGGAGTTCCTTCCGCAGGTGGTaGAAACTCTGCACAGTCCTT | + |
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Preference number: 4 (lower is better) Translates to: EMSCKDVCNPFCPISRRSSFRRW*KLCTVL Trigger: AAGGACTGTGCAGAGTTTCCACCACCTGCGGAAGGA...ACTCCTCCGTGAGATGGGGCAGAATGGGTTACAGACATCTTTGCAGCTCATTTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR GCA 90 bp | GGCCTAATAATGTTCTGTGAAATGAGCTGCAAAGATGTCTGTAACCCATTCTGCTGCTCCACCATGTGCTaGCCCAGGAACCCAGAGCCT | + |
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Preference number: 4 (lower is better) Translates to: GLIMFCEMSCKDVCNPFCCSTMC*PRNPEP Trigger: AGGCTCTGGGTTCCTGGGGCAGCACATGGTGGAGCA...GCAGAATGGGTTACAGACATCTTTGCAGCTCATTTCACAGAACATTATTAGGCC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR GCA 90 bp | AGGGGCAAGGAACCAGCAGTGGATTTATCCTTAAGGATTGGGGATTACATTCATAACTGCTCCACCATGTaGTGCCCCAGGAACCCAGAG | + |
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Preference number: 4 (lower is better) Translates to: RGKEPAVDLSLRIGDYIHNCSTM*CPRNPE Trigger: CTCTGGGTTCCTGGGGCAGCACATGGTGGAGCAGTT...ATGAATGTAATCCCCAATCCTTAAGGATAAATCCACTGCTGGTTCCTTGCCCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR GCA 90 bp | TCCTGTTTATTAGGAGCTGACCAGCTAACACAGCACACACTGTACCATTGCATTCCCTTGGGCCGAAAATaGCATGAGGACGAATGGCTG | + |
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Preference number: 4 (lower is better) Translates to: SCLLGADQLTQHTLYHCIPLGRK*HEDEWL Trigger: CAGCCATTCGTCCTCATGGCATTTTCGGCCCAAGGG...AATGCAATGGTACAGTGTGTGCTGTGTTAGCTGGTCAGCTCCTAATAAACAGGA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR CCA 90 bp | TATGCGTTCTTTAGAACAGAGAGGAGAAAGTTACTGGGGAGGGCACTGGGGAACTACACCTTTGAGAGCTaGGTACAGGTCCTGTTGGTT | + |
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Preference number: 4 (lower is better) Translates to: YAFFRTERRKLLGRALGNYTFES*VQVLLV Trigger: AACCAACAGGACCTGTACCCAGCTCTCAAAGGTGTA...GTTCCCCAGTGCCCTCCCCAGTAACTTTCTCCTCTCTGTTCTAAAGAACGCATA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR CCA 90 bp | GAGAACAGAAATGGCTGGATTGTTAGTGGCCTGTACTCTTTGGAAAGTGGCCTATTGTCCTTCCGCAGGTaGTGGAAACTCTGCACAGTC | + |
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Preference number: 4 (lower is better) Translates to: ENRNGWIVSGLYSLESGLLSFRR*WKLCTV Trigger: GACTGTGCAGAGTTTCCACCACCTGCGGAAGGACAA...TAGGCCACTTTCCAAAGAGTACAGGCCACTAACAATCCAGCCATTTCTGTTCTC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR TCA 90 bp | AGGGGCAAGGAACCAGCAGTGGATTTATCCTTAAGGATTGGGGATTACATTCATCTGTGCTTACACCTTTaGGAGCTGGGTACAGGTCCT | + |
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Preference number: 4 (lower is better) Translates to: RGKEPAVDLSLRIGDYIHLCLHL*ELGTGP Trigger: AGGACCTGTACCCAGCTCTCAAAGGTGTAAGCACAG...ATGAATGTAATCCCCAATCCTTAAGGATAAATCCACTGCTGGTTCCTTGCCCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR GCA 90 bp | TCCTGTTTATTAGGAGCTGACCAGCTAACACAGCACACACTGTACCATTGCATTGCATCTTGGGAGAGGTaGTCAGCGGCTAAGATGTGT | + |
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Preference number: 4 (lower is better) Translates to: SCLLGADQLTQHTLYHCIASWER*SAAKMC Trigger: ACACATCTTAGCCGCTGAGCACCTCTCCCAAGATGC...AATGCAATGGTACAGTGTGTGCTGTGTTAGCTGGTCAGCTCCTAATAAACAGGA 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR CCA 90 bp | AGTGGCCTAATAATGTTCTGTGAAATGAGCTGCAAAGATGTCTGTAACCCATTCAGGATTGGGACCAACTaGGGGTCCCTTGGGCCGAAA | + |
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Preference number: 4 (lower is better) Translates to: SGLIMFCEMSCKDVCNPFRIGTN*GSLGPK Trigger: TTTCGGCCCAAGGGACCCCCAGTTGGTCCCAATCCT...GAATGGGTTACAGACATCTTTGCAGCTCATTTCACAGAACATTATTAGGCCACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR CCA 90 bp | AGTGGCCTAATAATGTTCTGTGAAATGAGCTGCAAAGATGTCTGTAACCCATTCCCTAGAGCTGCATCTTaGGAGAGGTGCTCAGCGGCT | + |
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Preference number: 4 (lower is better) Translates to: SGLIMFCEMSCKDVCNPFPRAAS*ERCSAA Trigger: AGCCGCTGAGCACCTCTCCCAAGATGCAGCTCTAGG...GAATGGGTTACAGACATCTTTGCAGCTCATTTCACAGAACATTATTAGGCCACT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR TCA 90 bp | GAAATGAGCTGCAAAGATGTCTGTAACCCATTCTGCCCCATCTCACGGAGGAGTCCCCATTTCCAATCATaGACTTCATTTTGCCCTTTC | + |
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Preference number: 4 (lower is better) Translates to: EMSCKDVCNPFCPISRRSPHFQS*TSFCPF Trigger: GAAAGGGCAAAATGAAGTTCATGATTGGAAATGGGG...ACTCCTCCGTGAGATGGGGCAGAATGGGTTACAGACATCTTTGCAGCTCATTTC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR GCA 90 bp | TCCTGTTTATTAGGAGCTGACCAGCTAACACAGCACACACTGTACCATTGCATTAGGTGGTGGAAACTCTaGACAGTCCTTTCCACAGCT | + |
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Preference number: 4 (lower is better) Translates to: SCLLGADQLTQHTLYHCIRWWKL*TVLSTA Trigger: AGCTGTGGAAAGGACTGTGCAGAGTTTCCACCACCT...AATGCAATGGTACAGTGTGTGCTGTGTTAGCTGGTCAGCTCCTAATAAACAGGA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR CCA 90 bp | AGTGGCCTAATAATGTTCTGTGAAATGAGCTGCAAAGATGTCTGTAACCCATTCGGAGGGGACGCGCAGTaGAAAACTGTGCTTACACCT | + |
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Preference number: 4 (lower is better) Translates to: SGLIMFCEMSCKDVCNPFGGDAQ*KTVLTP Trigger: AGGTGTAAGCACAGTTTTCCACTGCGCGTCCCCTCC...GAATGGGTTACAGACATCTTTGCAGCTCATTTCACAGAACATTATTAGGCCACT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR CCA 90 bp | CAAGAATACATTTCAATGAGTTCAGAGAACAGAAATGGCTGGATTGTTAGTGGCCAACTGGGGGTCCCTTaGGCCGAAAATGCCATGAGG | + |
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Preference number: 4 (lower is better) Translates to: QEYISMSSENRNGWIVSGQLGVP*AENAMR Trigger: CCTCATGGCATTTTCGGCCCAAGGGACCCCCAGTTG...GCCACTAACAATCCAGCCATTTCTGTTCTCTGAACTCATTGAAATGTATTCTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| 3UTR CAA 72 bp | AGAAGTTCAATGCTATCCTGGGAGAAATGTCTCCTGTaGTCACCTCCAATGTCATGGAGGGTGTCAGGTATG | + |
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Preference number: 4 (lower is better) Translates to: RSSMLSWEKCLL*SPPMSWRVSGM Trigger: CATACCTGACACCCTCCATGACATTGGAGGTGACAACAGGAGACATTTCTCCCAGGATAGCATTGAACTTCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR TCA 90 bp | GGGCAAGGAACCAGCAGTGGATTTATCCTTAAGGATTGGGGATTACATTCATCAGCTAAGATGTGTCCATaGACCACATTCTCCACGAAG | + |
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Preference number: 4 (lower is better) Translates to: GQGTSSGFILKDWGLHSSAKMCP*TTFSTK Trigger: CTTCGTGGAGAATGTGGTTCATGGACACATCTTAGC...TGATGAATGTAATCCCCAATCCTTAAGGATAAATCCACTGCTGGTTCCTTGCCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR TCA 90 bp | GAGAACAGAAATGGCTGGATTGTTAGTGGCCTGTACTCTTTGGAAAGTGGCCTATCATCGTTGGTGATGTaGAATGCCTTTCCACCTAGA | + |
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Preference number: 4 (lower is better) Translates to: ENRNGWIVSGLYSLESGLSSLVM*NAFPPR Trigger: TCTAGGTGGAAAGGCATTTCACATCACCAACGATGA...TAGGCCACTTTCCAAAGAGTACAGGCCACTAACAATCCAGCCATTTCTGTTCTC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR CCA 90 bp | AGGGGCAAGGAACCAGCAGTGGATTTATCCTTAAGGATTGGGGATTACATTCATCGTCCAGAAAGGGATTaGTTCATCGTTGGTGATGTG | + |
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Preference number: 4 (lower is better) Translates to: RGKEPAVDLSLRIGDYIHRPERD*FIVGDV Trigger: CACATCACCAACGATGAACCAATCCCTTTCTGGACG...ATGAATGTAATCCCCAATCCTTAAGGATAAATCCACTGCTGGTTCCTTGCCCCT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR TCA 90 bp | GGCCTAATAATGTTCTGTGAAATGAGCTGCAAAGATGTCTGTAACCCATTCTGCTCAAATGTGTTCCTGTaGCCTGGCCTCGCTTTGATT | + |
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Preference number: 4 (lower is better) Translates to: GLIMFCEMSCKDVCNPFCSNVFL*PGLALI Trigger: AATCAAAGCGAGGCCAGGTCACAGGAACACATTTGA...GCAGAATGGGTTACAGACATCTTTGCAGCTCATTTCACAGAACATTATTAGGCC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR TCA 90 bp | GAAATGATTTATGGAAAAACAATAGAGGCAGACACTGCAACCATCTTTGAAAGAGGGCCGAAAATGCCATaGGGACGAATGGCTGCGGTT | + |
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Preference number: 4 (lower is better) Translates to: EMIYGKTIEADTATIFERGPKMP*GRMAAV Trigger: AACCGCAGCCATTCGTCCTCATGGCATTTTCGGCCC...TCTTTCAAAGATGGTTGCAGTGTCTGCCTCTATTGTTTTTCCATAAATCATTTC 44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR TCA 90 bp | AGGGGCAAGGAACCAGCAGTGGATTTATCCTTAAGGATTGGGGATTACATTCATTTGGTTCATCGTTGGTaGTGTGAAATGCCTTTCCAC | + |
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Preference number: 4 (lower is better) Translates to: RGKEPAVDLSLRIGDYIHLVHRW*CEMPFH Trigger: GTGGAAAGGCATTTCACATCACCAACGATGAACCAA...ATGAATGTAATCCCCAATCCTTAAGGATAAATCCACTGCTGGTTCCTTGCCCCT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR GCA 90 bp | GAGAACAGAAATGGCTGGATTGTTAGTGGCCTGTACTCTTTGGAAAGTGGCCTAGAATGTTCCAGCCAATaGCACTCGAATTGGTGTAAA | + |
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Preference number: 4 (lower is better) Translates to: ENRNGWIVSGLYSLESGLECSSQ*HSNWCK Trigger: TTTACACCAATTCGAGTGGCATTGGCTGGAACATTC...TAGGCCACTTTCCAAAGAGTACAGGCCACTAACAATCCAGCCATTTCTGTTCTC 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR CCA 90 bp | AGTGGCCTAATAATGTTCTGTGAAATGAGCTGCAAAGATGTCTGTAACCCATTCTGTGTTCCTGTGACCTaGCCTCGCTTTGATTCACCA | + |
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Preference number: 4 (lower is better) Translates to: SGLIMFCEMSCKDVCNPFCVPVT*PRFDSP Trigger: TGGTGAATCAAAGCGAGGCCAGGTCACAGGAACACA...GAATGGGTTACAGACATCTTTGCAGCTCATTTCACAGAACATTATTAGGCCACT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR CCA 90 bp | GAAATGAGCTGCAAAGATGTCTGTAACCCATTCTGCCCCATCTCACGGAGGAGTGGGTTATCAAAGCCTTaGTGGATATCAAATACATTG | + |
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Preference number: 4 (lower is better) Translates to: EMSCKDVCNPFCPISRRSGLSKP*WISNTL Trigger: CAATGTATTTGATATCCACCAAGGCTTTGATAACCC...ACTCCTCCGTGAGATGGGGCAGAATGGGTTACAGACATCTTTGCAGCTCATTTC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| 3UTR CAA 72 bp | ATCATGTCGATGAAGGAGACCACTCTTTTTGGCTTATaGCCAAGCAGCCATCATCTCCTGTTTATTAGGAGC | + |
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Preference number: 4 (lower is better) Translates to: IMSMKETTLFGL*PSSHHLLFIRS Trigger: GCTCCTAATAAACAGGAGATGATGGCTGCTTGGCAATAAGCCAAAAAGAGTGGTCTCCTTCATCGACATGAT 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR TCA 90 bp | AGTGGCCTAATAATGTTCTGTGAAATGAGCTGCAAAGATGTCTGTAACCCATTCGTTAAAATGAGTTTCTaGACTCCGGCCTCTCTGCAG | + |
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Preference number: 4 (lower is better) Translates to: SGLIMFCEMSCKDVCNPFVKMSF*TPASLQ Trigger: CTGCAGAGAGGCCGGAGTTCAGAAACTCATTTTAAC...GAATGGGTTACAGACATCTTTGCAGCTCATTTCACAGAACATTATTAGGCCACT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR CCA 90 bp | GGGCAAGGAACCAGCAGTGGATTTATCCTTAAGGATTGGGGATTACATTCATCAAATTGGTGTAAAGGTTaGCTGGATTTGGATGAGAGG | + |
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Preference number: 4 (lower is better) Translates to: GQGTSSGFILKDWGLHSSNWCKG*LDLDER Trigger: CCTCTCATCCAAATCCAGCCAACCTTTACACCAATT...TGATGAATGTAATCCCCAATCCTTAAGGATAAATCCACTGCTGGTTCCTTGCCC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR CCA 90 bp | TATGCGTTCTTTAGAACAGAGAGGAGAAAGTTACTGGGGAGGGCACTGGGGAACACCCAAAGAGCTTTTTaGCTTTTTCACAACTGTAAT | + |
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Preference number: 4 (lower is better) Translates to: YAFFRTERRKLLGRALGNTQRAF*LFHNCN Trigger: ATTACAGTTGTGAAAAAGCCAAAAAGCTCTTTGGGT...GTTCCCCAGTGCCCTCCCCAGTAACTTTCTCCTCTCTGTTCTAAAGAACGCATA 43% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR TCA 90 bp | CAAGAATACATTTCAATGAGTTCAGAGAACAGAAATGGCTGGATTGTTAGTGGCCACTGCTGGTTAAAATaGGTTTCTGAACTCCGGCCT | + |
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Preference number: 4 (lower is better) Translates to: QEYISMSSENRNGWIVSGHCWLK*VSELRP Trigger: AGGCCGGAGTTCAGAAACTCATTTTAACCAGCAGTG...GCCACTAACAATCCAGCCATTTCTGTTCTCTGAACTCATTGAAATGTATTCTTG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| 3UTR CAA 72 bp | AACAGAAATGGCTGGATTGTTAGTGGCCTGTACTCTTaGGAAAGTGGCCTAATAATGTTCTGTGAAATGAGC | + |
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Preference number: 4 (lower is better) Translates to: NRNGWIVSGLYS*ESGLIMFCEMS Trigger: GCTCATTTCACAGAACATTATTAGGCCACTTTCCAAAGAGTACAGGCCACTAACAATCCAGCCATTTCTGTT 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR TCA 90 bp | AGTGGCCTAATAATGTTCTGTGAAATGAGCTGCAAAGATGTCTGTAACCCATTCGGATATCAAATACATTaGCAGTATAGCCTCGCTCCA | + |
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Preference number: 4 (lower is better) Translates to: SGLIMFCEMSCKDVCNPFGYQIH*QYSLAP Trigger: TGGAGCGAGGCTATACTGTCAATGTATTTGATATCC...GAATGGGTTACAGACATCTTTGCAGCTCATTTCACAGAACATTATTAGGCCACT 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR CCA 90 bp | CAAGAATACATTTCAATGAGTTCAGAGAACAGAAATGGCTGGATTGTTAGTGGCTCTCCTGCAAGATCTTaGTCTCTGTGTAATAGTCAA | + |
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Preference number: 4 (lower is better) Translates to: QEYISMSSENRNGWIVSGSPARS*SLCNSQ Trigger: TTGACTATTACACAGAGACCAAGATCTTGCAGGAGA...GCCACTAACAATCCAGCCATTTCTGTTCTCTGAACTCATTGAAATGTATTCTTG 39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS CCA 90 bp | CGGAGGGGACGCGCAGTGGAAAACTGTGCTTACACCTTTGAGAGCTaGGTACAGGTCCTGTTGGTTGCACAGGTCGCCTATAAAGAACTG | + |
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Preference number: 5 (lower is better) Translates to: RRGRAVENCAYTFES*VQVLLVAQVAYKEL Trigger: CAGTTCTTTATAGGCGACCTGTGCAACCAACAGGACCTGTACCCAGCTCTCAAAGGTGTAAGCACAGTTTTCCACTGCGCGTCCCCTCCG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS TCA 90 bp | AGAGCTGCATCTTGGGAGAGGTGCTCAGCGGCTAAGATGTGTCCATaGACCACATTCTCCACGAAGGTGAAGTCCACCAGGTTTTCCCCA | + |
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Preference number: 5 (lower is better) Translates to: RAASWERCSAAKMCP*TTFSTKVKSTRFSP Trigger: TGGGGAAAACCTGGTGGACTTCACCTTCGTGGAGAATGTGGTTCATGGACACATCTTAGCCGCTGAGCACCTCTCCCAAGATGCAGCTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS TCA 90 bp | CGGGACAGGAACGTCCAGAAAGGGATTGGTTCATCGTTGGTGATGTaGAATGCCTTTCCACCTAGAGCTGCATCTTGGGAGAGGTGCTCA | + |
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Preference number: 5 (lower is better) Translates to: RDRNVQKGIGSSLVM*NAFPPRAASWERCS Trigger: TGAGCACCTCTCCCAAGATGCAGCTCTAGGTGGAAAGGCATTTCACATCACCAACGATGAACCAATCCCTTTCTGGACGTTCCTGTCCCG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR CAA 90 bp | GAGAACAGAAATGGCTGGATTGTTAGTGGCCTGTACTCTTTGGAAAGTGGCCTACCAACTGGGGGTCCCTaGGGCCGAAAATGCCATGAG | + |
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Preference number: 5 (lower is better) Translates to: ENRNGWIVSGLYSLESGLPTGGP*GRKCHE Trigger: CTCATGGCATTTTCGGCCCAAGGGACCCCCAGTTGG...TAGGCCACTTTCCAAAGAGTACAGGCCACTAACAATCCAGCCATTTCTGTTCTC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS TCA 90 bp | GAATGCGGGACAGGAACGTCCAGAAAGGGATTGGTTCATCGTTGGTaGTGTGAAATGCCTTTCCACCTAGAGCTGCATCTTGGGAGAGGT | + |
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Preference number: 5 (lower is better) Translates to: ECGTGTSRKGLVHRW*CEMPFHLELHLGRG Trigger: ACCTCTCCCAAGATGCAGCTCTAGGTGGAAAGGCATTTCACATCACCAACGATGAACCAATCCCTTTCTGGACGTTCCTGTCCCGCATTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS TCA 90 bp | GGTGGTGGAAACTCTGCACAGTCCTTTCCACAGCTTCATCCATGGTaGCCAGTGGCCGGTACCCAAAGAGCTTTTTGGCTTTTTCACAAC | + |
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Preference number: 5 (lower is better) Translates to: GGGNSAQSFPQLHPW*PVAGTQRAFWLFHN Trigger: GTTGTGAAAAAGCCAAAAAGCTCTTTGGGTACCGGCCACTGGTCACCATGGATGAAGCTGTGGAAAGGACTGTGCAGAGTTTCCACCACC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS CCA 90 bp | TGGAAAACTGTGCTTACACCTTTGAGAGCTGGGTACAGGTCCTGTTaGTTGCACAGGTCGCCTATAAAGAACTGCACCCGGGGGTTATCA | + |
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Preference number: 5 (lower is better) Translates to: WKTVLTPLRAGYRSC*LHRSPIKNCTRGLS Trigger: TGATAACCCCCGGGTGCAGTTCTTTATAGGCGACCTGTGCAACCAACAGGACCTGTACCCAGCTCTCAAAGGTGTAAGCACAGTTTTCCA 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS GCA 90 bp | GCTGGGTACAGGTCCTGTTGGTTGCACAGGTCGCCTATAAAGAACTaGACCCGGGGGTTATCAAAGCCTTGGTGGATATCAAATACATTG | + |
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Preference number: 5 (lower is better) Translates to: AGYRSCWLHRSPIKN*TRGLSKPWWISNTL Trigger: CAATGTATTTGATATCCACCAAGGCTTTGATAACCCCCGGGTGCAGTTCTTTATAGGCGACCTGTGCAACCAACAGGACCTGTACCCAGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS CCA 90 bp | GTTCCAGCCAATGCCACTCGAATTGGTGTAAAGGTTGGCTGGATTTaGATGAGAGGGCTGACCACCATCACCAGTAGAGATAGCAGGAAA | + |
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Preference number: 5 (lower is better) Translates to: VPANATRIGVKVGWI*MRGLTTITSRDSRK Trigger: TTTCCTGCTATCTCTACTGGTGATGGTGGTCAGCCCTCTCATCCAAATCCAGCCAACCTTTACACCAATTCGAGTGGCATTGGCTGGAAC 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS CCA 90 bp | TGGAATGTTCCAGCCAATGCCACTCGAATTGGTGTAAAGGTTGGCTaGATTTGGATGAGAGGGCTGACCACCATCACCAGTAGAGATAGC | + |
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Preference number: 5 (lower is better) Translates to: WNVPANATRIGVKVG*IWMRGLTTITSRDS Trigger: GCTATCTCTACTGGTGATGGTGGTCAGCCCTCTCATCCAAATCCAGCCAACCTTTACACCAATTCGAGTGGCATTGGCTGGAACATTCCA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS CCA 90 bp | TTCACAACTGTAATAGTGGAATGTTCCAGCCAATGCCACTCGAATTaGTGTAAAGGTTGGCTGGATTTGGATGAGAGGGCTGACCACCAT | + |
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Preference number: 5 (lower is better) Translates to: FTTVIVECSSQCHSN*CKGWLDLDERADHH Trigger: ATGGTGGTCAGCCCTCTCATCCAAATCCAGCCAACCTTTACACCAATTCGAGTGGCATTGGCTGGAACATTCCACTATTACAGTTGTGAA 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS CCA 90 bp | GAAACTCTGCACAGTCCTTTCCACAGCTTCATCCATGGTGACCAGTaGCCGGTACCCAAAGAGCTTTTTGGCTTTTTCACAACTGTAATA | + |
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Preference number: 5 (lower is better) Translates to: ETLHSPFHSFIHGDQ*PVPKELFGFFTTVI Trigger: TATTACAGTTGTGAAAAAGCCAAAAAGCTCTTTGGGTACCGGCCACTGGTCACCATGGATGAAGCTGTGGAAAGGACTGTGCAGAGTTTC 47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR CAA 90 bp | CAAGAATACATTTCAATGAGTTCAGAGAACAGAAATGGCTGGATTGTTAGTGGCACTGTGCTTACACCTTaGAGAGCTGGGTACAGGTCC | + |
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Preference number: 5 (lower is better) Translates to: QEYISMSSENRNGWIVSGTVLTP*RAGYRS Trigger: GGACCTGTACCCAGCTCTCAAAGGTGTAAGCACAGT...GCCACTAACAATCCAGCCATTTCTGTTCTCTGAACTCATTGAAATGTATTCTTG 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS GCA 90 bp | CTTTTTGGCTTTTTCACAACTGTAATAGTGGAATGTTCCAGCCAATaGCACTCGAATTGGTGTAAAGGTTGGCTGGATTTGGATGAGAGG | + |
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Preference number: 5 (lower is better) Translates to: LFGFFTTVIVECSSQ*HSNWCKGWLDLDER Trigger: CCTCTCATCCAAATCCAGCCAACCTTTACACCAATTCGAGTGGCATTGGCTGGAACATTCCACTATTACAGTTGTGAAAAAGCCAAAAAG 43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR CAA 90 bp | TCCTGTTTATTAGGAGCTGACCAGCTAACACAGCACACACTGTACCATTGCATTGGGGTTATCAAAGCCTaGGTGGATATCAAATACATT | + |
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Preference number: 5 (lower is better) Translates to: SCLLGADQLTQHTLYHCIGVIKA*VDIKYI Trigger: AATGTATTTGATATCCACCAAGGCTTTGATAACCCC...AATGCAATGGTACAGTGTGTGCTGTGTTAGCTGGTCAGCTCCTAATAAACAGGA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR CAA 90 bp | GGGCAAGGAACCAGCAGTGGATTTATCCTTAAGGATTGGGGATTACATTCATCAATCATGAACTTCATTTaGCCCTTTCTAGCTGCATCA | + |
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Preference number: 5 (lower is better) Translates to: GQGTSSGFILKDWGLHSSIMNFI*PFLAAS Trigger: TGATGCAGCTAGAAAGGGCAAAATGAAGTTCATGAT...TGATGAATGTAATCCCCAATCCTTAAGGATAAATCCACTGCTGGTTCCTTGCCC 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR CAA 90 bp | GGCCTAATAATGTTCTGTGAAATGAGCTGCAAAGATGTCTGTAACCCATTCTGCGTTTCAATGACAGTCTaGGTGCCAATGAAATTCACT | + |
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Preference number: 5 (lower is better) Translates to: GLIMFCEMSCKDVCNPFCVSMTV*VPMKFT Trigger: AGTGAATTTCATTGGCACCAAGACTGTCATTGAAAC...GCAGAATGGGTTACAGACATCTTTGCAGCTCATTTCACAGAACATTATTAGGCC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS-3UTR CAA 90 bp | CAAGAATACATTTCAATGAGTTCAGAGAACAGAAATGGCTGGATTGTTAGTGGCGTGCACTTCTTAGCTTaGGAAATGTCATTTGTCAAA | + |
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Preference number: 5 (lower is better) Translates to: QEYISMSSENRNGWIVSGVHFLA*EMSFVK Trigger: TTTGACAAATGACATTTCCAAAGCTAAGAAGTGCAC...GCCACTAACAATCCAGCCATTTCTGTTCTCTGAACTCATTGAAATGTATTCTTG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS CAA 90 bp | CTGTACGGCGGAGGGGACGCGCAGTGGAAAACTGTGCTTACACCTTaGAGAGCTGGGTACAGGTCCTGTTGGTTGCACAGGTCGCCTATA | + |
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Preference number: 6 (lower is better) Translates to: LYGGGDAQWKTVLTP*RAGYRSCWLHRSPI Trigger: TATAGGCGACCTGTGCAACCAACAGGACCTGTACCCAGCTCTCAAAGGTGTAAGCACAGTTTTCCACTGCGCGTCCCCTCCGCCGTACAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS CAA 72 bp | GGAGGGGACGCGCAGTGGAAAACTGTGCTTACACCTTaGAGAGCTGGGTACAGGTCCTGTTGGTTGCACAGG | + |
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Preference number: 6 (lower is better) Translates to: GGDAQWKTVLTP*RAGYRSCWLHR Trigger: CCTGTGCAACCAACAGGACCTGTACCCAGCTCTCAAAGGTGTAAGCACAGTTTTCCACTGCGCGTCCCCTCC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS CAA 72 bp | CTGCATCAATTAGGATTGGGACCAACTGGGGGTCCCTaGGGCCGAAAATGCCATGAGGACGAATGGCTGCGG | + |
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Preference number: 6 (lower is better) Translates to: LHQLGLGPTGGP*GRKCHEDEWLR Trigger: CCGCAGCCATTCGTCCTCATGGCATTTTCGGCCCAAGGGACCCCCAGTTGGTCCCAATCCTAATTGATGCAG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS TCA 72 bp | GAGGGGACGCGCAGTGGAAAACTGTGCTTACACCTTTaGGAGCTGGGTACAGGTCCTGTTGGTTGCACAGGT | + |
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Preference number: 6 (lower is better) Translates to: EGTRSGKLCLHL*ELGTGPVGCTG Trigger: ACCTGTGCAACCAACAGGACCTGTACCCAGCTCTCAAAGGTGTAAGCACAGTTTTCCACTGCGCGTCCCCTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS CAA 72 bp | CTTACACCTTTGAGAGCTGGGTACAGGTCCTGTTGGTaGCACAGGTCGCCTATAAAGAACTGCACCCGGGGG | + |
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Preference number: 6 (lower is better) Translates to: LTPLRAGYRSCW*HRSPIKNCTRG Trigger: CCCCCGGGTGCAGTTCTTTATAGGCGACCTGTGCAACCAACAGGACCTGTACCCAGCTCTCAAAGGTGTAAG 56% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS CCA 72 bp | GTGCTTACACCTTTGAGAGCTGGGTACAGGTCCTGTTaGTTGCACAGGTCGCCTATAAAGAACTGCACCCGG | + |
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Preference number: 6 (lower is better) Translates to: VLTPLRAGYRSC*LHRSPIKNCTR Trigger: CCGGGTGCAGTTCTTTATAGGCGACCTGTGCAACCAACAGGACCTGTACCCAGCTCTCAAAGGTGTAAGCAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS CCA 72 bp | CCAGCCAATGCCACTCGAATTGGTGTAAAGGTTGGCTaGATTTGGATGAGAGGGCTGACCACCATCACCAGT | + |
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Preference number: 6 (lower is better) Translates to: PANATRIGVKVG*IWMRGLTTITS Trigger: ACTGGTGATGGTGGTCAGCCCTCTCATCCAAATCCAGCCAACCTTTACACCAATTCGAGTGGCATTGGCTGG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS CAA 72 bp | TGTGCTTACACCTTTGAGAGCTGGGTACAGGTCCTGTaGGTTGCACAGGTCGCCTATAAAGAACTGCACCCG | + |
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Preference number: 6 (lower is better) Translates to: CAYTFESWVQVL*VAQVAYKELHP Trigger: CGGGTGCAGTTCTTTATAGGCGACCTGTGCAACCAACAGGACCTGTACCCAGCTCTCAAAGGTGTAAGCACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS CAA 90 bp | GTGGAAAACTGTGCTTACACCTTTGAGAGCTGGGTACAGGTCCTGTaGGTTGCACAGGTCGCCTATAAAGAACTGCACCCGGGGGTTATC | + |
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Preference number: 6 (lower is better) Translates to: VENCAYTFESWVQVL*VAQVAYKELHPGVI Trigger: GATAACCCCCGGGTGCAGTTCTTTATAGGCGACCTGTGCAACCAACAGGACCTGTACCCAGCTCTCAAAGGTGTAAGCACAGTTTTCCAC 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS CAA 90 bp | TGCCCCAGGAACCCAGAGCCTCCAATCACTGTGCACTTCTTAGCTTaGGAAATGTCATTTGTCAAATGTGTTCCTGTGACCTGGCCTCGC | + |
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Preference number: 6 (lower is better) Translates to: CPRNPEPPITVHFLA*EMSFVKCVPVTWPR Trigger: GCGAGGCCAGGTCACAGGAACACATTTGACAAATGACATTTCCAAAGCTAAGAAGTGCACAGTGATTGGAGGCTCTGGGTTCCTGGGGCA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS TCA 72 bp | AACTCTGCACAGTCCTTTCCACAGCTTCATCCATGGTaGCCAGTGGCCGGTACCCAAAGAGCTTTTTGGCTT | + |
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Preference number: 6 (lower is better) Translates to: NSAQSFPQLHPW*PVAGTQRAFWL Trigger: AAGCCAAAAAGCTCTTTGGGTACCGGCCACTGGTCACCATGGATGAAGCTGTGGAAAGGACTGTGCAGAGTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS CCA 72 bp | TGTTCCAGCCAATGCCACTCGAATTGGTGTAAAGGTTaGCTGGATTTGGATGAGAGGGCTGACCACCATCAC | + |
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Preference number: 6 (lower is better) Translates to: CSSQCHSNWCKG*LDLDERADHHH Trigger: GTGATGGTGGTCAGCCCTCTCATCCAAATCCAGCCAACCTTTACACCAATTCGAGTGGCATTGGCTGGAACA 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS CAA 90 bp | AAAACTGTGCTTACACCTTTGAGAGCTGGGTACAGGTCCTGTTGGTaGCACAGGTCGCCTATAAAGAACTGCACCCGGGGGTTATCAAAG | + |
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Preference number: 6 (lower is better) Translates to: KTVLTPLRAGYRSCW*HRSPIKNCTRGLSK Trigger: CTTTGATAACCCCCGGGTGCAGTTCTTTATAGGCGACCTGTGCAACCAACAGGACCTGTACCCAGCTCTCAAAGGTGTAAGCACAGTTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS CCA 72 bp | CACAGTCCTTTCCACAGCTTCATCCATGGTGACCAGTaGCCGGTACCCAAAGAGCTTTTTGGCTTTTTCACA | + |
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Preference number: 6 (lower is better) Translates to: HSPFHSFIHGDQ*PVPKELFGFFT Trigger: TGTGAAAAAGCCAAAAAGCTCTTTGGGTACCGGCCACTGGTCACCATGGATGAAGCTGTGGAAAGGACTGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS CAA 90 bp | GCACAGGTCGCCTATAAAGAACTGCACCCGGGGGTTATCAAAGCCTaGGTGGATATCAAATACATTGACAGTATAGCCTCGCTCCAGCAA | + |
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Preference number: 6 (lower is better) Translates to: AQVAYKELHPGVIKA*VDIKYIDSIASLQQ Trigger: TTGCTGGAGCGAGGCTATACTGTCAATGTATTTGATATCCACCAAGGCTTTGATAACCCCCGGGTGCAGTTCTTTATAGGCGACCTGTGC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS TCA 72 bp | GGGGGTTATCAAAGCCTTGGTGGATATCAAATACATTaGCAGTATAGCCTCGCTCCAGCAACTGCTCCACCA | + |
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Preference number: 6 (lower is better) Translates to: GGYQSLGGYQIH*QYSLAPATAPP Trigger: TGGTGGAGCAGTTGCTGGAGCGAGGCTATACTGTCAATGTATTTGATATCCACCAAGGCTTTGATAACCCCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS TCA 72 bp | CACCCTCAAAGACAACACTGGCACTGCTGGTTAAAATaGGTTTCTGAACTCCGGCCTCTCTGCAGGTTTCAA | + |
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Preference number: 6 (lower is better) Translates to: HPQRQHWHCWLK*VSELRPLCRFQ Trigger: TTGAAACCTGCAGAGAGGCCGGAGTTCAGAAACTCATTTTAACCAGCAGTGCCAGTGTTGTCTTTGAGGGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS TCA 72 bp | AACGTCCAGAAAGGGATTGGTTCATCGTTGGTGATGTaGAATGCCTTTCCACCTAGAGCTGCATCTTGGGAG | + |
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Preference number: 6 (lower is better) Translates to: NVQKGIGSSLVM*NAFPPRAASWE Trigger: CTCCCAAGATGCAGCTCTAGGTGGAAAGGCATTTCACATCACCAACGATGAACCAATCCCTTTCTGGACGTT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS CCA 72 bp | AATGCCACTCGAATTGGTGTAAAGGTTGGCTGGATTTaGATGAGAGGGCTGACCACCATCACCAGTAGAGAT | + |
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Preference number: 6 (lower is better) Translates to: NATRIGVKVGWI*MRGLTTITSRD Trigger: ATCTCTACTGGTGATGGTGGTCAGCCCTCTCATCCAAATCCAGCCAACCTTTACACCAATTCGAGTGGCATT 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS TCA 72 bp | ACAGGAACGTCCAGAAAGGGATTGGTTCATCGTTGGTaGTGTGAAATGCCTTTCCACCTAGAGCTGCATCTT | + |
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Preference number: 6 (lower is better) Translates to: TGTSRKGLVHRW*CEMPFHLELHL Trigger: AAGATGCAGCTCTAGGTGGAAAGGCATTTCACATCACCAACGATGAACCAATCCCTTTCTGGACGTTCCTGT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS CCA 72 bp | GTAATAGTGGAATGTTCCAGCCAATGCCACTCGAATTaGTGTAAAGGTTGGCTGGATTTGGATGAGAGGGCT | + |
|
Preference number: 6 (lower is better) Translates to: VIVECSSQCHSN*CKGWLDLDERA Trigger: AGCCCTCTCATCCAAATCCAGCCAACCTTTACACCAATTCGAGTGGCATTGGCTGGAACATTCCACTATTAC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS CAA 72 bp | GCCTATAAAGAACTGCACCCGGGGGTTATCAAAGCCTaGGTGGATATCAAATACATTGACAGTATAGCCTCG | + |
|
Preference number: 6 (lower is better) Translates to: AYKELHPGVIKA*VDIKYIDSIAS Trigger: CGAGGCTATACTGTCAATGTATTTGATATCCACCAAGGCTTTGATAACCCCCGGGTGCAGTTCTTTATAGGC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS CAA 72 bp | AACCCAGAGCCTCCAATCACTGTGCACTTCTTAGCTTaGGAAATGTCATTTGTCAAATGTGTTCCTGTGACC | + |
|
Preference number: 6 (lower is better) Translates to: NPEPPITVHFLA*EMSFVKCVPVT Trigger: GGTCACAGGAACACATTTGACAAATGACATTTCCAAAGCTAAGAAGTGCACAGTGATTGGAGGCTCTGGGTT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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| CDS GCA 72 bp | TTTTTCACAACTGTAATAGTGGAATGTTCCAGCCAATaGCACTCGAATTGGTGTAAAGGTTGGCTGGATTTG | + |
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Preference number: 6 (lower is better) Translates to: FFTTVIVECSSQ*HSNWCKGWLDL Trigger: CAAATCCAGCCAACCTTTACACCAATTCGAGTGGCATTGGCTGGAACATTCCACTATTACAGTTGTGAAAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000033715.5 |
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