RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NSCME3L (Mus musculus)

Ensembl gene IDs: ENSMUSG00000100937

Ensembl transcript IDs: ENSMUST00000189704.2

Found 40 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS-3UTR GCA 90 bp ATTGTGGAAATATGCTCCTTCTGCACCCATCTTCCCTATTTTTCTAGCTTATGCGTGCCTGGGGTGTCCTaGGAGGCATCAGGGTGTCCA +
Preference number: 4 (lower is better)
Translates to: IVEICSFCTHLPYFSSLCVPGVS*EASGCP
Trigger: TGGACACCCTGATGCCTCGCAGGACACCCCAGGCAC...GCATAAGCTAGAAAAATAGGGAAGATGGGTGCAGAAGGAGCATATTTCCACAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS-3UTR GCA 90 bp ATTATTGTGGAAATATGCTCCTTCTGCACCCATCTTCCCTATTTTTCTAGCTTAAGCTTGGCGACGGGGTaGCTGGGGTGTCCTGCGAGG +
Preference number: 4 (lower is better)
Translates to: IIVEICSFCTHLPYFSSLSLATG*LGCPAR
Trigger: CCTCGCAGGACACCCCAGGCACCCCGTCGCCAAGCT...TAAGCTAGAAAAATAGGGAAGATGGGTGCAGAAGGAGCATATTTCCACAATAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS-3UTR CCA 90 bp ATTGTGGAAATATGCTCCTTCTGCACCCATCTTCCCTATTTTTCTAGCTTATGCGCTCGCGGACCCCACTaGAGCTCACAGTCCACAGGA +
Preference number: 4 (lower is better)
Translates to: IVEICSFCTHLPYFSSLCARGPH*SSQSTG
Trigger: TCCTGTGGACTGTGAGCTCCAGTGGGGTCCGCGAGC...GCATAAGCTAGAAAAATAGGGAAGATGGGTGCAGAAGGAGCATATTTCCACAAT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS-3UTR TCA 90 bp ATTATTGTGGAAATATGCTCCTTCTGCACCCATCTTCCCTATTTTTCTAGCTTAGAGGTGGCCTGGACCTaGCGAAAGCTTGGCGACGGG +
Preference number: 4 (lower is better)
Translates to: IIVEICSFCTHLPYFSSLEVAWT*RKLGDG
Trigger: CCCGTCGCCAAGCTTTCGTCAGGTCCAGGCCACCTC...TAAGCTAGAAAAATAGGGAAGATGGGTGCAGAAGGAGCATATTTCCACAATAAT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS-3UTR GCA 90 bp ATTGTGGAAATATGCTCCTTCTGCACCCATCTTCCCTATTTTTCTAGCTTATGCGCTGGTTTCCAGATTTaGTCGCGGACCCCACTGGAG +
Preference number: 4 (lower is better)
Translates to: IVEICSFCTHLPYFSSLCAGFQI*SRTPLE
Trigger: CTCCAGTGGGGTCCGCGAGCAAATCTGGAAACCAGC...GCATAAGCTAGAAAAATAGGGAAGATGGGTGCAGAAGGAGCATATTTCCACAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS-3UTR CCA 90 bp ATTATTGTGGAAATATGCTCCTTCTGCACCCATCTTCCCTATTTTTCTAGCTTAGCTCCGGAGCAGAGGTaGCCTGGACCTGACGAAAGC +
Preference number: 4 (lower is better)
Translates to: IIVEICSFCTHLPYFSSLAPEQR*PGPDES
Trigger: GCTTTCGTCAGGTCCAGGCCACCTCTGCTCCGGAGC...TAAGCTAGAAAAATAGGGAAGATGGGTGCAGAAGGAGCATATTTCCACAATAAT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS-3UTR GCA 90 bp ATTGTGGAAATATGCTCCTTCTGCACCCATCTTCCCTATTTTTCTAGCTTATGCACCTTAAGCTCCAGCTaGTTCTGGGTCCAGAGCTCC +
Preference number: 4 (lower is better)
Translates to: IVEICSFCTHLPYFSSLCTLSSS*FWVQSS
Trigger: GGAGCTCTGGACCCAGAAGCAGCTGGAGCTTAAGGT...GCATAAGCTAGAAAAATAGGGAAGATGGGTGCAGAAGGAGCATATTTCCACAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS-3UTR CCA 90 bp ATTATTGTGGAAATATGCTCCTTCTGCACCCATCTTCCCTATTTTTCTAGCTTAAGCTCCAGCTGCTTCTaGGTCCAGAGCTCCGGAGCA +
Preference number: 4 (lower is better)
Translates to: IIVEICSFCTHLPYFSSLSSSCF*VQSSGA
Trigger: TGCTCCGGAGCTCTGGACCCAGAAGCAGCTGGAGCT...TAAGCTAGAAAAATAGGGAAGATGGGTGCAGAAGGAGCATATTTCCACAATAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS-3UTR CCA 90 bp ATTGTGGAAATATGCTCCTTCTGCACCCATCTTCCCTATTTTTCTAGCTTATGCCAGAGCTGGACCATTTaGCTCTGGTCTGACCCTACG +
Preference number: 4 (lower is better)
Translates to: IVEICSFCTHLPYFSSLCQSWTI*LWSDPT
Trigger: CGTAGGGTCAGACCAGAGCCAAATGGTCCAGCTCTG...GCATAAGCTAGAAAAATAGGGAAGATGGGTGCAGAAGGAGCATATTTCCACAAT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS-3UTR TCA 90 bp ATTGTGGAAATATGCTCCTTCTGCACCCATCTTCCCTATTTTTCTAGCTTATGCAAAGCTTCACAGTACTaGGTGGGCCAGTCCTTGGGA +
Preference number: 4 (lower is better)
Translates to: IVEICSFCTHLPYFSSLCKASQY*VGQSLG
Trigger: TCCCAAGGACTGGCCCACTCAGTACTGTGAAGCTTT...GCATAAGCTAGAAAAATAGGGAAGATGGGTGCAGAAGGAGCATATTTCCACAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS-3UTR TCA 90 bp TTAATTATTGTGGAAATATGCTCCTTCTGCACCCATCTTCCCTATTTTTCTAGCCATTTGGCTCTGGTCTaGCCCTACGCTGCTCATCCG +
Preference number: 4 (lower is better)
Translates to: LIIVEICSFCTHLPYFSSHLALV*PYAAHP
Trigger: CGGATGAGCAGCGTAGGGTCAGACCAGAGCCAAATG...GCTAGAAAAATAGGGAAGATGGGTGCAGAAGGAGCATATTTCCACAATAATTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS-3UTR GCA 90 bp TTATTGTGGAAATATGCTCCTTCTGCACCCATCTTCCCTATTTTTCTAGCTTATTCAGTTCACCATCCTTaGCCACTGGCTCCAGGGCGT +
Preference number: 4 (lower is better)
Translates to: LLWKYAPSAPIFPIFLAYSVHHP*PLAPGR
Trigger: ACGCCCTGGAGCCAGTGGGCAAGGATGGTGAACTGA...ATAAGCTAGAAAAATAGGGAAGATGGGTGCAGAAGGAGCATATTTCCACAATAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS-3UTR GCA 90 bp TTAATTATTGTGGAAATATGCTCCTTCTGCACCCATCTTCCCTATTTTTCTAGCGAACTGCACCAGCTCTaGCACCTTAAGCTCCAGCTG +
Preference number: 4 (lower is better)
Translates to: LIIVEICSFCTHLPYFSSELHQL*HLKLQL
Trigger: CAGCTGGAGCTTAAGGTGGCAGAGCTGGTGCAGTTC...GCTAGAAAAATAGGGAAGATGGGTGCAGAAGGAGCATATTTCCACAATAATTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS-3UTR CCA 90 bp ATTGTGGAAATATGCTCCTTCTGCACCCATCTTCCCTATTTTTCTAGCTTATGCCTTCACAGTACTGAGTaGGCCAGTCCTTGGGATCTT +
Preference number: 4 (lower is better)
Translates to: IVEICSFCTHLPYFSSLCLHSTE*ASPWDL
Trigger: AAGATCCCAAGGACTGGCCCACTCAGTACTGTGAAG...GCATAAGCTAGAAAAATAGGGAAGATGGGTGCAGAAGGAGCATATTTCCACAAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS-3UTR TCA 90 bp ATTGTGGAAATATGCTCCTTCTGCACCCATCTTCCCTATTTTTCTAGCTTATGCCGGATAGCCGAAAACTaGATGCTTCTTGGTGGGATA +
Preference number: 4 (lower is better)
Translates to: IVEICSFCTHLPYFSSLCRIAEN*MLLGGI
Trigger: TATCCCACCAAGAAGCATTCAGTTTTCGGCTATCCG...GCATAAGCTAGAAAAATAGGGAAGATGGGTGCAGAAGGAGCATATTTCCACAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS-3UTR CCA 90 bp ATTATTGTGGAAATATGCTCCTTCTGCACCCATCTTCCCTATTTTTCTAGCTTATGTAGGCATTGCTCTTaGGGTCGAGTTCCACCAGCT +
Preference number: 4 (lower is better)
Translates to: IIVEICSFCTHLPYFSSLCRHCS*GRVPPA
Trigger: AGCTGGTGGAACTCGACCCCAAGAGCAATGCCTACA...TAAGCTAGAAAAATAGGGAAGATGGGTGCAGAAGGAGCATATTTCCACAATAAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS-3UTR TCA 90 bp ATTGTGGAAATATGCTCCTTCTGCACCCATCTTCCCTATTTTTCTAGCTTATGCATGTTTCATGATCCCTaGCTGCTTGATGGGAATCTT +
Preference number: 4 (lower is better)
Translates to: IVEICSFCTHLPYFSSLCMFHDP*LLDGNL
Trigger: AAGATTCCCATCAAGCAGTCAGGGATCATGAAACAT...GCATAAGCTAGAAAAATAGGGAAGATGGGTGCAGAAGGAGCATATTTCCACAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS-3UTR CCA 90 bp ATTATTGTGGAAATATGCTCCTTCTGCACCCATCTTCCCTATTTTTCTAGCTTACCAGACATCGTTTTCTaGGATGCTGTGGCCATTCAT +
Preference number: 4 (lower is better)
Translates to: IIVEICSFCTHLPYFSSLPDIVF*DAVAIH
Trigger: ATGAATGGCCACAGCATCCCAGAAAACGATGTCTGG...TAAGCTAGAAAAATAGGGAAGATGGGTGCAGAAGGAGCATATTTCCACAATAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS-3UTR GCA 90 bp TTAATTATTGTGGAAATATGCTCCTTCTGCACCCATCTTCCCTATTTTTCTAGCTTAATCAGCAAGAACTaGACCAGCTCTGCCACCTTA +
Preference number: 4 (lower is better)
Translates to: LIIVEICSFCTHLPYFSSLISKN*TSSATL
Trigger: TAAGGTGGCAGAGCTGGTGCAGTTCTTGCTGATTAA...GCTAGAAAAATAGGGAAGATGGGTGCAGAAGGAGCATATTTCCACAATAATTAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS-3UTR GCA 90 bp TTAATTATTGTGGAAATATGCTCCTTCTGCACCCATCTTCCCTATTTTTCTAGCTTCATGATCCCTGACTaGTTGATGGGAATCTTCCTC +
Preference number: 4 (lower is better)
Translates to: LIIVEICSFCTHLPYFSSFMIPD*LMGIFL
Trigger: GAGGAAGATTCCCATCAAGCAGTCAGGGATCATGAA...GCTAGAAAAATAGGGAAGATGGGTGCAGAAGGAGCATATTTCCACAATAATTAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS-3UTR CCA 90 bp ATTATTGTGGAAATATGCTCCTTCTGCACCCATCTTCCCTATTTTTCTAGCTTAGAGTGGGCCAGTCCTTaGGATCTTGATTATGGATTT +
Preference number: 4 (lower is better)
Translates to: IIVEICSFCTHLPYFSSLEWASP*DLDYGF
Trigger: AAATCCATAATCAAGATCCCAAGGACTGGCCCACTC...TAAGCTAGAAAAATAGGGAAGATGGGTGCAGAAGGAGCATATTTCCACAATAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS-3UTR TCA 90 bp TTATTGTGGAAATATGCTCCTTCTGCACCCATCTTCCCTATTTTTCTAGCTTATCAGTCCTTGGGATCTTaGTTATGGATTTTGGCTACA +
Preference number: 4 (lower is better)
Translates to: LLWKYAPSAPIFPIFLAYQSLGS*LWILAT
Trigger: TGTAGCCAAAATCCATAATCAAGATCCCAAGGACTG...ATAAGCTAGAAAAATAGGGAAGATGGGTGCAGAAGGAGCATATTTCCACAATAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS-3UTR GCA 90 bp ATTATTGTGGAAATATGCTCCTTCTGCACCCATCTTCCCTATTTTTCTAGCTTACATCGTTTTCTGGGATaGTGTGGCCATTCATTAAGA +
Preference number: 4 (lower is better)
Translates to: IIVEICSFCTHLPYFSSLHRFLG*CGHSLR
Trigger: TCTTAATGAATGGCCACAGCATCCCAGAAAACGATG...TAAGCTAGAAAAATAGGGAAGATGGGTGCAGAAGGAGCATATTTCCACAATAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS-3UTR CCA 90 bp TTATTGTGGAAATATGCTCCTTCTGCACCCATCTTCCCTATTTTTCTAGCTTATTTTTCTGGGATGCTGTaGCCATTCATTAAGATGAGC +
Preference number: 4 (lower is better)
Translates to: LLWKYAPSAPIFPIFLAYFSGML*PFIKMS
Trigger: GCTCATCTTAATGAATGGCCACAGCATCCCAGAAAA...ATAAGCTAGAAAAATAGGGAAGATGGGTGCAGAAGGAGCATATTTCCACAATAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS-3UTR CCA 90 bp TTAATTATTGTGGAAATATGCTCCTTCTGCACCCATCTTCCCTATTTTTCTAGCCAGTTTAAGCAGGTCTaGGAAGATGTTTTTGTAGTC +
Preference number: 4 (lower is better)
Translates to: LIIVEICSFCTHLPYFSSQFKQV*EDVFVV
Trigger: GACTACAAAAACATCTTCCCAGACCTGCTTAAACTG...GCTAGAAAAATAGGGAAGATGGGTGCAGAAGGAGCATATTTCCACAATAATTAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS CCA 90 bp GGTGGGCGTTCTCTGGTAGCCTCTCAGTTCACCATCCTTGCCCACTaGCTCCAGGGCGTTGATGAGGATGTAGGCATTGCTCTTGGGGTC +
Preference number: 5 (lower is better)
Translates to: GGRSLVASQFTILAH*LQGVDEDVGIALGV
Trigger: GACCCCAAGAGCAATGCCTACATCCTCATCAACGCCCTGGAGCCAGTGGGCAAGGATGGTGAACTGAGAGGCTACCAGAGAACGCCCACC
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS GCA 90 bp GTCGAGTTCCACCAGCTTGTACCCGAACACGTAGTGGAGCCGTTCTaGAGCCAGTTTAAGCAGGTCTGGGAAGATGTTTTTGTAGTCTCG +
Preference number: 5 (lower is better)
Translates to: VEFHQLVPEHVVEPF*SQFKQVWEDVFVVS
Trigger: CGAGACTACAAAAACATCTTCCCAGACCTGCTTAAACTGGCTGCAGAACGGCTCCACTACGTGTTCGGGTACAAGCTGGTGGAACTCGAC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS-3UTR CAA 90 bp ATTATTGTGGAAATATGCTCCTTCTGCACCCATCTTCCCTATTTTTCTAGCTTATGCTGGTTTCCAGATTaGCTCGCGGACCCCACTGGA +
Preference number: 5 (lower is better)
Translates to: IIVEICSFCTHLPYFSSLCWFPD*LADPTG
Trigger: TCCAGTGGGGTCCGCGAGCAAATCTGGAAACCAGCA...TAAGCTAGAAAAATAGGGAAGATGGGTGCAGAAGGAGCATATTTCCACAATAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS-3UTR CAA 90 bp TTAATTATTGTGGAAATATGCTCCTTCTGCACCCATCTTCCCTATTTTTCTAGCATGATCCCTGACTGCTaGATGGGAATCTTCCTCTGG +
Preference number: 5 (lower is better)
Translates to: LIIVEICSFCTHLPYFSSMIPDC*MGIFLW
Trigger: CCAGAGGAAGATTCCCATCAAGCAGTCAGGGATCAT...GCTAGAAAAATAGGGAAGATGGGTGCAGAAGGAGCATATTTCCACAATAATTAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS-3UTR CAA 90 bp ATTATTGTGGAAATATGCTCCTTCTGCACCCATCTTCCCTATTTTTCTAGCTTACCAGTCCTTGGGATCTaGATTATGGATTTTGGCTAC +
Preference number: 5 (lower is better)
Translates to: IIVEICSFCTHLPYFSSLPVLGI*IMDFGY
Trigger: GTAGCCAAAATCCATAATCAAGATCCCAAGGACTGG...TAAGCTAGAAAAATAGGGAAGATGGGTGCAGAAGGAGCATATTTCCACAATAAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS TCA 72 bp TGGGTCCAGAGCTCCGGAGCAGAGGTGGCCTGGACCTaGCGAAAGCTTGGCGACGGGGTGCCTGGGGTGTCC +
Preference number: 6 (lower is better)
Translates to: WVQSSGAEVAWT*RKLGDGVPGVS
Trigger: GGACACCCCAGGCACCCCGTCGCCAAGCTTTCGTCAGGTCCAGGCCACCTCTGCTCCGGAGCTCTGGACCCA
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS CCA 72 bp CTCCGGAGCAGAGGTGGCCTGGACCTGACGAAAGCTTaGCGACGGGGTGCCTGGGGTGTCCTGCGAGGCATC +
Preference number: 6 (lower is better)
Translates to: LRSRGGLDLTKA*RRGAWGVLRGI
Trigger: GATGCCTCGCAGGACACCCCAGGCACCCCGTCGCCAAGCTTTCGTCAGGTCCAGGCCACCTCTGCTCCGGAG
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS CAA 72 bp GCTCCGGAGCAGAGGTGGCCTGGACCTGACGAAAGCTaGGCGACGGGGTGCCTGGGGTGTCCTGCGAGGCAT +
Preference number: 6 (lower is better)
Translates to: APEQRWPGPDES*ATGCLGCPARH
Trigger: ATGCCTCGCAGGACACCCCAGGCACCCCGTCGCCAAGCTTTCGTCAGGTCCAGGCCACCTCTGCTCCGGAGC
68% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS GCA 72 bp AGGTGGCCTGGACCTGACGAAAGCTTGGCGACGGGGTaGCTGGGGTGTCCTGCGAGGCATCAGGGTGTCCAG +
Preference number: 6 (lower is better)
Translates to: RWPGPDESLATG*LGCPARHQGVQ
Trigger: CTGGACACCCTGATGCCTCGCAGGACACCCCAGGCACCCCGTCGCCAAGCTTTCGTCAGGTCCAGGCCACCT
67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS CCA 72 bp TCTCTGGTAGCCTCTCAGTTCACCATCCTTGCCCACTaGCTCCAGGGCGTTGATGAGGATGTAGGCATTGCT +
Preference number: 6 (lower is better)
Translates to: SLVASQFTILAH*LQGVDEDVGIA
Trigger: AGCAATGCCTACATCCTCATCAACGCCCTGGAGCCAGTGGGCAAGGATGGTGAACTGAGAGGCTACCAGAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS GCA 72 bp ATGGGAATCTTCCTCTGGTCCTTAATCAGCAAGAACTaGACCAGCTCTGCCACCTTAAGCTCCAGCTGCTTC +
Preference number: 6 (lower is better)
Translates to: MGIFLWSLISKN*TSSATLSSSCF
Trigger: GAAGCAGCTGGAGCTTAAGGTGGCAGAGCTGGTGCAGTTCTTGCTGATTAAGGACCAGAGGAAGATTCCCAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS GCA 72 bp CACCAGCTTGTACCCGAACACGTAGTGGAGCCGTTCTaGAGCCAGTTTAAGCAGGTCTGGGAAGATGTTTTT +
Preference number: 6 (lower is better)
Translates to: HQLVPEHVVEPF*SQFKQVWEDVF
Trigger: AAAAACATCTTCCCAGACCTGCTTAAACTGGCTGCAGAACGGCTCCACTACGTGTTCGGGTACAAGCTGGTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS CCA 72 bp TACGCTGCTCATCCGCCAAAGCTTCACAGTACTGAGTaGGCCAGTCCTTGGGATCTTGATTATGGATTTTGG +
Preference number: 6 (lower is better)
Translates to: YAAHPPKLHSTE*ASPWDLDYGFW
Trigger: CCAAAATCCATAATCAAGATCCCAAGGACTGGCCCACTCAGTACTGTGAAGCTTTGGCGGATGAGCAGCGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS CCA 72 bp GTAGTGGAGCCGTTCTGCAGCCAGTTTAAGCAGGTCTaGGAAGATGTTTTTGTAGTCTCGGACGACATGTTT +
Preference number: 6 (lower is better)
Translates to: VVEPFCSQFKQV*EDVFVVSDDMF
Trigger: AAACATGTCGTCCGAGACTACAAAAACATCTTCCCAGACCTGCTTAAACTGGCTGCAGAACGGCTCCACTAC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2
CDS TCA 72 bp GTCTTCAGTAATGAGTTTCTTCGGATAGCCGAAAACTaGATGCTTCTTGGTGGGATACACCCCCAAACGACG +
Preference number: 6 (lower is better)
Translates to: VFSNEFLRIAEN*MLLGGIHPQTT
Trigger: CGTCGTTTGGGGGTGTATCCCACCAAGAAGCATTCAGTTTTCGGCTATCCGAAGAAACTCATTACTGAAGAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000189704.2