Pregenerated sensors for NSA2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000060739Ensembl transcript IDs: ENSMUST00000073456.9, ENSMUST00000225410.2
Found 17 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGTGGTTCAGAAAGACCCCAGGGACGGTGTTTTCCTGACAGGGTGTaGTCTTCAGCAGTGAGTGGAATGACGTGTATGAGTGACGTCACT | + |
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Preference number: 1 (lower is better) Translates to: GGSERPQGRCFPDRV*SSAVSGMTCMSDVT Trigger: AGTGACGTCACTCATACACGTCATTCCACTCACTGCTGAAGACCACACCCTGTCAGGAAAACACCGTCCCTGGGGTCTTTCTGAACCACC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000073456.9 ENSMUST00000225410.2 |
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| 3UTR GCA 90 bp | TCATGTAACTATTTGAAGAGAGCAGCTTTTGCTTTGATGTCCATTTaGAATCTGGTGGTTCTGGGCGTGGTCTGTTACAGAAGTCATGCT | + |
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Preference number: 1 (lower is better) Translates to: SCNYLKRAAFALMSI*NLVVLGVVCYRSHA Trigger: AGCATGACTTCTGTAACAGACCACGCCCAGAACCACCAGATTGCAAATGGACATCAAAGCAAAAGCTGCTCTCTTCAAATAGTTACATGA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073456.9 |
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| 3UTR GCA 90 bp | AACTGTCAAACTGGGCAGTTTTATTTTCCTTTACAACTTAGTAAATaGTTGATGACTGCACATGAGGTAAGGCTGCTCGGTGGTTCAGAA | + |
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Preference number: 1 (lower is better) Translates to: NCQTGQFYFPLQLSK*LMTAHEVRLLGGSE Trigger: TTCTGAACCACCGAGCAGCCTTACCTCATGTGCAGTCATCAAGCATTTACTAAGTTGTAAAGGAAAATAAAACTGCCCAGTTTGACAGTT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000073456.9 ENSMUST00000225410.2 |
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| 3UTR CCA 90 bp | ATGTTAAAATCTAATTATAAGAAAGTGAAGTCACTCTGCCTTTCCTaGTCAGTCCTTTCCAAGGAACTAGGCCCGCCTTTTCCTTTAATA | + |
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Preference number: 1 (lower is better) Translates to: MLKSNYKKVKSLCLS*SVLSKELGPPFPLI Trigger: TATTAAAGGAAAAGGCGGGCCTAGTTCCTTGGAAAGGACTGACCAGGAAAGGCAGAGTGACTTCACTTTCTTATAATTAGATTTTAACAT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000073456.9 |
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| 3UTR-3UTR CCA 90 bp | CTCTGTGTGTTCACATTCTTCCACTTTGTGTCTACTTTCCTTTTACCGTTGATTGGTAAGGCTGCTCGGTaGTTCAGAAAGACCCCAGGG | + |
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Preference number: 2 (lower is better) Translates to: LCVFTFFHFVSTFLLPLIGKAAR*FRKTPG Trigger: CCCTGGGGTCTTTCTGAACCACCGAGCAGCCTTACC...AATCAACGGTAAAAGGAAAGTAGACACAAAGTGGAAGAATGTGAACACACAGAG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000073456.9 |
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| 3UTR-3UTR CCA 90 bp | CTCTGTGTGTTCACATTCTTCCACTTTGTGTCTACTTTCCTTTTACCGTTGATTGACCAACTGTCAAACTaGGCAGTTTTATTTTCCTTT | + |
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Preference number: 2 (lower is better) Translates to: LCVFTFFHFVSTFLLPLIDQLSN*AVLFSF Trigger: AAAGGAAAATAAAACTGCCCAGTTTGACAGTTGGTC...AATCAACGGTAAAAGGAAAGTAGACACAAAGTGGAAGAATGTGAACACACAGAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000073456.9 |
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| 3UTR CCA 72 bp | GAAAGACCCCAGGGACGGTGTTTTCCTGACAGGGTGTaGTCTTCAGCAGTGAGTGGAATGACGTGTATGAGT | + |
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Preference number: 3 (lower is better) Translates to: ERPQGRCFPDRV*SSAVSGMTCMS Trigger: ACTCATACACGTCATTCCACTCACTGCTGAAGACCACACCCTGTCAGGAAAACACCGTCCCTGGGGTCTTTC 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000073456.9 ENSMUST00000225410.2 |
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| 3UTR GCA 72 bp | TATTTGAAGAGAGCAGCTTTTGCTTTGATGTCCATTTaGAATCTGGTGGTTCTGGGCGTGGTCTGTTACAGA | + |
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Preference number: 3 (lower is better) Translates to: YLKRAAFALMSI*NLVVLGVVCYR Trigger: TCTGTAACAGACCACGCCCAGAACCACCAGATTGCAAATGGACATCAAAGCAAAAGCTGCTCTCTTCAAATA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073456.9 |
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| 3UTR CCA 72 bp | TCTGAAGTTGCTTCTCCTTTGGAATTACCTAAGCTGTaGTCACACCAGCAAACTGAAACAGATTTTGATGTA | + |
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Preference number: 3 (lower is better) Translates to: SEVASPLELPKL*SHQQTETDFDV Trigger: TACATCAAAATCTGTTTCAGTTTGCTGGTGTGACCACAGCTTAGGTAATTCCAAAGGAGAAGCAACTTCAGA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073456.9 |
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| 3UTR-3UTR CAA 90 bp | CTCTGTGTGTTCACATTCTTCCACTTTGTGTCTACTTTCCTTTTACCGTTGATTCACAATGGAAAATACTaGACCTTTACAGGAACTTTC | + |
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Preference number: 3 (lower is better) Translates to: LCVFTFFHFVSTFLLPLIHNGKY*TFTGTF Trigger: GAAAGTTCCTGTAAAGGTCAAGTATTTTCCATTGTG...AATCAACGGTAAAAGGAAAGTAGACACAAAGTGGAAGAATGTGAACACACAGAG 38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000073456.9 |
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| 3UTR CCA 72 bp | CCTTTCAATCTAATTAATTGCCACATCTCAAGTCACTaGTACATGGTGGAGAATTATCTAACCCAATTGTTC | + |
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Preference number: 3 (lower is better) Translates to: PFNLINCHISSH*YMVENYLTQLF Trigger: GAACAATTGGGTTAGATAATTCTCCACCATGTACCAGTGACTTGAGATGTGGCAATTAATTAGATTGAAAGG 38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073456.9 |
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| 3UTR TCA 72 bp | GTTGCATTCATGAAGATGTGCTTAGATATTAGACATTaGATGATTCTGTTAAAGGCACAGCTAATCACACTG | + |
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Preference number: 3 (lower is better) Translates to: VAFMKMCLDIRH*MILLKAQLITL Trigger: CAGTGTGATTAGCTGTGCCTTTAACAGAATCATTCAATGTCTAATATCTAAGCACATCTTCATGAATGCAAC 36% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073456.9 |
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| 3UTR TCA 72 bp | CAGGAACTTTCAACTATTCTGATGGCTTTTCAATTGTaGCAGACTTGTATTGCTGCATACATAGTTTTTAGT | + |
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Preference number: 3 (lower is better) Translates to: QELSTILMAFQL*QTCIAAYIVFS Trigger: ACTAAAAACTATGTATGCAGCAATACAAGTCTGTCACAATTGAAAAGCCATCAGAATAGTTGAAAGTTCCTG 35% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000073456.9 |
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| CDS-3UTR CCA 90 bp | GGTGGTTCAGAAAGACCCCAGGGACGGTGTTTTCCTGACAGGGTGTGGTCTTCACTTGGGCACGAACTTTaGGTAGAGGGACCTCCCATT | + |
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Preference number: 4 (lower is better) Translates to: GGSERPQGRCFPDRVWSSLGHEL*VEGPPI Trigger: AATGGGAGGTCCCTCTACCCAAAGTTCGTGCCCAAG...TGAAGACCACACCCTGTCAGGAAAACACCGTCCCTGGGGTCTTTCTGAACCACC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000073456.9 ENSMUST00000225410.2 |
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| CDS-3UTR CCA 90 bp | ATCTCAAGTCACTGGTACATGGTGGAGAATTATCTAACCCAATTGTTCACATTGCTTGGGCACGAACTTTaGGTAGAGGGACCTCCCATT | + |
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Preference number: 4 (lower is better) Translates to: ISSHWYMVENYLTQLFTLLGHEL*VEGPPI Trigger: AATGGGAGGTCCCTCTACCCAAAGTTCGTGCCCAAG...CAATGTGAACAATTGGGTTAGATAATTCTCCACCATGTACCAGTGACTTGAGAT 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000073456.9 |
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| 3UTR CAA 72 bp | TACTCATGTAACTATTTGAAGAGAGCAGCTTTTGCTTaGATGTCCATTTGCAATCTGGTGGTTCTGGGCGTG | + |
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Preference number: 4 (lower is better) Translates to: YSCNYLKRAAFA*MSICNLVVLGV Trigger: CACGCCCAGAACCACCAGATTGCAAATGGACATCAAAGCAAAAGCTGCTCTCTTCAAATAGTTACATGAGTA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000073456.9 |
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| CDS-3UTR CAA 90 bp | TATTTTCCTTTACAACTTAGTAAATGCTTGATGACTGCACATGAGGTAAGGCTGGTGACATGGGCTTTTTaGAAACGTAGACCCATGGGC | + |
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Preference number: 5 (lower is better) Translates to: YFPLQLSKCLMTAHEVRLVTWAF*KRRPMG Trigger: GCCCATGGGTCTACGTTTCAAAAAAGCCCATGTCAC...CAGCCTTACCTCATGTGCAGTCATCAAGCATTTACTAAGTTGTAAAGGAAAATA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000073456.9 |
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