RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NRTN (Mus musculus)

Ensembl gene IDs: ENSMUSG00000039481

Ensembl transcript IDs: ENSMUST00000044752.6

Found 18 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
CDS GCA 90 bp GCGCCCGCCGACGCCGGGGACCCGCTCGACGGCGCGGTCCCGGGATaGGGGCAGCCCAGGGAGAAAGTTCTCGAAGCTCCACCGCGTCGG +
Preference number: 5 (lower is better)
Translates to: APADAGDPLDGAVPG*GQPREKVLEAPPRR
Trigger: CCGACGCGGTGGAGCTTCGAGAACTTTCTCCCTGGGCTGCCCGCATCCCGGGACCGCGCCGTCGAGCGGGTCCCCGGCGTCGGCGGGCGC
77% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000044752.6
CDS GCA 90 bp CATAGGCCGTCGGGCGACAACACGGGTGCGCCCGCGCCCGCTCTCTaGGCACGCGCCTCCGCTGGCGCAGGCGCCGAAGGCCCAGGTCGT +
Preference number: 5 (lower is better)
Translates to: HRPSGDNTGAPAPAL*ARASAGAGAEGPGR
Trigger: ACGACCTGGGCCTTCGGCGCCTGCGCCAGCGGAGGCGCGTGCGCAGAGAGCGGGCGCGGGCGCACCCGTGTTGTCGCCCGACGGCCTATG
77% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044752.6
CDS GCA 90 bp GCAGAGCGCGATACTGGGCCAGGCGGGCGATGCGGGCGTCCAGGGTaGGTGGAGGGCGTCGTAGCGGGGCAAGCGCGGGTCCCAGGCGGT +
Preference number: 5 (lower is better)
Translates to: AERDTGPGGRCGRPG*VEGVVAGQARVPGG
Trigger: ACCGCCTGGGACCCGCGCTTGCCCCGCTACGACGCCCTCCACGCACCCTGGACGCCCGCATCGCCCGCCTGGCCCAGTATCGCGCTCTGC
76% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044752.6
CDS CCA 90 bp CGAAGCTCCACCGCGTCGGGGGCGCCCTGGAGCAGAGCGCGATACTaGGCCAGGCGGGCGATGCGGGCGTCCAGGGTGCGTGGAGGGCGT +
Preference number: 5 (lower is better)
Translates to: RSSTASGAPWSRARY*ARRAMRASRVRGGR
Trigger: ACGCCCTCCACGCACCCTGGACGCCCGCATCGCCCGCCTGGCCCAGTATCGCGCTCTGCTCCAGGGCGCCCCCGACGCGGTGGAGCTTCG
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044752.6
CDS GCA 90 bp GCACGCGCCTCCGCTGGCGCAGGCGCCGAAGGCCCAGGTCGTAGATaGGGATGGCCGCCTCGCACGCGCCTGCGCAGTAGCGGAACAGCA +
Preference number: 5 (lower is better)
Translates to: ARASAGAGAEGPGRR*GWPPRTRLRSSGTA
Trigger: TGCTGTTCCGCTACTGCGCAGGCGCGTGCGAGGCGGCCATCCGCATCTACGACCTGGGCCTTCGGCGCCTGCGCCAGCGGAGGCGCGTGC
73% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044752.6
CDS CCA 90 bp GCCCAGGGAGAAAGTTCTCGAAGCTCCACCGCGTCGGGGGCGCCCTaGAGCAGAGCGCGATACTGGGCCAGGCGGGCGATGCGGGCGTCC +
Preference number: 5 (lower is better)
Translates to: AQGESSRSSTASGAP*SRARYWARRAMRAS
Trigger: GGACGCCCGCATCGCCCGCCTGGCCCAGTATCGCGCTCTGCTCCAGGGCGCCCCCGACGCGGTGGAGCTTCGAGAACTTTCTCCCTGGGC
72% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044752.6
CDS CCA 90 bp GCCTCCGCTGGCGCAGGCGCCGAAGGCCCAGGTCGTAGATGCGGATaGCCGCCTCGCACGCGCCTGCGCAGTAGCGGAACAGCACGGTCT +
Preference number: 5 (lower is better)
Translates to: ASAGAGAEGPGRRCG*PPRTRLRSSGTARS
Trigger: AGACCGTGCTGTTCCGCTACTGCGCAGGCGCGTGCGAGGCGGCCATCCGCATCTACGACCTGGGCCTTCGGCGCCTGCGCCAGCGGAGGC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044752.6
CDS GCA 90 bp CCGAAGGCCCAGGTCGTAGATGCGGATGGCCGCCTCGCACGCGCCTaGGCAGTAGCGGAACAGCACGGTCTCATCCGACGTGTAGCCCAG +
Preference number: 5 (lower is better)
Translates to: PKAQVVDADGRLARA*AVAEQHGLIRRVAQ
Trigger: CTGGGCTACACGTCGGATGAGACCGTGCTGTTCCGCTACTGCGCAGGCGCGTGCGAGGCGGCCATCCGCATCTACGACCTGGGCCTTCGG
68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044752.6
CDS CCA 90 bp GGGGCAAGCGCGGGTCCCAGGCGGTGGCCCAAGAGCAGACCCTCCTaGCACATCCAGACAGATAGCAGGGAGCTGCAGATGAGCGACACC +
Preference number: 5 (lower is better)
Translates to: GASAGPRRWPKSRPS*HIQTDSRELQMSDT
Trigger: GGTGTCGCTCATCTGCAGCTCCCTGCTATCTGTCTGGATGTGCCAGGAGGGTCTGCTCTTGGGCCACCGCCTGGGACCCGCGCTTGCCCC
67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044752.6
CDS GCA 72 bp TCGGGCGACAACACGGGTGCGCCCGCGCCCGCTCTCTaGGCACGCGCCTCCGCTGGCGCAGGCGCCGAAGGC +
Preference number: 6 (lower is better)
Translates to: SGDNTGAPAPAL*ARASAGAGAEG
Trigger: GCCTTCGGCGCCTGCGCCAGCGGAGGCGCGTGCGCAGAGAGCGGGCGCGGGCGCACCCGTGTTGTCGCCCGA
79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044752.6
CDS CCA 72 bp ACCGCGTCGGGGGCGCCCTGGAGCAGAGCGCGATACTaGGCCAGGCGGGCGATGCGGGCGTCCAGGGTGCGT +
Preference number: 6 (lower is better)
Translates to: TASGAPWSRARY*ARRAMRASRVR
Trigger: ACGCACCCTGGACGCCCGCATCGCCCGCCTGGCCCAGTATCGCGCTCTGCTCCAGGGCGCCCCCGACGCGGT
76% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000044752.6
CDS GCA 72 bp GATACTGGGCCAGGCGGGCGATGCGGGCGTCCAGGGTaGGTGGAGGGCGTCGTAGCGGGGCAAGCGCGGGTC +
Preference number: 6 (lower is better)
Translates to: DTGPGGRCGRPG*VEGVVAGQARV
Trigger: GACCCGCGCTTGCCCCGCTACGACGCCCTCCACGCACCCTGGACGCCCGCATCGCCCGCCTGGCCCAGTATC
75% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044752.6
CDS GCA 72 bp CCTGGAGCAGAGCGCGATACTGGGCCAGGCGGGCGATaGGGGCGTCCAGGGTGCGTGGAGGGCGTCGTAGCG +
Preference number: 6 (lower is better)
Translates to: PGAERDTGPGGR*GRPGCVEGVVA
Trigger: CGCTACGACGCCCTCCACGCACCCTGGACGCCCGCATCGCCCGCCTGGCCCAGTATCGCGCTCTGCTCCAGG
74% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044752.6
CDS CCA 72 bp GGCGCAGGCGCCGAAGGCCCAGGTCGTAGATGCGGATaGCCGCCTCGCACGCGCCTGCGCAGTAGCGGAACA +
Preference number: 6 (lower is better)
Translates to: GAGAEGPGRRCG*PPRTRLRSSGT
Trigger: TGTTCCGCTACTGCGCAGGCGCGTGCGAGGCGGCCATCCGCATCTACGACCTGGGCCTTCGGCGCCTGCGCC
72% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044752.6
CDS CCA 72 bp GGGCGTCGTAGCGGGGCAAGCGCGGGTCCCAGGCGGTaGCCCAAGAGCAGACCCTCCTGGCACATCCAGACA +
Preference number: 6 (lower is better)
Translates to: GRRSGASAGPRR*PKSRPSWHIQT
Trigger: TGTCTGGATGTGCCAGGAGGGTCTGCTCTTGGGCCACCGCCTGGGACCCGCGCTTGCCCCGCTACGACGCCC
71% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000044752.6
CDS GCA 72 bp CAGGTCGTAGATGCGGATGGCCGCCTCGCACGCGCCTaGGCAGTAGCGGAACAGCACGGTCTCATCCGACGT +
Preference number: 6 (lower is better)
Translates to: QVVDADGRLARA*AVAEQHGLIRR
Trigger: ACGTCGGATGAGACCGTGCTGTTCCGCTACTGCGCAGGCGCGTGCGAGGCGGCCATCCGCATCTACGACCTG
67% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044752.6
CDS CCA 72 bp GCGGGTCCCAGGCGGTGGCCCAAGAGCAGACCCTCCTaGCACATCCAGACAGATAGCAGGGAGCTGCAGATG +
Preference number: 6 (lower is better)
Translates to: AGPRRWPKSRPS*HIQTDSRELQM
Trigger: CATCTGCAGCTCCCTGCTATCTGTCTGGATGTGCCAGGAGGGTCTGCTCTTGGGCCACCGCCTGGGACCCGC
65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044752.6
CDS TCA 72 bp CCTGGCACATCCAGACAGATAGCAGGGAGCTGCAGATaGGCGACACCAGGGCCGCTGCCTTCCAGCGCCTCA +
Preference number: 6 (lower is better)
Translates to: PGTSRQIAGSCR*ATPGPLPSSAS
Trigger: TGAGGCGCTGGAAGGCAGCGGCCCTGGTGTCGCTCATCTGCAGCTCCCTGCTATCTGTCTGGATGTGCCAGG
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000044752.6