Pregenerated sensors for NRSN2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000059361Ensembl transcript IDs: ENSMUST00000079278.5
Found 44 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | GGTGGGAAGTGCCTGAACCCTCTTCCTCCCACCCAGGAAGCCCCGTaGGCTTGCAAGGGGTTGCCAGAGACAGGATCCGACGCTGTCCTA | + |
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Preference number: 1 (lower is better) Translates to: GGKCLNPLPPTQEAP*ACKGLPETGSDAVL Trigger: TAGGACAGCGTCGGATCCTGTCTCTGGCAACCCCTTGCAAGCCCACGGGGCTTCCTGGGTGGGAGGAAGAGGGTTCAGGCACTTCCCACC 63% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| 3UTR TCA 90 bp | CTGGAAAGTACAACCAGAGGGGGCACAAAGGTGGTGGGAAGTGCCTaGACCCTCTTCCTCCCACCCAGGAAGCCCCGTGGGCTTGCAAGG | + |
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Preference number: 1 (lower is better) Translates to: LESTTRGGTKVVGSA*TLFLPPRKPRGLAR Trigger: CCTTGCAAGCCCACGGGGCTTCCTGGGTGGGAGGAAGAGGGTTCAGGCACTTCCCACCACCTTTGTGCCCCCTCTGGTTGTACTTTCCAG 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| 3UTR CCA 90 bp | GAAGCAGGGACCTGGAAAGTACAACCAGAGGGGGCACAAAGGTGGTaGGAAGTGCCTGAACCCTCTTCCTCCCACCCAGGAAGCCCCGTG | + |
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Preference number: 1 (lower is better) Translates to: EAGTWKVQPEGAQRW*EVPEPSSSHPGSPV Trigger: CACGGGGCTTCCTGGGTGGGAGGAAGAGGGTTCAGGCACTTCCCACCACCTTTGTGCCCCCTCTGGTTGTACTTTCCAGGTCCCTGCTTC 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| 3UTR CAA 90 bp | AACCCTCTTCCTCCCACCCAGGAAGCCCCGTGGGCTTGCAAGGGGTaGCCAGAGACAGGATCCGACGCTGTCCTAGAGCGCCCTCTAGCG | + |
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Preference number: 2 (lower is better) Translates to: NPLPPTQEAPWACKG*PETGSDAVLERPLA Trigger: CGCTAGAGGGCGCTCTAGGACAGCGTCGGATCCTGTCTCTGGCAACCCCTTGCAAGCCCACGGGGCTTCCTGGGTGGGAGGAAGAGGGTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| 3UTR-3UTR TCA 90 bp | CCTGGGCCTTCCTGGGCCGTTTCTGAGCCCTCTCTGGGTCGTTTCACGAGTCTGCAGGCGGGAAGGGTCTaGCTTCTCCAGCCTGCAGAC | + |
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Preference number: 2 (lower is better) Translates to: PGPSWAVSEPSLGRFTSLQAGRV*LLQPAD Trigger: GTCTGCAGGCTGGAGAAGTCAGACCCTTCCCGCCTG...CAGACTCGTGAAACGACCCAGAGAGGGCTCAGAAACGGCCCAGGAAGGCCCAGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| 3UTR-3UTR TCA 90 bp | GTGAGAAGCAGGGACCTGGAAAGTACAACCAGAGGGGGCACAAAGGTGGTGGGATTCCTGGGCCGTTTCTaGGCCCTCTCTGGGTCGTTT | + |
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Preference number: 2 (lower is better) Translates to: VRSRDLESTTRGGTKVVGFLGRF*ALSGSF Trigger: AAACGACCCAGAGAGGGCTCAGAAACGGCCCAGGAA...TCCCACCACCTTTGTGCCCCCTCTGGTTGTACTTTCCAGGTCCCTGCTTCTCAC 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| 3UTR-3UTR GCA 90 bp | AGGGGGCACAAAGGTGGTGGGAAGTGCCTGAACCCTCTTCCTCCCACCCAGGAAAAGTCCAGAGGGCATTaGTGTCTAGGGGGTGGACTT | + |
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Preference number: 2 (lower is better) Translates to: RGHKGGGKCLNPLPPTQEKSRGH*CLGGGL Trigger: AAGTCCACCCCCTAGACAGCAATGCCCTCTGGACTT...TTCCTGGGTGGGAGGAAGAGGGTTCAGGCACTTCCCACCACCTTTGTGCCCCCT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| 3UTR-3UTR CCA 90 bp | GTGAGAAGCAGGGACCTGGAAAGTACAACCAGAGGGGGCACAAAGGTGGTGGGAGCATGGGACTTGATTTaGGGGGAGTGGGGAGCTATA | + |
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Preference number: 2 (lower is better) Translates to: VRSRDLESTTRGGTKVVGAWDLI*GEWGAI Trigger: TATAGCTCCCCACTCCCCCCAAATCAAGTCCCATGC...TCCCACCACCTTTGTGCCCCCTCTGGTTGTACTTTCCAGGTCCCTGCTTCTCAC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| 3UTR-3UTR CCA 90 bp | AACTGTGGGGAGCCAGTTCTCCTCTTCCACCTTGTAGGTGTGAGAGATAAAACTGGCCCTGGGCCTTCCTaGGCCGTTTCTGAGCCCTCT | + |
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Preference number: 2 (lower is better) Translates to: NCGEPVLLFHLVGVRDKTGPGPS*AVSEPS Trigger: AGAGGGCTCAGAAACGGCCCAGGAAGGCCCAGGGCC...AGTTTTATCTCTCACACCTACAAGGTGGAAGAGGAGAACTGGCTCCCCACAGTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| 3UTR-3UTR TCA 90 bp | AACTGTGGGGAGCCAGTTCTCCTCTTCCACCTTGTAGGTGTGAGAGATAAAACTAGAGATTGGCACTACTaGGAGGAAGAAGTCAAGGTG | + |
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Preference number: 2 (lower is better) Translates to: NCGEPVLLFHLVGVRDKTRDWHY*EEEVKV Trigger: CACCTTGACTTCTTCCTCTCAGTAGTGCCAATCTCT...AGTTTTATCTCTCACACCTACAAGGTGGAAGAGGAGAACTGGCTCCCCACAGTT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| 3UTR TCA 72 bp | ACAACCAGAGGGGGCACAAAGGTGGTGGGAAGTGCCTaGACCCTCTTCCTCCCACCCAGGAAGCCCCGTGGG | + |
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Preference number: 3 (lower is better) Translates to: TTRGGTKVVGSA*TLFLPPRKPRG Trigger: CCCACGGGGCTTCCTGGGTGGGAGGAAGAGGGTTCAGGCACTTCCCACCACCTTTGTGCCCCCTCTGGTTGT 64% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| 3UTR GCA 72 bp | AACCCTCTTCCTCCCACCCAGGAAGCCCCGTGGGCTTaGAAGGGGTTGCCAGAGACAGGATCCGACGCTGTC | + |
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Preference number: 3 (lower is better) Translates to: NPLPPTQEAPWA*KGLPETGSDAV Trigger: GACAGCGTCGGATCCTGTCTCTGGCAACCCCTTGCAAGCCCACGGGGCTTCCTGGGTGGGAGGAAGAGGGTT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| 3UTR CCA 72 bp | GATCGTCAATCACGCCAGGAAGGCCCTGGGCCTTCCTaGGCCGTTTCTGAGCCCTCTCTGGGTCGTTTCACG | + |
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Preference number: 3 (lower is better) Translates to: DRQSRQEGPGPS*AVSEPSLGRFT Trigger: CGTGAAACGACCCAGAGAGGGCTCAGAAACGGCCCAGGAAGGCCCAGGGCCTTCCTGGCGTGATTGACGATC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| 3UTR-3UTR CAA 90 bp | AGGGGGCACAAAGGTGGTGGGAAGTGCCTGAACCCTCTTCCTCCCACCCAGGAATGGGCTTGCAAGGGGTaGCCAGAGACAGGATCCGAC | + |
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Preference number: 3 (lower is better) Translates to: RGHKGGGKCLNPLPPTQEWACKG*PETGSD Trigger: GTCGGATCCTGTCTCTGGCAACCCCTTGCAAGCCCA...TTCCTGGGTGGGAGGAAGAGGGTTCAGGCACTTCCCACCACCTTTGTGCCCCCT 61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| 3UTR CCA 72 bp | ACCTGGAAAGTACAACCAGAGGGGGCACAAAGGTGGTaGGAAGTGCCTGAACCCTCTTCCTCCCACCCAGGA | + |
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Preference number: 3 (lower is better) Translates to: TWKVQPEGAQRW*EVPEPSSSHPG Trigger: TCCTGGGTGGGAGGAAGAGGGTTCAGGCACTTCCCACCACCTTTGTGCCCCCTCTGGTTGTACTTTCCAGGT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| 3UTR-3UTR CAA 90 bp | AGGGGACAACTGTGGGGAGCCAGTTCTCCTCTTCCACCTTGTAGGTGTGAGAGAAGTTCTTGGTTGAGTTaGCTCCTATCCTGGACAGGG | + |
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Preference number: 3 (lower is better) Translates to: RGQLWGASSPLPPCRCERSSWLS*LLSWTG Trigger: CCCTGTCCAGGATAGGAGCAAACTCAACCAAGAACT...TCTCTCACACCTACAAGGTGGAAGAGGAGAACTGGCTCCCCACAGTTGTCCCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| 3UTR TCA 72 bp | CCGTTTCTGAGCCCTCTCTGGGTCGTTTCACGAGTCTaGATGAGCAGTTCTTGGTTGAGTTTGCTCCTATCC | + |
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Preference number: 3 (lower is better) Translates to: PFLSPLWVVSRV*MSSSWLSLLLS Trigger: GGATAGGAGCAAACTCAACCAAGAACTGCTCATTCAGACTCGTGAAACGACCCAGAGAGGGCTCAGAAACGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| 3UTR CAA 72 bp | CCTCCCACCCAGGAAGCCCCGTGGGCTTGCAAGGGGTaGCCAGAGACAGGATCCGACGCTGTCCTAGAGCGC | + |
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Preference number: 4 (lower is better) Translates to: PPTQEAPWACKG*PETGSDAVLER Trigger: GCGCTCTAGGACAGCGTCGGATCCTGTCTCTGGCAACCCCTTGCAAGCCCACGGGGCTTCCTGGGTGGGAGG 67% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| 3UTR CAA 72 bp | GAACCCTCTTCCTCCCACCCAGGAAGCCCCGTGGGCTaGCAAGGGGTTGCCAGAGACAGGATCCGACGCTGT | + |
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Preference number: 4 (lower is better) Translates to: EPSSSHPGSPVG*QGVARDRIRRC Trigger: ACAGCGTCGGATCCTGTCTCTGGCAACCCCTTGCAAGCCCACGGGGCTTCCTGGGTGGGAGGAAGAGGGTTC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| CDS-3UTR CCA 90 bp | CTGAGAGGAAGAAGTCAAGGTGATGAAAGCAAGGAGTGCCAGGCGGGAAGGGTCCCCGCTGGGGCTGGCTaGTCTGCACAGACTGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: LRGRSQGDESKECQAGRVPAGAG*SAQTAA Trigger: GGCAGCAGTCTGTGCAGACCAGCCAGCCCCAGCGGG...GACCCTTCCCGCCTGGCACTCCTTGCTTTCATCACCTTGACTTCTTCCTCTCAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| CDS-3UTR CCA 90 bp | CCTGGGCCTTCCTGGGCCGTTTCTGAGCCCTCTCTGGGTCGTTTCACGAGTCTGGGTTATAGGGGAGAGTaGTGGTGCCCAGCCAGTCAT | + |
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Preference number: 4 (lower is better) Translates to: PGPSWAVSEPSLGRFTSLGYRGE*WCPASH Trigger: ATGACTGGCTGGGCACCACCACTCTCCCCTATAACC...CAGACTCGTGAAACGACCCAGAGAGGGCTCAGAAACGGCCCAGGAAGGCCCAGG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| CDS-3UTR TCA 90 bp | AGGGGACAACTGTGGGGAGCCAGTTCTCCTCTTCCACCTTGTAGGTGTGAGAGATCCACACTGGTGCCATaGCTACAGACACAGGGGCGA | + |
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Preference number: 4 (lower is better) Translates to: RGQLWGASSPLPPCRCERSTLVP*LQTQGR Trigger: TCGCCCCTGTGTCTGTAGTCATGGCACCAGTGTGGA...TCTCTCACACCTACAAGGTGGAAGAGGAGAACTGGCTCCCCACAGTTGTCCCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| CDS-3UTR TCA 90 bp | CTGAGAGGAAGAAGTCAAGGTGATGAAAGCAAGGAGTGCCAGGCGGGAAGGGTCGACCTTCCAACACAGTaGGGGCCAGGGTCGGTTGAT | + |
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Preference number: 4 (lower is better) Translates to: LRGRSQGDESKECQAGRVDLPTQ*GPGSVD Trigger: ATCAACCGACCCTGGCCCTCACTGTGTTGGAAGGTC...GACCCTTCCCGCCTGGCACTCCTTGCTTTCATCACCTTGACTTCTTCCTCTCAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| CDS-3UTR CCA 90 bp | AGGGGACAACTGTGGGGAGCCAGTTCTCCTCTTCCACCTTGTAGGTGTGAGAGAGCACTGCATAGCCAGTaGTCAAGGCTGCCACACCCA | + |
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Preference number: 4 (lower is better) Translates to: RGQLWGASSPLPPCRCERALHSQ*SRLPHP Trigger: TGGGTGTGGCAGCCTTGACCACTGGCTATGCAGTGC...TCTCTCACACCTACAAGGTGGAAGAGGAGAACTGGCTCCCCACAGTTGTCCCCT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| CDS-3UTR GCA 90 bp | GAAGAAGTCAAGGTGATGAAAGCAAGGAGTGCCAGGCGGGAAGGGTCTGACTTCTGGGGCTGGCTGGTCTaGACAGACTGCTGCCCAAAA | + |
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Preference number: 4 (lower is better) Translates to: EEVKVMKARSARREGSDFWGWLV*TDCCPK Trigger: TTTTGGGCAGCAGTCTGTGCAGACCAGCCAGCCCCA...GAAGTCAGACCCTTCCCGCCTGGCACTCCTTGCTTTCATCACCTTGACTTCTTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| CDS-3UTR GCA 90 bp | CTCCTCTTCCACCTTGTAGGTGTGAGAGATAAAACTCAGATCGTCAATCACGCCCTGGTCTGCACAGACTaGTGCCCAAAAGGGCTGGGC | + |
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Preference number: 4 (lower is better) Translates to: LLFHLVGVRDKTQIVNHALVCTD*CPKGLG Trigger: GCCCAGCCCTTTTGGGCAGCAGTCTGTGCAGACCAG...GGCGTGATTGACGATCTGAGTTTTATCTCTCACACCTACAAGGTGGAAGAGGAG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| CDS-3UTR CCA 90 bp | GAAGAAGTCAAGGTGATGAAAGCAAGGAGTGCCAGGCGGGAAGGGTCTGACTTCTCTGCCTTGATGTCCTaGAACATCCAACCAGAGGCG | + |
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Preference number: 4 (lower is better) Translates to: EEVKVMKARSARREGSDFSALMS*NIQPEA Trigger: CGCCTCTGGTTGGATGTTCCAGGACATCAAGGCAGA...GAAGTCAGACCCTTCCCGCCTGGCACTCCTTGCTTTCATCACCTTGACTTCTTC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| CDS-3UTR TCA 90 bp | AGGGGGCACAAAGGTGGTGGGAAGTGCCTGAACCCTCTTCCTCCCACCCAGGAATGGATCCTCCATCGATaGGAACTTACTTTCATTAAC | + |
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Preference number: 4 (lower is better) Translates to: RGHKGGGKCLNPLPPTQEWILHR*ELTFIN Trigger: GTTAATGAAAGTAAGTTCTCATCGATGGAGGATCCA...TTCCTGGGTGGGAGGAAGAGGGTTCAGGCACTTCCCACCACCTTTGTGCCCCCT 52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| CDS-3UTR TCA 90 bp | AACTGTGGGGAGCCAGTTCTCCTCTTCCACCTTGTAGGTGTGAGAGATAAAACTCGAGGGGCTCTGCCTTaGTGTCCTGGAACATCCAAC | + |
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Preference number: 4 (lower is better) Translates to: NCGEPVLLFHLVGVRDKTRGALP*CPGTSN Trigger: GTTGGATGTTCCAGGACATCAAGGCAGAGCCCCTCG...AGTTTTATCTCTCACACCTACAAGGTGGAAGAGGAGAACTGGCTCCCCACAGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| CDS-3UTR GCA 90 bp | AACTGTGGGGAGCCAGTTCTCCTCTTCCACCTTGTAGGTGTGAGAGATAAAACTGCCAGTGGTCAAGGCTaGCACACCCAGCAGGAGAAA | + |
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Preference number: 4 (lower is better) Translates to: NCGEPVLLFHLVGVRDKTASGQG*HTQQEK Trigger: TTTCTCCTGCTGGGTGTGGCAGCCTTGACCACTGGC...AGTTTTATCTCTCACACCTACAAGGTGGAAGAGGAGAACTGGCTCCCCACAGTT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| CDS-3UTR CCA 90 bp | CTGAGAGGAAGAAGTCAAGGTGATGAAAGCAAGGAGTGCCAGGCGGGAAGGGTCTACTTTCCTCCACACTaGTGCCATGACTACAGACAC | + |
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Preference number: 4 (lower is better) Translates to: LRGRSQGDESKECQAGRVYFPPH*CHDYRH Trigger: GTGTCTGTAGTCATGGCACCAGTGTGGAGGAAAGTA...GACCCTTCCCGCCTGGCACTCCTTGCTTTCATCACCTTGACTTCTTCCTCTCAG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| CDS-3UTR CCA 90 bp | AACTGTGGGGAGCCAGTTCTCCTCTTCCACCTTGTAGGTGTGAGAGATAAAACTTATAGGGGAGAGTGGTaGTGCCCAGCCAGTCATTGT | + |
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Preference number: 4 (lower is better) Translates to: NCGEPVLLFHLVGVRDKTYRGEW*CPASHC Trigger: ACAATGACTGGCTGGGCACCACCACTCTCCCCTATA...AGTTTTATCTCTCACACCTACAAGGTGGAAGAGGAGAACTGGCTCCCCACAGTT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| CDS TCA 90 bp | GGAACATCCAACCAGAGGCGATCAAGAAGAGGCAGACAGCCAGCATaGTCCCCGCTACTCCGCACAGCGTCGCTCCTACCACACGGCAGG | + |
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Preference number: 5 (lower is better) Translates to: GTSNQRRSRRGRQPA*SPLLRTASLLPHGR Trigger: CCTGCCGTGTGGTAGGAGCGACGCTGTGCGGAGTAGCGGGGATCATGCTGGCTGTCTGCCTCTTCTTGATCGCCTCTGGTTGGATGTTCC 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| CDS TCA 90 bp | CAGGAGAAACAGAGAGGCCACGGCCACGGTGACCTTCCAACACAGTaGGGGCCAGGGTCGGTTGATATACCGAATGGGGATTCTCTCTGG | + |
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Preference number: 5 (lower is better) Translates to: QEKQRGHGHGDLPTQ*GPGSVDIPNGDSLW Trigger: CCAGAGAGAATCCCCATTCGGTATATCAACCGACCCTGGCCCTCACTGTGTTGGAAGGTCACCGTGGCCGTGGCCTCTCTGTTTCTCCTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| CDS CCA 90 bp | ACGGGGCTGTCAGTTTCAGTGACGAGGGGCTCTGCCTTGATGTCCTaGAACATCCAACCAGAGGCGATCAAGAAGAGGCAGACAGCCAGC | + |
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Preference number: 5 (lower is better) Translates to: TGLSVSVTRGSALMS*NIQPEAIKKRQTAS Trigger: GCTGGCTGTCTGCCTCTTCTTGATCGCCTCTGGTTGGATGTTCCAGGACATCAAGGCAGAGCCCCTCGTCACTGAAACTGACAGCCCCGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| CDS CCA 72 bp | GCTGGCTGGTCTGCACAGACTGCTGCCCAAAAGGGCTaGGCGGGGTCAAGAACGGCGACTGACTACTGGTCT | + |
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Preference number: 6 (lower is better) Translates to: AGWSAQTAAQKG*AGSRTATDYWS Trigger: AGACCAGTAGTCAGTCGCCGTTCTTGACCCCGCCCAGCCCTTTTGGGCAGCAGTCTGTGCAGACCAGCCAGC 62% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| CDS TCA 72 bp | CAGAGAGGCCACGGCCACGGTGACCTTCCAACACAGTaGGGGCCAGGGTCGGTTGATATACCGAATGGGGAT | + |
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Preference number: 6 (lower is better) Translates to: QRGHGHGDLPTQ*GPGSVDIPNGD Trigger: ATCCCCATTCGGTATATCAACCGACCCTGGCCCTCACTGTGTTGGAAGGTCACCGTGGCCGTGGCCTCTCTG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| CDS TCA 72 bp | AACCAGAGGCGATCAAGAAGAGGCAGACAGCCAGCATaGTCCCCGCTACTCCGCACAGCGTCGCTCCTACCA | + |
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Preference number: 6 (lower is better) Translates to: NQRRSRRGRQPA*SPLLRTASLLP Trigger: TGGTAGGAGCGACGCTGTGCGGAGTAGCGGGGATCATGCTGGCTGTCTGCCTCTTCTTGATCGCCTCTGGTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| CDS CCA 72 bp | CCAGGGTCGGTTGATATACCGAATGGGGATTCTCTCTaGGTTATAGGGGAGAGTGGTGGTGCCCAGCCAGTC | + |
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Preference number: 6 (lower is better) Translates to: PGSVDIPNGDSL*VIGESGGAQPV Trigger: GACTGGCTGGGCACCACCACTCTCCCCTATAACCCAGAGAGAATCCCCATTCGGTATATCAACCGACCCTGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| CDS CAA 72 bp | ACGGGGCTGTCAGTTTCAGTGACGAGGGGCTCTGCCTaGATGTCCTGGAACATCCAACCAGAGGCGATCAAG | + |
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Preference number: 6 (lower is better) Translates to: TGLSVSVTRGSA*MSWNIQPEAIK Trigger: CTTGATCGCCTCTGGTTGGATGTTCCAGGACATCAAGGCAGAGCCCCTCGTCACTGAAACTGACAGCCCCGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| CDS CAA 90 bp | AATACTTCCACGGGGCTGTCAGTTTCAGTGACGAGGGGCTCTGCCTaGATGTCCTGGAACATCCAACCAGAGGCGATCAAGAAGAGGCAG | + |
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Preference number: 6 (lower is better) Translates to: NTSTGLSVSVTRGSA*MSWNIQPEAIKKRQ Trigger: CTGCCTCTTCTTGATCGCCTCTGGTTGGATGTTCCAGGACATCAAGGCAGAGCCCCTCGTCACTGAAACTGACAGCCCCGTGGAAGTATT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| CDS CCA 72 bp | TCAGTTTCAGTGACGAGGGGCTCTGCCTTGATGTCCTaGAACATCCAACCAGAGGCGATCAAGAAGAGGCAG | + |
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Preference number: 6 (lower is better) Translates to: SVSVTRGSALMS*NIQPEAIKKRQ Trigger: CTGCCTCTTCTTGATCGCCTCTGGTTGGATGTTCCAGGACATCAAGGCAGAGCCCCTCGTCACTGAAACTGA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| CDS GCA 72 bp | AGTCAAACCCATACCATGTACTTTCCTCCACACTGGTaGCATGACTACAGACACAGGGGCGACTGCAGCTCA | + |
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Preference number: 6 (lower is better) Translates to: SQTHTMYFPPHW*HDYRHRGDCSS Trigger: TGAGCTGCAGTCGCCCCTGTGTCTGTAGTCATGGCACCAGTGTGGAGGAAAGTACATGGTATGGGTTTGACT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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| CDS CCA 72 bp | AGAAGTCAAACCCATACCATGTACTTTCCTCCACACTaGTGCCATGACTACAGACACAGGGGCGACTGCAGC | + |
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Preference number: 6 (lower is better) Translates to: RSQTHTMYFPPH*CHDYRHRGDCS Trigger: GCTGCAGTCGCCCCTGTGTCTGTAGTCATGGCACCAGTGTGGAGGAAAGTACATGGTATGGGTTTGACTTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000079278.5 |
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