Pregenerated sensors for NRN1L (Mus musculus)
Ensembl gene IDs: ENSMUSG00000044287Ensembl transcript IDs: ENSMUST00000060167.6, ENSMUST00000118920.2
Found 21 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 72 bp | ATACTGCAGAGCTCACATGGCAGCCACTGCATGCAGTaGTGGGAGGCAAGGGCACTGTTGGCTGGCCAACCA | + |
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Preference number: 3 (lower is better) Translates to: ILQSSHGSHCMQ*WEARALLAGQP Trigger: TGGTTGGCCAGCCAACAGTGCCCTTGCCTCCCATCACTGCATGCAGTGGCTGCCATGTGAGCTCTGCAGTAT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060167.6 ENSMUST00000118920.2 |
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| 3UTR-3UTR CAA 90 bp | AATGAAAAGTGTGCATACTGCAGAGCTCACATGGCAGCCACTGCATGCAGTGATGAGGCAAGGGCACTGTaGGCTGGCCAACCAGACTGT | + |
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Preference number: 3 (lower is better) Translates to: NEKCAYCRAHMAATACSDEARAL*AGQPDC Trigger: ACAGTCTGGTTGGCCAGCCAACAGTGCCCTTGCCTC...ATCACTGCATGCAGTGGCTGCCATGTGAGCTCTGCAGTATGCACACTTTTCATT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060167.6 ENSMUST00000118920.2 |
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| CDS-3UTR CCA 90 bp | AAGTGTGCATACTGCAGAGCTCACATGGCAGCCACTGCATGCAGTGATGGGAGGGAGCAACACAGGGGCTaGAGCTGGAGCCAGTGCAGG | + |
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Preference number: 4 (lower is better) Translates to: KCAYCRAHMAATACSDGREQHRG*SWSQCR Trigger: CCTGCACTGGCTCCAGCTCCAGCCCCTGTGTTGCTC...CCTCCCATCACTGCATGCAGTGGCTGCCATGTGAGCTCTGCAGTATGCACACTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060167.6 ENSMUST00000118920.2 |
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| CDS-3UTR GCA 90 bp | AAGTGTGCATACTGCAGAGCTCACATGGCAGCCACTGCATGCAGTGATGGGAGGGCGCGGCGAGCTTCTTaGTGCAGTGACTCCCACACT | + |
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Preference number: 4 (lower is better) Translates to: KCAYCRAHMAATACSDGRARRAS*CSDSHT Trigger: AGTGTGGGAGTCACTGCAGCAAGAAGCTCGCCGCGC...CCTCCCATCACTGCATGCAGTGGCTGCCATGTGAGCTCTGCAGTATGCACACTT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060167.6 ENSMUST00000118920.2 |
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| CDS-3UTR CCA 90 bp | TGTGCATACTGCAGAGCTCACATGGCAGCCACTGCATGCAGTGATGGGAGGCAACCAGTGCAGGAGCTGTaGCCCGTAGTGTCTCCTGGT | + |
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Preference number: 4 (lower is better) Translates to: CAYCRAHMAATACSDGRQPVQEL*PVVSPG Trigger: ACCAGGAGACACTACGGGCCACAGCTCCTGCACTGG...TTGCCTCCCATCACTGCATGCAGTGGCTGCCATGTGAGCTCTGCAGTATGCACA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060167.6 ENSMUST00000118920.2 |
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| CDS-3UTR GCA 90 bp | AAGTGTGCATACTGCAGAGCTCACATGGCAGCCACTGCATGCAGTGATGGGAGGCGGCGAGCTTCTTGCTaGAGTGACTCCCACACTGCA | + |
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Preference number: 4 (lower is better) Translates to: KCAYCRAHMAATACSDGRRRASC*SDSHTA Trigger: TGCAGTGTGGGAGTCACTGCAGCAAGAAGCTCGCCG...CCTCCCATCACTGCATGCAGTGGCTGCCATGTGAGCTCTGCAGTATGCACACTT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060167.6 ENSMUST00000118920.2 |
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| CDS-3UTR TCA 90 bp | AAAAGTGTGCATACTGCAGAGCTCACATGGCAGCCACTGCATGCAGTGATGGGAAGCTTCTTGCTGCAGTaGCTCCCACACTGCAGCCGC | + |
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Preference number: 4 (lower is better) Translates to: KSVHTAELTWQPLHAVMGSFLLQ*LPHCSR Trigger: GCGGCTGCAGTGTGGGAGTCACTGCAGCAAGAAGCT...TCCCATCACTGCATGCAGTGGCTGCCATGTGAGCTCTGCAGTATGCACACTTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060167.6 ENSMUST00000118920.2 |
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| CDS-3UTR GCA 90 bp | AAAAGTGTGCATACTGCAGAGCTCACATGGCAGCCACTGCATGCAGTGATGGGAGCGCGGCGAGCTTCTTaGTGCAGTGACTCCCACACT | + |
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Preference number: 4 (lower is better) Translates to: KSVHTAELTWQPLHAVMGARRAS*CSDSHT Trigger: AGTGTGGGAGTCACTGCAGCAAGAAGCTCGCCGCGC...TCCCATCACTGCATGCAGTGGCTGCCATGTGAGCTCTGCAGTATGCACACTTTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060167.6 ENSMUST00000118920.2 |
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| CDS-3UTR CCA 90 bp | AATGAAAAGTGTGCATACTGCAGAGCTCACATGGCAGCCACTGCATGCAGTGATGAGCAACACAGGGGCTaGAGCTGGAGCCAGTGCAGG | + |
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Preference number: 4 (lower is better) Translates to: NEKCAYCRAHMAATACSDEQHRG*SWSQCR Trigger: CCTGCACTGGCTCCAGCTCCAGCCCCTGTGTTGCTC...ATCACTGCATGCAGTGGCTGCCATGTGAGCTCTGCAGTATGCACACTTTTCATT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000060167.6 ENSMUST00000118920.2 |
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| CDS-3UTR GCA 90 bp | ATGAAAAGTGTGCATACTGCAGAGCTCACATGGCAGCCACTGCATGCAGTGATGCGGCGAGCTTCTTGCTaGAGTGACTCCCACACTGCA | + |
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Preference number: 4 (lower is better) Translates to: MKSVHTAELTWQPLHAVMRRASC*SDSHTA Trigger: TGCAGTGTGGGAGTCACTGCAGCAAGAAGCTCGCCG...CATCACTGCATGCAGTGGCTGCCATGTGAGCTCTGCAGTATGCACACTTTTCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060167.6 ENSMUST00000118920.2 |
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| CDS-3UTR CCA 90 bp | ATAAATACCTTTAATGAAAAGTGTGCATACTGCAGAGCTCACATGGCAGCCACTCAGCGGCGGCGCCAGTaGCAGTGGCAGCAGTTGCAC | + |
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Preference number: 4 (lower is better) Translates to: INTFNEKCAYCRAHMAATQRRRQ*QWQQLH Trigger: GTGCAACTGCTGCCACTGCCACTGGCGCCGCCGCTG...AGTGGCTGCCATGTGAGCTCTGCAGTATGCACACTTTTCATTAAAGGTATTTAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060167.6 ENSMUST00000118920.2 |
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| CDS-3UTR CCA 90 bp | ATGAAAAGTGTGCATACTGCAGAGCTCACATGGCAGCCACTGCATGCAGTGATGCGAGAGGCACAGGCGTaGAAGTCATTCCAGGATCTG | + |
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Preference number: 4 (lower is better) Translates to: MKSVHTAELTWQPLHAVMREAQA*KSFQDL Trigger: CAGATCCTGGAATGACTTCCACGCCTGTGCCTCTCG...CATCACTGCATGCAGTGGCTGCCATGTGAGCTCTGCAGTATGCACACTTTTCAT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060167.6 ENSMUST00000118920.2 |
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| CDS-3UTR CCA 90 bp | AATGAAAAGTGTGCATACTGCAGAGCTCACATGGCAGCCACTGCATGCAGTGATCGAGAGGCACAGGCGTaGAAGTCATTCCAGGATCTG | + |
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Preference number: 4 (lower is better) Translates to: NEKCAYCRAHMAATACSDREAQA*KSFQDL Trigger: CAGATCCTGGAATGACTTCCACGCCTGTGCCTCTCG...ATCACTGCATGCAGTGGCTGCCATGTGAGCTCTGCAGTATGCACACTTTTCATT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060167.6 ENSMUST00000118920.2 |
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| CDS-3UTR TCA 90 bp | ATAAATACCTTTAATGAAAAGTGTGCATACTGCAGAGCTCACATGGCAGCCACTAGCTTCTTGCTGCAGTaGCTCCCACACTGCAGCCGC | + |
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Preference number: 4 (lower is better) Translates to: INTFNEKCAYCRAHMAATSFLLQ*LPHCSR Trigger: GCGGCTGCAGTGTGGGAGTCACTGCAGCAAGAAGCT...AGTGGCTGCCATGTGAGCTCTGCAGTATGCACACTTTTCATTAAAGGTATTTAT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060167.6 ENSMUST00000118920.2 |
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| CDS-3UTR CCA 90 bp | AATATAAATACCTTTAATGAAAAGTGTGCATACTGCAGAGCTCACATGGCAGCCCATTCAGCAAAGCCTTaGTATATGGTATCACAGCGG | + |
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Preference number: 4 (lower is better) Translates to: NINTFNEKCAYCRAHMAAHSAKP*YMVSQR Trigger: CCGCTGTGATACCATATACCAAGGCTTTGCTGAATG...GGCTGCCATGTGAGCTCTGCAGTATGCACACTTTTCATTAAAGGTATTTATATT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060167.6 ENSMUST00000118920.2 |
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| CDS CCA 90 bp | CGACCCATGCCATCCCCCAGGCGGATGAGACATTCAGCAAAGCCTTaGTATATGGTATCACAGCGGTTTGGGCCCTCAGAGGCCACGAGT | + |
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Preference number: 5 (lower is better) Translates to: RPMPSPRRMRHSAKP*YMVSQRFGPSEATS Trigger: ACTCGTGGCCTCTGAGGGCCCAAACCGCTGTGATACCATATACCAAGGCTTTGCTGAATGTCTCATCCGCCTGGGGGATGGCATGGGTCG 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118920.2 |
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| CDS-3UTR CAA 90 bp | AAAAGTGTGCATACTGCAGAGCTCACATGGCAGCCACTGCATGCAGTGATGGGACGTAGTGTCTCCTGGTaGGTCTCTGGGCCAGCAATC | + |
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Preference number: 5 (lower is better) Translates to: KSVHTAELTWQPLHAVMGRSVSW*VSGPAI Trigger: GATTGCTGGCCCAGAGACCAACCAGGAGACACTACG...TCCCATCACTGCATGCAGTGGCTGCCATGTGAGCTCTGCAGTATGCACACTTTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060167.6 ENSMUST00000118920.2 |
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| CDS-3UTR CAA 90 bp | ATGAAAAGTGTGCATACTGCAGAGCTCACATGGCAGCCACTGCATGCAGTGATGCGTAGTGTCTCCTGGTaGGTCTCTGGGCCAGCAATC | + |
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Preference number: 5 (lower is better) Translates to: MKSVHTAELTWQPLHAVMRSVSW*VSGPAI Trigger: GATTGCTGGCCCAGAGACCAACCAGGAGACACTACG...CATCACTGCATGCAGTGGCTGCCATGTGAGCTCTGCAGTATGCACACTTTTCAT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000060167.6 ENSMUST00000118920.2 |
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| CDS CCA 72 bp | TCTGGGCAGCCTGACAGGACCCGAGAGGCACAGGCGTaGAAGTCATTCCAGGATCTGCAGACAGTCTGTAGC | + |
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Preference number: 6 (lower is better) Translates to: SGQPDRTREAQA*KSFQDLQTVCS Trigger: GCTACAGACTGTCTGCAGATCCTGGAATGACTTCCACGCCTGTGCCTCTCGGGTCCTGTCAGGCTGCCCAGA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000060167.6 ENSMUST00000118920.2 |
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| CDS CAA 90 bp | TCGACCCATGCCATCCCCCAGGCGGATGAGACATTCAGCAAAGCCTaGGTATATGGTATCACAGCGGTTTGGGCCCTCAGAGGCCACGAG | + |
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Preference number: 6 (lower is better) Translates to: STHAIPQADETFSKA*VYGITAVWALRGHE Trigger: CTCGTGGCCTCTGAGGGCCCAAACCGCTGTGATACCATATACCAAGGCTTTGCTGAATGTCTCATCCGCCTGGGGGATGGCATGGGTCGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000118920.2 |
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| CDS CAA 72 bp | ATTCAGCAAAGCCTTGGTATATGGTATCACAGCGGTTaGGGCCCTCAGAGGCCACGAGTGGTAGTAGCAGCA | + |
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Preference number: 6 (lower is better) Translates to: IQQSLGIWYHSG*GPQRPRVVVAA Trigger: TGCTGCTACTACCACTCGTGGCCTCTGAGGGCCCAAACCGCTGTGATACCATATACCAAGGCTTTGCTGAAT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000118920.2 |
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