Pregenerated sensors for NRM (Mus musculus)
Ensembl gene IDs: ENSMUSG00000059791Ensembl transcript IDs: ENSMUST00000074259.15, ENSMUST00000172931.2, ENSMUST00000174873.2
Found 38 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GTGGAGGAAACTTTGAATAAGAATTCAGGATCAAGATTCAGGAACTaGGTTCTCCAGCAGGAGAGGGCACAGCCCCTTCAGGGCATGACT | + |
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Preference number: 1 (lower is better) Translates to: VEETLNKNSGSRFRN*VLQQERAQPLQGMT Trigger: AGTCATGCCCTGAAGGGGCTGTGCCCTCTCCTGCTGGAGAACTCAGTTCCTGAATCTTGATCCTGAATTCTTATTCAAAGTTTCCTCCAC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074259.15 |
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| 3UTR TCA 90 bp | ACTCATGAGTTTTGTAACCATTCTTGGCTGGTGAGAGGCGGATCTTaGAGACCAGTGGAGGAAACTTTGAATAAGAATTCAGGATCAAGA | + |
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Preference number: 1 (lower is better) Translates to: THEFCNHSWLVRGGS*RPVEETLNKNSGSR Trigger: TCTTGATCCTGAATTCTTATTCAAAGTTTCCTCCACTGGTCTTCAAGATCCGCCTCTCACCAGCCAAGAATGGTTACAAAACTCATGAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074259.15 |
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| 3UTR-3UTR TCA 90 bp | AGAGCAGGGAGCCCTGAGTCAACCCGAGTTAAAATCGGGAGACGTCGCCTTAGGACAGTGCCAGGGGAGTaGGTGCTCCCCAGTGTGAGC | + |
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Preference number: 2 (lower is better) Translates to: RAGSPESTRVKIGRRRLRTVPGE*VLPSVS Trigger: GCTCACACTGGGGAGCACTCACTCCCCTGGCACTGT...CCTAAGGCGACGTCTCCCGATTTTAACTCGGGTTGACTCAGGGCTCCCTGCTCT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000074259.15 |
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| 3UTR-3UTR TCA 90 bp | ATATCCTTTGGGAGAGCAGGGAGCCCTGAGTCAACCCGAGTTAAAATCGGGAGAAGCCCCTTCAGGGCATaGCTTCCAACCTCCTCCGCG | + |
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Preference number: 2 (lower is better) Translates to: ISFGRAGSPESTRVKIGRSPFRA*LPTSSA Trigger: CGCGGAGGAGGTTGGAAGTCATGCCCTGAAGGGGCT...TCTCCCGATTTTAACTCGGGTTGACTCAGGGCTCCCTGCTCTCCCAAAGGATAT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074259.15 |
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| 3UTR-3UTR CCA 90 bp | ATCGGGAGACGTCGCCTTAGGAGACCACACAGAGCTGTAGGGAAAGACCTAAGGAAACTAAGGCAGGAGTaGGGAGGAAGCACAGCCGCG | + |
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Preference number: 2 (lower is better) Translates to: IGRRRLRRPHRAVGKDLRKLRQE*GGSTAA Trigger: CGCGGCTGTGCTTCCTCCCCACTCCTGCCTTAGTTT...CCTTAGGTCTTTCCCTACAGCTCTGTGTGGTCTCCTAAGGCGACGTCTCCCGAT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074259.15 |
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| 3UTR-3UTR TCA 90 bp | ATATCCTTTGGGAGAGCAGGGAGCCCTGAGTCAACCCGAGTTAAAATCGGGAGAATGGAAGGGAATCCCTaGGGTGCAGAGCCAATAACA | + |
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Preference number: 2 (lower is better) Translates to: ISFGRAGSPESTRVKIGRMEGNP*GAEPIT Trigger: TGTTATTGGCTCTGCACCTCAGGGATTCCCTTCCAT...TCTCCCGATTTTAACTCGGGTTGACTCAGGGCTCCCTGCTCTCCCAAAGGATAT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074259.15 |
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| 3UTR-3UTR CCA 90 bp | CGAGTTAAAATCGGGAGACGTCGCCTTAGGAGACCACACAGAGCTGTAGGGAAACATAGCTCCCTGAGGTaGAAACATGGAAGGGAATCC | + |
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Preference number: 2 (lower is better) Translates to: RVKIGRRRLRRPHRAVGKHSSLR*KHGRES Trigger: GGATTCCCTTCCATGTTTCCACCTCAGGGAGCTATG...TTTCCCTACAGCTCTGTGTGGTCTCCTAAGGCGACGTCTCCCGATTTTAACTCG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074259.15 |
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| 3UTR CCA 72 bp | TTCCAACCTCCTCCGCGGTCTGAAGCAAACTCCGTCTaGATACTAAGGGATTTGATTTTGAGGTGGGAAGTA | + |
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Preference number: 3 (lower is better) Translates to: FQPPPRSEANSV*ILRDLILRWEV Trigger: TACTTCCCACCTCAAAATCAAATCCCTTAGTATCCAGACGGAGTTTGCTTCAGACCGCGGAGGAGGTTGGAA 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074259.15 |
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| 3UTR-3UTR CAA 90 bp | ATCGGGAGACGTCGCCTTAGGAGACCACACAGAGCTGTAGGGAAAGACCTAAGGCTAAGGGATTTGATTTaGAGGTGGGAAGTAAATTCA | + |
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Preference number: 3 (lower is better) Translates to: IGRRRLRRPHRAVGKDLRLRDLI*RWEVNS Trigger: TGAATTTACTTCCCACCTCAAAATCAAATCCCTTAG...CCTTAGGTCTTTCCCTACAGCTCTGTGTGGTCTCCTAAGGCGACGTCTCCCGAT 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074259.15 |
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| 3UTR TCA 72 bp | ACTTTGAATAAGAATTCAGGATCAAGATTCAGGAACTaGGTTCTCCAGCAGGAGAGGGCACAGCCCCTTCAG | + |
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Preference number: 3 (lower is better) Translates to: TLNKNSGSRFRN*VLQQERAQPLQ Trigger: CTGAAGGGGCTGTGCCCTCTCCTGCTGGAGAACTCAGTTCCTGAATCTTGATCCTGAATTCTTATTCAAAGT 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074259.15 |
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| 3UTR TCA 72 bp | AAAAGAGCCACTACTTATAAACTTTCAGATAGGCCCTaGCATAGCTCCCTGAGGTGGAAACATGGAAGGGAA | + |
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Preference number: 3 (lower is better) Translates to: KRATTYKLSDRP*HSSLRWKHGRE Trigger: TTCCCTTCCATGTTTCCACCTCAGGGAGCTATGTCAGGGCCTATCTGAAAGTTTATAAGTAGTGGCTCTTTT 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074259.15 |
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| 3UTR TCA 72 bp | TTTTGTAACCATTCTTGGCTGGTGAGAGGCGGATCTTaGAGACCAGTGGAGGAAACTTTGAATAAGAATTCA | + |
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Preference number: 3 (lower is better) Translates to: FCNHSWLVRGGS*RPVEETLNKNS Trigger: TGAATTCTTATTCAAAGTTTCCTCCACTGGTCTTCAAGATCCGCCTCTCACCAGCCAAGAATGGTTACAAAA 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074259.15 |
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| CDS-3UTR GCA 90 bp | AGGGAATCCCTGAGGTGCAGAGCCAATAACAGTGCCAGGGGAGTGAGTGCTCCCGCAAGGCCAGGGCTGTaGACGCCACATAGAGCGACC | + |
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Preference number: 4 (lower is better) Translates to: RESLRCRANNSARGVSAPARPGL*TPHRAT Trigger: GGTCGCTCTATGTGGCGTGCACAGCCCTGGCCTTGC...GGGAGCACTCACTCCCCTGGCACTGTTATTGGCTCTGCACCTCAGGGATTCCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074259.15 |
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| CDS-3UTR CCA 90 bp | AGAGCCAATAACAGTGCCAGGGGAGTGAGTGCTCCCCAGTGTGAGCTGAGGTGCTACCCAGGTGGCCCATaGTTCAGCCCGAGCCTCCCA | + |
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Preference number: 4 (lower is better) Translates to: RANNSARGVSAPQCELRCYPGGP*FSPSLP Trigger: TGGGAGGCTCGGGCTGAACCATGGGCCACCTGGGTA...GCACCTCAGCTCACACTGGGGAGCACTCACTCCCCTGGCACTGTTATTGGCTCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074259.15 |
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| CDS-3UTR CCA 90 bp | AGGGAATCCCTGAGGTGCAGAGCCAATAACAGTGCCAGGGGAGTGAGTGCTCCCGGAGAGGTACCCAGGTaGCCCATGGTTCAGCCCGAG | + |
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Preference number: 4 (lower is better) Translates to: RESLRCRANNSARGVSAPGEVPR*PMVQPE Trigger: CTCGGGCTGAACCATGGGCCACCTGGGTACCTCTCC...GGGAGCACTCACTCCCCTGGCACTGTTATTGGCTCTGCACCTCAGGGATTCCCT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074259.15 |
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| CDS-3UTR CCA 90 bp | AAGATTCAGGAACTGAGTTCTCCAGCAGGAGAGGGCACAGCCCCTTCAGGGCATGATCGGTGCCCAAGGTaGGGACCACCCACAGCACAG | + |
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Preference number: 4 (lower is better) Translates to: KIQELSSPAGEGTAPSGHDRCPR*GPPTAQ Trigger: CTGTGCTGTGGGTGGTCCCCACCTTGGGCACCGATC...ATGCCCTGAAGGGGCTGTGCCCTCTCCTGCTGGAGAACTCAGTTCCTGAATCTT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074259.15 |
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| CDS-3UTR GCA 90 bp | ATATCCTTTGGGAGAGCAGGGAGCCCTGAGTCAACCCGAGTTAAAATCGGGAGATACCGCATCACCAACTaGAAGGCCAGGGCTGTGCAC | + |
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Preference number: 4 (lower is better) Translates to: ISFGRAGSPESTRVKIGRYRITN*KARAVH Trigger: GTGCACAGCCCTGGCCTTGCAGTTGGTGATGCGGTA...TCTCCCGATTTTAACTCGGGTTGACTCAGGGCTCCCTGCTCTCCCAAAGGATAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074259.15 |
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| CDS-3UTR CCA 90 bp | CAGGATCAAGATTCAGGAACTGAGTTCTCCAGCAGGAGAGGGCACAGCCCCTTCCCCCATCCTGAGGTCTaGAGAGAAGGTGGAGTTTTC | + |
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Preference number: 4 (lower is better) Translates to: QDQDSGTEFSSRRGHSPFPHPEV*REGGVF Trigger: GAAAACTCCACCTTCTCTCCAGACCTCAGGATGGGG...GAAGGGGCTGTGCCCTCTCCTGCTGGAGAACTCAGTTCCTGAATCTTGATCCTG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000074259.15 |
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| CDS-3UTR CCA 90 bp | AGGATCAAGATTCAGGAACTGAGTTCTCCAGCAGGAGAGGGCACAGCCCCTTCACAGCTCCACACACACTaGGTGTCGAAGGTGGGAAAA | + |
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Preference number: 4 (lower is better) Translates to: RIKIQELSSPAGEGTAPSQLHTH*VSKVGK Trigger: TTTTCCCACCTTCGACACCCAGTGTGTGTGGAGCTG...TGAAGGGGCTGTGCCCTCTCCTGCTGGAGAACTCAGTTCCTGAATCTTGATCCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074259.15 |
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| CDS-3UTR CCA 90 bp | AGGATCAAGATTCAGGAACTGAGTTCTCCAGCAGGAGAGGGCACAGCCCCTTCAAGCCAGGAAACAACGTaGAGCACAAAGCAGAGGAGA | + |
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Preference number: 4 (lower is better) Translates to: RIKIQELSSPAGEGTAPSSQETT*STKQRR Trigger: TCTCCTCTGCTTTGTGCTCCACGTTGTTTCCTGGCT...TGAAGGGGCTGTGCCCTCTCCTGCTGGAGAACTCAGTTCCTGAATCTTGATCCT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074259.15 |
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| CDS-3UTR TCA 90 bp | CGCGGTACAAAAGAGCCACTACTTATAAACTTTCAGATAGGCCCTGACATAGCTTCTGCTTCCCCATCCTaGGGTCTGGAGAGAAGGTGG | + |
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Preference number: 4 (lower is better) Translates to: RGTKEPLLINFQIGPDIASASPS*GLERRW Trigger: CCACCTTCTCTCCAGACCTCAGGATGGGGAAGCAGA...AGCTATGTCAGGGCCTATCTGAAAGTTTATAAGTAGTGGCTCTTTTGTACCGCG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000074259.15 |
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| 3UTR CAA 72 bp | GAAGCAAACTCCGTCTGGATACTAAGGGATTTGATTTaGAGGTGGGAAGTAAATTCAGGGCTTAGAACTAGC | + |
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Preference number: 4 (lower is better) Translates to: EANSVWILRDLI*RWEVNSGLRTS Trigger: GCTAGTTCTAAGCCCTGAATTTACTTCCCACCTCAAAATCAAATCCCTTAGTATCCAGACGGAGTTTGCTTC 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074259.15 |
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| CDS GCA 90 bp | AGCAGACATAGATCCCAAGCCAAGGAGGCAAGAATGCTCCGGTCCTaGAGGGCAGCCAACCACCCGTGGCGGGCATCGGGACCGCCAGAC | + |
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Preference number: 5 (lower is better) Translates to: SRHRSQAKEARMLRS*RAANHPWRASGPPD Trigger: GTCTGGCGGTCCCGATGCCCGCCACGGGTGGTTGGCTGCCCTGCAGGACCGGAGCATTCTTGCCTCCTTGGCTTGGGATCTATGTCTGCT 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074259.15 |
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| CDS GCA 90 bp | CAAACAGTAGCAGCAGACATAGATCCCAAGCCAAGGAGGCAAGAATaGTCCGGTCCTGCAGGGCAGCCAACCACCCGTGGCGGGCATCGG | + |
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Preference number: 5 (lower is better) Translates to: QTVAADIDPKPRRQE*SGPAGQPTTRGGHR Trigger: CCGATGCCCGCCACGGGTGGTTGGCTGCCCTGCAGGACCGGAGCATTCTTGCCTCCTTGGCTTGGGATCTATGTCTGCTGCTACTGTTTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074259.15 |
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| CDS CCA 90 bp | GCCAGGAAACAACGTGGAGCACAAAGCAGAGGAGAGGTACCCAGGTaGCCCATGGTTCAGCCCGAGCCTCCCATAACACTGGGCCTCTGG | + |
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Preference number: 5 (lower is better) Translates to: ARKQRGAQSRGEVPR*PMVQPEPPITLGLW Trigger: CCAGAGGCCCAGTGTTATGGGAGGCTCGGGCTGAACCATGGGCCACCTGGGTACCTCTCCTCTGCTTTGTGCTCCACGTTGTTTCCTGGC 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074259.15 ENSMUST00000172931.2 |
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| CDS CCA 90 bp | CAAGGTGGGGACCACCCACAGCACAGTCAGCAGCTCCACACACACTaGGTGTCGAAGGTGGGAAAAGAGTCTCAGAGCCCGAGGAGACTT | + |
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Preference number: 5 (lower is better) Translates to: QGGDHPQHSQQLHTH*VSKVGKESQSPRRL Trigger: AAGTCTCCTCGGGCTCTGAGACTCTTTTCCCACCTTCGACACCCAGTGTGTGTGGAGCTGCTGACTGTGCTGTGGGTGGTCCCCACCTTG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 2 transcripts: ENSMUST00000074259.15 ENSMUST00000174873.2 |
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| CDS-3UTR CAA 90 bp | AAGATTCAGGAACTGAGTTCTCCAGCAGGAGAGGGCACAGCCCCTTCAGGGCATAAGGTAGCGGAGATCTaGCTGGTCAAGCCCATGAGC | + |
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Preference number: 5 (lower is better) Translates to: KIQELSSPAGEGTAPSGHKVAEI*LVKPMS Trigger: GCTCATGGGCTTGACCAGCAAGATCTCCGCTACCTT...ATGCCCTGAAGGGGCTGTGCCCTCTCCTGCTGGAGAACTCAGTTCCTGAATCTT 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000074259.15 |
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| CDS GCA 90 bp | TACCGGGATGTCCACGCCTTCACTGCCTCAGTCGCCATAAGGCTGTaGTGTACCACAAACAGTAGCAGCAGACATAGATCCCAAGCCAAG | + |
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Preference number: 5 (lower is better) Translates to: YRDVHAFTASVAIRL*CTTNSSSRHRSQAK Trigger: CTTGGCTTGGGATCTATGTCTGCTGCTACTGTTTGTGGTACAGCACAGCCTTATGGCGACTGAGGCAGTGAAGGCGTGGACATCCCGGTA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074259.15 |
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| CDS CCA 90 bp | TCAAAGACCAGAAGGATGCTAAAGATGAGGAGCCAGGAAACAACGTaGAGCACAAAGCAGAGGAGAGGTACCCAGGTGGCCCATGGTTCA | + |
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Preference number: 5 (lower is better) Translates to: SKTRRMLKMRSQETT*STKQRRGTQVAHGS Trigger: TGAACCATGGGCCACCTGGGTACCTCTCCTCTGCTTTGTGCTCCACGTTGTTTCCTGGCTCCTCATCTTTAGCATCCTTCTGGTCTTTGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074259.15 ENSMUST00000172931.2 |
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| CDS CCA 72 bp | AGAATGCTCCGGTCCTGCAGGGCAGCCAACCACCCGTaGCGGGCATCGGGACCGCCAGACTCCGGGATCCCT | + |
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Preference number: 6 (lower is better) Translates to: RMLRSCRAANHP*RASGPPDSGIP Trigger: AGGGATCCCGGAGTCTGGCGGTCCCGATGCCCGCCACGGGTGGTTGGCTGCCCTGCAGGACCGGAGCATTCT 69% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074259.15 |
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| CDS GCA 72 bp | AGATCCCAAGCCAAGGAGGCAAGAATGCTCCGGTCCTaGAGGGCAGCCAACCACCCGTGGCGGGCATCGGGA | + |
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Preference number: 6 (lower is better) Translates to: RSQAKEARMLRS*RAANHPWRASG Trigger: TCCCGATGCCCGCCACGGGTGGTTGGCTGCCCTGCAGGACCGGAGCATTCTTGCCTCCTTGGCTTGGGATCT 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074259.15 |
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| CDS TCA 72 bp | ACTCCGGGATCCCTCCAAGCAGCGGCCTCAGGGAGGTaGAACGCACGAATTCCACTCCGGTGCCAAAGGCCA | + |
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Preference number: 6 (lower is better) Translates to: TPGSLQAAASGR*NARIPLRCQRP Trigger: TGGCCTTTGGCACCGGAGTGGAATTCGTGCGTTTCACCTCCCTGAGGCCGCTGCTTGGAGGGATCCCGGAGT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074259.15 ENSMUST00000174873.2 |
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| CDS GCA 72 bp | GCAGCAGACATAGATCCCAAGCCAAGGAGGCAAGAATaGTCCGGTCCTGCAGGGCAGCCAACCACCCGTGGC | + |
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Preference number: 6 (lower is better) Translates to: AADIDPKPRRQE*SGPAGQPTTRG Trigger: GCCACGGGTGGTTGGCTGCCCTGCAGGACCGGAGCATTCTTGCCTCCTTGGCTTGGGATCTATGTCTGCTGC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074259.15 |
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| CDS GCA 72 bp | CCCAGTACCGCATCACCAACTGCAAGGCCAGGGCTGTaGACGCCACATAGAGCGACCTCTGAAGGACGCCAA | + |
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Preference number: 6 (lower is better) Translates to: PSTASPTARPGL*TPHRATSEGRQ Trigger: TTGGCGTCCTTCAGAGGTCGCTCTATGTGGCGTGCACAGCCCTGGCCTTGCAGTTGGTGATGCGGTACTGGG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074259.15 |
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| CDS CCA 72 bp | CAACGTGGAGCACAAAGCAGAGGAGAGGTACCCAGGTaGCCCATGGTTCAGCCCGAGCCTCCCATAACACTG | + |
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Preference number: 6 (lower is better) Translates to: QRGAQSRGEVPR*PMVQPEPPITL Trigger: CAGTGTTATGGGAGGCTCGGGCTGAACCATGGGCCACCTGGGTACCTCTCCTCTGCTTTGTGCTCCACGTTG 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074259.15 ENSMUST00000172931.2 |
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| CDS GCA 72 bp | AAGGACGCCAAAGTACCGGGATGTCCACGCCTTCACTaGCTCAGTCGCCATAAGGCTGTGCTGTACCACAAA | + |
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Preference number: 6 (lower is better) Translates to: KDAKVPGCPRLH*LSRHKAVLYHK Trigger: TTTGTGGTACAGCACAGCCTTATGGCGACTGAGGCAGTGAAGGCGTGGACATCCCGGTACTTTGGCGTCCTT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074259.15 |
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| CDS GCA 72 bp | GTCCACGCCTTCACTGCCTCAGTCGCCATAAGGCTGTaGTGTACCACAAACAGTAGCAGCAGACATAGATCC | + |
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Preference number: 6 (lower is better) Translates to: VHAFTASVAIRL*CTTNSSSRHRS Trigger: GGATCTATGTCTGCTGCTACTGTTTGTGGTACAGCACAGCCTTATGGCGACTGAGGCAGTGAAGGCGTGGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000074259.15 |
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| CDS CCA 72 bp | AGAAGGATGCTAAAGATGAGGAGCCAGGAAACAACGTaGAGCACAAAGCAGAGGAGAGGTACCCAGGTGGCC | + |
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Preference number: 6 (lower is better) Translates to: RRMLKMRSQETT*STKQRRGTQVA Trigger: GGCCACCTGGGTACCTCTCCTCTGCTTTGTGCTCCACGTTGTTTCCTGGCTCCTCATCTTTAGCATCCTTCT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000074259.15 ENSMUST00000172931.2 |
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