Pregenerated sensors for NRL (Mus musculus)
Ensembl gene IDs: ENSMUSG00000040632Ensembl transcript IDs: ENSMUST00000062232.15, ENSMUST00000111404.8, ENSMUST00000178694.3, ENSMUST00000228287.2, ENSMUST00000228902.2
Found 101 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TTCAGCTCTGAGAGGCAGGAGGTAGCAAGGGCACCTTCTGCAGTTTaGAGGCCAGCGAAGCCTAGAGGGGGCCACTTAGGCAGTACAAGT | + |
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Preference number: 1 (lower is better) Translates to: FSSERQEVARAPSAV*RPAKPRGGHLGSTS Trigger: ACTTGTACTGCCTAAGTGGCCCCCTCTAGGCTTCGCTGGCCTCCAAACTGCAGAAGGTGCCCTTGCTACCTCCTGCCTCTCAGAGCTGAA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
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| 3UTR CCA 90 bp | GGTTTGGGTTGTGGTAGTGGCGGTGGTGGGTGGGAAGGCTCCATCTaGACCGTTCCTCCACCTCCTCCAATCCACTTGCATTGGTCTTCT | + |
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Preference number: 1 (lower is better) Translates to: GLGCGSGGGGWEGSI*TVPPPPPIHLHWSS Trigger: AGAAGACCAATGCAAGTGGATTGGAGGAGGTGGAGGAACGGTCCAGATGGAGCCTTCCCACCCACCACCGCCACTACCACAACCCAAACC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
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| 3UTR CCA 90 bp | TGCTCTGCCCAAAGGCCCTCCCCATATGTTGCTGAACTGGAGGGCTaGGTTACCATGGCAACTGTGAGACCTGGAGGACAGCTACAGACA | + |
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Preference number: 1 (lower is better) Translates to: CSAQRPSPYVAELEG*VTMATVRPGGQLQT Trigger: TGTCTGTAGCTGTCCTCCAGGTCTCACAGTTGCCATGGTAACCCAGCCCTCCAGTTCAGCAACATATGGGGAGGGCCTTTGGGCAGAGCA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
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| 3UTR GCA 90 bp | GCAGTACAAGTGAGCGTCCCCAGAGCAGGCATGCTGTGTATCTATTaGCTAAGCTACAGCCTGGAAGATGAGACAGAACAGGATGTCCCT | + |
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Preference number: 1 (lower is better) Translates to: AVQVSVPRAGMLCIY*LSYSLEDETEQDVP Trigger: AGGGACATCCTGTTCTGTCTCATCTTCCAGGCTGTAGCTTAGGCAATAGATACACAGCATGCCTGCTCTGGGGACGCTCACTTGTACTGC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
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| 3UTR CCA 90 bp | CTGGAAGATGAGACAGAACAGGATGTCCCTTTGGTACAGTCCTCTTaGGCCCTCTTGAGGAGACCATTAGACCTGCCAAAACTAAAACAG | + |
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Preference number: 1 (lower is better) Translates to: LEDETEQDVPLVQSS*ALLRRPLDLPKLKQ Trigger: CTGTTTTAGTTTTGGCAGGTCTAATGGTCTCCTCAAGAGGGCCCAAGAGGACTGTACCAAAGGGACATCCTGTTCTGTCTCATCTTCCAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
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| 3UTR TCA 90 bp | AGTACAGGCACTAGCTCCTACAGAATTCAGTGCCCTACTAAATCATaGAGAGTCGTGACCTGCAAAAGGGAAGGGAACTCATCTCCAGCA | + |
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Preference number: 1 (lower is better) Translates to: STGTSSYRIQCPTKS*RVVTCKREGNSSPA Trigger: TGCTGGAGATGAGTTCCCTTCCCTTTTGCAGGTCACGACTCTTCATGATTTAGTAGGGCACTGAATTCTGTAGGAGCTAGTGCCTGTACT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
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| 3UTR-3UTR GCA 90 bp | TGGCGGTGGTGGGTGGGAAGGCTCCATCTGGACCGTTCCTCCACCTCCTCCAATATTCAGCATGCCACCTaGCCATCCTCCACACCTCCA | + |
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Preference number: 2 (lower is better) Translates to: WRWWVGRLHLDRSSTSSNIQHAT*PSSTPP Trigger: TGGAGGTGTGGAGGATGGGCAGGTGGCATGCTGAAT...ATTGGAGGAGGTGGAGGAACGGTCCAGATGGAGCCTTCCCACCCACCACCGCCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
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| 3UTR-3UTR GCA 90 bp | TCTGCAGTTTGGAGGCCAGCGAAGCCTAGAGGGGGCCACTTAGGCAGTACAAGTTCCTCCCATTCAGCATaGCACCTGCCCATCCTCCAC | + |
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Preference number: 2 (lower is better) Translates to: SAVWRPAKPRGGHLGSTSSSHSA*HLPILH Trigger: GTGGAGGATGGGCAGGTGGCATGCTGAATGGGAGGA...ACTTGTACTGCCTAAGTGGCCCCCTCTAGGCTTCGCTGGCCTCCAAACTGCAGA 58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
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| 3UTR-3UTR CCA 90 bp | GGGCCACTGCTGCTCCTGGGTGGTTTGGGTTGTGGTAGTGGCGGTGGTGGGTGGGAATTAAGAACTATATaGATAGGAGGGAAGCTGCAC | + |
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Preference number: 2 (lower is better) Translates to: GPLLLLGGLGCGSGGGGWELRTI*IGGKLH Trigger: GTGCAGCTTCCCTCCTATCCATATAGTTCTTAATTC...CCACCCACCACCGCCACTACCACAACCCAAACCACCCAGGAGCAGCAGTGGCCC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
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| 3UTR-3UTR CCA 90 bp | TCTGCAGTTTGGAGGCCAGCGAAGCCTAGAGGGGGCCACTTAGGCAGTACAAGTAACAGGATGTCCCTTTaGTACAGTCCTCTTGGGCCC | + |
|
Preference number: 2 (lower is better) Translates to: SAVWRPAKPRGGHLGSTSNRMSL*YSPLGP Trigger: GGGCCCAAGAGGACTGTACCAAAGGGACATCCTGTT...ACTTGTACTGCCTAAGTGGCCCCCTCTAGGCTTCGCTGGCCTCCAAACTGCAGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
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| 3UTR CAA 90 bp | TGGGAAGGCTCCATCTGGACCGTTCCTCCACCTCCTCCAATCCACTaGCATTGGTCTTCTAGAACTGAGATGTGCACTGCTCGGCTCCAA | + |
|
Preference number: 2 (lower is better) Translates to: WEGSIWTVPPPPPIH*HWSSRTEMCTARLQ Trigger: TTGGAGCCGAGCAGTGCACATCTCAGTTCTAGAAGACCAATGCAAGTGGATTGGAGGAGGTGGAGGAACGGTCCAGATGGAGCCTTCCCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
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| 3UTR-3UTR CCA 90 bp | TTTATTATGCCCCTTAGAGGACAGATGACAGTAGCTGATGAGGTGGCTACTCCCAGTGGCGGTGGTGGGTaGGAAGGCTCCATCTGGACC | + |
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Preference number: 2 (lower is better) Translates to: FIMPLRGQMTVADEVATPSGGGG*EGSIWT Trigger: GGTCCAGATGGAGCCTTCCCACCCACCACCGCCACT...GGGAGTAGCCACCTCATCAGCTACTGTCATCTGTCCTCTAAGGGGCATAATAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
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| 3UTR-3UTR TCA 90 bp | GAGATGTGCACTGCTCGGCTCCAAAAAGGGTCTCTTTCTGCACAGATTAGGCAACTTAGGCAGTACAAGTaGGCGTCCCCAGAGCAGGCA | + |
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Preference number: 2 (lower is better) Translates to: EMCTARLQKGSLSAQIRQLRQYK*ASPEQA Trigger: TGCCTGCTCTGGGGACGCTCACTTGTACTGCCTAAG...TTGCCTAATCTGTGCAGAAAGAGACCCTTTTTGGAGCCGAGCAGTGCACATCTC 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
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| 3UTR CAA 90 bp | TGCCTAAGCTACAGCCTGGAAGATGAGACAGAACAGGATGTCCCTTaGGTACAGTCCTCTTGGGCCCTCTTGAGGAGACCATTAGACCTG | + |
|
Preference number: 2 (lower is better) Translates to: CLSYSLEDETEQDVP*VQSSWALLRRPLDL Trigger: CAGGTCTAATGGTCTCCTCAAGAGGGCCCAAGAGGACTGTACCAAAGGGACATCCTGTTCTGTCTCATCTTCCAGGCTGTAGCTTAGGCA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
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| 3UTR-3UTR CCA 90 bp | CAGATGACAGTAGCTGATGAGGTGGCTACTCCCAACTCAAAGCTTCTGCTCTGCAACAGGATGTCCCTTTaGTACAGTCCTCTTGGGCCC | + |
|
Preference number: 2 (lower is better) Translates to: QMTVADEVATPNSKLLLCNRMSL*YSPLGP Trigger: GGGCCCAAGAGGACTGTACCAAAGGGACATCCTGTT...GCAGAGCAGAAGCTTTGAGTTGGGAGTAGCCACCTCATCAGCTACTGTCATCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
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| 3UTR-3UTR TCA 90 bp | CCCATCCAGGGCACTTGTTCTGCTGCTTTGGACTCTAAAGGCCACTGGGTTGAGTGCCCTACTAAATCATaGAGAGTCGTGACCTGCAAA | + |
|
Preference number: 2 (lower is better) Translates to: PIQGTCSAALDSKGHWVECPTKS*RVVTCK Trigger: TTTGCAGGTCACGACTCTTCATGATTTAGTAGGGCA...CTCAACCCAGTGGCCTTTAGAGTCCAAAGCAGCAGAACAAGTGCCCTGGATGGG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
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| 3UTR-3UTR TCA 90 bp | GAGATGTGCACTGCTCGGCTCCAAAAAGGGTCTCTTTCTGCACAGATTAGGCAACTACAGCCTGGAAGATaGGACAGAACAGGATGTCCC | + |
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Preference number: 2 (lower is better) Translates to: EMCTARLQKGSLSAQIRQLQPGR*DRTGCP Trigger: GGGACATCCTGTTCTGTCTCATCTTCCAGGCTGTAG...TTGCCTAATCTGTGCAGAAAGAGACCCTTTTTGGAGCCGAGCAGTGCACATCTC 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
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| 3UTR-3UTR CCA 90 bp | CTTCTCCCATTTATTATGCCCCTTAGAGGACAGATGACAGTAGCTGATGAGGTGGGCCACTGCTGCTCCTaGGTGGTTTGGGTTGTGGTA | + |
|
Preference number: 2 (lower is better) Translates to: LLPFIMPLRGQMTVADEVGHCCS*VVWVVV Trigger: TACCACAACCCAAACCACCCAGGAGCAGCAGTGGCC...CACCTCATCAGCTACTGTCATCTGTCCTCTAAGGGGCATAATAAATGGGAGAAG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
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| 3UTR-3UTR GCA 90 bp | CTTCTCCCATTTATTATGCCCCTTAGAGGACAGATGACAGTAGCTGATGAGGTGAGCAAGGGCACCTTCTaGAGTTTGGAGGCCAGCGAA | + |
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Preference number: 2 (lower is better) Translates to: LLPFIMPLRGQMTVADEVSKGTF*SLEASE Trigger: TTCGCTGGCCTCCAAACTGCAGAAGGTGCCCTTGCT...CACCTCATCAGCTACTGTCATCTGTCCTCTAAGGGGCATAATAAATGGGAGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
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| 3UTR-3UTR GCA 90 bp | GTGAGACCTGGAGGACAGCTACAGACAGGCCTAGCTAGGGCCACTGCTGCTCCTTACCTCTTTTTAAATTaGAAGGACACTGAGCCAATA | + |
|
Preference number: 2 (lower is better) Translates to: VRPGGQLQTGLARATAAPYLFLN*KDTEPI Trigger: TATTGGCTCAGTGTCCTTGCAATTTAAAAAGAGGTA...AGGAGCAGCAGTGGCCCTAGCTAGGCCTGTCTGTAGCTGTCCTCCAGGTCTCAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
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| 3UTR-3UTR CCA 90 bp | CTTCTCCCATTTATTATGCCCCTTAGAGGACAGATGACAGTAGCTGATGAGGTGGCACCTTCTGCAGTTTaGAGGCCAGCGAAGCCTAGA | + |
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Preference number: 2 (lower is better) Translates to: LLPFIMPLRGQMTVADEVAPSAV*RPAKPR Trigger: TCTAGGCTTCGCTGGCCTCCAAACTGCAGAAGGTGC...CACCTCATCAGCTACTGTCATCTGTCCTCTAAGGGGCATAATAAATGGGAGAAG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
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| 3UTR-3UTR GCA 90 bp | CCCATCTCTCTCTCTCAGCAAACACACAAAACAGTTACCCAACACAGTGATATAATTCAGCATGCCACCTaGCCATCCTCCACACCTCCA | + |
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Preference number: 2 (lower is better) Translates to: PISLSQQTHKTVTQHSDIIQHAT*PSSTPP Trigger: TGGAGGTGTGGAGGATGGGCAGGTGGCATGCTGAAT...TATATCACTGTGTTGGGTAACTGTTTTGTGTGTTTGCTGAGAGAGAGAGATGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
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| 3UTR-3UTR GCA 90 bp | TTAGACCTGCCAAAACTAAAACAGTGTCGGAAGTCATCCAGTTCAAATGAGAGATCCTCCCATTCAGCATaGCACCTGCCCATCCTCCAC | + |
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Preference number: 2 (lower is better) Translates to: LDLPKLKQCRKSSSSNERSSHSA*HLPILH Trigger: GTGGAGGATGGGCAGGTGGCATGCTGAATGGGAGGA...TCTCTCATTTGAACTGGATGACTTCCGACACTGTTTTAGTTTTGGCAGGTCTAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
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| 3UTR-3UTR GCA 90 bp | TTGAACTTGAGGTTTAATTCACAAAAAGTCACAGTCTCTCGGCTCCCTGTTATCTCCTCCCATTCAGCATaGCACCTGCCCATCCTCCAC | + |
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Preference number: 2 (lower is better) Translates to: LNLRFNSQKVTVSRLPVISSHSA*HLPILH Trigger: GTGGAGGATGGGCAGGTGGCATGCTGAATGGGAGGA...GATAACAGGGAGCCGAGAGACTGTGACTTTTTGTGAATTAAACCTCAAGTTCAA 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
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| 3UTR-3UTR TCA 90 bp | GCTACAGCCTGGAAGATGAGACAGAACAGGATGTCCCTTTGGTACAGTCCTCTTGGGAAATTGAAATCCTaGCAGTCCAGTAGTCGTAAA | + |
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Preference number: 2 (lower is better) Translates to: ATAWKMRQNRMSLWYSPLGKLKS*QSSSRK Trigger: TTTACGACTACTGGACTGTCAGGATTTCAATTTCCC...AAGAGGACTGTACCAAAGGGACATCCTGTTCTGTCTCATCTTCCAGGCTGTAGC 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
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| 3UTR-3UTR TCA 90 bp | TTTATTATGCCCCTTAGAGGACAGATGACAGTAGCTGATGAGGTGGCTACTCCCGGGAAATTGAAATCCTaGCAGTCCAGTAGTCGTAAA | + |
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Preference number: 2 (lower is better) Translates to: FIMPLRGQMTVADEVATPGKLKS*QSSSRK Trigger: TTTACGACTACTGGACTGTCAGGATTTCAATTTCCC...GGGAGTAGCCACCTCATCAGCTACTGTCATCTGTCCTCTAAGGGGCATAATAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
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| 3UTR-3UTR TCA 90 bp | GAGATGTGCACTGCTCGGCTCCAAAAAGGGTCTCTTTCTGCACAGATTAGGCAAGTCATCCAGTTCAAATaGGAGAAACCTTGTGACAAT | + |
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Preference number: 2 (lower is better) Translates to: EMCTARLQKGSLSAQIRQVIQFK*EKPCDN Trigger: ATTGTCACAAGGTTTCTCTCATTTGAACTGGATGAC...TTGCCTAATCTGTGCAGAAAGAGACCCTTTTTGGAGCCGAGCAGTGCACATCTC 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
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| 3UTR-3UTR TCA 90 bp | GACCTGCCAAAACTAAAACAGTGTCGGAAGTCATCCAGTTCAAATGAGAGAAACTTGCTTTGCTTAAGGTaGCAGACATACAGCCTGTGT | + |
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Preference number: 2 (lower is better) Translates to: DLPKLKQCRKSSSSNERNLLCLR*QTYSLC Trigger: ACACAGGCTGTATGTCTGTCACCTTAAGCAAAGCAA...GTTTCTCTCATTTGAACTGGATGACTTCCGACACTGTTTTAGTTTTGGCAGGTC 43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
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| 3UTR-3UTR TCA 90 bp | TTGAACTTGAGGTTTAATTCACAAAAAGTCACAGTCTCTCGGCTCCCTGTTATCTGCCCTACTAAATCATaGAGAGTCGTGACCTGCAAA | + |
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Preference number: 2 (lower is better) Translates to: LNLRFNSQKVTVSRLPVICPTKS*RVVTCK Trigger: TTTGCAGGTCACGACTCTTCATGATTTAGTAGGGCA...GATAACAGGGAGCCGAGAGACTGTGACTTTTTGTGAATTAAACCTCAAGTTCAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
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| 3UTR-3UTR TCA 90 bp | TTGAACTTGAGGTTTAATTCACAAAAAGTCACAGTCTCTCGGCTCCCTGTTATCTTGCTTTGCTTAAGGTaGCAGACATACAGCCTGTGT | + |
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Preference number: 2 (lower is better) Translates to: LNLRFNSQKVTVSRLPVILLCLR*QTYSLC Trigger: ACACAGGCTGTATGTCTGTCACCTTAAGCAAAGCAA...GATAACAGGGAGCCGAGAGACTGTGACTTTTTGTGAATTAAACCTCAAGTTCAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
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| 3UTR CAA 90 bp | TGGACTCTAAAGGCCACTGGGTTGAGCAGAGAAGAACATTTTGAGTaGACCTATTACTGTTTGTTTAGGGAAATTGAAATCCTGACAGTC | + |
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Preference number: 2 (lower is better) Translates to: WTLKATGLSREEHFE*TYYCLFREIEILTV Trigger: GACTGTCAGGATTTCAATTTCCCTAAACAAACAGTAATAGGTCAACTCAAAATGTTCTTCTCTGCTCAACCCAGTGGCCTTTAGAGTCCA 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
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| 3UTR-3UTR TCA 90 bp | TTGAACTTGAGGTTTAATTCACAAAAAGTCACAGTCTCTCGGCTCCCTGTTATCGGGAAATTGAAATCCTaGCAGTCCAGTAGTCGTAAA | + |
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Preference number: 2 (lower is better) Translates to: LNLRFNSQKVTVSRLPVIGKLKS*QSSSRK Trigger: TTTACGACTACTGGACTGTCAGGATTTCAATTTCCC...GATAACAGGGAGCCGAGAGACTGTGACTTTTTGTGAATTAAACCTCAAGTTCAA 41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
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| 3UTR-3UTR CCA 90 bp | GACCTGCCAAAACTAAAACAGTGTCGGAAGTCATCCAGTTCAAATGAGAGAAACGAATTAAGAACTATATaGATAGGAGGGAAGCTGCAC | + |
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Preference number: 2 (lower is better) Translates to: DLPKLKQCRKSSSSNERNELRTI*IGGKLH Trigger: GTGCAGCTTCCCTCCTATCCATATAGTTCTTAATTC...GTTTCTCTCATTTGAACTGGATGACTTCCGACACTGTTTTAGTTTTGGCAGGTC 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
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| 3UTR-3UTR CCA 90 bp | TTAGACCTGCCAAAACTAAAACAGTGTCGGAAGTCATCCAGTTCAAATGAGAGAGAATTAAGAACTATATaGATAGGAGGGAAGCTGCAC | + |
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Preference number: 2 (lower is better) Translates to: LDLPKLKQCRKSSSSNERELRTI*IGGKLH Trigger: GTGCAGCTTCCCTCCTATCCATATAGTTCTTAATTC...TCTCTCATTTGAACTGGATGACTTCCGACACTGTTTTAGTTTTGGCAGGTCTAA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
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| 3UTR CCA 72 bp | GAGAGGCAGGAGGTAGCAAGGGCACCTTCTGCAGTTTaGAGGCCAGCGAAGCCTAGAGGGGGCCACTTAGGC | + |
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Preference number: 3 (lower is better) Translates to: ERQEVARAPSAV*RPAKPRGGHLG Trigger: GCCTAAGTGGCCCCCTCTAGGCTTCGCTGGCCTCCAAACTGCAGAAGGTGCCCTTGCTACCTCCTGCCTCTC 62% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
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| 3UTR CCA 72 bp | TGTGGTAGTGGCGGTGGTGGGTGGGAAGGCTCCATCTaGACCGTTCCTCCACCTCCTCCAATCCACTTGCAT | + |
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Preference number: 3 (lower is better) Translates to: CGSGGGGWEGSI*TVPPPPPIHLH Trigger: ATGCAAGTGGATTGGAGGAGGTGGAGGAACGGTCCAGATGGAGCCTTCCCACCCACCACCGCCACTACCACA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
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| 3UTR-3UTR CAA 90 bp | GGGCCACTGCTGCTCCTGGGTGGTTTGGGTTGTGGTAGTGGCGGTGGTGGGTGGCCTCCTCCAATCCACTaGCATTGGTCTTCTAGAACT | + |
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Preference number: 3 (lower is better) Translates to: GPLLLLGGLGCGSGGGGWPPPIH*HWSSRT Trigger: AGTTCTAGAAGACCAATGCAAGTGGATTGGAGGAGG...CCACCCACCACCGCCACTACCACAACCCAAACCACCCAGGAGCAGCAGTGGCCC 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
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| 3UTR-3UTR CAA 90 bp | TCTGCAGTTTGGAGGCCAGCGAAGCCTAGAGGGGGCCACTTAGGCAGTACAAGTTTTGGTACAGTCCTCTaGGGCCCTCTTGAGGAGACC | + |
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Preference number: 3 (lower is better) Translates to: SAVWRPAKPRGGHLGSTSFGTVL*GPLEET Trigger: GGTCTCCTCAAGAGGGCCCAAGAGGACTGTACCAAA...ACTTGTACTGCCTAAGTGGCCCCCTCTAGGCTTCGCTGGCCTCCAAACTGCAGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
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| 3UTR CCA 72 bp | CAAAGGCCCTCCCCATATGTTGCTGAACTGGAGGGCTaGGTTACCATGGCAACTGTGAGACCTGGAGGACAG | + |
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Preference number: 3 (lower is better) Translates to: QRPSPYVAELEG*VTMATVRPGGQ Trigger: CTGTCCTCCAGGTCTCACAGTTGCCATGGTAACCCAGCCCTCCAGTTCAGCAACATATGGGGAGGGCCTTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
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| 3UTR-3UTR CAA 90 bp | TCTGCAGTTTGGAGGCCAGCGAAGCCTAGAGGGGGCCACTTAGGCAGTACAAGTACTTGTTCTGCTGCTTaGGACTCTAAAGGCCACTGG | + |
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Preference number: 3 (lower is better) Translates to: SAVWRPAKPRGGHLGSTSTCSAA*DSKGHW Trigger: CCAGTGGCCTTTAGAGTCCAAAGCAGCAGAACAAGT...ACTTGTACTGCCTAAGTGGCCCCCTCTAGGCTTCGCTGGCCTCCAAACTGCAGA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
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| 3UTR CCA 72 bp | GTCAGGCTCCCATCCAGGGCACTTGTTCTGCTGCTTTaGACTCTAAAGGCCACTGGGTTGAGCAGAGAAGAA | + |
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Preference number: 3 (lower is better) Translates to: VRLPSRALVLLL*TLKATGLSREE Trigger: TTCTTCTCTGCTCAACCCAGTGGCCTTTAGAGTCCAAAGCAGCAGAACAAGTGCCCTGGATGGGAGCCTGAC 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
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| 3UTR CCA 72 bp | TGGACCGTTCCTCCACCTCCTCCAATCCACTTGCATTaGTCTTCTAGAACTGAGATGTGCACTGCTCGGCTC | + |
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Preference number: 3 (lower is better) Translates to: WTVPPPPPIHLH*SSRTEMCTARL Trigger: GAGCCGAGCAGTGCACATCTCAGTTCTAGAAGACCAATGCAAGTGGATTGGAGGAGGTGGAGGAACGGTCCA 54% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
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| 3UTR TCA 72 bp | GCTGTGTATCTATTGCCTAAGCTACAGCCTGGAAGATaGGACAGAACAGGATGTCCCTTTGGTACAGTCCTC | + |
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Preference number: 3 (lower is better) Translates to: AVYLLPKLQPGR*DRTGCPFGTVL Trigger: GAGGACTGTACCAAAGGGACATCCTGTTCTGTCTCATCTTCCAGGCTGTAGCTTAGGCAATAGATACACAGC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
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| 3UTR-3UTR CAA 90 bp | TTGAACTTGAGGTTTAATTCACAAAAAGTCACAGTCTCTCGGCTCCCTGTTATCTCCTCTTGGGCCCTCTaGAGGAGACCATTAGACCTG | + |
|
Preference number: 3 (lower is better) Translates to: LNLRFNSQKVTVSRLPVISSWAL*RRPLDL Trigger: CAGGTCTAATGGTCTCCTCAAGAGGGCCCAAGAGGA...GATAACAGGGAGCCGAGAGACTGTGACTTTTTGTGAATTAAACCTCAAGTTCAA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
||
| 3UTR TCA 72 bp | ACTAGCTCCTACAGAATTCAGTGCCCTACTAAATCATaGAGAGTCGTGACCTGCAAAAGGGAAGGGAACTCA | + |
|
Preference number: 3 (lower is better) Translates to: TSSYRIQCPTKS*RVVTCKREGNS Trigger: TGAGTTCCCTTCCCTTTTGCAGGTCACGACTCTTCATGATTTAGTAGGGCACTGAATTCTGTAGGAGCTAGT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
||
| 3UTR-3UTR CAA 90 bp | TTGAACTTGAGGTTTAATTCACAAAAAGTCACAGTCTCTCGGCTCCCTGTTATCACTTGTTCTGCTGCTTaGGACTCTAAAGGCCACTGG | + |
|
Preference number: 3 (lower is better) Translates to: LNLRFNSQKVTVSRLPVITCSAA*DSKGHW Trigger: CCAGTGGCCTTTAGAGTCCAAAGCAGCAGAACAAGT...GATAACAGGGAGCCGAGAGACTGTGACTTTTTGTGAATTAAACCTCAAGTTCAA 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
||
| 3UTR CCA 72 bp | GCACTACAGATTGAAAACCTTGAATTAAGAACTATATaGATAGGAGGGAAGCTGCACCCTCCTTCTCCTCCT | + |
|
Preference number: 3 (lower is better) Translates to: ALQIENLELRTI*IGGKLHPPSPP Trigger: AGGAGGAGAAGGAGGGTGCAGCTTCCCTCCTATCCATATAGTTCTTAATTCAAGGTTTTCAATCTGTAGTGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
||
| 3UTR-3UTR CAA 90 bp | TTGAACTTGAGGTTTAATTCACAAAAAGTCACAGTCTCTCGGCTCCCTGTTATCCTAAAGGCCACTGGGTaGAGCAGAGAAGAACATTTT | + |
|
Preference number: 3 (lower is better) Translates to: LNLRFNSQKVTVSRLPVILKATG*SREEHF Trigger: AAAATGTTCTTCTCTGCTCAACCCAGTGGCCTTTAG...GATAACAGGGAGCCGAGAGACTGTGACTTTTTGTGAATTAAACCTCAAGTTCAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
||
| 3UTR-3UTR CAA 90 bp | TTGAACTTGAGGTTTAATTCACAAAAAGTCACAGTCTCTCGGCTCCCTGTTATCCTTGTGACAATTGCTTaGCTTAAGGTGACAGACATA | + |
|
Preference number: 3 (lower is better) Translates to: LNLRFNSQKVTVSRLPVILVTIA*LKVTDI Trigger: TATGTCTGTCACCTTAAGCAAAGCAATTGTCACAAG...GATAACAGGGAGCCGAGAGACTGTGACTTTTTGTGAATTAAACCTCAAGTTCAA 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
||
| 3UTR TCA 72 bp | TCCAGTAGTCGTAAAATGGAGAGTCCAAAGATTCGGTaGAAATGCAGCTTCATTGTTAATTACAGCATTAAT | + |
|
Preference number: 3 (lower is better) Translates to: SSSRKMESPKIR*KCSFIVNYSIN Trigger: ATTAATGCTGTAATTAACAATGAAGCTGCATTTTCACCGAATCTTTGGACTCTCCATTTTACGACTACTGGA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
||
| CDS-3UTR GCA 90 bp | ATAGGAGGGAAGCTGCACCCTCCTTCTCCTCCTCCTCCTCCCCTCCTCCTCCTCTCCGACCCCAGCTGCTaGTGCAGGGTGGCCAGCCAA | + |
|
Preference number: 4 (lower is better) Translates to: IGGKLHPPSPPPPPLLLLSDPSC*CRVASQ Trigger: TTGGCTGGCCACCCTGCAGCAGCAGCTGGGGTCGGA...GAGGAGGAGGAGGGGAGGAGGAGGAGGAGAAGGAGGGTGCAGCTTCCCTCCTAT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
||
| CDS-3UTR GCA 90 bp | TGGCGGTGGTGGGTGGGAAGGCTCCATCTGGACCGTTCCTCCACCTCCTCCAATTCCGACCCCAGCTGCTaGTGCAGGGTGGCCAGCCAA | + |
|
Preference number: 4 (lower is better) Translates to: WRWWVGRLHLDRSSTSSNSDPSC*CRVASQ Trigger: TTGGCTGGCCACCCTGCAGCAGCAGCTGGGGTCGGA...ATTGGAGGAGGTGGAGGAACGGTCCAGATGGAGCCTTCCCACCCACCACCGCCA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
||
| CDS-3UTR GCA 90 bp | GTGAGACCTGGAGGACAGCTACAGACAGGCCTAGCTAGGGCCACTGCTGCTCCTAGCGTGCGGCGCCTCTaGTTCAGCCGCAGAGCCTCG | + |
|
Preference number: 4 (lower is better) Translates to: VRPGGQLQTGLARATAAPSVRRL*FSRRAS Trigger: CGAGGCTCTGCGGCTGAAGCAGAGGCGCCGCACGCT...AGGAGCAGCAGTGGCCCTAGCTAGGCCTGTCTGTAGCTGTCCTCCAGGTCTCAC 64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
||
| CDS-3UTR GCA 90 bp | CCTCCTCCTCCTCTTCCTCCTCCCATTCAGCATGCCACCTGCCCATCCTCCACATCCGACCCCAGCTGCTaGTGCAGGGTGGCCAGCCAA | + |
|
Preference number: 4 (lower is better) Translates to: PPPPLPPPIQHATCPSSTSDPSC*CRVASQ Trigger: TTGGCTGGCCACCCTGCAGCAGCAGCTGGGGTCGGA...TGTGGAGGATGGGCAGGTGGCATGCTGAATGGGAGGAGGAAGAGGAGGAGGAGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
||
| CDS-3UTR GCA 90 bp | CCTCCTCCTCCTCTTCCTCCTCCCATTCAGCATGCCACCTGCCCATCCTCCACATCATCCGACCCCAGCTaGTGCTGCAGGGTGGCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: PPPPLPPPIQHATCPSSTSSDPS*CCRVAS Trigger: GCTGGCCACCCTGCAGCAGCAGCTGGGGTCGGATGA...TGTGGAGGATGGGCAGGTGGCATGCTGAATGGGAGGAGGAAGAGGAGGAGGAGG 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
||
| CDS-3UTR GCA 90 bp | GGGCCACTGCTGCTCCTGGGTGGTTTGGGTTGTGGTAGTGGCGGTGGTGGGTGGACAGGACCCTGGTTCTaGAGCAGCTCCACAGCTTCG | + |
|
Preference number: 4 (lower is better) Translates to: GPLLLLGGLGCGSGGGGWTGPWF*SSSTAS Trigger: CGAAGCTGTGGAGCTGCTGCAGAACCAGGGTCCTGT...CCACCCACCACCGCCACTACCACAACCCAAACCACCCAGGAGCAGCAGTGGCCC 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
||
| CDS-3UTR GCA 90 bp | TTGAGACTACTGCCCAGGTCGTCAGGCTCCCATCCAGGGCACTTGTTCTGCTGCAGCGTGCGGCGCCTCTaGTTCAGCCGCAGAGCCTCG | + |
|
Preference number: 4 (lower is better) Translates to: LRLLPRSSGSHPGHLFCCSVRRL*FSRRAS Trigger: CGAGGCTCTGCGGCTGAAGCAGAGGCGCCGCACGCT...GCAGCAGAACAAGTGCCCTGGATGGGAGCCTGACGACCTGGGCAGTAGTCTCAA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
||
| CDS-3UTR CCA 90 bp | TGGCGGTGGTGGGTGGGAAGGCTCCATCTGGACCGTTCCTCCACCTCCTCCAATAGCCCAACGAGGCTGTaGGGACTCCAGATCGGCCCT | + |
|
Preference number: 4 (lower is better) Translates to: WRWWVGRLHLDRSSTSSNSPTRL*GLQIGP Trigger: AGGGCCGATCTGGAGTCCCCACAGCCTCGTTGGGCT...ATTGGAGGAGGTGGAGGAACGGTCCAGATGGAGCCTTCCCACCCACCACCGCCA 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
||
| CDS-3UTR CCA 90 bp | ATAGGAGGGAAGCTGCACCCTCCTTCTCCTCCTCCTCCTCCCCTCCTCCTCCTCAGCCCAACGAGGCTGTaGGGACTCCAGATCGGCCCT | + |
|
Preference number: 4 (lower is better) Translates to: IGGKLHPPSPPPPPLLLLSPTRL*GLQIGP Trigger: AGGGCCGATCTGGAGTCCCCACAGCCTCGTTGGGCT...GAGGAGGAGGAGGGGAGGAGGAGGAGGAGAAGGAGGGTGCAGCTTCCCTCCTAT 63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
||
| CDS-3UTR CCA 90 bp | CCTCCTCCTCCTCTTCCTCCTCCCATTCAGCATGCCACCTGCCCATCCTCCACAGGCAGCTGGACATGCTaGGCTCCTGTCTCTCCCGGG | + |
|
Preference number: 4 (lower is better) Translates to: PPPPLPPPIQHATCPSSTGSWTC*APVSPG Trigger: CCCGGGAGAGACAGGAGCCCAGCATGTCCAGCTGCC...TGTGGAGGATGGGCAGGTGGCATGCTGAATGGGAGGAGGAAGAGGAGGAGGAGG 63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
||
| CDS-3UTR GCA 90 bp | CTACCTCTCCTGTATAGCGCCATCTACCCAGCCACCTCCAAACCGCCACACCCCTCGGGCAGCTGGACATaGTGGGCTCCTGTCTCTCCC | + |
|
Preference number: 4 (lower is better) Translates to: LPLLYSAIYPATSKPPHPSGSWT*WAPVSP Trigger: GGGAGAGACAGGAGCCCAGCATGTCCAGCTGCCCGA...GGGGTGTGGCGGTTTGGAGGTGGCTGGGTAGATGGCGCTATACAGGAGAGGTAG 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
||
| CDS-3UTR CCA 90 bp | ATAGGAGGGAAGCTGCACCCTCCTTCTCCTCCTCCTCCTCCCCTCCTCCTCCTCAGGCACCGAGCTGTATaGTGTGGAGCCCAACGAGGC | + |
|
Preference number: 4 (lower is better) Translates to: IGGKLHPPSPPPPPLLLLRHRAV*CGAQRG Trigger: GCCTCGTTGGGCTCCACACCATACAGCTCGGTGCCT...GAGGAGGAGGAGGGGAGGAGGAGGAGGAGAAGGAGGGTGCAGCTTCCCTCCTAT 62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
||
| CDS-3UTR CCA 90 bp | TTGAGACTACTGCCCAGGTCGTCAGGCTCCCATCCAGGGCACTTGTTCTGCTGCGGCAGCTGGACATGCTaGGCTCCTGTCTCTCCCGGG | + |
|
Preference number: 4 (lower is better) Translates to: LRLLPRSSGSHPGHLFCCGSWTC*APVSPG Trigger: CCCGGGAGAGACAGGAGCCCAGCATGTCCAGCTGCC...GCAGCAGAACAAGTGCCCTGGATGGGAGCCTGACGACCTGGGCAGTAGTCTCAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
||
| CDS-3UTR CCA 90 bp | TGGCGGTGGTGGGTGGGAAGGCTCCATCTGGACCGTTCCTCCACCTCCTCCAATGCTGTTGCAGCCGCTTaGAGCGACAAGCCTGAGCGT | + |
|
Preference number: 4 (lower is better) Translates to: WRWWVGRLHLDRSSTSSNAVAAA*SDKPER Trigger: ACGCTCAGGCTTGTCGCTCCAAGCGGCTGCAACAGC...ATTGGAGGAGGTGGAGGAACGGTCCAGATGGAGCCTTCCCACCCACCACCGCCA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
||
| CDS-3UTR GCA 90 bp | CCCATCCAGGGCACTTGTTCTGCTGCTTTGGACTCTAAAGGCCACTGGGTTGAGCCGCAGCCCCGCAGCTaGCGGTTCAACTCGCGCACA | + |
|
Preference number: 4 (lower is better) Translates to: PIQGTCSAALDSKGHWVEPQPRS*RFNSRT Trigger: TGTGCGCGAGTTGAACCGGCAGCTGCGGGGCTGCGG...CTCAACCCAGTGGCCTTTAGAGTCCAAAGCAGCAGAACAAGTGCCCTGGATGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
||
| CDS-3UTR GCA 90 bp | TCTGCAGTTTGGAGGCCAGCGAAGCCTAGAGGGGGCCACTTAGGCAGTACAAGTAGCCCGCGCCGCTGTTaGAGCCGCTTGGAGCGACAA | + |
|
Preference number: 4 (lower is better) Translates to: SAVWRPAKPRGGHLGSTSSPRRC*SRLERQ Trigger: TTGTCGCTCCAAGCGGCTGCAACAGCGGCGCGGGCT...ACTTGTACTGCCTAAGTGGCCCCCTCTAGGCTTCGCTGGCCTCCAAACTGCAGA 61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
||
| CDS-3UTR CCA 90 bp | ATAGGAGGGAAGCTGCACCCTCCTTCTCCTCCTCCTCCTCCCCTCCTCCTCCTCGCTGCTGCTGCAGGGTaGCCAGCCAATATAGCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: IGGKLHPPSPPPPPLLLLAAAAG*PANIAP Trigger: AGGAGCTATATTGGCTGGCCACCCTGCAGCAGCAGC...GAGGAGGAGGAGGGGAGGAGGAGGAGGAGAAGGAGGGTGCAGCTTCCCTCCTAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
||
| CDS-3UTR CCA 90 bp | CTACCTCTCCTGTATAGCGCCATCTACCCAGCCACCTCCAAACCGCCACACCCCGCTGTTGCAGCCGCTTaGAGCGACAAGCCTGAGCGT | + |
|
Preference number: 4 (lower is better) Translates to: LPLLYSAIYPATSKPPHPAVAAA*SDKPER Trigger: ACGCTCAGGCTTGTCGCTCCAAGCGGCTGCAACAGC...GGGGTGTGGCGGTTTGGAGGTGGCTGGGTAGATGGCGCTATACAGGAGAGGTAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
||
| CDS-3UTR CCA 90 bp | CTACCTCTCCTGTATAGCGCCATCTACCCAGCCACCTCCAAACCGCCACACCCCGCTGCTGCTGCAGGGTaGCCAGCCAATATAGCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: LPLLYSAIYPATSKPPHPAAAAG*PANIAP Trigger: AGGAGCTATATTGGCTGGCCACCCTGCAGCAGCAGC...GGGGTGTGGCGGTTTGGAGGTGGCTGGGTAGATGGCGCTATACAGGAGAGGTAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
||
| CDS-3UTR CCA 90 bp | TGCCCATCCTCCACACCTCCACCCTCAGTACAGGCACTAGCTCCTACAGAATTCGGCAGCTGGACATGCTaGGCTCCTGTCTCTCCCGGG | + |
|
Preference number: 4 (lower is better) Translates to: CPSSTPPPSVQALAPTEFGSWTC*APVSPG Trigger: CCCGGGAGAGACAGGAGCCCAGCATGTCCAGCTGCC...GAATTCTGTAGGAGCTAGTGCCTGTACTGAGGGTGGAGGTGTGGAGGATGGGCA 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
||
| CDS-3UTR GCA 90 bp | TGCCCATCCTCCACACCTCCACCCTCAGTACAGGCACTAGCTCCTACAGAATTCTCGGGCAGCTGGACATaGTGGGCTCCTGTCTCTCCC | + |
|
Preference number: 4 (lower is better) Translates to: CPSSTPPPSVQALAPTEFSGSWT*WAPVSP Trigger: GGGAGAGACAGGAGCCCAGCATGTCCAGCTGCCCGA...GAATTCTGTAGGAGCTAGTGCCTGTACTGAGGGTGGAGGTGTGGAGGATGGGCA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
||
| CDS-3UTR GCA 90 bp | GCTACAGCCTGGAAGATGAGACAGAACAGGATGTCCCTTTGGTACAGTCCTCTTCCGCAGCCCCGCAGCTaGCGGTTCAACTCGCGCACA | + |
|
Preference number: 4 (lower is better) Translates to: ATAWKMRQNRMSLWYSPLPQPRS*RFNSRT Trigger: TGTGCGCGAGTTGAACCGGCAGCTGCGGGGCTGCGG...AAGAGGACTGTACCAAAGGGACATCCTGTTCTGTCTCATCTTCCAGGCTGTAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
||
| CDS-3UTR GCA 90 bp | CAGATGACAGTAGCTGATGAGGTGGCTACTCCCAACTCAAAGCTTCTGCTCTGCAGCCCGCGCCGCTGTTaGAGCCGCTTGGAGCGACAA | + |
|
Preference number: 4 (lower is better) Translates to: QMTVADEVATPNSKLLLCSPRRC*SRLERQ Trigger: TTGTCGCTCCAAGCGGCTGCAACAGCGGCGCGGGCT...GCAGAGCAGAAGCTTTGAGTTGGGAGTAGCCACCTCATCAGCTACTGTCATCTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
||
| CDS-3UTR GCA 90 bp | CCCATCCAGGGCACTTGTTCTGCTGCTTTGGACTCTAAAGGCCACTGGGTTGAGACAGGACCCTGGTTCTaGAGCAGCTCCACAGCTTCG | + |
|
Preference number: 4 (lower is better) Translates to: PIQGTCSAALDSKGHWVETGPWF*SSSTAS Trigger: CGAAGCTGTGGAGCTGCTGCAGAACCAGGGTCCTGT...CTCAACCCAGTGGCCTTTAGAGTCCAAAGCAGCAGAACAAGTGCCCTGGATGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
||
| CDS-3UTR CCA 90 bp | CCCATCCAGGGCACTTGTTCTGCTGCTTTGGACTCTAAAGGCCACTGGGTTGAGGCTGCTGCTGCAGGGTaGCCAGCCAATATAGCTCCT | + |
|
Preference number: 4 (lower is better) Translates to: PIQGTCSAALDSKGHWVEAAAAG*PANIAP Trigger: AGGAGCTATATTGGCTGGCCACCCTGCAGCAGCAGC...CTCAACCCAGTGGCCTTTAGAGTCCAAAGCAGCAGAACAAGTGCCCTGGATGGG 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
||
| CDS-3UTR GCA 90 bp | GAGATGTGCACTGCTCGGCTCCAAAAAGGGTCTCTTTCTGCACAGATTAGGCAATCGGGCAGCTGGACATaGTGGGCTCCTGTCTCTCCC | + |
|
Preference number: 4 (lower is better) Translates to: EMCTARLQKGSLSAQIRQSGSWT*WAPVSP Trigger: GGGAGAGACAGGAGCCCAGCATGTCCAGCTGCCCGA...TTGCCTAATCTGTGCAGAAAGAGACCCTTTTTGGAGCCGAGCAGTGCACATCTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
||
| CDS-3UTR GCA 90 bp | CTTCTCCCATTTATTATGCCCCTTAGAGGACAGATGACAGTAGCTGATGAGGTGAGCGTGCGGCGCCTCTaGTTCAGCCGCAGAGCCTCG | + |
|
Preference number: 4 (lower is better) Translates to: LLPFIMPLRGQMTVADEVSVRRL*FSRRAS Trigger: CGAGGCTCTGCGGCTGAAGCAGAGGCGCCGCACGCT...CACCTCATCAGCTACTGTCATCTGTCCTCTAAGGGGCATAATAAATGGGAGAAG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
||
| CDS-3UTR GCA 90 bp | TTTATTATGCCCCTTAGAGGACAGATGACAGTAGCTGATGAGGTGGCTACTCCCAGCCCGCGCCGCTGTTaGAGCCGCTTGGAGCGACAA | + |
|
Preference number: 4 (lower is better) Translates to: FIMPLRGQMTVADEVATPSPRRC*SRLERQ Trigger: TTGTCGCTCCAAGCGGCTGCAACAGCGGCGCGGGCT...GGGAGTAGCCACCTCATCAGCTACTGTCATCTGTCCTCTAAGGGGCATAATAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
||
| CDS-3UTR CCA 90 bp | GAGATGTGCACTGCTCGGCTCCAAAAAGGGTCTCTTTCTGCACAGATTAGGCAAAGCCCAACGAGGCTGTaGGGACTCCAGATCGGCCCT | + |
|
Preference number: 4 (lower is better) Translates to: EMCTARLQKGSLSAQIRQSPTRL*GLQIGP Trigger: AGGGCCGATCTGGAGTCCCCACAGCCTCGTTGGGCT...TTGCCTAATCTGTGCAGAAAGAGACCCTTTTTGGAGCCGAGCAGTGCACATCTC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
||
| 3UTR CAA 72 bp | CGTCAGGCTCCCATCCAGGGCACTTGTTCTGCTGCTTaGGACTCTAAAGGCCACTGGGTTGAGCAGAGAAGA | + |
|
Preference number: 4 (lower is better) Translates to: RQAPIQGTCSAA*DSKGHWVEQRR Trigger: TCTTCTCTGCTCAACCCAGTGGCCTTTAGAGTCCAAAGCAGCAGAACAAGTGCCCTGGATGGGAGCCTGACG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
||
| 3UTR CAA 72 bp | TACAGCCTGGAAGATGAGACAGAACAGGATGTCCCTTaGGTACAGTCCTCTTGGGCCCTCTTGAGGAGACCA | + |
|
Preference number: 4 (lower is better) Translates to: YSLEDETEQDVP*VQSSWALLRRP Trigger: TGGTCTCCTCAAGAGGGCCCAAGAGGACTGTACCAAAGGGACATCCTGTTCTGTCTCATCTTCCAGGCTGTA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
||
| CDS-3UTR GCA 90 bp | TTTATTATGCCCCTTAGAGGACAGATGACAGTAGCTGATGAGGTGGCTACTCCCACAGGACCCTGGTTCTaGAGCAGCTCCACAGCTTCG | + |
|
Preference number: 4 (lower is better) Translates to: FIMPLRGQMTVADEVATPTGPWF*SSSTAS Trigger: CGAAGCTGTGGAGCTGCTGCAGAACCAGGGTCCTGT...GGGAGTAGCCACCTCATCAGCTACTGTCATCTGTCCTCTAAGGGGCATAATAAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
||
| CDS-3UTR GCA 90 bp | TTAGACCTGCCAAAACTAAAACAGTGTCGGAAGTCATCCAGTTCAAATGAGAGACCGCAGCCCCGCAGCTaGCGGTTCAACTCGCGCACA | + |
|
Preference number: 4 (lower is better) Translates to: LDLPKLKQCRKSSSSNERPQPRS*RFNSRT Trigger: TGTGCGCGAGTTGAACCGGCAGCTGCGGGGCTGCGG...TCTCTCATTTGAACTGGATGACTTCCGACACTGTTTTAGTTTTGGCAGGTCTAA 52% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
||
| CDS-3UTR CCA 90 bp | CTTCTCCCATTTATTATGCCCCTTAGAGGACAGATGACAGTAGCTGATGAGGTGAGGCACCGAGCTGTATaGTGTGGAGCCCAACGAGGC | + |
|
Preference number: 4 (lower is better) Translates to: LLPFIMPLRGQMTVADEVRHRAV*CGAQRG Trigger: GCCTCGTTGGGCTCCACACCATACAGCTCGGTGCCT...CACCTCATCAGCTACTGTCATCTGTCCTCTAAGGGGCATAATAAATGGGAGAAG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
||
| CDS-3UTR GCA 90 bp | TTAGACCTGCCAAAACTAAAACAGTGTCGGAAGTCATCCAGTTCAAATGAGAGATCATCCGACCCCAGCTaGTGCTGCAGGGTGGCCAGC | + |
|
Preference number: 4 (lower is better) Translates to: LDLPKLKQCRKSSSSNERSSDPS*CCRVAS Trigger: GCTGGCCACCCTGCAGCAGCAGCTGGGGTCGGATGA...TCTCTCATTTGAACTGGATGACTTCCGACACTGTTTTAGTTTTGGCAGGTCTAA 51% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
||
| 3UTR CAA 72 bp | TCCATCTGGACCGTTCCTCCACCTCCTCCAATCCACTaGCATTGGTCTTCTAGAACTGAGATGTGCACTGCT | + |
|
Preference number: 4 (lower is better) Translates to: SIWTVPPPPPIH*HWSSRTEMCTA Trigger: AGCAGTGCACATCTCAGTTCTAGAAGACCAATGCAAGTGGATTGGAGGAGGTGGAGGAACGGTCCAGATGGA 51% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
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| CDS-3UTR CCA 90 bp | TTGAACTTGAGGTTTAATTCACAAAAAGTCACAGTCTCTCGGCTCCCTGTTATCGCTGTTGCAGCCGCTTaGAGCGACAAGCCTGAGCGT | + |
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Preference number: 4 (lower is better) Translates to: LNLRFNSQKVTVSRLPVIAVAAA*SDKPER Trigger: ACGCTCAGGCTTGTCGCTCCAAGCGGCTGCAACAGC...GATAACAGGGAGCCGAGAGACTGTGACTTTTTGTGAATTAAACCTCAAGTTCAA 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
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| 3UTR CAA 72 bp | TGGAGAGTCCAAAGATTCGGTGAAAATGCAGCTTCATaGTTAATTACAGCATTAATGCACTACAGATTGAAA | + |
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Preference number: 4 (lower is better) Translates to: WRVQRFGENAAS*LITALMHYRLK Trigger: TTTCAATCTGTAGTGCATTAATGCTGTAATTAACAATGAAGCTGCATTTTCACCGAATCTTTGGACTCTCCA 36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
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| CDS CCA 90 bp | CGCTCGCGAGCCAGGCGTGCCACCTCGGCCCGCAGGGCATCCAGCTaGGCGGCCAGGCGAGCGCGCTCTGCCTCCAGCCCGCGCCGCTGT | + |
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Preference number: 5 (lower is better) Translates to: RSRARRATSARRASS*AARRARSASSPRRC Trigger: ACAGCGGCGCGGGCTGGAGGCAGAGCGCGCTCGCCTGGCCGCCCAGCTGGATGCCCTGCGGGCCGAGGTGGCACGCCTGGCTCGCGAGCG 79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 ENSMUST00000228287.2 |
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| CDS GCA 90 bp | TCGTCGGGACTCAGCCCGAGAACCTCATCCGACCCCAGCTGCTGCTaGAGGGTGGCCAGCCAATATAGCTCCTCCAGGCCTGGCCTAGGG | + |
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Preference number: 5 (lower is better) Translates to: SSGLSPRTSSDPSCC*RVASQYSSSRPGLG Trigger: CCCTAGGCCAGGCCTGGAGGAGCTATATTGGCTGGCCACCCTGCAGCAGCAGCTGGGGTCGGATGAGGTTCTCGGGCTGAGTCCCGACGA 66% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 ENSMUST00000228287.2 |
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| CDS-3UTR CAA 90 bp | CCTCCTCCTCCTCTTCCTCCTCCCATTCAGCATGCCACCTGCCCATCCTCCACACAGCCCGCGCCGCTGTaGCAGCCGCTTGGAGCGACA | + |
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Preference number: 5 (lower is better) Translates to: PPPPLPPPIQHATCPSSTQPAPL*QPLGAT Trigger: TGTCGCTCCAAGCGGCTGCAACAGCGGCGCGGGCTG...TGTGGAGGATGGGCAGGTGGCATGCTGAATGGGAGGAGGAAGAGGAGGAGGAGG 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 3 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 |
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| CDS GCA 90 bp | GCTTCGTCGGGACTCAGCCCGAGAACCTCATCCGACCCCAGCTGCTaGTGCAGGGTGGCCAGCCAATATAGCTCCTCCAGGCCTGGCCTA | + |
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Preference number: 5 (lower is better) Translates to: ASSGLSPRTSSDPSC*CRVASQYSSSRPGL Trigger: TAGGCCAGGCCTGGAGGAGCTATATTGGCTGGCCACCCTGCAGCAGCAGCTGGGGTCGGATGAGGTTCTCGGGCTGAGTCCCGACGAAGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 ENSMUST00000228287.2 |
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| CDS GCA 90 bp | ACAGCTTCGTCGGGACTCAGCCCGAGAACCTCATCCGACCCCAGCTaGTGCTGCAGGGTGGCCAGCCAATATAGCTCCTCCAGGCCTGGC | + |
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Preference number: 5 (lower is better) Translates to: TASSGLSPRTSSDPS*CCRVASQYSSSRPG Trigger: GCCAGGCCTGGAGGAGCTATATTGGCTGGCCACCCTGCAGCAGCAGCTGGGGTCGGATGAGGTTCTCGGGCTGAGTCCCGACGAAGCTGT 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 ENSMUST00000228287.2 |
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| CDS CCA 90 bp | GTGAAGGAGGCACCGAGCTGTATGGTGTGGAGCCCAACGAGGCTGTaGGGACTCCAGATCGGCCCTCAGAAGGCTCCCGCTTTATTTCGA | + |
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Preference number: 5 (lower is better) Translates to: VKEAPSCMVWSPTRL*GLQIGPQKAPALFR Trigger: TCGAAATAAAGCGGGAGCCTTCTGAGGGCCGATCTGGAGTCCCCACAGCCTCGTTGGGCTCCACACCATACAGCTCGGTGCCTCCTTCAC 60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 ENSMUST00000228287.2 ENSMUST00000228902.2 |
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| CDS-3UTR CAA 90 bp | CTTCTCCCATTTATTATGCCCCTTAGAGGACAGATGACAGTAGCTGATGAGGTGCAGCCCGCGCCGCTGTaGCAGCCGCTTGGAGCGACA | + |
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Preference number: 5 (lower is better) Translates to: LLPFIMPLRGQMTVADEVQPAPL*QPLGAT Trigger: TGTCGCTCCAAGCGGCTGCAACAGCGGCGCGGGCTG...CACCTCATCAGCTACTGTCATCTGTCCTCTAAGGGGCATAATAAATGGGAGAAG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
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| CDS-3UTR CAA 90 bp | CCCATCTCTCTCTCTCAGCAAACACACAAAACAGTTACCCAACACAGTGATATACAGCCCGCGCCGCTGTaGCAGCCGCTTGGAGCGACA | + |
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Preference number: 5 (lower is better) Translates to: PISLSQQTHKTVTQHSDIQPAPL*QPLGAT Trigger: TGTCGCTCCAAGCGGCTGCAACAGCGGCGCGGGCTG...TATATCACTGTGTTGGGTAACTGTTTTGTGTGTTTGCTGAGAGAGAGAGATGGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 |
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| CDS CCA 72 bp | GCCAGGCGTGCCACCTCGGCCCGCAGGGCATCCAGCTaGGCGGCCAGGCGAGCGCGCTCTGCCTCCAGCCCG | + |
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Preference number: 6 (lower is better) Translates to: ARRATSARRASS*AARRARSASSP Trigger: CGGGCTGGAGGCAGAGCGCGCTCGCCTGGCCGCCCAGCTGGATGCCCTGCGGGCCGAGGTGGCACGCCTGGC 79% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 ENSMUST00000228287.2 |
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| CDS GCA 72 bp | CAGGGCATCCAGCTGGGCGGCCAGGCGAGCGCGCTCTaGCTCCAGCCCGCGCCGCTGTTGCAGCCGCTTGGA | + |
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Preference number: 6 (lower is better) Translates to: QGIQLGGQASAL*LQPAPLLQPLG Trigger: TCCAAGCGGCTGCAACAGCGGCGCGGGCTGGAGGCAGAGCGCGCTCGCCTGGCCGCCCAGCTGGATGCCCTG 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 ENSMUST00000228287.2 |
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| CDS GCA 72 bp | GCGGGCCTTATAGAGGTCGCGCTCGCGAGCCAGGCGTaGCACCTCGGCCCGCAGGGCATCCAGCTGGGCGGC | + |
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Preference number: 6 (lower is better) Translates to: AGLIEVALASQA*HLGPQGIQLGG Trigger: GCCGCCCAGCTGGATGCCCTGCGGGCCGAGGTGGCACGCCTGGCTCGCGAGCGCGACCTCTATAAGGCCCGC 75% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 4 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 ENSMUST00000228287.2 |
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| CDS CCA 72 bp | GCACCGAGCTGTATGGTGTGGAGCCCAACGAGGCTGTaGGGACTCCAGATCGGCCCTCAGAAGGCTCCCGCT | + |
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Preference number: 6 (lower is better) Translates to: APSCMVWSPTRL*GLQIGPQKAPA Trigger: AGCGGGAGCCTTCTGAGGGCCGATCTGGAGTCCCCACAGCCTCGTTGGGCTCCACACCATACAGCTCGGTGC 65% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 5 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 ENSMUST00000228287.2 ENSMUST00000228902.2 |
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| CDS GCA 72 bp | TCGGGACTCAGCCCGAGAACCTCATCCGACCCCAGCTaGTGCTGCAGGGTGGCCAGCCAATATAGCTCCTCC | + |
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Preference number: 6 (lower is better) Translates to: SGLSPRTSSDPS*CCRVASQYSSS Trigger: GGAGGAGCTATATTGGCTGGCCACCCTGCAGCAGCAGCTGGGGTCGGATGAGGTTCTCGGGCTGAGTCCCGA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 4 transcripts: ENSMUST00000062232.15 ENSMUST00000111404.8 ENSMUST00000178694.3 ENSMUST00000228287.2 |
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