RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NRK (Mus musculus)

Ensembl gene IDs: ENSMUSG00000052854

Ensembl transcript IDs: ENSMUST00000064937.14, ENSMUST00000113052.8, ENSMUST00000131829.2

Found 553 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR GCA 90 bp GGGAGAAGGGGAGTAGAAGATAACAACCAGTGTCATCCTCAGGAGTaGCATCTAGCCACCTGTTTGGAGATAGGGCTTCTCATTGGCCAG +
Preference number: 1 (lower is better)
Translates to: GRRGVEDNNQCHPQE*HLATCLEIGLLIGQ
Trigger: CTGGCCAATGAGAAGCCCTATCTCCAAACAGGTGGCTAGATGGCACTCCTGAGGATGACACTGGTTGTTATCTTCTACTCCCCTTCTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113052.8
3UTR GCA 90 bp TATGTCCTTCCACACGTCCAGGATCTTCTTAAGGAGTTGTTCGTTTaGTTCCTCGGAGGCAGCTTCAGCATTGAGGGAGAGCATCACACC +
Preference number: 1 (lower is better)
Translates to: YVLPHVQDLLKELFV*FLGGSFSIEGEHHT
Trigger: GGTGTGATGCTCTCCCTCAATGCTGAAGCTGCCTCCGAGGAAGCAAACGAACAACTCCTTAAGAAGATCCTGGACGTGTGGAAGGACATA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
3UTR GCA 90 bp GGATTCTCATTAAAACTGGCTTTCTGGACTGCCTCTCCACACTACTaGCATGTATTGGCCCTTGCAGGTCCTGTTACAAGGTATAGGGCA +
Preference number: 1 (lower is better)
Translates to: GFSLKLAFWTASPHY*HVLALAGPVTRYRA
Trigger: TGCCCTATACCTTGTAACAGGACCTGCAAGGGCCAATACATGGCAGTAGTGTGGAGAGGCAGTCCAGAAAGCCAGTTTTAATGAGAATCC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR CCA 90 bp TCAGGAGTGCCATCTAGCCACCTGTTTGGAGATAGGGCTTCTCATTaGCCAGCAAGCTCTAGAGATCTACTTGTCTATCCTCTTAGCACA +
Preference number: 1 (lower is better)
Translates to: SGVPSSHLFGDRASH*PASSRDLLVYPLST
Trigger: TGTGCTAAGAGGATAGACAAGTAGATCTCTAGAGCTTGCTGGCCAATGAGAAGCCCTATCTCCAAACAGGTGGCTAGATGGCACTCCTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113052.8
3UTR TCA 90 bp TTCTTGATTGAGCGGCGCTTCAGCTCATTCTCGAGAATAGTTGACTaGAGAGAGCGCACTTCAATAGCCTTTTGGTCCCATCCAGTGATT +
Preference number: 1 (lower is better)
Translates to: FLIERRFSSFSRIVD*RERTSIAFWSHPVI
Trigger: AATCACTGGATGGGACCAAAAGGCTATTGAAGTGCGCTCTCTTCAGTCAACTATTCTCGAGAATGAGCTGAAGCGCCGCTCAATCAAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
3UTR CCA 90 bp AAATGTTCACACTTCCAACCAGGATTCTCATTAAAACTGGCTTTCTaGACTGCCTCTCCACACTACTGCCATGTATTGGCCCTTGCAGGT +
Preference number: 1 (lower is better)
Translates to: KCSHFQPGFSLKLAF*TASPHYCHVLALAG
Trigger: ACCTGCAAGGGCCAATACATGGCAGTAGTGTGGAGAGGCAGTCCAGAAAGCCAGTTTTAATGAGAATCCTGGTTGGAAGTGTGAACATTT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR GCA 90 bp AAGCTCTGTTTCTTCACTAACACTTTGGCCTTCAAAGCCCAGCCCTaGATTGGTAATCTTTCATGTGTAATTGCTTTGGGACAGCATTGT +
Preference number: 1 (lower is better)
Translates to: KLCFFTNTLAFKAQP*IGNLSCVIALGQHC
Trigger: ACAATGCTGTCCCAAAGCAATTACACATGAAAGATTACCAATGCAGGGCTGGGCTTTGAAGGCCAAAGTGTTAGTGAAGAAACAGAGCTT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR CCA 90 bp TTCAATGGCATGTGTGTGGTGGATGTAAAGGTTGTAGTCGATCACTaGACCCCTTTAAACAGCATAGCTTCTATGGAGCTCTTCAAGTTT +
Preference number: 1 (lower is better)
Translates to: FNGMCVVDVKVVVDH*TPLNSIASMELFKF
Trigger: AAACTTGAAGAGCTCCATAGAAGCTATGCTGTTTAAAGGGGTCCAGTGATCGACTACAACCTTTACATCCACCACACACATGCCATTGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
3UTR TCA 90 bp GGAACATGTCTTGGAACAACCGGAAAAGTACTTCAAAGATCCCATTaGGAGTGTGTGGCATTACTTACTCTCTATCGTACAGAGACTATC +
Preference number: 1 (lower is better)
Translates to: GTCLGTTGKVLQRSH*ECVALLTLYRTETI
Trigger: GATAGTCTCTGTACGATAGAGAGTAAGTAATGCCACACACTCTCAATGGGATCTTTGAAGTACTTTTCCGGTTGTTCCAAGACATGTTCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113052.8
3UTR CCA 90 bp TTGGAACAACCGGAAAAGTACTTCAAAGATCCCATTGAGAGTGTGTaGCATTACTTACTCTCTATCGTACAGAGACTATCTCAGATGAAT +
Preference number: 1 (lower is better)
Translates to: LEQPEKYFKDPIESV*HYLLSIVQRLSQMN
Trigger: ATTCATCTGAGATAGTCTCTGTACGATAGAGAGTAAGTAATGCCACACACTCTCAATGGGATCTTTGAAGTACTTTTCCGGTTGTTCCAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113052.8
3UTR TCA 90 bp GTGTGTGGCATTACTTACTCTCTATCGTACAGAGACTATCTCAGATaGATAGATTGTGTTTTATGTGTATTTGTGTGTGTGTGTGTGTGT +
Preference number: 1 (lower is better)
Translates to: VCGITYSLSYRDYLR*IDCVLCVFVCVCVC
Trigger: ACACACACACACACACACAAATACACATAAAACACAATCTATTCATCTGAGATAGTCTCTGTACGATAGAGAGTAAGTAATGCCACACAC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113052.8
3UTR CCA 90 bp ACTCAGTACAAGTTGAATATAAATGATGCAAACTGGAACATGTCTTaGAACAACCGGAAAAGTACTTCAAAGATCCCATTGAGAGTGTGT +
Preference number: 1 (lower is better)
Translates to: TQYKLNINDANWNMS*NNRKSTSKIPLRVC
Trigger: ACACACTCTCAATGGGATCTTTGAAGTACTTTTCCGGTTGTTCCAAGACATGTTCCAGTTTGCATCATTTATATTCAACTTGTACTGAGT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113052.8
3UTR CAA 90 bp AGAAGACGGTATGTCCTTCCACACGTCCAGGATCTTCTTAAGGAGTaGTTCGTTTGCTTCCTCGGAGGCAGCTTCAGCATTGAGGGAGAG +
Preference number: 2 (lower is better)
Translates to: RRRYVLPHVQDLLKE*FVCFLGGSFSIEGE
Trigger: CTCTCCCTCAATGCTGAAGCTGCCTCCGAGGAAGCAAACGAACAACTCCTTAAGAAGATCCTGGACGTGTGGAAGGACATACCGTCTTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
3UTR-3UTR TCA 90 bp GAGCTCTTCAAGTTTTCCAAGGCTCATAAGGTAAACCCGGCTGTGGTCATTGCTAGGCAGCTTCAGCATTaGGGGAGAGCATCACACCAA +
Preference number: 2 (lower is better)
Translates to: ELFKFSKAHKVNPAVVIARQLQH*GRASHQ
Trigger: TTGGTGTGATGCTCTCCCTCAATGCTGAAGCTGCCT...AGCAATGACCACAGCCGGGTTTACCTTATGAGCCTTGGAAAACTTGAAGAGCTC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
3UTR CAA 90 bp TTCTTAAGGAGTTGTTCGTTTGCTTCCTCGGAGGCAGCTTCAGCATaGAGGGAGAGCATCACACCAAGTCCCAAGCAATCAGGTAAAATG +
Preference number: 2 (lower is better)
Translates to: FLRSCSFASSEAASA*RESITPSPKQSGKM
Trigger: CATTTTACCTGATTGCTTGGGACTTGGTGTGATGCTCTCCCTCAATGCTGAAGCTGCCTCCGAGGAAGCAAACGAACAACTCCTTAAGAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
3UTR-3UTR GCA 90 bp AATCAAACCATTCTCTCTCCAGTACGGCTCCTAACCTGCCAAAATGTTCACACTACTGGCTTTCTGGACTaGCTCTCCACACTACTGCCA +
Preference number: 2 (lower is better)
Translates to: NQTILSPVRLLTCQNVHTTGFLD*LSTLLP
Trigger: TGGCAGTAGTGTGGAGAGGCAGTCCAGAAAGCCAGT...AGTGTGAACATTTTGGCAGGTTAGGAGCCGTACTGGAGAGAGAATGGTTTGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR TCA 90 bp TCTGTTTCTTCACTAACACTTTGGCCTTCAAAGCCCAGCCCTGCATTGGTAATCCTTCAGTGTTTTCTCTaGACCAACAGCCAGGTCAAC +
Preference number: 2 (lower is better)
Translates to: SVSSLTLWPSKPSPALVILQCFL*TNSQVN
Trigger: GTTGACCTGGCTGTTGGTTCAGAGAAAACACTGAAG...GATTACCAATGCAGGGCTGGGCTTTGAAGGCCAAAGTGTTAGTGAAGAAACAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
3UTR-3UTR TCA 90 bp CCCAGTCTGCTTTTTCACCTGCCAAAGGCTATAAAACTCCCACACAGATTTACACACACTCTTCAGATTTaGGAAGCAGAGCTAGAGGAC +
Preference number: 2 (lower is better)
Translates to: PSLLFHLPKAIKLPHRFTHTLQI*EAELED
Trigger: GTCCTCTAGCTCTGCTTCTCAAATCTGAAGAGTGTG...TGTAAATCTGTGTGGGAGTTTTATAGCCTTTGGCAGGTGAAAAAGCAGACTGGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR GCA 90 bp AATCAAACCATTCTCTCTCCAGTACGGCTCCTAACCTGCCAAAATGTTCACACTGTACGGCTCCTAACCTaGCAAAATGTTCACACTTCC +
Preference number: 2 (lower is better)
Translates to: NQTILSPVRLLTCQNVHTVRLLT*QNVHTS
Trigger: GGAAGTGTGAACATTTTGGCAGGTTAGGAGCCGTAC...AGTGTGAACATTTTGGCAGGTTAGGAGCCGTACTGGAGAGAGAATGGTTTGATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR CCA 90 bp AATCAAACCATTCTCTCTCCAGTACGGCTCCTAACCTGCCAAAATGTTCACACTCGAAGGGACATTGAGTaGCTGATTTTCCCTTCTTGC +
Preference number: 2 (lower is better)
Translates to: NQTILSPVRLLTCQNVHTRRDIE*LIFPSC
Trigger: GCAAGAAGGGAAAATCAGCCACTCAATGTCCCTTCG...AGTGTGAACATTTTGGCAGGTTAGGAGCCGTACTGGAGAGAGAATGGTTTGATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113052.8
3UTR CAA 90 bp CCTTTCTTCTTGCTAGGTGTCAAGCTCTGTTTCTTCACTAACACTTaGGCCTTCAAAGCCCAGCCCTGCATTGGTAATCTTTCATGTGTA +
Preference number: 2 (lower is better)
Translates to: PFFLLGVKLCFFTNT*AFKAQPCIGNLSCV
Trigger: TACACATGAAAGATTACCAATGCAGGGCTGGGCTTTGAAGGCCAAAGTGTTAGTGAAGAAACAGAGCTTGACACCTAGCAAGAAGAAAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR TCA 90 bp AATCAAACCATTCTCTCTCCAGTACGGCTCCTAACCTGCCAAAATGTTCACACTGCAGAAGCAAGCATCTaGGGTTTTCTTCTCTTTTTC +
Preference number: 2 (lower is better)
Translates to: NQTILSPVRLLTCQNVHTAEASI*GFLLFF
Trigger: GAAAAAGAGAAGAAAACCTCAGATGCTTGCTTCTGC...AGTGTGAACATTTTGGCAGGTTAGGAGCCGTACTGGAGAGAGAATGGTTTGATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR TCA 90 bp GCTCCTAACCTGCCAAAATGTTCACACTTCCAACCAGGATTCTCATTAAAACTGTCAATCTTTCATACTTaGGCACCCAACGCTCCAAAC +
Preference number: 2 (lower is better)
Translates to: APNLPKCSHFQPGFSLKLSIFHT*APNAPN
Trigger: GTTTGGAGCGTTGGGTGCTCAAGTATGAAAGATTGA...CAGTTTTAATGAGAATCCTGGTTGGAAGTGTGAACATTTTGGCAGGTTAGGAGC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR GCA 90 bp CAACCGGAAAAGTACTTCAAAGATCCCATTGAGAGTGTGTGGCATTACTTACTCGCTTGCTGGAATAAATaGCACAGAGAACAATGGGAG +
Preference number: 2 (lower is better)
Translates to: QPEKYFKDPIESVWHYLLACWNK*HREQWE
Trigger: CTCCCATTGTTCTCTGTGGCATTTATTCCAGCAAGC...GAGTAAGTAATGCCACACACTCTCAATGGGATCTTTGAAGTACTTTTCCGGTTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113052.8
3UTR-3UTR GCA 90 bp AAAACTAAACTGCCACAAAATCAAACCATTCTCTCTCCAGTACGGCTCCTAACCGCTTGCTGGAATAAATaGCACAGAGAACAATGGGAG +
Preference number: 2 (lower is better)
Translates to: KTKLPQNQTILSPVRLLTACWNK*HREQWE
Trigger: CTCCCATTGTTCTCTGTGGCATTTATTCCAGCAAGC...GGTTAGGAGCCGTACTGGAGAGAGAATGGTTTGATTTTGTGGCAGTTTAGTTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR CAA 90 bp TTCAAAGCCCAGCCCTGCATTGGTAATCTTTCATGTGTAATTGCTTaGGGACAGCATTGTAGATTCTCTTTGCTATTTCCTGTGCTTGCT +
Preference number: 2 (lower is better)
Translates to: FKAQPCIGNLSCVIA*GQHCRFSLLFPVLA
Trigger: AGCAAGCACAGGAAATAGCAAAGAGAATCTACAATGCTGTCCCAAAGCAATTACACATGAAAGATTACCAATGCAGGGCTGGGCTTTGAA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR TCA 90 bp GAGTCATTAGGAAAATCCAAATCTTCATTCATTTCTGGCACAAAGGTACCAGGATCTCAGTTTCTTGATTaGGCGGCGCTTCAGCTCATT +
Preference number: 2 (lower is better)
Translates to: ESLGKSKSSFISGTKVPGSQFLD*AALQLI
Trigger: AATGAGCTGAAGCGCCGCTCAATCAAGAAACTGAGA...TCCTGGTACCTTTGTGCCAGAAATGAATGAAGATTTGGATTTTCCTAATGACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
3UTR-3UTR TCA 90 bp AATGTTCCCCTTGATCTATGTAATTTTCTTTGCGCACACAGGTTGTTCAACCTTGAAATCTCAGTTTCTTaGTTGAGCGGCGCTTCAGCT +
Preference number: 2 (lower is better)
Translates to: NVPLDLCNFLCAHRLFNLEISVS*LSGASA
Trigger: AGCTGAAGCGCCGCTCAATCAAGAAACTGAGATTTC...AAGGTTGAACAACCTGTGTGCGCAAAGAAAATTACATAGATCAAGGGGAACATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
3UTR-3UTR CCA 90 bp GAAATAGTTCTGAACCTCCAACATAGCAAGCTCCATTTCCTCAGCGATAAGGTAGATGTTAGGATTCAATaGCATGTGTGTGGTGGATGT +
Preference number: 2 (lower is better)
Translates to: EIVLNLQHSKLHFLSDKVDVRIQ*HVCGGC
Trigger: ACATCCACCACACACATGCCATTGAATCCTAACATC...TACCTTATCGCTGAGGAAATGGAGCTTGCTATGTTGGAGGTTCAGAACTATTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR CCA 90 bp AATGTTCCCCTTGATCTATGTAATTTTCTTTGCGCACACAGGTTGTTCAACCTTCAGGTCAACTGTCAGTaGCTTAAGATCACGAGTTGG +
Preference number: 2 (lower is better)
Translates to: NVPLDLCNFLCAHRLFNLQVNCQ*LKITSW
Trigger: CCAACTCGTGATCTTAAGCCACTGACAGTTGACCTG...AAGGTTGAACAACCTGTGTGCGCAAAGAAAATTACATAGATCAAGGGGAACATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
3UTR CAA 90 bp CAGCAAGCTCTAGAGATCTACTTGTCTATCCTCTTAGCACAGGAATaGAAAGTATTCATCACTGACTGGAATTTGTATGTGATGTCTGCG +
Preference number: 2 (lower is better)
Translates to: QQALEIYLSILLAQE*KVFITDWNLYVMSA
Trigger: CGCAGACATCACATACAAATTCCAGTCAGTGATGAATACTTTCAATTCCTGTGCTAAGAGGATAGACAAGTAGATCTCTAGAGCTTGCTG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113052.8
3UTR-3UTR TCA 90 bp AATCAAACCATTCTCTCTCCAGTACGGCTCCTAACCTGCCAAAATGTTCACACTAGCAGTTACCATAGGTaGGGAAATATCACCTATTTT +
Preference number: 2 (lower is better)
Translates to: NQTILSPVRLLTCQNVHTSSYHR*GNITYF
Trigger: AAAATAGGTGATATTTCCTCACCTATGGTAACTGCT...AGTGTGAACATTTTGGCAGGTTAGGAGCCGTACTGGAGAGAGAATGGTTTGATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR CCA 90 bp CAACCGGAAAAGTACTTCAAAGATCCCATTGAGAGTGTGTGGCATTACTTACTCGCACAAAGTTCCTCATaGCCTTTTGGTGTACATTTT +
Preference number: 2 (lower is better)
Translates to: QPEKYFKDPIESVWHYLLAQSSS*PFGVHF
Trigger: AAAATGTACACCAAAAGGCCATGAGGAACTTTGTGC...GAGTAAGTAATGCCACACACTCTCAATGGGATCTTTGAAGTACTTTTCCGGTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113052.8
3UTR-3UTR CCA 90 bp GCTCCTAACCTGCCAAAATGTTCACACTTCCAACCAGGATTCTCATTAAAACTGGCACAAAGTTCCTCATaGCCTTTTGGTGTACATTTT +
Preference number: 2 (lower is better)
Translates to: APNLPKCSHFQPGFSLKLAQSSS*PFGVHF
Trigger: AAAATGTACACCAAAAGGCCATGAGGAACTTTGTGC...CAGTTTTAATGAGAATCCTGGTTGGAAGTGTGAACATTTTGGCAGGTTAGGAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR GCA 90 bp CAACCGGAAAAGTACTTCAAAGATCCCATTGAGAGTGTGTGGCATTACTTACTCCTATGTAATTTTCTTTaGGCACACAGGTTGTTCAAC +
Preference number: 2 (lower is better)
Translates to: QPEKYFKDPIESVWHYLLLCNFL*AHRLFN
Trigger: GTTGAACAACCTGTGTGCGCAAAGAAAATTACATAG...GAGTAAGTAATGCCACACACTCTCAATGGGATCTTTGAAGTACTTTTCCGGTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113052.8
3UTR-3UTR CCA 90 bp TTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACATAGAGCTTGCTGATGTTAGGATTCAATaGCATGTGTGTGGTGGATGT +
Preference number: 2 (lower is better)
Translates to: LQSLCKTDCTPLEYIELADVRIQ*HVCGGC
Trigger: ACATCCACCACACACATGCCATTGAATCCTAACATC...AGCAAGCTCTATGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR CCA 90 bp GAAATAGTTCTGAACCTCCAACATAGCAAGCTCCATTTCCTCAGCGATAAGGTAATCTTCATTCATTTCTaGCACAAAGGTACCAGGAAA +
Preference number: 2 (lower is better)
Translates to: EIVLNLQHSKLHFLSDKVIFIHF*HKGTRK
Trigger: TTTCCTGGTACCTTTGTGCCAGAAATGAATGAAGAT...TACCTTATCGCTGAGGAAATGGAGCTTGCTATGTTGGAGGTTCAGAACTATTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR CCA 90 bp GCTCCTAACCTGCCAAAATGTTCACACTTCCAACCAGGATTCTCATTAAAACTGATCTTCATTCATTTCTaGCACAAAGGTACCAGGAAA +
Preference number: 2 (lower is better)
Translates to: APNLPKCSHFQPGFSLKLIFIHF*HKGTRK
Trigger: TTTCCTGGTACCTTTGTGCCAGAAATGAATGAAGAT...CAGTTTTAATGAGAATCCTGGTTGGAAGTGTGAACATTTTGGCAGGTTAGGAGC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR TCA 90 bp CTTCTATTACAAAGTATAATGAGGAGGAAAGGACATAGTCCCAGTCTGCTTTTTTCTGCATCGATGATATaGTATCCATTAGCTGAGCTG +
Preference number: 2 (lower is better)
Translates to: LLLQSIMRRKGHSPSLLFSASMI*YPLAEL
Trigger: CAGCTCAGCTAATGGATATCATATCATCGATGCAGA...AAAAAGCAGACTGGGACTATGTCCTTTCCTCCTCATTATACTTTGTAATAGAAG
39% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
3UTR-3UTR GCA 90 bp GCTCCTAACCTGCCAAAATGTTCACACTTCCAACCAGGATTCTCATTAAAACTGGGTTTCTTTACTCCATaGTGTAAATCTGAATACAGA +
Preference number: 2 (lower is better)
Translates to: APNLPKCSHFQPGFSLKLGFFTP*CKSEYR
Trigger: TCTGTATTCAGATTTACAGCATGGAGTAAAGAAACC...CAGTTTTAATGAGAATCCTGGTTGGAAGTGTGAACATTTTGGCAGGTTAGGAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR GCA 90 bp TCTTCAGATTTGAGAAGCAGAGCTAGAGGACTTATTGAGGTATACTTTGTGGTATTTCTACAGTACATGTaGATTGGAGTTCAGTCCTGT +
Preference number: 2 (lower is better)
Translates to: SSDLRSRARGLIEVYFVVFLQYM*IGVQSC
Trigger: ACAGGACTGAACTCCAATGCACATGTACTGTAGAAA...TACCACAAAGTATACCTCAATAAGTCCTCTAGCTCTGCTTCTCAAATCTGAAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR GCA 90 bp AATGTTCCCCTTGATCTATGTAATTTTCTTTGCGCACACAGGTTGTTCAACCTTTTTCTACAGTACATGTaGATTGGAGTTCAGTCCTGT +
Preference number: 2 (lower is better)
Translates to: NVPLDLCNFLCAHRLFNLFLQYM*IGVQSC
Trigger: ACAGGACTGAACTCCAATGCACATGTACTGTAGAAA...AAGGTTGAACAACCTGTGTGCGCAAAGAAAATTACATAGATCAAGGGGAACATT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR TCA 90 bp TTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTAGAGCAGAAGCAAGCATCTaGGGTTTTCTTCTCTTTTTC +
Preference number: 2 (lower is better)
Translates to: LKIIILLAHSSDLRSRARAEASI*GFLLFF
Trigger: GAAAAAGAGAAGAAAACCTCAGATGCTTGCTTCTGC...TCTAGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR TCA 90 bp TCTTCAGATTTGAGAAGCAGAGCTAGAGGACTTATTGAGGTATACTTTGTGGTAAGCAGTTACCATAGGTaGGGAAATATCACCTATTTT +
Preference number: 2 (lower is better)
Translates to: SSDLRSRARGLIEVYFVVSSYHR*GNITYF
Trigger: AAAATAGGTGATATTTCCTCACCTATGGTAACTGCT...TACCACAAAGTATACCTCAATAAGTCCTCTAGCTCTGCTTCTCAAATCTGAAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR TCA 90 bp CTTCTATTACAAAGTATAATGAGGAGGAAAGGACATAGTCCCAGTCTGCTTTTTGGTTCTCCTATAATCTaGACACTGAGTTACTACACT +
Preference number: 2 (lower is better)
Translates to: LLLQSIMRRKGHSPSLLFGSPII*TLSYYT
Trigger: AGTGTAGTAACTCAGTGTTCAGATTATAGGAGAACC...AAAAAGCAGACTGGGACTATGTCCTTTCCTCCTCATTATACTTTGTAATAGAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR TCA 90 bp AGTAACAAAAGTTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACATTTGGTCCCATCCAGTaGTTCTCTTTGTACACTCAA +
Preference number: 2 (lower is better)
Translates to: SNKSYKVCAKQIVHHWSTFGPIQ*FSLYTQ
Trigger: TTGAGTGTACAAAGAGAATCACTGGATGGGACCAAA...TGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAACTTTTGTTACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
3UTR-3UTR GCA 90 bp GAGTCATTAGGAAAATCCAAATCTTCATTCATTTCTGGCACAAAGGTACCAGGACTATGTAATTTTCTTTaGGCACACAGGTTGTTCAAC +
Preference number: 2 (lower is better)
Translates to: ESLGKSKSSFISGTKVPGLCNFL*AHRLFN
Trigger: GTTGAACAACCTGTGTGCGCAAAGAAAATTACATAG...TCCTGGTACCTTTGTGCCAGAAATGAATGAAGATTTGGATTTTCCTAATGACTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR GCA 90 bp TCTTCAGATTTGAGAAGCAGAGCTAGAGGACTTATTGAGGTATACTTTGTGGTATGGCATGAATTTCACTaGTTCAGTTTTGCAGACTTT +
Preference number: 2 (lower is better)
Translates to: SSDLRSRARGLIEVYFVVWHEFH*FSFADF
Trigger: AAAGTCTGCAAAACTGAAGCAGTGAAATTCATGCCA...TACCACAAAGTATACCTCAATAAGTCCTCTAGCTCTGCTTCTCAAATCTGAAGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR CCA 90 bp GTAGCAGTTACCATAGGTGAGGAAATATCACCTATTTTTGGCGTCTATAAAATAGATGTTAGGATTCAATaGCATGTGTGTGGTGGATGT +
Preference number: 2 (lower is better)
Translates to: VAVTIGEEISPIFGVYKIDVRIQ*HVCGGC
Trigger: ACATCCACCACACACATGCCATTGAATCCTAACATC...TATTTTATAGACGCCAAAAATAGGTGATATTTCCTCACCTATGGTAACTGCTAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR CCA 90 bp TCTTCATTCATTTCTGGCACAAAGGTACCAGGAAATGATGTACTATCAGGAAATGACGACATTATTATTTaGCAAGGTCACCTCAGACAT +
Preference number: 2 (lower is better)
Translates to: SSFISGTKVPGNDVLSGNDDIII*QGHLRH
Trigger: ATGTCTGAGGTGACCTTGCCAAATAATAATGTCGTC...ATTTCCTGATAGTACATCATTTCCTGGTACCTTTGTGCCAGAAATGAATGAAGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
3UTR-3UTR GCA 90 bp AATGTTCCCCTTGATCTATGTAATTTTCTTTGCGCACACAGGTTGTTCAACCTTGGTTTCTTTACTCCATaGTGTAAATCTGAATACAGA +
Preference number: 2 (lower is better)
Translates to: NVPLDLCNFLCAHRLFNLGFFTP*CKSEYR
Trigger: TCTGTATTCAGATTTACAGCATGGAGTAAAGAAACC...AAGGTTGAACAACCTGTGTGCGCAAAGAAAATTACATAGATCAAGGGGAACATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR GCA 90 bp AATGTTCCCCTTGATCTATGTAATTTTCTTTGCGCACACAGGTTGTTCAACCTTCATAACTTCAGATTCTaGATCGATGATATGATATCC +
Preference number: 2 (lower is better)
Translates to: NVPLDLCNFLCAHRLFNLHNFRF*IDDMIS
Trigger: GGATATCATATCATCGATGCAGAATCTGAAGTTATG...AAGGTTGAACAACCTGTGTGCGCAAAGAAAATTACATAGATCAAGGGGAACATT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
3UTR-3UTR CCA 90 bp AGATTCTCTTTGCTATTTCCTGTGCTTGCTGGAATAAATGCCACAGAGAACAATTGTTCAACCTTAGTCTaGGTTGCAAAATTCATTATG +
Preference number: 2 (lower is better)
Translates to: RFSLLFPVLAGINATENNCSTLV*VAKFIM
Trigger: CATAATGAATTTTGCAACCCAGACTAAGGTTGAACA...ATTGTTCTCTGTGGCATTTATTCCAGCAAGCACAGGAAATAGCAAAGAGAATCT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR CCA 90 bp TTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTAGATATGTGGATATGGACTaGCATGAATTTCACTGCTTC +
Preference number: 2 (lower is better)
Translates to: LKIIILLAHSSDLRSRARYVDMD*HEFHCF
Trigger: GAAGCAGTGAAATTCATGCCAGTCCATATCCACATA...TCTAGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR GCA 90 bp GTAGCAGTTACCATAGGTGAGGAAATATCACCTATTTTTGGCGTCTATAAAATATGGCATGAATTTCACTaGTTCAGTTTTGCAGACTTT +
Preference number: 2 (lower is better)
Translates to: VAVTIGEEISPIFGVYKIWHEFH*FSFADF
Trigger: AAAGTCTGCAAAACTGAAGCAGTGAAATTCATGCCA...TATTTTATAGACGCCAAAAATAGGTGATATTTCCTCACCTATGGTAACTGCTAC
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR GCA 90 bp AGTTTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTGGTTTCTTTACTCCATaGTGTAAATCTGAATACAGA +
Preference number: 2 (lower is better)
Translates to: SLKIIILLAHSSDLRSRAGFFTP*CKSEYR
Trigger: TCTGTATTCAGATTTACAGCATGGAGTAAAGAAACC...AGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAAACT
34% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR CCA 90 bp AGTAACAAAAGTTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACATGTTCAACCTTAGTCTaGGTTGCAAAATTCATTATG +
Preference number: 2 (lower is better)
Translates to: SNKSYKVCAKQIVHHWSTCSTLV*VAKFIM
Trigger: CATAATGAATTTTGCAACCCAGACTAAGGTTGAACA...TGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAACTTTTGTTACT
34% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR TCA 72 bp GTTGTTCGTTTGCTTCCTCGGAGGCAGCTTCAGCATTaGGGGAGAGCATCACACCAAGTCCCAAGCAATCAG +
Preference number: 3 (lower is better)
Translates to: VVRLLPRRQLQH*GRASHQVPSNQ
Trigger: CTGATTGCTTGGGACTTGGTGTGATGCTCTCCCTCAATGCTGAAGCTGCCTCCGAGGAAGCAAACGAACAAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
3UTR GCA 72 bp CCACACGTCCAGGATCTTCTTAAGGAGTTGTTCGTTTaGTTCCTCGGAGGCAGCTTCAGCATTGAGGGAGAG +
Preference number: 3 (lower is better)
Translates to: PHVQDLLKELFV*FLGGSFSIEGE
Trigger: CTCTCCCTCAATGCTGAAGCTGCCTCCGAGGAAGCAAACGAACAACTCCTTAAGAAGATCCTGGACGTGTGG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
3UTR GCA 72 bp TTAAAACTGGCTTTCTGGACTGCCTCTCCACACTACTaGCATGTATTGGCCCTTGCAGGTCCTGTTACAAGG +
Preference number: 3 (lower is better)
Translates to: LKLAFWTASPHY*HVLALAGPVTR
Trigger: CCTTGTAACAGGACCTGCAAGGGCCAATACATGGCAGTAGTGTGGAGAGGCAGTCCAGAAAGCCAGTTTTAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR GCA 72 bp GGAGTAGAAGATAACAACCAGTGTCATCCTCAGGAGTaGCATCTAGCCACCTGTTTGGAGATAGGGCTTCTC +
Preference number: 3 (lower is better)
Translates to: GVEDNNQCHPQE*HLATCLEIGLL
Trigger: GAGAAGCCCTATCTCCAAACAGGTGGCTAGATGGCACTCCTGAGGATGACACTGGTTGTTATCTTCTACTCC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113052.8
3UTR-3UTR CAA 90 bp TTGTCACCACGGGCACAGAGAAATCTCAGTTTCTTGATTGAGCGGCGCTTCAGCTTAGGGCCAATTCCTTaGAAAGTTGCTGGTGATGCA +
Preference number: 3 (lower is better)
Translates to: LSPRAQRNLSFLIERRFSLGPIP*KVAGDA
Trigger: TGCATCACCAGCAACTTTCAAAGGAATTGGCCCTAA...GCTGAAGCGCCGCTCAATCAAGAAACTGAGATTTCTCTGTGCCCGTGGTGACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
3UTR-3UTR CAA 90 bp TCAAGCTCTGTTTCTTCACTAACACTTTGGCCTTCAAAGCCCAGCCCTGCATTGCTTTGCGCACACAGGTaGTTCAACCTTAGTCTGGGT +
Preference number: 3 (lower is better)
Translates to: SSSVSSLTLWPSKPSPALLCAHR*FNLSLG
Trigger: ACCCAGACTAAGGTTGAACAACCTGTGTGCGCAAAG...CAATGCAGGGCTGGGCTTTGAAGGCCAAAGTGTTAGTGAAGAAACAGAGCTTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR CAA 90 bp CGATCACTGGACCCCTTTAAACAGCATAGCTTCTATGGAGCTCTTCAAGTTTTCGAGGCAGCTTCAGCATaGAGGGAGAGCATCACACCA +
Preference number: 3 (lower is better)
Translates to: RSLDPFKQHSFYGALQVFEAASA*RESITP
Trigger: TGGTGTGATGCTCTCCCTCAATGCTGAAGCTGCCTC...GAAAACTTGAAGAGCTCCATAGAAGCTATGCTGTTTAAAGGGGTCCAGTGATCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
3UTR CCA 72 bp CACTTCCAACCAGGATTCTCATTAAAACTGGCTTTCTaGACTGCCTCTCCACACTACTGCCATGTATTGGCC +
Preference number: 3 (lower is better)
Translates to: HFQPGFSLKLAF*TASPHYCHVLA
Trigger: GGCCAATACATGGCAGTAGTGTGGAGAGGCAGTCCAGAAAGCCAGTTTTAATGAGAATCCTGGTTGGAAGTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR CCA 72 bp CCATCTAGCCACCTGTTTGGAGATAGGGCTTCTCATTaGCCAGCAAGCTCTAGAGATCTACTTGTCTATCCT +
Preference number: 3 (lower is better)
Translates to: PSSHLFGDRASH*PASSRDLLVYP
Trigger: AGGATAGACAAGTAGATCTCTAGAGCTTGCTGGCCAATGAGAAGCCCTATCTCCAAACAGGTGGCTAGATGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113052.8
3UTR-3UTR CAA 90 bp CGATCACTGGACCCCTTTAAACAGCATAGCTTCTATGGAGCTCTTCAAGTTTTCACCCGGCTGTGGTCATaGCTCAGTGTAGAAGCAAAG +
Preference number: 3 (lower is better)
Translates to: RSLDPFKQHSFYGALQVFTRLWS*LSVEAK
Trigger: CTTTGCTTCTACACTGAGCAATGACCACAGCCGGGT...GAAAACTTGAAGAGCTCCATAGAAGCTATGCTGTTTAAAGGGGTCCAGTGATCG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
3UTR-3UTR CAA 90 bp GAAATAGTTCTGAACCTCCAACATAGCAAGCTCCATTTCCTCAGCGATAAGGTACTTTGCGCACACAGGTaGTTCAACCTTAGTCTGGGT +
Preference number: 3 (lower is better)
Translates to: EIVLNLQHSKLHFLSDKVLCAHR*FNLSLG
Trigger: ACCCAGACTAAGGTTGAACAACCTGTGTGCGCAAAG...TACCTTATCGCTGAGGAAATGGAGCTTGCTATGTTGGAGGTTCAGAACTATTTC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR CCA 72 bp ATGTGTGTGGTGGATGTAAAGGTTGTAGTCGATCACTaGACCCCTTTAAACAGCATAGCTTCTATGGAGCTC +
Preference number: 3 (lower is better)
Translates to: MCVVDVKVVVDH*TPLNSIASMEL
Trigger: GAGCTCCATAGAAGCTATGCTGTTTAAAGGGGTCCAGTGATCGACTACAACCTTTACATCCACCACACACAT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
3UTR-3UTR CAA 90 bp AAATGTTCACACTTCCAACCAGGATTCTCATTAAAACTGGCTTTCTGGACTGCCTTTGGGGGACAAAATTaGACGCCTCGTTTGATGTGT +
Preference number: 3 (lower is better)
Translates to: KCSHFQPGFSLKLAFWTAFGGQN*TPRLMC
Trigger: ACACATCAAACGAGGCGTCAAATTTTGTCCCCCAAA...GGCAGTCCAGAAAGCCAGTTTTAATGAGAATCCTGGTTGGAAGTGTGAACATTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR TCA 72 bp AGAGCATCACACCAAGTCCCAAGCAATCAGGTAAAATaGCGACATTATTATTTGGCAAGGTCACCTCAGACA +
Preference number: 3 (lower is better)
Translates to: RASHQVPSNQVK*RHYYLARSPQT
Trigger: TGTCTGAGGTGACCTTGCCAAATAATAATGTCGTCATTTTACCTGATTGCTTGGGACTTGGTGTGATGCTCT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
3UTR-3UTR CAA 90 bp GAAATAGTTCTGAACCTCCAACATAGCAAGCTCCATTTCCTCAGCGATAAGGTATACAGTACATGTGCATaGGAGTTCAGTCCTGTATTC +
Preference number: 3 (lower is better)
Translates to: EIVLNLQHSKLHFLSDKVYSTCA*EFSPVF
Trigger: GAATACAGGACTGAACTCCAATGCACATGTACTGTA...TACCTTATCGCTGAGGAAATGGAGCTTGCTATGTTGGAGGTTCAGAACTATTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR CAA 90 bp AAATGTTCACACTTCCAACCAGGATTCTCATTAAAACTGGCTTTCTGGACTGCCCGAATCACAGTTAACTaGTGGATTCAGGTTCTCCTA +
Preference number: 3 (lower is better)
Translates to: KCSHFQPGFSLKLAFWTARITVN*WIQVLL
Trigger: TAGGAGAACCTGAATCCACAAGTTAACTGTGATTCG...GGCAGTCCAGAAAGCCAGTTTTAATGAGAATCCTGGTTGGAAGTGTGAACATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR CAA 90 bp GAAATAGTTCTGAACCTCCAACATAGCAAGCTCCATTTCCTCAGCGATAAGGTAAGGATAAGCCAGTTTTaGGGTCACATTAGTGTGTCA +
Preference number: 3 (lower is better)
Translates to: EIVLNLQHSKLHFLSDKVRISQF*GHISVS
Trigger: TGACACACTAATGTGACCCAAAAACTGGCTTATCCT...TACCTTATCGCTGAGGAAATGGAGCTTGCTATGTTGGAGGTTCAGAACTATTTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR CAA 90 bp AATCAAACCATTCTCTCTCCAGTACGGCTCCTAACCTGCCAAAATGTTCACACTCTCTTAGCACAGGAATaGAAAGTATTCATCACTGAC +
Preference number: 3 (lower is better)
Translates to: NQTILSPVRLLTCQNVHTLLAQE*KVFITD
Trigger: GTCAGTGATGAATACTTTCAATTCCTGTGCTAAGAG...AGTGTGAACATTTTGGCAGGTTAGGAGCCGTACTGGAGAGAGAATGGTTTGATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113052.8
3UTR CCA 72 bp CCGGAAAAGTACTTCAAAGATCCCATTGAGAGTGTGTaGCATTACTTACTCTCTATCGTACAGAGACTATCT +
Preference number: 3 (lower is better)
Translates to: PEKYFKDPIESV*HYLLSIVQRLS
Trigger: AGATAGTCTCTGTACGATAGAGAGTAAGTAATGCCACACACTCTCAATGGGATCTTTGAAGTACTTTTCCGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113052.8
3UTR-3UTR CAA 90 bp GAAATAGTTCTGAACCTCCAACATAGCAAGCTCCATTTCCTCAGCGATAAGGTATTTGTGCAAAACAGATaGTACACCACTGGAGTACAT +
Preference number: 3 (lower is better)
Translates to: EIVLNLQHSKLHFLSDKVFVQNR*YTTGVH
Trigger: ATGTACTCCAGTGGTGTACAATCTGTTTTGCACAAA...TACCTTATCGCTGAGGAAATGGAGCTTGCTATGTTGGAGGTTCAGAACTATTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR CAA 90 bp GCTCCTAACCTGCCAAAATGTTCACACTTCCAACCAGGATTCTCATTAAAACTGTTTGTGCAAAACAGATaGTACACCACTGGAGTACAT +
Preference number: 3 (lower is better)
Translates to: APNLPKCSHFQPGFSLKLFVQNR*YTTGVH
Trigger: ATGTACTCCAGTGGTGTACAATCTGTTTTGCACAAA...CAGTTTTAATGAGAATCCTGGTTGGAAGTGTGAACATTTTGGCAGGTTAGGAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR CAA 90 bp AGTTTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTCTTTGCGCACACAGGTaGTTCAACCTTAGTCTGGGT +
Preference number: 3 (lower is better)
Translates to: SLKIIILLAHSSDLRSRALCAHR*FNLSLG
Trigger: ACCCAGACTAAGGTTGAACAACCTGTGTGCGCAAAG...AGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAAACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR CAA 90 bp CTTCTATTACAAAGTATAATGAGGAGGAAAGGACATAGTCCCAGTCTGCTTTTTTCAGCGATAAGGTACTaGCACAAAGTTCCTCATGGC +
Preference number: 3 (lower is better)
Translates to: LLLQSIMRRKGHSPSLLFSAIRY*HKVPHG
Trigger: GCCATGAGGAACTTTGTGCAAGTACCTTATCGCTGA...AAAAAGCAGACTGGGACTATGTCCTTTCCTCCTCATTATACTTTGTAATAGAAG
41% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR CAA 90 bp TCCAAATCTTCATTCATTTCTGGCACAAAGGTACCAGGAAATGATGTACTATCAAGAAATCTCAGTTTCTaGATTGAGCGGCGCTTCAGC +
Preference number: 3 (lower is better)
Translates to: SKSSFISGTKVPGNDVLSRNLSF*IERRFS
Trigger: GCTGAAGCGCCGCTCAATCAAGAAACTGAGATTTCT...TGATAGTACATCATTTCCTGGTACCTTTGTGCCAGAAATGAATGAAGATTTGGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
3UTR-3UTR CAA 90 bp CTTCTATTACAAAGTATAATGAGGAGGAAAGGACATAGTCCCAGTCTGCTTTTTTTAGGGCCAATTCCTTaGAAAGTTGCTGGTGATGCA +
Preference number: 3 (lower is better)
Translates to: LLLQSIMRRKGHSPSLLFLGPIP*KVAGDA
Trigger: TGCATCACCAGCAACTTTCAAAGGAATTGGCCCTAA...AAAAAGCAGACTGGGACTATGTCCTTTCCTCCTCATTATACTTTGTAATAGAAG
40% GC, longest homopolymer 7 nt, total homopolymer stretches 7 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR CAA 90 bp GAAATAGTTCTGAACCTCCAACATAGCAAGCTCCATTTCCTCAGCGATAAGGTATATTGTGAAAAAGAATaGGGTAGAATGTTCCCCTTG +
Preference number: 3 (lower is better)
Translates to: EIVLNLQHSKLHFLSDKVYCEKE*GRMFPL
Trigger: CAAGGGGAACATTCTACCCAATTCTTTTTCACAATA...TACCTTATCGCTGAGGAAATGGAGCTTGCTATGTTGGAGGTTCAGAACTATTTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR CAA 90 bp TCTTCATTCATTTCTGGCACAAAGGTACCAGGAAATGATGTACTATCAGGAAATTTTGGGGGACAAAATTaGACGCCTCGTTTGATGTGT +
Preference number: 3 (lower is better)
Translates to: SSFISGTKVPGNDVLSGNFGGQN*TPRLMC
Trigger: ACACATCAAACGAGGCGTCAAATTTTGTCCCCCAAA...ATTTCCTGATAGTACATCATTTCCTGGTACCTTTGTGCCAGAAATGAATGAAGA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR TCA 72 bp ATCTTCATTCATTTCTGGCACAAAGGTACCAGGAAATaGTGTACTATCAGGAAATCACACATAGTCAGCTGC +
Preference number: 3 (lower is better)
Translates to: IFIHFWHKGTRK*CTIRKSHIVSC
Trigger: GCAGCTGACTATGTGTGATTTCCTGATAGTACATCATTTCCTGGTACCTTTGTGCCAGAAATGAATGAAGAT
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR CAA 90 bp TCTTCATTCATTTCTGGCACAAAGGTACCAGGAAATGATGTACTATCAGGAAATTACAGTACATGTGCATaGGAGTTCAGTCCTGTATTC +
Preference number: 3 (lower is better)
Translates to: SSFISGTKVPGNDVLSGNYSTCA*EFSPVF
Trigger: GAATACAGGACTGAACTCCAATGCACATGTACTGTA...ATTTCCTGATAGTACATCATTTCCTGGTACCTTTGTGCCAGAAATGAATGAAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR CAA 90 bp CTTCTATTACAAAGTATAATGAGGAGGAAAGGACATAGTCCCAGTCTGCTTTTTCATTGTAGATTCTCTTaGCTATTTCCTGTGCTTGCT +
Preference number: 3 (lower is better)
Translates to: LLLQSIMRRKGHSPSLLFHCRFS*LFPVLA
Trigger: AGCAAGCACAGGAAATAGCAAAGAGAATCTACAATG...AAAAAGCAGACTGGGACTATGTCCTTTCCTCCTCATTATACTTTGTAATAGAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR CAA 90 bp GTAGCAGTTACCATAGGTGAGGAAATATCACCTATTTTTGGCGTCTATAAAATATTTGTGCAAAACAGATaGTACACCACTGGAGTACAT +
Preference number: 3 (lower is better)
Translates to: VAVTIGEEISPIFGVYKIFVQNR*YTTGVH
Trigger: ATGTACTCCAGTGGTGTACAATCTGTTTTGCACAAA...TATTTTATAGACGCCAAAAATAGGTGATATTTCCTCACCTATGGTAACTGCTAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR-3UTR CAA 90 bp TCCAAATCTTCATTCATTTCTGGCACAAAGGTACCAGGAAATGATGTACTATCATATTGTGAAAAAGAATaGGGTAGAATGTTCCCCTTG +
Preference number: 3 (lower is better)
Translates to: SKSSFISGTKVPGNDVLSYCEKE*GRMFPL
Trigger: CAAGGGGAACATTCTACCCAATTCTTTTTCACAATA...TGATAGTACATCATTTCCTGGTACCTTTGTGCCAGAAATGAATGAAGATTTGGA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR GCA 72 bp ATAAAATATGTGGATATGGACTGGCATGAATTTCACTaGTTCAGTTTTGCAGACTTTAGTATACAGTGGATG +
Preference number: 3 (lower is better)
Translates to: IKYVDMDWHEFH*FSFADFSIQWM
Trigger: CATCCACTGTATACTAAAGTCTGCAAAACTGAAGCAGTGAAATTCATGCCAGTCCATATCCACATATTTTAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR CCA 72 bp AAGTTGAATATAAATGATGCAAACTGGAACATGTCTTaGAACAACCGGAAAAGTACTTCAAAGATCCCATTG +
Preference number: 3 (lower is better)
Translates to: KLNINDANWNMS*NNRKSTSKIPL
Trigger: CAATGGGATCTTTGAAGTACTTTTCCGGTTGTTCCAAGACATGTTCCAGTTTGCATCATTTATATTCAACTT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113052.8
3UTR TCA 72 bp ATTTCAAAGGTTAACTCAGTACAAGTTGAATATAAATaGTGCAAACTGGAACATGTCTTGGAACAACCGGAA +
Preference number: 3 (lower is better)
Translates to: ISKVNSVQVEYK*CKLEHVLEQPE
Trigger: TTCCGGTTGTTCCAAGACATGTTCCAGTTTGCATCATTTATATTCAACTTGTACTGAGTTAACCTTTGAAAT
35% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113052.8
CDS-3UTR TCA 90 bp GAGCTCTTCAAGTTTTCCAAGGCTCATAAGGTAAACCCGGCTGTGGTCATTGCTGTCCTGAGTGGGGAGTaGCTTGAGCATCTGGGCTGC +
Preference number: 4 (lower is better)
Translates to: ELFKFSKAHKVNPAVVIAVLSGE*LEHLGC
Trigger: GCAGCCCAGATGCTCAAGTCACTCCCCACTCAGGAC...AGCAATGACCACAGCCGGGTTTACCTTATGAGCCTTGGAAAACTTGAAGAGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TTGTCACCACGGGCACAGAGAAATCTCAGTTTCTTGATTGAGCGGCGCTTCAGCGCATCTGCTGCTGGTTaGCACTCTGAGAAGCTCAGG +
Preference number: 4 (lower is better)
Translates to: LSPRAQRNLSFLIERRFSASAAG*HSEKLR
Trigger: CCTGAGCTTCTCAGAGTGCCAACCAGCAGCAGATGC...GCTGAAGCGCCGCTCAATCAAGAAACTGAGATTTCTCTGTGCCCGTGGTGACAA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp GAGCTCTTCAAGTTTTCCAAGGCTCATAAGGTAAACCCGGCTGTGGTCATTGCTTGCTGCTCAGCAGCCTaGCCCTGCCTTGGCTGTTCA +
Preference number: 4 (lower is better)
Translates to: ELFKFSKAHKVNPAVVIACCSAA*PCLGCS
Trigger: TGAACAGCCAAGGCAGGGCCAGGCTGCTGAGCAGCA...AGCAATGACCACAGCCGGGTTTACCTTATGAGCCTTGGAAAACTTGAAGAGCTC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
3UTR CAA 72 bp CAGTGTCATCCTCAGGAGTGCCATCTAGCCACCTGTTaGGAGATAGGGCTTCTCATTGGCCAGCAAGCTCTA +
Preference number: 4 (lower is better)
Translates to: QCHPQECHLATC*EIGLLIGQQAL
Trigger: TAGAGCTTGCTGGCCAATGAGAAGCCCTATCTCCAAACAGGTGGCTAGATGGCACTCCTGAGGATGACACTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113052.8
CDS-3UTR GCA 90 bp TTGTCACCACGGGCACAGAGAAATCTCAGTTTCTTGATTGAGCGGCGCTTCAGCACCGGATTATGTATCTaGTGCTGCTCAGCAGCCTGG +
Preference number: 4 (lower is better)
Translates to: LSPRAQRNLSFLIERRFSTGLCI*CCSAAW
Trigger: CCAGGCTGCTGAGCAGCAGCAGATACATAATCCGGT...GCTGAAGCGCCGCTCAATCAAGAAACTGAGATTTCTCTGTGCCCGTGGTGACAA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp AATCAAACCATTCTCTCTCCAGTACGGCTCCTAACCTGCCAAAATGTTCACACTATGGGCTGCTGCTGCTaGTGCTGCGGCTGGGCTTCT +
Preference number: 4 (lower is better)
Translates to: NQTILSPVRLLTCQNVHTMGCCC*CCGWAS
Trigger: AGAAGCCCAGCCGCAGCAGCAGCAGCAGCAGCCCAT...AGTGTGAACATTTTGGCAGGTTAGGAGCCGTACTGGAGAGAGAATGGTTTGATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp AATCAAACCATTCTCTCTCCAGTACGGCTCCTAACCTGCCAAAATGTTCACACTCGGATGTTCATGGGCTaGTGCTGCTGCTGCTGCGGC +
Preference number: 4 (lower is better)
Translates to: NQTILSPVRLLTCQNVHTRMFMG*CCCCCG
Trigger: GCCGCAGCAGCAGCAGCAGCAGCCCATGAACATCCG...AGTGTGAACATTTTGGCAGGTTAGGAGCCGTACTGGAGAGAGAATGGTTTGATT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp AGTCCCAGTCTGCTTTTTCACCTGCCAAAGGCTATAAAACTCCCACACAGATTTCGGATGTTCATGGGCTaGTGCTGCTGCTGCTGCGGC +
Preference number: 4 (lower is better)
Translates to: SPSLLFHLPKAIKLPHRFRMFMG*CCCCCG
Trigger: GCCGCAGCAGCAGCAGCAGCAGCCCATGAACATCCG...AAATCTGTGTGGGAGTTTTATAGCCTTTGGCAGGTGAAAAAGCAGACTGGGACT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TCTGTTTCTTCACTAACACTTTGGCCTTCAAAGCCCAGCCCTGCATTGGTAATCTCGGCTACGGGGGCCTaGACCTCTGGAGAAGTAGCT +
Preference number: 4 (lower is better)
Translates to: SVSSLTLWPSKPSPALVISATGA*TSGEVA
Trigger: AGCTACTTCTCCAGAGGTCCAGGCCCCCGTAGCCGA...GATTACCAATGCAGGGCTGGGCTTTGAAGGCCAAAGTGTTAGTGAAGAAACAGA
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp TTGTCACCACGGGCACAGAGAAATCTCAGTTTCTTGATTGAGCGGCGCTTCAGCTCCATCAGATACAGATaGGATTGGGTGCCCAGCAAC +
Preference number: 4 (lower is better)
Translates to: LSPRAQRNLSFLIERRFSSIRYR*DWVPSN
Trigger: GTTGCTGGGCACCCAATCTCATCTGTATCTGATGGA...GCTGAAGCGCCGCTCAATCAAGAAACTGAGATTTCTCTGTGCCCGTGGTGACAA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp GAGCTCTTCAAGTTTTCCAAGGCTCATAAGGTAAACCCGGCTGTGGTCATTGCTGGATTATGTATCTGCTaGTGCTCAGCAGCCTGGCCC +
Preference number: 4 (lower is better)
Translates to: ELFKFSKAHKVNPAVVIAGLCIC*CSAAWP
Trigger: GGGCCAGGCTGCTGAGCAGCAGCAGATACATAATCC...AGCAATGACCACAGCCGGGTTTACCTTATGAGCCTTGGAAAACTTGAAGAGCTC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp AAAACTAAACTGCCACAAAATCAAACCATTCTCTCTCCAGTACGGCTCCTAACCATGGGCTGCTGCTGCTaGTGCTGCGGCTGGGCTTCT +
Preference number: 4 (lower is better)
Translates to: KTKLPQNQTILSPVRLLTMGCCC*CCGWAS
Trigger: AGAAGCCCAGCCGCAGCAGCAGCAGCAGCAGCCCAT...GGTTAGGAGCCGTACTGGAGAGAGAATGGTTTGATTTTGTGGCAGTTTAGTTTT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp GAAATAGTTCTGAACCTCCAACATAGCAAGCTCCATTTCCTCAGCGATAAGGTAAGCCTGGCCCTGCCTTaGCTGTTCAGGTGCCCTGTC +
Preference number: 4 (lower is better)
Translates to: EIVLNLQHSKLHFLSDKVSLALP*LFRCPV
Trigger: GACAGGGCACCTGAACAGCCAAGGCAGGGCCAGGCT...TACCTTATCGCTGAGGAAATGGAGCTTGCTATGTTGGAGGTTCAGAACTATTTC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR CAA 72 bp AGTTGTTCGTTTGCTTCCTCGGAGGCAGCTTCAGCATaGAGGGAGAGCATCACACCAAGTCCCAAGCAATCA +
Preference number: 4 (lower is better)
Translates to: SCSFASSEAASA*RESITPSPKQS
Trigger: TGATTGCTTGGGACTTGGTGTGATGCTCTCCCTCAATGCTGAAGCTGCCTCCGAGGAAGCAAACGAACAACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp AATCAAACCATTCTCTCTCCAGTACGGCTCCTAACCTGCCAAAATGTTCACACTGAGTGGGGAGTGACTTaGGCATCTGGGCTGCTTTGC +
Preference number: 4 (lower is better)
Translates to: NQTILSPVRLLTCQNVHTEWGVT*ASGLLC
Trigger: GCAAAGCAGCCCAGATGCTCAAGTCACTCCCCACTC...AGTGTGAACATTTTGGCAGGTTAGGAGCCGTACTGGAGAGAGAATGGTTTGATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp TTGTCACCACGGGCACAGAGAAATCTCAGTTTCTTGATTGAGCGGCGCTTCAGCTTGCTCTTGGCCCATTaGAAGCAGCACCATGATTAC +
Preference number: 4 (lower is better)
Translates to: LSPRAQRNLSFLIERRFSLLLAH*KQHHDY
Trigger: GTAATCATGGTGCTGCTTTCAATGGGCCAAGAGCAA...GCTGAAGCGCCGCTCAATCAAGAAACTGAGATTTCTCTGTGCCCGTGGTGACAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp GCCACAGAAGACGGTATGTCCTTCCACACGTCCAGGATCTTCTTAAGGAGTTGTCTCAGCCAAGACAGATaGTACACGCGAAGTCTGTTC +
Preference number: 4 (lower is better)
Translates to: ATEDGMSFHTSRIFLRSCLSQDR*YTRSLF
Trigger: GAACAGACTTCGCGTGTATCATCTGTCTTGGCTGAG...ACAACTCCTTAAGAAGATCCTGGACGTGTGGAAGGACATACCGTCTTCTGTGGC
50% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp CCCAGTCTGCTTTTTCACCTGCCAAAGGCTATAAAACTCCCACACAGATTTACATCCTGCACCTCAGCTTaGTCAGGCTCCCTATCCTCC +
Preference number: 4 (lower is better)
Translates to: PSLLFHLPKAIKLPHRFTSCTSA*SGSLSS
Trigger: GGAGGATAGGGAGCCTGAGCAAGCTGAGGTGCAGGA...TGTAAATCTGTGTGGGAGTTTTATAGCCTTTGGCAGGTGAAAAAGCAGACTGGG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp AATGTTCCCCTTGATCTATGTAATTTTCTTTGCGCACACAGGTTGTTCAACCTTGGCTGCTGCTGCTGCTaGTGCGGCTGGGCTTCTTCC +
Preference number: 4 (lower is better)
Translates to: NVPLDLCNFLCAHRLFNLGCCCC*CGWASS
Trigger: GGAAGAAGCCCAGCCGCAGCAGCAGCAGCAGCAGCC...AAGGTTGAACAACCTGTGTGCGCAAAGAAAATTACATAGATCAAGGGGAACATT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp AATCAAACCATTCTCTCTCCAGTACGGCTCCTAACCTGCCAAAATGTTCACACTGGGTCCTCATCACAATaGATCACCTCTGGGGCCATC +
Preference number: 4 (lower is better)
Translates to: NQTILSPVRLLTCQNVHTGSSSQ*ITSGAI
Trigger: GATGGCCCCAGAGGTGATTCATTGTGATGAGGACCC...AGTGTGAACATTTTGGCAGGTTAGGAGCCGTACTGGAGAGAGAATGGTTTGATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp AATCAAACCATTCTCTCTCCAGTACGGCTCCTAACCTGCCAAAATGTTCACACTTCCTGTGGGTCTTCTTaGTCAGGTAGCCACCTTGGC +
Preference number: 4 (lower is better)
Translates to: NQTILSPVRLLTCQNVHTSCGSS*SGSHLG
Trigger: GCCAAGGTGGCTACCTGATCAAGAAGACCCACAGGA...AGTGTGAACATTTTGGCAGGTTAGGAGCCGTACTGGAGAGAGAATGGTTTGATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp CCCAGTCTGCTTTTTCACCTGCCAAAGGCTATAAAACTCCCACACAGATTTACATCCTGTGGGTCTTCTTaGTCAGGTAGCCACCTTGGC +
Preference number: 4 (lower is better)
Translates to: PSLLFHLPKAIKLPHRFTSCGSS*SGSHLG
Trigger: GCCAAGGTGGCTACCTGATCAAGAAGACCCACAGGA...TGTAAATCTGTGTGGGAGTTTTATAGCCTTTGGCAGGTGAAAAAGCAGACTGGG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp GAGCTCTTCAAGTTTTCCAAGGCTCATAAGGTAAACCCGGCTGTGGTCATTGCTTCCGTCCATTTGTTCTaGTCACTTGGGCACTCACTC +
Preference number: 4 (lower is better)
Translates to: ELFKFSKAHKVNPAVVIASVHLF*SLGHSL
Trigger: GAGTGAGTGCCCAAGTGAGCAGAACAAATGGACGGA...AGCAATGACCACAGCCGGGTTTACCTTATGAGCCTTGGAAAACTTGAAGAGCTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp AGTCCCAGTCTGCTTTTTCACCTGCCAAAGGCTATAAAACTCCCACACAGATTTCCTTGGCTGTTCAGGTaGCCTGTCTTGCCCCTGAAA +
Preference number: 4 (lower is better)
Translates to: SPSLLFHLPKAIKLPHRFPWLFR*PVLPLK
Trigger: TTTCAGGGGCAAGACAGGGCACCTGAACAGCCAAGG...AAATCTGTGTGGGAGTTTTATAGCCTTTGGCAGGTGAAAAAGCAGACTGGGACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp TCTGATGTTAGGATTCAATGGCATGTGTGTGGTGGATGTAAAGGTTGTAGTCGATCCTGCACCTCAGCTTaGTCAGGCTCCCTATCCTCC +
Preference number: 4 (lower is better)
Translates to: SDVRIQWHVCGGCKGCSRSCTSA*SGSLSS
Trigger: GGAGGATAGGGAGCCTGAGCAAGCTGAGGTGCAGGA...TCGACTACAACCTTTACATCCACCACACACATGCCATTGAATCCTAACATCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp TCTGATGTTAGGATTCAATGGCATGTGTGTGGTGGATGTAAAGGTTGTAGTCGATCCACAGCCTCTTCCTaGACCTCAGCTTGCTCAGGC +
Preference number: 4 (lower is better)
Translates to: SDVRIQWHVCGGCKGCSRSTASS*TSACSG
Trigger: GCCTGAGCAAGCTGAGGTGCAGGAAGAGGCTGTGGA...TCGACTACAACCTTTACATCCACCACACACATGCCATTGAATCCTAACATCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp AAAACTAAACTGCCACAAAATCAAACCATTCTCTCTCCAGTACGGCTCCTAACCTCCACAGCCTCTTCCTaGACCTCAGCTTGCTCAGGC +
Preference number: 4 (lower is better)
Translates to: KTKLPQNQTILSPVRLLTSTASS*TSACSG
Trigger: GCCTGAGCAAGCTGAGGTGCAGGAAGAGGCTGTGGA...GGTTAGGAGCCGTACTGGAGAGAGAATGGTTTGATTTTGTGGCAGTTTAGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp TCTGATGTTAGGATTCAATGGCATGTGTGTGGTGGATGTAAAGGTTGTAGTCGATGCTGCTGCTGCTGCTaGGGCTGGGCTTCTTCCAAA +
Preference number: 4 (lower is better)
Translates to: SDVRIQWHVCGGCKGCSRCCCCC*GWASSK
Trigger: TTTGGAAGAAGCCCAGCCGCAGCAGCAGCAGCAGCA...TCGACTACAACCTTTACATCCACCACACACATGCCATTGAATCCTAACATCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp GGTCTTCAGTTGTGTATTTATTGTGAAAAAGAATTGGGTAGAATGTTCCCCTTGGGCTGCTGCTGCTGCTaGTGCGGCTGGGCTTCTTCC +
Preference number: 4 (lower is better)
Translates to: GLQLCIYCEKELGRMFPLGCCCC*CGWASS
Trigger: GGAAGAAGCCCAGCCGCAGCAGCAGCAGCAGCAGCC...CAAGGGGAACATTCTACCCAATTCTTTTTCACAATAAATACACAACTGAAGACC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp CTTCTATTACAAAGTATAATGAGGAGGAAAGGACATAGTCCCAGTCTGCTTTTTGGCTGCTGCTGCTGCTaGTGCGGCTGGGCTTCTTCC +
Preference number: 4 (lower is better)
Translates to: LLLQSIMRRKGHSPSLLFGCCCC*CGWASS
Trigger: GGAAGAAGCCCAGCCGCAGCAGCAGCAGCAGCAGCC...AAAAAGCAGACTGGGACTATGTCCTTTCCTCCTCATTATACTTTGTAATAGAAG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp GAGTCATTAGGAAAATCCAAATCTTCATTCATTTCTGGCACAAAGGTACCAGGAATGGGCTGCTGCTGCTaGTGCTGCGGCTGGGCTTCT +
Preference number: 4 (lower is better)
Translates to: ESLGKSKSSFISGTKVPGMGCCC*CCGWAS
Trigger: AGAAGCCCAGCCGCAGCAGCAGCAGCAGCAGCCCAT...TCCTGGTACCTTTGTGCCAGAAATGAATGAAGATTTGGATTTTCCTAATGACTC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp TCAAGCTCTGTTTCTTCACTAACACTTTGGCCTTCAAAGCCCAGCCCTGCATTGAAGGAGTTGTTCGTTTaGTTCCTCGGAGGCAGCTTC +
Preference number: 4 (lower is better)
Translates to: SSSVSSLTLWPSKPSPALKELFV*FLGGSF
Trigger: GAAGCTGCCTCCGAGGAAGCAAACGAACAACTCCTT...CAATGCAGGGCTGGGCTTTGAAGGCCAAAGTGTTAGTGAAGAAACAGAGCTTGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113052.8
CDS-3UTR CCA 90 bp AATCAAACCATTCTCTCTCCAGTACGGCTCCTAACCTGCCAAAATGTTCACACTGGGGGCCTGGACCTCTaGAGAAGTAGCTTTGTTGTC +
Preference number: 4 (lower is better)
Translates to: NQTILSPVRLLTCQNVHTGGLDL*RSSFVV
Trigger: GACAACAAAGCTACTTCTCCAGAGGTCCAGGCCCCC...AGTGTGAACATTTTGGCAGGTTAGGAGCCGTACTGGAGAGAGAATGGTTTGATT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp AAAACTAAACTGCCACAAAATCAAACCATTCTCTCTCCAGTACGGCTCCTAACCTCTAAGGCCTCATGCTaGGCCTGCTGTCCTTCGGCT +
Preference number: 4 (lower is better)
Translates to: KTKLPQNQTILSPVRLLTSKASC*ACCPSA
Trigger: AGCCGAAGGACAGCAGGCCCAGCATGAGGCCTTAGA...GGTTAGGAGCCGTACTGGAGAGAGAATGGTTTGATTTTGTGGCAGTTTAGTTTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TCTGATGTTAGGATTCAATGGCATGTGTGTGGTGGATGTAAAGGTTGTAGTCGATCTAAGGCCTCATGCTaGGCCTGCTGTCCTTCGGCT +
Preference number: 4 (lower is better)
Translates to: SDVRIQWHVCGGCKGCSRSKASC*ACCPSA
Trigger: AGCCGAAGGACAGCAGGCCCAGCATGAGGCCTTAGA...TCGACTACAACCTTTACATCCACCACACACATGCCATTGAATCCTAACATCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACATAGAGCTTGCTAGCCTGGCCCTGCCTTaGCTGTTCAGGTGCCCTGTC +
Preference number: 4 (lower is better)
Translates to: LQSLCKTDCTPLEYIELASLALP*LFRCPV
Trigger: GACAGGGCACCTGAACAGCCAAGGCAGGGCCAGGCT...AGCAAGCTCTATGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TCTGATGTTAGGATTCAATGGCATGTGTGTGGTGGATGTAAAGGTTGTAGTCGAAAAGGCAGGAGCACCTaGGCGTGCACTTGCACTACC +
Preference number: 4 (lower is better)
Translates to: SDVRIQWHVCGGCKGCSRKGRST*ACTCTT
Trigger: GGTAGTGCAAGTGCACGCCCAGGTGCTCCTGCCTTT...TCGACTACAACCTTTACATCCACCACACACATGCCATTGAATCCTAACATCAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TTGTCACCACGGGCACAGAGAAATCTCAGTTTCTTGATTGAGCGGCGCTTCAGCTGTGACAAATGCATTTaGTGCTCGAAGCAAGTCCCT +
Preference number: 4 (lower is better)
Translates to: LSPRAQRNLSFLIERRFSCDKCI*CSKQVP
Trigger: AGGGACTTGCTTCGAGCACCAAATGCATTTGTCACA...GCTGAAGCGCCGCTCAATCAAGAAACTGAGATTTCTCTGTGCCCGTGGTGACAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp GCTCCTAACCTGCCAAAATGTTCACACTTCCAACCAGGATTCTCATTAAAACTGTGCTGCTGCTGCGGCTaGGCTTCTTCCAAAGAAGGC +
Preference number: 4 (lower is better)
Translates to: APNLPKCSHFQPGFSLKLCCCCG*ASSKEG
Trigger: GCCTTCTTTGGAAGAAGCCCAGCCGCAGCAGCAGCA...CAGTTTTAATGAGAATCCTGGTTGGAAGTGTGAACATTTTGGCAGGTTAGGAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR CAA 72 bp TATGTCCTTCCACACGTCCAGGATCTTCTTAAGGAGTaGTTCGTTTGCTTCCTCGGAGGCAGCTTCAGCATT +
Preference number: 4 (lower is better)
Translates to: YVLPHVQDLLKE*FVCFLGGSFSI
Trigger: AATGCTGAAGCTGCCTCCGAGGAAGCAAACGAACAACTCCTTAAGAAGATCCTGGACGTGTGGAAGGACATA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp GAAATAGTTCTGAACCTCCAACATAGCAAGCTCCATTTCCTCAGCGATAAGGTAGGGTCCTCATCACAATaGATCACCTCTGGGGCCATC +
Preference number: 4 (lower is better)
Translates to: EIVLNLQHSKLHFLSDKVGSSSQ*ITSGAI
Trigger: GATGGCCCCAGAGGTGATTCATTGTGATGAGGACCC...TACCTTATCGCTGAGGAAATGGAGCTTGCTATGTTGGAGGTTCAGAACTATTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp GCCACAGAAGACGGTATGTCCTTCCACACGTCCAGGATCTTCTTAAGGAGTTGTATAATGCCTTTGCTCTaGACCTCTTGGGTCTTAGTC +
Preference number: 4 (lower is better)
Translates to: ATEDGMSFHTSRIFLRSCIMPLL*TSWVLV
Trigger: GACTAAGACCCAAGAGGTTCAGAGCAAAGGCATTAT...ACAACTCCTTAAGAAGATCCTGGACGTGTGGAAGGACATACCGTCTTCTGTGGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp AGTCCCAGTCTGCTTTTTCACCTGCCAAAGGCTATAAAACTCCCACACAGATTTAGGCAGCTTCAGCATTaGGGGAGAGCATCACACCAA +
Preference number: 4 (lower is better)
Translates to: SPSLLFHLPKAIKLPHRFRQLQH*GRASHQ
Trigger: TTGGTGTGATGCTCTCCCTCAATGCTGAAGCTGCCT...AAATCTGTGTGGGAGTTTTATAGCCTTTGGCAGGTGAAAAAGCAGACTGGGACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000113052.8
CDS-3UTR GCA 90 bp TCTGATGTTAGGATTCAATGGCATGTGTGTGGTGGATGTAAAGGTTGTAGTCGACTTGAGCATCTGGGCTaGTTTGCTTACTTGGGGCGG +
Preference number: 4 (lower is better)
Translates to: SDVRIQWHVCGGCKGCSRLEHLG*FAYLGR
Trigger: CCGCCCCAAGTAAGCAAAGCAGCCCAGATGCTCAAG...TCGACTACAACCTTTACATCCACCACACACATGCCATTGAATCCTAACATCAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp GAAATAGTTCTGAACCTCCAACATAGCAAGCTCCATTTCCTCAGCGATAAGGTACCTTGGCTGTTCAGGTaGCCTGTCTTGCCCCTGAAA +
Preference number: 4 (lower is better)
Translates to: EIVLNLQHSKLHFLSDKVPWLFR*PVLPLK
Trigger: TTTCAGGGGCAAGACAGGGCACCTGAACAGCCAAGG...TACCTTATCGCTGAGGAAATGGAGCTTGCTATGTTGGAGGTTCAGAACTATTTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp CAACCGGAAAAGTACTTCAAAGATCCCATTGAGAGTGTGTGGCATTACTTACTCCCTTGGCTGTTCAGGTaGCCTGTCTTGCCCCTGAAA +
Preference number: 4 (lower is better)
Translates to: QPEKYFKDPIESVWHYLLPWLFR*PVLPLK
Trigger: TTTCAGGGGCAAGACAGGGCACCTGAACAGCCAAGG...GAGTAAGTAATGCCACACACTCTCAATGGGATCTTTGAAGTACTTTTCCGGTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113052.8
CDS-3UTR GCA 90 bp AAATGTTCACACTTCCAACCAGGATTCTCATTAAAACTGGCTTTCTGGACTGCCGGATTATGTATCTGCTaGTGCTCAGCAGCCTGGCCC +
Preference number: 4 (lower is better)
Translates to: KCSHFQPGFSLKLAFWTAGLCIC*CSAAWP
Trigger: GGGCCAGGCTGCTGAGCAGCAGCAGATACATAATCC...GGCAGTCCAGAAAGCCAGTTTTAATGAGAATCCTGGTTGGAAGTGTGAACATTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp GGTCTTCAGTTGTGTATTTATTGTGAAAAAGAATTGGGTAGAATGTTCCCCTTGTTCATGGGCTGCTGCTaGTGCTGCTGCGGCTGGGCT +
Preference number: 4 (lower is better)
Translates to: GLQLCIYCEKELGRMFPLFMGCC*CCCGWA
Trigger: AGCCCAGCCGCAGCAGCAGCAGCAGCAGCCCATGAA...CAAGGGGAACATTCTACCCAATTCTTTTTCACAATAAATACACAACTGAAGACC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp TCTTCATTCATTTCTGGCACAAAGGTACCAGGAAATGATGTACTATCAGGAAATTTCATGGGCTGCTGCTaGTGCTGCTGCGGCTGGGCT +
Preference number: 4 (lower is better)
Translates to: SSFISGTKVPGNDVLSGNFMGCC*CCCGWA
Trigger: AGCCCAGCCGCAGCAGCAGCAGCAGCAGCCCATGAA...ATTTCCTGATAGTACATCATTTCCTGGTACCTTTGTGCCAGAAATGAATGAAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp AATGTTCCCCTTGATCTATGTAATTTTCTTTGCGCACACAGGTTGTTCAACCTTATGTTCATGGGCTGCTaGTGCTGCTGCTGCGGCTGG +
Preference number: 4 (lower is better)
Translates to: NVPLDLCNFLCAHRLFNLMFMGC*CCCCGW
Trigger: CCAGCCGCAGCAGCAGCAGCAGCAGCCCATGAACAT...AAGGTTGAACAACCTGTGTGCGCAAAGAAAATTACATAGATCAAGGGGAACATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp GAAATAGTTCTGAACCTCCAACATAGCAAGCTCCATTTCCTCAGCGATAAGGTAGCATCTGCTGCTGGTTaGCACTCTGAGAAGCTCAGG +
Preference number: 4 (lower is better)
Translates to: EIVLNLQHSKLHFLSDKVASAAG*HSEKLR
Trigger: CCTGAGCTTCTCAGAGTGCCAACCAGCAGCAGATGC...TACCTTATCGCTGAGGAAATGGAGCTTGCTATGTTGGAGGTTCAGAACTATTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TCTGATGTTAGGATTCAATGGCATGTGTGTGGTGGATGTAAAGGTTGTAGTCGAGGGGGCCTGGACCTCTaGAGAAGTAGCTTTGTTGTC +
Preference number: 4 (lower is better)
Translates to: SDVRIQWHVCGGCKGCSRGGLDL*RSSFVV
Trigger: GACAACAAAGCTACTTCTCCAGAGGTCCAGGCCCCC...TCGACTACAACCTTTACATCCACCACACACATGCCATTGAATCCTAACATCAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp GCCACAGAAGACGGTATGTCCTTCCACACGTCCAGGATCTTCTTAAGGAGTTGTCCCCTGAAATTCTTCTaGCACCTGGTCCAAATCTTT +
Preference number: 4 (lower is better)
Translates to: ATEDGMSFHTSRIFLRSCPLKFF*HLVQIF
Trigger: AAAGATTTGGACCAGGTGCCAGAAGAATTTCAGGGG...ACAACTCCTTAAGAAGATCCTGGACGTGTGGAAGGACATACCGTCTTCTGTGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp AGATTCTCTTTGCTATTTCCTGTGCTTGCTGGAATAAATGCCACAGAGAACAATTGCTGCTCAGCAGCCTaGCCCTGCCTTGGCTGTTCA +
Preference number: 4 (lower is better)
Translates to: RFSLLFPVLAGINATENNCCSAA*PCLGCS
Trigger: TGAACAGCCAAGGCAGGGCCAGGCTGCTGAGCAGCA...ATTGTTCTCTGTGGCATTTATTCCAGCAAGCACAGGAAATAGCAAAGAGAATCT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp GAAATAGTTCTGAACCTCCAACATAGCAAGCTCCATTTCCTCAGCGATAAGGTACTCGAAGCAAGTCCCTaGATAGTCCCTCGATCAGCG +
Preference number: 4 (lower is better)
Translates to: EIVLNLQHSKLHFLSDKVLEASP*IVPRSA
Trigger: CGCTGATCGAGGGACTATCCAGGGACTTGCTTCGAG...TACCTTATCGCTGAGGAAATGGAGCTTGCTATGTTGGAGGTTCAGAACTATTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TCTGTTTCTTCACTAACACTTTGGCCTTCAAAGCCCAGCCCTGCATTGGTAATCGGCGCCGTCTCCTGCTaGTTTCTACATCTGAGAATT +
Preference number: 4 (lower is better)
Translates to: SVSSLTLWPSKPSPALVIGAVSC*FLHLRI
Trigger: AATTCTCAGATGTAGAAACCAGCAGGAGACGGCGCC...GATTACCAATGCAGGGCTGGGCTTTGAAGGCCAAAGTGTTAGTGAAGAAACAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp AATCAAACCATTCTCTCTCCAGTACGGCTCCTAACCTGCCAAAATGTTCACACTTCCTCACTACATCAGTaGCTGAGCCTGCTGCACATA +
Preference number: 4 (lower is better)
Translates to: NQTILSPVRLLTCQNVHTSSLHQ*LSLLHI
Trigger: TATGTGCAGCAGGCTCAGTCACTGATGTAGTGAGGA...AGTGTGAACATTTTGGCAGGTTAGGAGCCGTACTGGAGAGAGAATGGTTTGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp GAGTCATTAGGAAAATCCAAATCTTCATTCATTTCTGGCACAAAGGTACCAGGACTCCATGCAGGACTCTaGGTGGTCTGCATCTGCTGC +
Preference number: 4 (lower is better)
Translates to: ESLGKSKSSFISGTKVPGLHAGL*VVCICC
Trigger: GCAGCAGATGCAGACCACTCAGAGTCCTGCATGGAG...TCCTGGTACCTTTGTGCCAGAAATGAATGAAGATTTGGATTTTCCTAATGACTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp GAAATAGTTCTGAACCTCCAACATAGCAAGCTCCATTTCCTCAGCGATAAGGTAGCCTTCTGCAGTTGTTaGAGTTCTTGGTCCTGTGGG +
Preference number: 4 (lower is better)
Translates to: EIVLNLQHSKLHFLSDKVAFCSC*SSWSCG
Trigger: CCCACAGGACCAAGAACTTCAACAACTGCAGAAGGC...TACCTTATCGCTGAGGAAATGGAGCTTGCTATGTTGGAGGTTCAGAACTATTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp GATAAAATTCTGATGTTAGGATTCAATGGCATGTGTGTGGTGGATGTAAAGGTTGTCCTGAGTGGGGAGTaGCTTGAGCATCTGGGCTGC +
Preference number: 4 (lower is better)
Translates to: DKILMLGFNGMCVVDVKVVLSGE*LEHLGC
Trigger: GCAGCCCAGATGCTCAAGTCACTCCCCACTCAGGAC...AACCTTTACATCCACCACACACATGCCATTGAATCCTAACATCAGAATTTTATC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp CTTCTATTACAAAGTATAATGAGGAGGAAAGGACATAGTCCCAGTCTGCTTTTTGTCCTGAGTGGGGAGTaGCTTGAGCATCTGGGCTGC +
Preference number: 4 (lower is better)
Translates to: LLLQSIMRRKGHSPSLLFVLSGE*LEHLGC
Trigger: GCAGCCCAGATGCTCAAGTCACTCCCCACTCAGGAC...AAAAAGCAGACTGGGACTATGTCCTTTCCTCCTCATTATACTTTGTAATAGAAG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp GAAATAGTTCTGAACCTCCAACATAGCAAGCTCCATTTCCTCAGCGATAAGGTAAGCTGCTCCACGACTTaGATCTGCCGGAATGGTCTT +
Preference number: 4 (lower is better)
Translates to: EIVLNLQHSKLHFLSDKVSCSTT*ICRNGL
Trigger: AAGACCATTCCGGCAGATTCAAGTCGTGGAGCAGCT...TACCTTATCGCTGAGGAAATGGAGCTTGCTATGTTGGAGGTTCAGAACTATTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp AATCAAACCATTCTCTCTCCAGTACGGCTCCTAACCTGCCAAAATGTTCACACTCTCAGCCAAGACAGATaGTACACGCGAAGTCTGTTC +
Preference number: 4 (lower is better)
Translates to: NQTILSPVRLLTCQNVHTLSQDR*YTRSLF
Trigger: GAACAGACTTCGCGTGTATCATCTGTCTTGGCTGAG...AGTGTGAACATTTTGGCAGGTTAGGAGCCGTACTGGAGAGAGAATGGTTTGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp AATCAAACCATTCTCTCTCCAGTACGGCTCCTAACCTGCCAAAATGTTCACACTTCCGTCCATTTGTTCTaGTCACTTGGGCACTCACTC +
Preference number: 4 (lower is better)
Translates to: NQTILSPVRLLTCQNVHTSVHLF*SLGHSL
Trigger: GAGTGAGTGCCCAAGTGAGCAGAACAAATGGACGGA...AGTGTGAACATTTTGGCAGGTTAGGAGCCGTACTGGAGAGAGAATGGTTTGATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp GAAATAGTTCTGAACCTCCAACATAGCAAGCTCCATTTCCTCAGCGATAAGGTAACCGGATTATGTATCTaGTGCTGCTCAGCAGCCTGG +
Preference number: 4 (lower is better)
Translates to: EIVLNLQHSKLHFLSDKVTGLCI*CCSAAW
Trigger: CCAGGCTGCTGAGCAGCAGCAGATACATAATCCGGT...TACCTTATCGCTGAGGAAATGGAGCTTGCTATGTTGGAGGTTCAGAACTATTTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp TTGTCACCACGGGCACAGAGAAATCTCAGTTTCTTGATTGAGCGGCGCTTCAGCTGGTTTTGTGACAAATaGATTTGGTGCTCGAAGCAA +
Preference number: 4 (lower is better)
Translates to: LSPRAQRNLSFLIERRFSWFCDK*IWCSKQ
Trigger: TTGCTTCGAGCACCAAATGCATTTGTCACAAAACCA...GCTGAAGCGCCGCTCAATCAAGAAACTGAGATTTCTCTGTGCCCGTGGTGACAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp TTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACATAGAGCTTGCTTGCTGCTGCTGCTGCTaGGGCTGGGCTTCTTCCAAA +
Preference number: 4 (lower is better)
Translates to: LQSLCKTDCTPLEYIELACCCCC*GWASSK
Trigger: TTTGGAAGAAGCCCAGCCGCAGCAGCAGCAGCAGCA...AGCAAGCTCTATGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp TTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTAGATTCATGGGCTGCTGCTaGTGCTGCTGCGGCTGGGCT +
Preference number: 4 (lower is better)
Translates to: LKIIILLAHSSDLRSRARFMGCC*CCCGWA
Trigger: AGCCCAGCCGCAGCAGCAGCAGCAGCAGCCCATGAA...TCTAGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp AGTTTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTCGGATGTTCATGGGCTaGTGCTGCTGCTGCTGCGGC +
Preference number: 4 (lower is better)
Translates to: SLKIIILLAHSSDLRSRARMFMG*CCCCCG
Trigger: GCCGCAGCAGCAGCAGCAGCAGCCCATGAACATCCG...AGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAAACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp GTAGCAGTTACCATAGGTGAGGAAATATCACCTATTTTTGGCGTCTATAAAATAAGCCTGGCCCTGCCTTaGCTGTTCAGGTGCCCTGTC +
Preference number: 4 (lower is better)
Translates to: VAVTIGEEISPIFGVYKISLALP*LFRCPV
Trigger: GACAGGGCACCTGAACAGCCAAGGCAGGGCCAGGCT...TATTTTATAGACGCCAAAAATAGGTGATATTTCCTCACCTATGGTAACTGCTAC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACATAGAGCTTGCTTGCTGCTGCTGCGGCTaGGCTTCTTCCAAAGAAGGC +
Preference number: 4 (lower is better)
Translates to: LQSLCKTDCTPLEYIELACCCCG*ASSKEG
Trigger: GCCTTCTTTGGAAGAAGCCCAGCCGCAGCAGCAGCA...AGCAAGCTCTATGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TCTGTTTCTTCACTAACACTTTGGCCTTCAAAGCCCAGCCCTGCATTGGTAATCCAGGTCAACTGTCAGTaGCTTAAGATCACGAGTTGG +
Preference number: 4 (lower is better)
Translates to: SVSSLTLWPSKPSPALVIQVNCQ*LKITSW
Trigger: CCAACTCGTGATCTTAAGCCACTGACAGTTGACCTG...GATTACCAATGCAGGGCTGGGCTTTGAAGGCCAAAGTGTTAGTGAAGAAACAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113052.8
CDS-3UTR TCA 90 bp GCTCCTAACCTGCCAAAATGTTCACACTTCCAACCAGGATTCTCATTAAAACTGTCCTCACTACATCAGTaGCTGAGCCTGCTGCACATA +
Preference number: 4 (lower is better)
Translates to: APNLPKCSHFQPGFSLKLSSLHQ*LSLLHI
Trigger: TATGTGCAGCAGGCTCAGTCACTGATGTAGTGAGGA...CAGTTTTAATGAGAATCCTGGTTGGAAGTGTGAACATTTTGGCAGGTTAGGAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp GGTCTTCAGTTGTGTATTTATTGTGAAAAAGAATTGGGTAGAATGTTCCCCTTGCTCCATGCAGGACTCTaGGTGGTCTGCATCTGCTGC +
Preference number: 4 (lower is better)
Translates to: GLQLCIYCEKELGRMFPLLHAGL*VVCICC
Trigger: GCAGCAGATGCAGACCACTCAGAGTCCTGCATGGAG...CAAGGGGAACATTCTACCCAATTCTTTTTCACAATAAATACACAACTGAAGACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp TCTTCAGATTTGAGAAGCAGAGCTAGAGGACTTATTGAGGTATACTTTGTGGTATCCTGTGGGTCTTCTTaGTCAGGTAGCCACCTTGGC +
Preference number: 4 (lower is better)
Translates to: SSDLRSRARGLIEVYFVVSCGSS*SGSHLG
Trigger: GCCAAGGTGGCTACCTGATCAAGAAGACCCACAGGA...TACCACAAAGTATACCTCAATAAGTCCTCTAGCTCTGCTTCTCAAATCTGAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp GGTCTTCAGTTGTGTATTTATTGTGAAAAAGAATTGGGTAGAATGTTCCCCTTGGAGTGGGGAGTGACTTaGGCATCTGGGCTGCTTTGC +
Preference number: 4 (lower is better)
Translates to: GLQLCIYCEKELGRMFPLEWGVT*ASGLLC
Trigger: GCAAAGCAGCCCAGATGCTCAAGTCACTCCCCACTC...CAAGGGGAACATTCTACCCAATTCTTTTTCACAATAAATACACAACTGAAGACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp GAGTCATTAGGAAAATCCAAATCTTCATTCATTTCTGGCACAAAGGTACCAGGACTTGAGCATCTGGGCTaGTTTGCTTACTTGGGGCGG +
Preference number: 4 (lower is better)
Translates to: ESLGKSKSSFISGTKVPGLEHLG*FAYLGR
Trigger: CCGCCCCAAGTAAGCAAAGCAGCCCAGATGCTCAAG...TCCTGGTACCTTTGTGCCAGAAATGAATGAAGATTTGGATTTTCCTAATGACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp GATAAAATTCTGATGTTAGGATTCAATGGCATGTGTGTGGTGGATGTAAAGGTTTCCACAGCCTCTTCCTaGACCTCAGCTTGCTCAGGC +
Preference number: 4 (lower is better)
Translates to: DKILMLGFNGMCVVDVKVSTASS*TSACSG
Trigger: GCCTGAGCAAGCTGAGGTGCAGGAAGAGGCTGTGGA...AACCTTTACATCCACCACACACATGCCATTGAATCCTAACATCAGAATTTTATC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp AAATGTTCACACTTCCAACCAGGATTCTCATTAAAACTGGCTTTCTGGACTGCCATGGACCTCATTTCCTaGAGGATTTGCAGCGTGTGG +
Preference number: 4 (lower is better)
Translates to: KCSHFQPGFSLKLAFWTAMDLIS*RICSVW
Trigger: CCACACGCTGCAAATCCTGCAGGAAATGAGGTCCAT...GGCAGTCCAGAAAGCCAGTTTTAATGAGAATCCTGGTTGGAAGTGTGAACATTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp GCTCCTAACCTGCCAAAATGTTCACACTTCCAACCAGGATTCTCATTAAAACTGATGGACCTCATTTCCTaGAGGATTTGCAGCGTGTGG +
Preference number: 4 (lower is better)
Translates to: APNLPKCSHFQPGFSLKLMDLIS*RICSVW
Trigger: CCACACGCTGCAAATCCTGCAGGAAATGAGGTCCAT...CAGTTTTAATGAGAATCCTGGTTGGAAGTGTGAACATTTTGGCAGGTTAGGAGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp GTAGCAGTTACCATAGGTGAGGAAATATCACCTATTTTTGGCGTCTATAAAATAATGTTCATGGGCTGCTaGTGCTGCTGCTGCGGCTGG +
Preference number: 4 (lower is better)
Translates to: VAVTIGEEISPIFGVYKIMFMGC*CCCCGW
Trigger: CCAGCCGCAGCAGCAGCAGCAGCAGCCCATGAACAT...TATTTTATAGACGCCAAAAATAGGTGATATTTCCTCACCTATGGTAACTGCTAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp TTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTAGAATGTTCATGGGCTGCTaGTGCTGCTGCTGCGGCTGG +
Preference number: 4 (lower is better)
Translates to: LKIIILLAHSSDLRSRARMFMGC*CCCCGW
Trigger: CCAGCCGCAGCAGCAGCAGCAGCAGCCCATGAACAT...TCTAGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp AATCAAACCATTCTCTCTCCAGTACGGCTCCTAACCTGCCAAAATGTTCACACTTGTTACCTCTTCCATTaGCCCTATTGGCTCCATGGT +
Preference number: 4 (lower is better)
Translates to: NQTILSPVRLLTCQNVHTCYLFH*PYWLHG
Trigger: ACCATGGAGCCAATAGGGGCAATGGAAGAGGTAACA...AGTGTGAACATTTTGGCAGGTTAGGAGCCGTACTGGAGAGAGAATGGTTTGATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp TCTGATGTTAGGATTCAATGGCATGTGTGTGGTGGATGTAAAGGTTGTAGTCGAAAGGAGTTGTTCGTTTaGTTCCTCGGAGGCAGCTTC +
Preference number: 4 (lower is better)
Translates to: SDVRIQWHVCGGCKGCSRKELFV*FLGGSF
Trigger: GAAGCTGCCTCCGAGGAAGCAAACGAACAACTCCTT...TCGACTACAACCTTTACATCCACCACACACATGCCATTGAATCCTAACATCAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
CDS-3UTR CCA 90 bp TCTTCAGATTTGAGAAGCAGAGCTAGAGGACTTATTGAGGTATACTTTGTGGTAGGGGGCCTGGACCTCTaGAGAAGTAGCTTTGTTGTC +
Preference number: 4 (lower is better)
Translates to: SSDLRSRARGLIEVYFVVGGLDL*RSSFVV
Trigger: GACAACAAAGCTACTTCTCCAGAGGTCCAGGCCCCC...TACCACAAAGTATACCTCAATAAGTCCTCTAGCTCTGCTTCTCAAATCTGAAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp AGTTTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTTCGGCTACGGGGGCCTaGACCTCTGGAGAAGTAGCT +
Preference number: 4 (lower is better)
Translates to: SLKIIILLAHSSDLRSRASATGA*TSGEVA
Trigger: AGCTACTTCTCCAGAGGTCCAGGCCCCCGTAGCCGA...AGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAAACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TCTTCATTCATTTCTGGCACAAAGGTACCAGGAAATGATGTACTATCAGGAAATTCTAAGGCCTCATGCTaGGCCTGCTGTCCTTCGGCT +
Preference number: 4 (lower is better)
Translates to: SSFISGTKVPGNDVLSGNSKASC*ACCPSA
Trigger: AGCCGAAGGACAGCAGGCCCAGCATGAGGCCTTAGA...ATTTCCTGATAGTACATCATTTCCTGGTACCTTTGTGCCAGAAATGAATGAAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp AGTAACAAAAGTTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACATGCTGCTCAGCAGCCTaGCCCTGCCTTGGCTGTTCA +
Preference number: 4 (lower is better)
Translates to: SNKSYKVCAKQIVHHWSTCCSAA*PCLGCS
Trigger: TGAACAGCCAAGGCAGGGCCAGGCTGCTGAGCAGCA...TGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAACTTTTGTTACT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TCCAAATCTTCATTCATTTCTGGCACAAAGGTACCAGGAAATGATGTACTATCAAAAGGCAGGAGCACCTaGGCGTGCACTTGCACTACC +
Preference number: 4 (lower is better)
Translates to: SKSSFISGTKVPGNDVLSKGRST*ACTCTT
Trigger: GGTAGTGCAAGTGCACGCCCAGGTGCTCCTGCCTTT...TGATAGTACATCATTTCCTGGTACCTTTGTGCCAGAAATGAATGAAGATTTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACATAGAGCTTGCTCTCGAAGCAAGTCCCTaGATAGTCCCTCGATCAGCG +
Preference number: 4 (lower is better)
Translates to: LQSLCKTDCTPLEYIELALEASP*IVPRSA
Trigger: CGCTGATCGAGGGACTATCCAGGGACTTGCTTCGAG...AGCAAGCTCTATGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp GGTCTTCAGTTGTGTATTTATTGTGAAAAAGAATTGGGTAGAATGTTCCCCTTGTGCTGCTGCTGCGGCTaGGCTTCTTCCAAAGAAGGC +
Preference number: 4 (lower is better)
Translates to: GLQLCIYCEKELGRMFPLCCCCG*ASSKEG
Trigger: GCCTTCTTTGGAAGAAGCCCAGCCGCAGCAGCAGCA...CAAGGGGAACATTCTACCCAATTCTTTTTCACAATAAATACACAACTGAAGACC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACATAGAGCTTGCTTCACCGGCAGCTCCATaGAAAGCTCTGGCTGCATTG +
Preference number: 4 (lower is better)
Translates to: LQSLCKTDCTPLEYIELASPAAP*KALAAL
Trigger: CAATGCAGCCAGAGCTTTCCATGGAGCTGCCGGTGA...AGCAAGCTCTATGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp AATGTTCCCCTTGATCTATGTAATTTTCTTTGCGCACACAGGTTGTTCAACCTTTCACCGGCAGCTCCATaGAAAGCTCTGGCTGCATTG +
Preference number: 4 (lower is better)
Translates to: NVPLDLCNFLCAHRLFNLSPAAP*KALAAL
Trigger: CAATGCAGCCAGAGCTTTCCATGGAGCTGCCGGTGA...AAGGTTGAACAACCTGTGTGCGCAAAGAAAATTACATAGATCAAGGGGAACATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TCTGTTTCTTCACTAACACTTTGGCCTTCAAAGCCCAGCCCTGCATTGGTAATCCTTCATTCCTTCCATTaGCCTCCCTGTTTCTGTTAC +
Preference number: 4 (lower is better)
Translates to: SVSSLTLWPSKPSPALVILHSFH*PPCFCY
Trigger: GTAACAGAAACAGGGAGGCCAATGGAAGGAATGAAG...GATTACCAATGCAGGGCTGGGCTTTGAAGGCCAAAGTGTTAGTGAAGAAACAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp GAGTCATTAGGAAAATCCAAATCTTCATTCATTTCTGGCACAAAGGTACCAGGAATCCAAAGTTGGTGCTaGTGGCCAGGAGGATTCAGC +
Preference number: 4 (lower is better)
Translates to: ESLGKSKSSFISGTKVPGIQSWC*WPGGFS
Trigger: GCTGAATCCTCCTGGCCATCAGCACCAACTTTGGAT...TCCTGGTACCTTTGTGCCAGAAATGAATGAAGATTTGGATTTTCCTAATGACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp AGTAACAAAAGTTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACACTCCATGCAGGACTCTaGGTGGTCTGCATCTGCTGC +
Preference number: 4 (lower is better)
Translates to: SNKSYKVCAKQIVHHWSTLHAGL*VVCICC
Trigger: GCAGCAGATGCAGACCACTCAGAGTCCTGCATGGAG...TGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAACTTTTGTTACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp GTAGCAGTTACCATAGGTGAGGAAATATCACCTATTTTTGGCGTCTATAAAATAGAGTGGGGAGTGACTTaGGCATCTGGGCTGCTTTGC +
Preference number: 4 (lower is better)
Translates to: VAVTIGEEISPIFGVYKIEWGVT*ASGLLC
Trigger: GCAAAGCAGCCCAGATGCTCAAGTCACTCCCCACTC...TATTTTATAGACGCCAAAAATAGGTGATATTTCCTCACCTATGGTAACTGCTAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp TTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACATAGAGCTTGCTAGCTGCTCCACGACTTaGATCTGCCGGAATGGTCTT +
Preference number: 4 (lower is better)
Translates to: LQSLCKTDCTPLEYIELASCSTT*ICRNGL
Trigger: AAGACCATTCCGGCAGATTCAAGTCGTGGAGCAGCT...AGCAAGCTCTATGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp GAGCTCTTCAAGTTTTCCAAGGCTCATAAGGTAAACCCGGCTGTGGTCATTGCTGTTGTTTCTTCATGTTaGAGGACACTGAAGTGTTCA +
Preference number: 4 (lower is better)
Translates to: ELFKFSKAHKVNPAVVIAVVSSC*RTLKCS
Trigger: TGAACACTTCAGTGTCCTTCAACATGAAGAAACAAC...AGCAATGACCACAGCCGGGTTTACCTTATGAGCCTTGGAAAACTTGAAGAGCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp TCTGATGTTAGGATTCAATGGCATGTGTGTGGTGGATGTAAAGGTTGTAGTCGACTTCAGTGTTTTCTCTaGACCAACAGCCAGGTCAAC +
Preference number: 4 (lower is better)
Translates to: SDVRIQWHVCGGCKGCSRLQCFL*TNSQVN
Trigger: GTTGACCTGGCTGTTGGTTCAGAGAAAACACTGAAG...TCGACTACAACCTTTACATCCACCACACACATGCCATTGAATCCTAACATCAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
CDS-3UTR GCA 90 bp TCTTCATTCATTTCTGGCACAAAGGTACCAGGAAATGATGTACTATCAGGAAATGGATTATGTATCTGCTaGTGCTCAGCAGCCTGGCCC +
Preference number: 4 (lower is better)
Translates to: SSFISGTKVPGNDVLSGNGLCIC*CSAAWP
Trigger: GGGCCAGGCTGCTGAGCAGCAGCAGATACATAATCC...ATTTCCTGATAGTACATCATTTCCTGGTACCTTTGTGCCAGAAATGAATGAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp AATGTTCCCCTTGATCTATGTAATTTTCTTTGCGCACACAGGTTGTTCAACCTTACCGGATTATGTATCTaGTGCTGCTCAGCAGCCTGG +
Preference number: 4 (lower is better)
Translates to: NVPLDLCNFLCAHRLFNLTGLCI*CCSAAW
Trigger: CCAGGCTGCTGAGCAGCAGCAGATACATAATCCGGT...AAGGTTGAACAACCTGTGTGCGCAAAGAAAATTACATAGATCAAGGGGAACATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp TTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTAGATCCTGCACCTCAGCTTaGTCAGGCTCCCTATCCTCC +
Preference number: 4 (lower is better)
Translates to: LKIIILLAHSSDLRSRARSCTSA*SGSLSS
Trigger: GGAGGATAGGGAGCCTGAGCAAGCTGAGGTGCAGGA...TCTAGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp TTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTAGATGCTGCTGCTGCTGCTaGGGCTGGGCTTCTTCCAAA +
Preference number: 4 (lower is better)
Translates to: LKIIILLAHSSDLRSRARCCCCC*GWASSK
Trigger: TTTGGAAGAAGCCCAGCCGCAGCAGCAGCAGCAGCA...TCTAGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp TCTTCATTCATTTCTGGCACAAAGGTACCAGGAAATGATGTACTATCAGGAAATATGGTTTCCAAAGGCTaGACCTGCTTCACCGGCAGC +
Preference number: 4 (lower is better)
Translates to: SSFISGTKVPGNDVLSGNMVSKG*TCFTGS
Trigger: GCTGCCGGTGAAGCAGGTGCAGCCTTTGGAAACCAT...ATTTCCTGATAGTACATCATTTCCTGGTACCTTTGTGCCAGAAATGAATGAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp TCTGTTTCTTCACTAACACTTTGGCCTTCAAAGCCCAGCCCTGCATTGGTAATCTTCCTCATCGCCTTCTaGCTTTTCTTACTCTTTGGA +
Preference number: 4 (lower is better)
Translates to: SVSSLTLWPSKPSPALVIFLIAF*LFLLFG
Trigger: TCCAAAGAGTAAGAAAAGGCAGAAGGCGATGAGGAA...GATTACCAATGCAGGGCTGGGCTTTGAAGGCCAAAGTGTTAGTGAAGAAACAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp AATCAAACCATTCTCTCTCCAGTACGGCTCCTAACCTGCCAAAATGTTCACACTTTTGTTCTGCTCACTTaGGCACTCACTCCAAAATCC +
Preference number: 4 (lower is better)
Translates to: NQTILSPVRLLTCQNVHTFVLLT*ALTPKS
Trigger: GGATTTTGGAGTGAGTGCCCAAGTGAGCAGAACAAA...AGTGTGAACATTTTGGCAGGTTAGGAGCCGTACTGGAGAGAGAATGGTTTGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TCCAAATCTTCATTCATTTCTGGCACAAAGGTACCAGGAAATGATGTACTATCAGCATCTGCTGCTGGTTaGCACTCTGAGAAGCTCAGG +
Preference number: 4 (lower is better)
Translates to: SKSSFISGTKVPGNDVLSASAAG*HSEKLR
Trigger: CCTGAGCTTCTCAGAGTGCCAACCAGCAGCAGATGC...TGATAGTACATCATTTCCTGGTACCTTTGTGCCAGAAATGAATGAAGATTTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp AATGTTCCCCTTGATCTATGTAATTTTCTTTGCGCACACAGGTTGTTCAACCTTATGCAGGACTCTGAGTaGTCTGCATCTGCTGCTGGT +
Preference number: 4 (lower is better)
Translates to: NVPLDLCNFLCAHRLFNLMQDSE*SASAAG
Trigger: ACCAGCAGCAGATGCAGACCACTCAGAGTCCTGCAT...AAGGTTGAACAACCTGTGTGCGCAAAGAAAATTACATAGATCAAGGGGAACATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TCTTCAGATTTGAGAAGCAGAGCTAGAGGACTTATTGAGGTATACTTTGTGGTAATGCAGGACTCTGAGTaGTCTGCATCTGCTGCTGGT +
Preference number: 4 (lower is better)
Translates to: SSDLRSRARGLIEVYFVVMQDSE*SASAAG
Trigger: ACCAGCAGCAGATGCAGACCACTCAGAGTCCTGCAT...TACCACAAAGTATACCTCAATAAGTCCTCTAGCTCTGCTTCTCAAATCTGAAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TCAAGCTCTGTTTCTTCACTAACACTTTGGCCTTCAAAGCCCAGCCCTGCATTGGCTTTGGGAAAAGCTTaGATGTATTGTCCTGAGAAT +
Preference number: 4 (lower is better)
Translates to: SSSVSSLTLWPSKPSPALALGKA*MYCPEN
Trigger: ATTCTCAGGACAATACATCCAAGCTTTTCCCAAAGC...CAATGCAGGGCTGGGCTTTGAAGGCCAAAGTGTTAGTGAAGAAACAGAGCTTGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp GCTCCTAACCTGCCAAAATGTTCACACTTCCAACCAGGATTCTCATTAAAACTGAGTGACTTGAGCATCTaGGCTGCTTTGCTTACTTGG +
Preference number: 4 (lower is better)
Translates to: APNLPKCSHFQPGFSLKLSDLSI*AALLTW
Trigger: CCAAGTAAGCAAAGCAGCCCAGATGCTCAAGTCACT...CAGTTTTAATGAGAATCCTGGTTGGAAGTGTGAACATTTTGGCAGGTTAGGAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp AGTCCCAGTCTGCTTTTTCACCTGCCAAAGGCTATAAAACTCCCACACAGATTTCCCCTGAAATTCTTCTaGCACCTGGTCCAAATCTTT +
Preference number: 4 (lower is better)
Translates to: SPSLLFHLPKAIKLPHRFPLKFF*HLVQIF
Trigger: AAAGATTTGGACCAGGTGCCAGAAGAATTTCAGGGG...AAATCTGTGTGGGAGTTTTATAGCCTTTGGCAGGTGAAAAAGCAGACTGGGACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp GTAGCAGTTACCATAGGTGAGGAAATATCACCTATTTTTGGCGTCTATAAAATAAAAGGCAGGAGCACCTaGGCGTGCACTTGCACTACC +
Preference number: 4 (lower is better)
Translates to: VAVTIGEEISPIFGVYKIKGRST*ACTCTT
Trigger: GGTAGTGCAAGTGCACGCCCAGGTGCTCCTGCCTTT...TATTTTATAGACGCCAAAAATAGGTGATATTTCCTCACCTATGGTAACTGCTAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp GATAAAATTCTGATGTTAGGATTCAATGGCATGTGTGTGGTGGATGTAAAGGTTCTCGAAGCAAGTCCCTaGATAGTCCCTCGATCAGCG +
Preference number: 4 (lower is better)
Translates to: DKILMLGFNGMCVVDVKVLEASP*IVPRSA
Trigger: CGCTGATCGAGGGACTATCCAGGGACTTGCTTCGAG...AACCTTTACATCCACCACACACATGCCATTGAATCCTAACATCAGAATTTTATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp GCTCCTAACCTGCCAAAATGTTCACACTTCCAACCAGGATTCTCATTAAAACTGCTCCATGGAAAGCTCTaGCTGCATTGTCTCCAAAGA +
Preference number: 4 (lower is better)
Translates to: APNLPKCSHFQPGFSLKLLHGKL*LHCLQR
Trigger: TCTTTGGAGACAATGCAGCCAGAGCTTTCCATGGAG...CAGTTTTAATGAGAATCCTGGTTGGAAGTGTGAACATTTTGGCAGGTTAGGAGC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp GATAAAATTCTGATGTTAGGATTCAATGGCATGTGTGTGGTGGATGTAAAGGTTTCACCGGCAGCTCCATaGAAAGCTCTGGCTGCATTG +
Preference number: 4 (lower is better)
Translates to: DKILMLGFNGMCVVDVKVSPAAP*KALAAL
Trigger: CAATGCAGCCAGAGCTTTCCATGGAGCTGCCGGTGA...AACCTTTACATCCACCACACACATGCCATTGAATCCTAACATCAGAATTTTATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TCAAGCTCTGTTTCTTCACTAACACTTTGGCCTTCAAAGCCCAGCCCTGCATTGCTCATGTTCAAACTCTaGAAATACATGTTGATCCCG +
Preference number: 4 (lower is better)
Translates to: SSSVSSLTLWPSKPSPALLMFKL*KYMLIP
Trigger: CGGGATCAACATGTATTTCCAGAGTTTGAACATGAG...CAATGCAGGGCTGGGCTTTGAAGGCCAAAGTGTTAGTGAAGAAACAGAGCTTGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR CAA 72 bp GGGCTTCTCATTGGCCAGCAAGCTCTAGAGATCTACTaGTCTATCCTCTTAGCACAGGAATTGAAAGTATTC +
Preference number: 4 (lower is better)
Translates to: GLLIGQQALEIY*SILLAQELKVF
Trigger: GAATACTTTCAATTCCTGTGCTAAGAGGATAGACAAGTAGATCTCTAGAGCTTGCTGGCCAATGAGAAGCCC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113052.8
CDS-3UTR TCA 90 bp GATAAAATTCTGATGTTAGGATTCAATGGCATGTGTGTGGTGGATGTAAAGGTTATCCAAAGTTGGTGCTaGTGGCCAGGAGGATTCAGC +
Preference number: 4 (lower is better)
Translates to: DKILMLGFNGMCVVDVKVIQSWC*WPGGFS
Trigger: GCTGAATCCTCCTGGCCATCAGCACCAACTTTGGAT...AACCTTTACATCCACCACACACATGCCATTGAATCCTAACATCAGAATTTTATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp AGTTTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTGGGTCCTCATCACAATaGATCACCTCTGGGGCCATC +
Preference number: 4 (lower is better)
Translates to: SLKIIILLAHSSDLRSRAGSSSQ*ITSGAI
Trigger: GATGGCCCCAGAGGTGATTCATTGTGATGAGGACCC...AGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAAACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp AATGTTCCCCTTGATCTATGTAATTTTCTTTGCGCACACAGGTTGTTCAACCTTTGCCCAGCAACAAATTaGCTCCCCACAAAGAACCAC +
Preference number: 4 (lower is better)
Translates to: NVPLDLCNFLCAHRLFNLCPATN*LPTKNH
Trigger: GTGGTTCTTTGTGGGGAGTCAATTTGTTGCTGGGCA...AAGGTTGAACAACCTGTGTGCGCAAAGAAAATTACATAGATCAAGGGGAACATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp TCTTCAGATTTGAGAAGCAGAGCTAGAGGACTTATTGAGGTATACTTTGTGGTATCCATCAGATACAGATaGGATTGGGTGCCCAGCAAC +
Preference number: 4 (lower is better)
Translates to: SSDLRSRARGLIEVYFVVSIRYR*DWVPSN
Trigger: GTTGCTGGGCACCCAATCTCATCTGTATCTGATGGA...TACCACAAAGTATACCTCAATAAGTCCTCTAGCTCTGCTTCTCAAATCTGAAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp TCTTCATTCATTTCTGGCACAAAGGTACCAGGAAATGATGTACTATCAGGAAATAGCTGCTCCACGACTTaGATCTGCCGGAATGGTCTT +
Preference number: 4 (lower is better)
Translates to: SSFISGTKVPGNDVLSGNSCSTT*ICRNGL
Trigger: AAGACCATTCCGGCAGATTCAAGTCGTGGAGCAGCT...ATTTCCTGATAGTACATCATTTCCTGGTACCTTTGTGCCAGAAATGAATGAAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp GATAAAATTCTGATGTTAGGATTCAATGGCATGTGTGTGGTGGATGTAAAGGTTAGGCAGCTTCAGCATTaGGGGAGAGCATCACACCAA +
Preference number: 4 (lower is better)
Translates to: DKILMLGFNGMCVVDVKVRQLQH*GRASHQ
Trigger: TTGGTGTGATGCTCTCCCTCAATGCTGAAGCTGCCT...AACCTTTACATCCACCACACACATGCCATTGAATCCTAACATCAGAATTTTATC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
CDS-3UTR GCA 90 bp GAGTCATTAGGAAAATCCAAATCTTCATTCATTTCTGGCACAAAGGTACCAGGATCCGTCCATTTGTTCTaGTCACTTGGGCACTCACTC +
Preference number: 4 (lower is better)
Translates to: ESLGKSKSSFISGTKVPGSVHLF*SLGHSL
Trigger: GAGTGAGTGCCCAAGTGAGCAGAACAAATGGACGGA...TCCTGGTACCTTTGTGCCAGAAATGAATGAAGATTTGGATTTTCCTAATGACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp TTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACATAGAGCTTGCTATGGACCTCATTTCCTaGAGGATTTGCAGCGTGTGG +
Preference number: 4 (lower is better)
Translates to: LQSLCKTDCTPLEYIELAMDLIS*RICSVW
Trigger: CCACACGCTGCAAATCCTGCAGGAAATGAGGTCCAT...AGCAAGCTCTATGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp AGTAACAAAAGTTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACAATGGTTTCCAAAGGCTaGACCTGCTTCACCGGCAGC +
Preference number: 4 (lower is better)
Translates to: SNKSYKVCAKQIVHHWSTMVSKG*TCFTGS
Trigger: GCTGCCGGTGAAGCAGGTGCAGCCTTTGGAAACCAT...TGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAACTTTTGTTACT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp AGTTTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTATGGTTTCCAAAGGCTaGACCTGCTTCACCGGCAGC +
Preference number: 4 (lower is better)
Translates to: SLKIIILLAHSSDLRSRAMVSKG*TCFTGS
Trigger: GCTGCCGGTGAAGCAGGTGCAGCCTTTGGAAACCAT...AGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAAACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp CCCAGTCTGCTTTTTCACCTGCCAAAGGCTATAAAACTCCCACACAGATTTACATTGATCCCGTCCAAATaGTCCATTCTCTTCATTCCT +
Preference number: 4 (lower is better)
Translates to: PSLLFHLPKAIKLPHRFTLIPSK*SILFIP
Trigger: AGGAATGAAGAGAATGGAGCATTTGGACGGGATCAA...TGTAAATCTGTGTGGGAGTTTTATAGCCTTTGGCAGGTGAAAAAGCAGACTGGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp TCTGTTTCTTCACTAACACTTTGGCCTTCAAAGCCCAGCCCTGCATTGGTAATCATCAAAGGATTTTGGTaGCCATGCAAAGAGGTGAAT +
Preference number: 4 (lower is better)
Translates to: SVSSLTLWPSKPSPALVIIKGFW*PCKEVN
Trigger: ATTCACCTCTTTGCATGGGCACCAAAATCCTTTGAT...GATTACCAATGCAGGGCTGGGCTTTGAAGGCCAAAGTGTTAGTGAAGAAACAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TCTGTTTCTTCACTAACACTTTGGCCTTCAAAGCCCAGCCCTGCATTGGTAATCGTCACAATGTTTTTGTaGAAAGAGTACTTCCTCAGC +
Preference number: 4 (lower is better)
Translates to: SVSSLTLWPSKPSPALVIVTMFL*KEYFLS
Trigger: GCTGAGGAAGTACTCTTTCCACAAAAACATTGTGAC...GATTACCAATGCAGGGCTGGGCTTTGAAGGCCAAAGTGTTAGTGAAGAAACAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp GGTCTTCAGTTGTGTATTTATTGTGAAAAAGAATTGGGTAGAATGTTCCCCTTGATGCAGGACTCTGAGTaGTCTGCATCTGCTGCTGGT +
Preference number: 4 (lower is better)
Translates to: GLQLCIYCEKELGRMFPLMQDSE*SASAAG
Trigger: ACCAGCAGCAGATGCAGACCACTCAGAGTCCTGCAT...CAAGGGGAACATTCTACCCAATTCTTTTTCACAATAAATACACAACTGAAGACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp GAGTCATTAGGAAAATCCAAATCTTCATTCATTTCTGGCACAAAGGTACCAGGAGGCGCCGTCTCCTGCTaGTTTCTACATCTGAGAATT +
Preference number: 4 (lower is better)
Translates to: ESLGKSKSSFISGTKVPGGAVSC*FLHLRI
Trigger: AATTCTCAGATGTAGAAACCAGCAGGAGACGGCGCC...TCCTGGTACCTTTGTGCCAGAAATGAATGAAGATTTGGATTTTCCTAATGACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TCTGTTTCTTCACTAACACTTTGGCCTTCAAAGCCCAGCCCTGCATTGGTAATCAATCCATCTGGAACGTaGATATCAATCAGTAGCTTC +
Preference number: 4 (lower is better)
Translates to: SVSSLTLWPSKPSPALVINPSGT*ISISSF
Trigger: GAAGCTACTGATTGATATCCACGTTCCAGATGGATT...GATTACCAATGCAGGGCTGGGCTTTGAAGGCCAAAGTGTTAGTGAAGAAACAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR CAA 72 bp AACATAGCAAGCTCCATTTCCTCAGCGATAAGGTACTaGCACAAAGTTCCTCATGGCCTTTTGGTGTACATT +
Preference number: 4 (lower is better)
Translates to: NIASSISSAIRY*HKVPHGLLVYI
Trigger: AATGTACACCAAAAGGCCATGAGGAACTTTGTGCAAGTACCTTATCGCTGAGGAAATGGAGCTTGCTATGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp AGTAACAAAAGTTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACAGCCTTCTGCAGTTGTTaGAGTTCTTGGTCCTGTGGG +
Preference number: 4 (lower is better)
Translates to: SNKSYKVCAKQIVHHWSTAFCSC*SSWSCG
Trigger: CCCACAGGACCAAGAACTTCAACAACTGCAGAAGGC...TGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAACTTTTGTTACT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp GAGTCATTAGGAAAATCCAAATCTTCATTCATTTCTGGCACAAAGGTACCAGGATTGCTCTTGGCCCATTaGAAGCAGCACCATGATTAC +
Preference number: 4 (lower is better)
Translates to: ESLGKSKSSFISGTKVPGLLLAH*KQHHDY
Trigger: GTAATCATGGTGCTGCTTTCAATGGGCCAAGAGCAA...TCCTGGTACCTTTGTGCCAGAAATGAATGAAGATTTGGATTTTCCTAATGACTC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp GGTCTTCAGTTGTGTATTTATTGTGAAAAAGAATTGGGTAGAATGTTCCCCTTGTGCCCAGCAACAAATTaGCTCCCCACAAAGAACCAC +
Preference number: 4 (lower is better)
Translates to: GLQLCIYCEKELGRMFPLCPATN*LPTKNH
Trigger: GTGGTTCTTTGTGGGGAGTCAATTTGTTGCTGGGCA...CAAGGGGAACATTCTACCCAATTCTTTTTCACAATAAATACACAACTGAAGACC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp TCTTCATTCATTTCTGGCACAAAGGTACCAGGAAATGATGTACTATCAGGAAATTCCATCAGATACAGATaGGATTGGGTGCCCAGCAAC +
Preference number: 4 (lower is better)
Translates to: SSFISGTKVPGNDVLSGNSIRYR*DWVPSN
Trigger: GTTGCTGGGCACCCAATCTCATCTGTATCTGATGGA...ATTTCCTGATAGTACATCATTTCCTGGTACCTTTGTGCCAGAAATGAATGAAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp TCCAAATCTTCATTCATTTCTGGCACAAAGGTACCAGGAAATGATGTACTATCACTCAGCCAAGACAGATaGTACACGCGAAGTCTGTTC +
Preference number: 4 (lower is better)
Translates to: SKSSFISGTKVPGNDVLSLSQDR*YTRSLF
Trigger: GAACAGACTTCGCGTGTATCATCTGTCTTGGCTGAG...TGATAGTACATCATTTCCTGGTACCTTTGTGCCAGAAATGAATGAAGATTTGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp GCTCCTAACCTGCCAAAATGTTCACACTTCCAACCAGGATTCTCATTAAAACTGTTTGGTCCCATCCAGTaGTTCTCTTTGTACACTCAA +
Preference number: 4 (lower is better)
Translates to: APNLPKCSHFQPGFSLKLFGPIQ*FSLYTQ
Trigger: TTGAGTGTACAAAGAGAATCACTGGATGGGACCAAA...CAGTTTTAATGAGAATCCTGGTTGGAAGTGTGAACATTTTGGCAGGTTAGGAGC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113052.8
CDS-3UTR GCA 90 bp CCCAGTCTGCTTTTTCACCTGCCAAAGGCTATAAAACTCCCACACAGATTTACATGGTTTTGTGACAAATaGATTTGGTGCTCGAAGCAA +
Preference number: 4 (lower is better)
Translates to: PSLLFHLPKAIKLPHRFTWFCDK*IWCSKQ
Trigger: TTGCTTCGAGCACCAAATGCATTTGTCACAAAACCA...TGTAAATCTGTGTGGGAGTTTTATAGCCTTTGGCAGGTGAAAAAGCAGACTGGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp AATCAAACCATTCTCTCTCCAGTACGGCTCCTAACCTGCCAAAATGTTCACACTGCTTTGGGAAAAGCTTaGATGTATTGTCCTGAGAAT +
Preference number: 4 (lower is better)
Translates to: NQTILSPVRLLTCQNVHTALGKA*MYCPEN
Trigger: ATTCTCAGGACAATACATCCAAGCTTTTCCCAAAGC...AGTGTGAACATTTTGGCAGGTTAGGAGCCGTACTGGAGAGAGAATGGTTTGATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACATAGAGCTTGCTAGTGACTTGAGCATCTaGGCTGCTTTGCTTACTTGG +
Preference number: 4 (lower is better)
Translates to: LQSLCKTDCTPLEYIELASDLSI*AALLTW
Trigger: CCAAGTAAGCAAAGCAGCCCAGATGCTCAAGTCACT...AGCAAGCTCTATGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp AAAACTAAACTGCCACAAAATCAAACCATTCTCTCTCCAGTACGGCTCCTAACCAATTCTTCTGGCACCTaGTCCAAATCTTTAGGCTGT +
Preference number: 4 (lower is better)
Translates to: KTKLPQNQTILSPVRLLTNSSGT*SKSLGC
Trigger: ACAGCCTAAAGATTTGGACCAGGTGCCAGAAGAATT...GGTTAGGAGCCGTACTGGAGAGAGAATGGTTTGATTTTGTGGCAGTTTAGTTTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACATAGAGCTTGCTGGGATAATTTGCTCTTaGCCCATTGAAAGCAGCACC +
Preference number: 4 (lower is better)
Translates to: LQSLCKTDCTPLEYIELAGIICS*PIESST
Trigger: GGTGCTGCTTTCAATGGGCCAAGAGCAAATTATCCC...AGCAAGCTCTATGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp AGATTCTCTTTGCTATTTCCTGTGCTTGCTGGAATAAATGCCACAGAGAACAATGGGATAATTTGCTCTTaGCCCATTGAAAGCAGCACC +
Preference number: 4 (lower is better)
Translates to: RFSLLFPVLAGINATENNGIICS*PIESST
Trigger: GGTGCTGCTTTCAATGGGCCAAGAGCAAATTATCCC...ATTGTTCTCTGTGGCATTTATTCCAGCAAGCACAGGAAATAGCAAAGAGAATCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TCTTCAGATTTGAGAAGCAGAGCTAGAGGACTTATTGAGGTATACTTTGTGGTATTCCATTGCCCCTATTaGCTCCATGGTTTCCAAAGG +
Preference number: 4 (lower is better)
Translates to: SSDLRSRARGLIEVYFVVFHCPY*LHGFQR
Trigger: CCTTTGGAAACCATGGAGCCAATAGGGGCAATGGAA...TACCACAAAGTATACCTCAATAAGTCCTCTAGCTCTGCTTCTCAAATCTGAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp AGATTCTCTTTGCTATTTCCTGTGCTTGCTGGAATAAATGCCACAGAGAACAATCAGGAGGATTCAGCTTaGAAAATGCTCCATAGAAGG +
Preference number: 4 (lower is better)
Translates to: RFSLLFPVLAGINATENNQEDSA*KMLHRR
Trigger: CCTTCTATGGAGCATTTTTCAAGCTGAATCCTCCTG...ATTGTTCTCTGTGGCATTTATTCCAGCAAGCACAGGAAATAGCAAAGAGAATCT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp AGTAACAAAAGTTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACATCCTCACTACATCAGTaGCTGAGCCTGCTGCACATA +
Preference number: 4 (lower is better)
Translates to: SNKSYKVCAKQIVHHWSTSSLHQ*LSLLHI
Trigger: TATGTGCAGCAGGCTCAGTCACTGATGTAGTGAGGA...TGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAACTTTTGTTACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp TCTTCAGATTTGAGAAGCAGAGCTAGAGGACTTATTGAGGTATACTTTGTGGTAGACCAAGTGGTTTTGTaGCAAATGCATTTGGTGCTC +
Preference number: 4 (lower is better)
Translates to: SSDLRSRARGLIEVYFVVDQVVL*QMHLVL
Trigger: GAGCACCAAATGCATTTGTCACAAAACCACTTGGTC...TACCACAAAGTATACCTCAATAAGTCCTCTAGCTCTGCTTCTCAAATCTGAAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp TCTTCAGATTTGAGAAGCAGAGCTAGAGGACTTATTGAGGTATACTTTGTGGTAATAATGCCTTTGCTCTaGACCTCTTGGGTCTTAGTC +
Preference number: 4 (lower is better)
Translates to: SSDLRSRARGLIEVYFVVIMPLL*TSWVLV
Trigger: GACTAAGACCCAAGAGGTTCAGAGCAAAGGCATTAT...TACCACAAAGTATACCTCAATAAGTCCTCTAGCTCTGCTTCTCAAATCTGAAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp TCCAAATCTTCATTCATTTCTGGCACAAAGGTACCAGGAAATGATGTACTATCATTGCTCTTGGCCCATTaGAAGCAGCACCATGATTAC +
Preference number: 4 (lower is better)
Translates to: SKSSFISGTKVPGNDVLSLLLAH*KQHHDY
Trigger: GTAATCATGGTGCTGCTTTCAATGGGCCAAGAGCAA...TGATAGTACATCATTTCCTGGTACCTTTGTGCCAGAAATGAATGAAGATTTGGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp GGTCTTCAGTTGTGTATTTATTGTGAAAAAGAATTGGGTAGAATGTTCCCCTTGGAAATCTCAGTTTCTTaGTTGAGCGGCGCTTCAGCT +
Preference number: 4 (lower is better)
Translates to: GLQLCIYCEKELGRMFPLEISVS*LSGASA
Trigger: AGCTGAAGCGCCGCTCAATCAAGAAACTGAGATTTC...CAAGGGGAACATTCTACCCAATTCTTTTTCACAATAAATACACAACTGAAGACC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
CDS-3UTR GCA 90 bp CGATCACTGGACCCCTTTAAACAGCATAGCTTCTATGGAGCTCTTCAAGTTTTCTTCATAAGCACCGTTTaGAACTTCTTCATCACCATT +
Preference number: 4 (lower is better)
Translates to: RSLDPFKQHSFYGALQVFFISTV*NFFITI
Trigger: AATGGTGATGAAGAAGTTGCAAACGGTGCTTATGAA...GAAAACTTGAAGAGCTCCATAGAAGCTATGCTGTTTAAAGGGGTCCAGTGATCG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp AATCAAACCATTCTCTCTCCAGTACGGCTCCTAACCTGCCAAAATGTTCACACTCATCCAACAGACTTTTaGTATTTATTCACTCTCACC +
Preference number: 4 (lower is better)
Translates to: NQTILSPVRLLTCQNVHTHPTDF*YLFTLT
Trigger: GGTGAGAGTGAATAAATACCAAAAGTCTGTTGGATG...AGTGTGAACATTTTGGCAGGTTAGGAGCCGTACTGGAGAGAGAATGGTTTGATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TCTTCAGATTTGAGAAGCAGAGCTAGAGGACTTATTGAGGTATACTTTGTGGTATTTGTTCTGCTCACTTaGGCACTCACTCCAAAATCC +
Preference number: 4 (lower is better)
Translates to: SSDLRSRARGLIEVYFVVFVLLT*ALTPKS
Trigger: GGATTTTGGAGTGAGTGCCCAAGTGAGCAGAACAAA...TACCACAAAGTATACCTCAATAAGTCCTCTAGCTCTGCTTCTCAAATCTGAAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp AAATGTTCACACTTCCAACCAGGATTCTCATTAAAACTGGCTTTCTGGACTGCCATCATAGGAACACCTTaGGTCCTCATCACAATGAAT +
Preference number: 4 (lower is better)
Translates to: KCSHFQPGFSLKLAFWTAIIGTP*VLITMN
Trigger: ATTCATTGTGATGAGGACCCAAGGTGTTCCTATGAT...GGCAGTCCAGAAAGCCAGTTTTAATGAGAATCCTGGTTGGAAGTGTGAACATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp CAACCGGAAAAGTACTTCAAAGATCCCATTGAGAGTGTGTGGCATTACTTACTCTTTTCCATGAAATTCTaGAACTTACGGGACCATCCA +
Preference number: 4 (lower is better)
Translates to: QPEKYFKDPIESVWHYLLFSMKF*NLRDHP
Trigger: TGGATGGTCCCGTAAGTTCCAGAATTTCATGGAAAA...GAGTAAGTAATGCCACACACTCTCAATGGGATCTTTGAAGTACTTTTCCGGTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113052.8
CDS-3UTR CCA 90 bp TCCAAATCTTCATTCATTTCTGGCACAAAGGTACCAGGAAATGATGTACTATCAAGTGACTTGAGCATCTaGGCTGCTTTGCTTACTTGG +
Preference number: 4 (lower is better)
Translates to: SKSSFISGTKVPGNDVLSSDLSI*AALLTW
Trigger: CCAAGTAAGCAAAGCAGCCCAGATGCTCAAGTCACT...TGATAGTACATCATTTCCTGGTACCTTTGTGCCAGAAATGAATGAAGATTTGGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TCTTCAGATTTGAGAAGCAGAGCTAGAGGACTTATTGAGGTATACTTTGTGGTATGTGACAAATGCATTTaGTGCTCGAAGCAAGTCCCT +
Preference number: 4 (lower is better)
Translates to: SSDLRSRARGLIEVYFVVCDKCI*CSKQVP
Trigger: AGGGACTTGCTTCGAGCACCAAATGCATTTGTCACA...TACCACAAAGTATACCTCAATAAGTCCTCTAGCTCTGCTTCTCAAATCTGAAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp GTAGCAGTTACCATAGGTGAGGAAATATCACCTATTTTTGGCGTCTATAAAATAGGCGCCGTCTCCTGCTaGTTTCTACATCTGAGAATT +
Preference number: 4 (lower is better)
Translates to: VAVTIGEEISPIFGVYKIGAVSC*FLHLRI
Trigger: AATTCTCAGATGTAGAAACCAGCAGGAGACGGCGCC...TATTTTATAGACGCCAAAAATAGGTGATATTTCCTCACCTATGGTAACTGCTAC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp GCTCCTAACCTGCCAAAATGTTCACACTTCCAACCAGGATTCTCATTAAAACTGTTCCTCACCAACACTTaGAGAAAATTTCACACGATG +
Preference number: 4 (lower is better)
Translates to: APNLPKCSHFQPGFSLKLFLTNT*RKFHTM
Trigger: CATCGTGTGAAATTTTCTCCAAGTGTTGGTGAGGAA...CAGTTTTAATGAGAATCCTGGTTGGAAGTGTGAACATTTTGGCAGGTTAGGAGC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp GAAATAGTTCTGAACCTCCAACATAGCAAGCTCCATTTCCTCAGCGATAAGGTAAATCCATCTGGAACGTaGATATCAATCAGTAGCTTC +
Preference number: 4 (lower is better)
Translates to: EIVLNLQHSKLHFLSDKVNPSGT*ISISSF
Trigger: GAAGCTACTGATTGATATCCACGTTCCAGATGGATT...TACCTTATCGCTGAGGAAATGGAGCTTGCTATGTTGGAGGTTCAGAACTATTTC
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp CTTCTATTACAAAGTATAATGAGGAGGAAAGGACATAGTCCCAGTCTGCTTTTTCTCCATGGAAAGCTCTaGCTGCATTGTCTCCAAAGA +
Preference number: 4 (lower is better)
Translates to: LLLQSIMRRKGHSPSLLFLHGKL*LHCLQR
Trigger: TCTTTGGAGACAATGCAGCCAGAGCTTTCCATGGAG...AAAAAGCAGACTGGGACTATGTCCTTTCCTCCTCATTATACTTTGTAATAGAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp AAGCAATCAGGTAAAATGACGACATTATTATTTGGCAAGGTCACCTCAGACATATTCCATTGCCCCTATTaGCTCCATGGTTTCCAAAGG +
Preference number: 4 (lower is better)
Translates to: KQSGKMTTLLFGKVTSDIFHCPY*LHGFQR
Trigger: CCTTTGGAAACCATGGAGCCAATAGGGGCAATGGAA...TATGTCTGAGGTGACCTTGCCAAATAATAATGTCGTCATTTTACCTGATTGCTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TCTTCAGATTTGAGAAGCAGAGCTAGAGGACTTATTGAGGTATACTTTGTGGTACTTCATTCCTTCCATTaGCCTCCCTGTTTCTGTTAC +
Preference number: 4 (lower is better)
Translates to: SSDLRSRARGLIEVYFVVLHSFH*PPCFCY
Trigger: GTAACAGAAACAGGGAGGCCAATGGAAGGAATGAAG...TACCACAAAGTATACCTCAATAAGTCCTCTAGCTCTGCTTCTCAAATCTGAAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp CAACCGGAAAAGTACTTCAAAGATCCCATTGAGAGTGTGTGGCATTACTTACTCCTCATGTTCAAACTCTaGAAATACATGTTGATCCCG +
Preference number: 4 (lower is better)
Translates to: QPEKYFKDPIESVWHYLLLMFKL*KYMLIP
Trigger: CGGGATCAACATGTATTTCCAGAGTTTGAACATGAG...GAGTAAGTAATGCCACACACTCTCAATGGGATCTTTGAAGTACTTTTCCGGTTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113052.8
CDS-3UTR CCA 90 bp TCTGATGTTAGGATTCAATGGCATGTGTGTGGTGGATGTAAAGGTTGTAGTCGAGACGACATTATTATTTaGCAAGGTCACCTCAGACAT +
Preference number: 4 (lower is better)
Translates to: SDVRIQWHVCGGCKGCSRDDIII*QGHLRH
Trigger: ATGTCTGAGGTGACCTTGCCAAATAATAATGTCGTC...TCGACTACAACCTTTACATCCACCACACACATGCCATTGAATCCTAACATCAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
CDS-3UTR TCA 90 bp GATAAAATTCTGATGTTAGGATTCAATGGCATGTGTGTGGTGGATGTAAAGGTTCAGGAGGATTCAGCTTaGAAAATGCTCCATAGAAGG +
Preference number: 4 (lower is better)
Translates to: DKILMLGFNGMCVVDVKVQEDSA*KMLHRR
Trigger: CCTTCTATGGAGCATTTTTCAAGCTGAATCCTCCTG...AACCTTTACATCCACCACACACATGCCATTGAATCCTAACATCAGAATTTTATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp TCTTCAGATTTGAGAAGCAGAGCTAGAGGACTTATTGAGGTATACTTTGTGGTATTGGATGTATTGTCCTaGGAATGTAGAGGCATGAAC +
Preference number: 4 (lower is better)
Translates to: SSDLRSRARGLIEVYFVVLDVLS*ECRGMN
Trigger: GTTCATGCCTCTACATTCTCAGGACAATACATCCAA...TACCACAAAGTATACCTCAATAAGTCCTCTAGCTCTGCTTCTCAAATCTGAAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp GGTCTTCAGTTGTGTATTTATTGTGAAAAAGAATTGGGTAGAATGTTCCCCTTGGACCAAGTGGTTTTGTaGCAAATGCATTTGGTGCTC +
Preference number: 4 (lower is better)
Translates to: GLQLCIYCEKELGRMFPLDQVVL*QMHLVL
Trigger: GAGCACCAAATGCATTTGTCACAAAACCACTTGGTC...CAAGGGGAACATTCTACCCAATTCTTTTTCACAATAAATACACAACTGAAGACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp GAAATAGTTCTGAACCTCCAACATAGCAAGCTCCATTTCCTCAGCGATAAGGTAGACTTCAGCCTGAATTaGATGAAACACTTCATCATT +
Preference number: 4 (lower is better)
Translates to: EIVLNLQHSKLHFLSDKVDFSLN*MKHFII
Trigger: AATGATGAAGTGTTTCATTCAATTCAGGCTGAAGTC...TACCTTATCGCTGAGGAAATGGAGCTTGCTATGTTGGAGGTTCAGAACTATTTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp AGTAACAAAAGTTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACACTTCAGTGTTTTCTCTaGACCAACAGCCAGGTCAAC +
Preference number: 4 (lower is better)
Translates to: SNKSYKVCAKQIVHHWSTLQCFL*TNSQVN
Trigger: GTTGACCTGGCTGTTGGTTCAGAGAAAACACTGAAG...TGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAACTTTTGTTACT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
CDS-3UTR TCA 90 bp GTAGCAGTTACCATAGGTGAGGAAATATCACCTATTTTTGGCGTCTATAAAATATCTCAGTTTCTTGATTaGGCGGCGCTTCAGCTCATT +
Preference number: 4 (lower is better)
Translates to: VAVTIGEEISPIFGVYKISQFLD*AALQLI
Trigger: AATGAGCTGAAGCGCCGCTCAATCAAGAAACTGAGA...TATTTTATAGACGCCAAAAATAGGTGATATTTCCTCACCTATGGTAACTGCTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
CDS-3UTR TCA 90 bp TTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTAGATCTCAGTTTCTTGATTaGGCGGCGCTTCAGCTCATT +
Preference number: 4 (lower is better)
Translates to: LKIIILLAHSSDLRSRARSQFLD*AALQLI
Trigger: AATGAGCTGAAGCGCCGCTCAATCAAGAAACTGAGA...TCTAGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
CDS-3UTR GCA 90 bp CAACCGGAAAAGTACTTCAAAGATCCCATTGAGAGTGTGTGGCATTACTTACTCTTCATAAGCACCGTTTaGAACTTCTTCATCACCATT +
Preference number: 4 (lower is better)
Translates to: QPEKYFKDPIESVWHYLLFISTV*NFFITI
Trigger: AATGGTGATGAAGAAGTTGCAAACGGTGCTTATGAA...GAGTAAGTAATGCCACACACTCTCAATGGGATCTTTGAAGTACTTTTCCGGTTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113052.8
CDS-3UTR GCA 90 bp AGTTTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTTGTTACCTCTTCCATTaGCCCTATTGGCTCCATGGT +
Preference number: 4 (lower is better)
Translates to: SLKIIILLAHSSDLRSRACYLFH*PYWLHG
Trigger: ACCATGGAGCCAATAGGGGCAATGGAAGAGGTAACA...AGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAAACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp TTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTAGATGTTACCTCTTCCATTaGCCCTATTGGCTCCATGGT +
Preference number: 4 (lower is better)
Translates to: LKIIILLAHSSDLRSRARCYLFH*PYWLHG
Trigger: ACCATGGAGCCAATAGGGGCAATGGAAGAGGTAACA...TCTAGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp GAGTCATTAGGAAAATCCAAATCTTCATTCATTTCTGGCACAAAGGTACCAGGATTGATCCCGTCCAAATaGTCCATTCTCTTCATTCCT +
Preference number: 4 (lower is better)
Translates to: ESLGKSKSSFISGTKVPGLIPSK*SILFIP
Trigger: AGGAATGAAGAGAATGGAGCATTTGGACGGGATCAA...TCCTGGTACCTTTGTGCCAGAAATGAATGAAGATTTGGATTTTCCTAATGACTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp AATGTTCCCCTTGATCTATGTAATTTTCTTTGCGCACACAGGTTGTTCAACCTTTTGATCCCGTCCAAATaGTCCATTCTCTTCATTCCT +
Preference number: 4 (lower is better)
Translates to: NVPLDLCNFLCAHRLFNLLIPSK*SILFIP
Trigger: AGGAATGAAGAGAATGGAGCATTTGGACGGGATCAA...AAGGTTGAACAACCTGTGTGCGCAAAGAAAATTACATAGATCAAGGGGAACATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp AATGTTCCCCTTGATCTATGTAATTTTCTTTGCGCACACAGGTTGTTCAACCTTTTCCTCATCGCCTTCTaGCTTTTCTTACTCTTTGGA +
Preference number: 4 (lower is better)
Translates to: NVPLDLCNFLCAHRLFNLFLIAF*LFLLFG
Trigger: TCCAAAGAGTAAGAAAAGGCAGAAGGCGATGAGGAA...AAGGTTGAACAACCTGTGTGCGCAAAGAAAATTACATAGATCAAGGGGAACATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp TCTTCAGATTTGAGAAGCAGAGCTAGAGGACTTATTGAGGTATACTTTGTGGTATTCCTCATCGCCTTCTaGCTTTTCTTACTCTTTGGA +
Preference number: 4 (lower is better)
Translates to: SSDLRSRARGLIEVYFVVFLIAF*LFLLFG
Trigger: TCCAAAGAGTAAGAAAAGGCAGAAGGCGATGAGGAA...TACCACAAAGTATACCTCAATAAGTCCTCTAGCTCTGCTTCTCAAATCTGAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp GGTCTTCAGTTGTGTATTTATTGTGAAAAAGAATTGGGTAGAATGTTCCCCTTGTTTGTTCTGCTCACTTaGGCACTCACTCCAAAATCC +
Preference number: 4 (lower is better)
Translates to: GLQLCIYCEKELGRMFPLFVLLT*ALTPKS
Trigger: GGATTTTGGAGTGAGTGCCCAAGTGAGCAGAACAAA...CAAGGGGAACATTCTACCCAATTCTTTTTCACAATAAATACACAACTGAAGACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp GGTCTTCAGTTGTGTATTTATTGTGAAAAAGAATTGGGTAGAATGTTCCCCTTGCCCCTGAAATTCTTCTaGCACCTGGTCCAAATCTTT +
Preference number: 4 (lower is better)
Translates to: GLQLCIYCEKELGRMFPLPLKFF*HLVQIF
Trigger: AAAGATTTGGACCAGGTGCCAGAAGAATTTCAGGGG...CAAGGGGAACATTCTACCCAATTCTTTTTCACAATAAATACACAACTGAAGACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTAGAGGGATAATTTGCTCTTaGCCCATTGAAAGCAGCACC +
Preference number: 4 (lower is better)
Translates to: LKIIILLAHSSDLRSRARGIICS*PIESST
Trigger: GGTGCTGCTTTCAATGGGCCAAGAGCAAATTATCCC...TCTAGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp GTAGCAGTTACCATAGGTGAGGAAATATCACCTATTTTTGGCGTCTATAAAATACTCCATGGAAAGCTCTaGCTGCATTGTCTCCAAAGA +
Preference number: 4 (lower is better)
Translates to: VAVTIGEEISPIFGVYKILHGKL*LHCLQR
Trigger: TCTTTGGAGACAATGCAGCCAGAGCTTTCCATGGAG...TATTTTATAGACGCCAAAAATAGGTGATATTTCCTCACCTATGGTAACTGCTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp GTAGCAGTTACCATAGGTGAGGAAATATCACCTATTTTTGGCGTCTATAAAATATTCCATTGCCCCTATTaGCTCCATGGTTTCCAAAGG +
Preference number: 4 (lower is better)
Translates to: VAVTIGEEISPIFGVYKIFHCPY*LHGFQR
Trigger: CCTTTGGAAACCATGGAGCCAATAGGGGCAATGGAA...TATTTTATAGACGCCAAAAATAGGTGATATTTCCTCACCTATGGTAACTGCTAC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TCTTCATTCATTTCTGGCACAAAGGTACCAGGAAATGATGTACTATCAGGAAATCTTCATTCCTTCCATTaGCCTCCCTGTTTCTGTTAC +
Preference number: 4 (lower is better)
Translates to: SSFISGTKVPGNDVLSGNLHSFH*PPCFCY
Trigger: GTAACAGAAACAGGGAGGCCAATGGAAGGAATGAAG...ATTTCCTGATAGTACATCATTTCCTGGTACCTTTGTGCCAGAAATGAATGAAGA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTAGACAGGTCAACTGTCAGTaGCTTAAGATCACGAGTTGG +
Preference number: 4 (lower is better)
Translates to: LKIIILLAHSSDLRSRARQVNCQ*LKITSW
Trigger: CCAACTCGTGATCTTAAGCCACTGACAGTTGACCTG...TCTAGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
CDS-3UTR CCA 90 bp AGTTTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTATGAAGGAGCTCATCTaGTCTCTTAAACCGGTTCGC +
Preference number: 4 (lower is better)
Translates to: SLKIIILLAHSSDLRSRAMKELI*SLKPVR
Trigger: GCGAACCGGTTTAAGAGACCAGATGAGCTCCTTCAT...AGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAAACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
3UTR CAA 72 bp CAGCCCTGCATTGGTAATCTTTCATGTGTAATTGCTTaGGGACAGCATTGTAGATTCTCTTTGCTATTTCCT +
Preference number: 4 (lower is better)
Translates to: QPCIGNLSCVIA*GQHCRFSLLFP
Trigger: AGGAAATAGCAAAGAGAATCTACAATGCTGTCCCAAAGCAATTACACATGAAAGATTACCAATGCAGGGCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp AGTAACAAAAGTTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACACAGGAGGATTCAGCTTaGAAAATGCTCCATAGAAGG +
Preference number: 4 (lower is better)
Translates to: SNKSYKVCAKQIVHHWSTQEDSA*KMLHRR
Trigger: CCTTCTATGGAGCATTTTTCAAGCTGAATCCTCCTG...TGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAACTTTTGTTACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp GATAAAATTCTGATGTTAGGATTCAATGGCATGTGTGTGGTGGATGTAAAGGTTGCACATTTTGTCCTTTaGTGTCCCGGTGAATTACTT +
Preference number: 4 (lower is better)
Translates to: DKILMLGFNGMCVVDVKVAHFVL*CPGELL
Trigger: AAGTAATTCACCGGGACATCAAAGGACAAAATGTGC...AACCTTTACATCCACCACACACATGCCATTGAATCCTAACATCAGAATTTTATC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp TCTTCATTCATTTCTGGCACAAAGGTACCAGGAAATGATGTACTATCAGGAAATGCACATTTTGTCCTTTaGTGTCCCGGTGAATTACTT +
Preference number: 4 (lower is better)
Translates to: SSFISGTKVPGNDVLSGNAHFVL*CPGELL
Trigger: AAGTAATTCACCGGGACATCAAAGGACAAAATGTGC...ATTTCCTGATAGTACATCATTTCCTGGTACCTTTGTGCCAGAAATGAATGAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp TCTTCATTCATTTCTGGCACAAAGGTACCAGGAAATGATGTACTATCAGGAAATTTGGATGTATTGTCCTaGGAATGTAGAGGCATGAAC +
Preference number: 4 (lower is better)
Translates to: SSFISGTKVPGNDVLSGNLDVLS*ECRGMN
Trigger: GTTCATGCCTCTACATTCTCAGGACAATACATCCAA...ATTTCCTGATAGTACATCATTTCCTGGTACCTTTGTGCCAGAAATGAATGAAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp AGTTTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTGACCAAGTGGTTTTGTaGCAAATGCATTTGGTGCTC +
Preference number: 4 (lower is better)
Translates to: SLKIIILLAHSSDLRSRADQVVL*QMHLVL
Trigger: GAGCACCAAATGCATTTGTCACAAAACCACTTGGTC...AGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAAACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp TTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTAGAATAATGCCTTTGCTCTaGACCTCTTGGGTCTTAGTC +
Preference number: 4 (lower is better)
Translates to: LKIIILLAHSSDLRSRARIMPLL*TSWVLV
Trigger: GACTAAGACCCAAGAGGTTCAGAGCAAAGGCATTAT...TCTAGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp TTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACATAGAGCTTGCTCAAGTACACAGGAGGTaGTATTTTCCCCACTTTAAA +
Preference number: 4 (lower is better)
Translates to: LQSLCKTDCTPLEYIELAQVHRR*YFPHFK
Trigger: TTTAAAGTGGGGAAAATATCACCTCCTGTGTACTTG...AGCAAGCTCTATGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp TCTTCAGATTTGAGAAGCAGAGCTAGAGGACTTATTGAGGTATACTTTGTGGTACAAGTACACAGGAGGTaGTATTTTCCCCACTTTAAA +
Preference number: 4 (lower is better)
Translates to: SSDLRSRARGLIEVYFVVQVHRR*YFPHFK
Trigger: TTTAAAGTGGGGAAAATATCACCTCCTGTGTACTTG...TACCACAAAGTATACCTCAATAAGTCCTCTAGCTCTGCTTCTCAAATCTGAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp AATGTTCCCCTTGATCTATGTAATTTTCTTTGCGCACACAGGTTGTTCAACCTTTATTGGGCTGTTATATaGGATGTCACTCCCAAAATC +
Preference number: 4 (lower is better)
Translates to: NVPLDLCNFLCAHRLFNLYWAVI*DVTPKI
Trigger: GATTTTGGGAGTGACATCTCATATAACAGCCCAATA...AAGGTTGAACAACCTGTGTGCGCAAAGAAAATTACATAGATCAAGGGGAACATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp GAGTCATTAGGAAAATCCAAATCTTCATTCATTTCTGGCACAAAGGTACCAGGAACAGTAGACCTCAGATaGGAAATCCTTTTCATACAC +
Preference number: 4 (lower is better)
Translates to: ESLGKSKSSFISGTKVPGTVDLR*EILFIH
Trigger: GTGTATGAAAAGGATTTCTCATCTGAGGTCTACTGT...TCCTGGTACCTTTGTGCCAGAAATGAATGAAGATTTGGATTTTCCTAATGACTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp AATGTTCCCCTTGATCTATGTAATTTTCTTTGCGCACACAGGTTGTTCAACCTTACAGTAGACCTCAGATaGGAAATCCTTTTCATACAC +
Preference number: 4 (lower is better)
Translates to: NVPLDLCNFLCAHRLFNLTVDLR*EILFIH
Trigger: GTGTATGAAAAGGATTTCTCATCTGAGGTCTACTGT...AAGGTTGAACAACCTGTGTGCGCAAAGAAAATTACATAGATCAAGGGGAACATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp AATGTTCCCCTTGATCTATGTAATTTTCTTTGCGCACACAGGTTGTTCAACCTTGTTGTTTCTTCATGTTaGAGGACACTGAAGTGTTCA +
Preference number: 4 (lower is better)
Translates to: NVPLDLCNFLCAHRLFNLVVSSC*RTLKCS
Trigger: TGAACACTTCAGTGTCCTTCAACATGAAGAAACAAC...AAGGTTGAACAACCTGTGTGCGCAAAGAAAATTACATAGATCAAGGGGAACATT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp TCCAAATCTTCATTCATTTCTGGCACAAAGGTACCAGGAAATGATGTACTATCATCTGCATCGATGATATaGTATCCATTAGCTGAGCTG +
Preference number: 4 (lower is better)
Translates to: SKSSFISGTKVPGNDVLSSASMI*YPLAEL
Trigger: CAGCTCAGCTAATGGATATCATATCATCGATGCAGA...TGATAGTACATCATTTCCTGGTACCTTTGTGCCAGAAATGAATGAAGATTTGGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
CDS-3UTR GCA 90 bp TCTTCAGATTTGAGAAGCAGAGCTAGAGGACTTATTGAGGTATACTTTGTGGTAATCAAAGGATTTTGGTaGCCATGCAAAGAGGTGAAT +
Preference number: 4 (lower is better)
Translates to: SSDLRSRARGLIEVYFVVIKGFW*PCKEVN
Trigger: ATTCACCTCTTTGCATGGGCACCAAAATCCTTTGAT...TACCACAAAGTATACCTCAATAAGTCCTCTAGCTCTGCTTCTCAAATCTGAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp TCTGATGTTAGGATTCAATGGCATGTGTGTGGTGGATGTAAAGGTTGTAGTCGACATAACTTCAGATTCTaGATCGATGATATGATATCC +
Preference number: 4 (lower is better)
Translates to: SDVRIQWHVCGGCKGCSRHNFRF*IDDMIS
Trigger: GGATATCATATCATCGATGCAGAATCTGAAGTTATG...TCGACTACAACCTTTACATCCACCACACACATGCCATTGAATCCTAACATCAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
CDS-3UTR GCA 90 bp GCTCCTAACCTGCCAAAATGTTCACACTTCCAACCAGGATTCTCATTAAAACTGCATAACTTCAGATTCTaGATCGATGATATGATATCC +
Preference number: 4 (lower is better)
Translates to: APNLPKCSHFQPGFSLKLHNFRF*IDDMIS
Trigger: GGATATCATATCATCGATGCAGAATCTGAAGTTATG...CAGTTTTAATGAGAATCCTGGTTGGAAGTGTGAACATTTTGGCAGGTTAGGAGC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113052.8
CDS-3UTR CCA 90 bp GAGTCATTAGGAAAATCCAAATCTTCATTCATTTCTGGCACAAAGGTACCAGGAGTCACAATGTTTTTGTaGAAAGAGTACTTCCTCAGC +
Preference number: 4 (lower is better)
Translates to: ESLGKSKSSFISGTKVPGVTMFL*KEYFLS
Trigger: GCTGAGGAAGTACTCTTTCCACAAAAACATTGTGAC...TCCTGGTACCTTTGTGCCAGAAATGAATGAAGATTTGGATTTTCCTAATGACTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp GAGTCATTAGGAAAATCCAAATCTTCATTCATTTCTGGCACAAAGGTACCAGGAATCATAGGAACACCTTaGGTCCTCATCACAATGAAT +
Preference number: 4 (lower is better)
Translates to: ESLGKSKSSFISGTKVPGIIGTP*VLITMN
Trigger: ATTCATTGTGATGAGGACCCAAGGTGTTCCTATGAT...TCCTGGTACCTTTGTGCCAGAAATGAATGAAGATTTGGATTTTCCTAATGACTC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TCTTCAGATTTGAGAAGCAGAGCTAGAGGACTTATTGAGGTATACTTTGTGGTAGCTTTGGGAAAAGCTTaGATGTATTGTCCTGAGAAT +
Preference number: 4 (lower is better)
Translates to: SSDLRSRARGLIEVYFVVALGKA*MYCPEN
Trigger: ATTCTCAGGACAATACATCCAAGCTTTTCCCAAAGC...TACCACAAAGTATACCTCAATAAGTCCTCTAGCTCTGCTTCTCAAATCTGAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp GGTCTTCAGTTGTGTATTTATTGTGAAAAAGAATTGGGTAGAATGTTCCCCTTGAATTCTTCTGGCACCTaGTCCAAATCTTTAGGCTGT +
Preference number: 4 (lower is better)
Translates to: GLQLCIYCEKELGRMFPLNSSGT*SKSLGC
Trigger: ACAGCCTAAAGATTTGGACCAGGTGCCAGAAGAATT...CAAGGGGAACATTCTACCCAATTCTTTTTCACAATAAATACACAACTGAAGACC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp AGTTTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTTGTGACAAATGCATTTaGTGCTCGAAGCAAGTCCCT +
Preference number: 4 (lower is better)
Translates to: SLKIIILLAHSSDLRSRACDKCI*CSKQVP
Trigger: AGGGACTTGCTTCGAGCACCAAATGCATTTGTCACA...AGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAAACT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TCTTCAGATTTGAGAAGCAGAGCTAGAGGACTTATTGAGGTATACTTTGTGGTACTCATGTTCAAACTCTaGAAATACATGTTGATCCCG +
Preference number: 4 (lower is better)
Translates to: SSDLRSRARGLIEVYFVVLMFKL*KYMLIP
Trigger: CGGGATCAACATGTATTTCCAGAGTTTGAACATGAG...TACCACAAAGTATACCTCAATAAGTCCTCTAGCTCTGCTTCTCAAATCTGAAGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp AGTAACAAAAGTTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACACTTAAACCGGTTCGCTaGATCAGCTGCCTGTATTTT +
Preference number: 4 (lower is better)
Translates to: SNKSYKVCAKQIVHHWSTLKPVR*ISCLYF
Trigger: AAAATACAGGCAGCTGATCCAGCGAACCGGTTTAAG...TGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAACTTTTGTTACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp TTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTAGAGCACATTTTGTCCTTTaGTGTCCCGGTGAATTACTT +
Preference number: 4 (lower is better)
Translates to: LKIIILLAHSSDLRSRARAHFVL*CPGELL
Trigger: AAGTAATTCACCGGGACATCAAAGGACAAAATGTGC...TCTAGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp AGTAACAAAAGTTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACATTGGATGTATTGTCCTaGGAATGTAGAGGCATGAAC +
Preference number: 4 (lower is better)
Translates to: SNKSYKVCAKQIVHHWSTLDVLS*ECRGMN
Trigger: GTTCATGCCTCTACATTCTCAGGACAATACATCCAA...TGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAACTTTTGTTACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp AATGTTCCCCTTGATCTATGTAATTTTCTTTGCGCACACAGGTTGTTCAACCTTGACTTCAGCCTGAATTaGATGAAACACTTCATCATT +
Preference number: 4 (lower is better)
Translates to: NVPLDLCNFLCAHRLFNLDFSLN*MKHFII
Trigger: AATGATGAAGTGTTTCATTCAATTCAGGCTGAAGTC...AAGGTTGAACAACCTGTGTGCGCAAAGAAAATTACATAGATCAAGGGGAACATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp GGTCTTCAGTTGTGTATTTATTGTGAAAAAGAATTGGGTAGAATGTTCCCCTTGCAAGTACACAGGAGGTaGTATTTTCCCCACTTTAAA +
Preference number: 4 (lower is better)
Translates to: GLQLCIYCEKELGRMFPLQVHRR*YFPHFK
Trigger: TTTAAAGTGGGGAAAATATCACCTCCTGTGTACTTG...CAAGGGGAACATTCTACCCAATTCTTTTTCACAATAAATACACAACTGAAGACC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp AAGCAATCAGGTAAAATGACGACATTATTATTTGGCAAGGTCACCTCAGACATAACAGTAGACCTCAGATaGGAAATCCTTTTCATACAC +
Preference number: 4 (lower is better)
Translates to: KQSGKMTTLLFGKVTSDITVDLR*EILFIH
Trigger: GTGTATGAAAAGGATTTCTCATCTGAGGTCTACTGT...TATGTCTGAGGTGACCTTGCCAAATAATAATGTCGTCATTTTACCTGATTGCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp TCCAAATCTTCATTCATTTCTGGCACAAAGGTACCAGGAAATGATGTACTATCAGTTGTTTCTTCATGTTaGAGGACACTGAAGTGTTCA +
Preference number: 4 (lower is better)
Translates to: SKSSFISGTKVPGNDVLSVVSSC*RTLKCS
Trigger: TGAACACTTCAGTGTCCTTCAACATGAAGAAACAAC...TGATAGTACATCATTTCCTGGTACCTTTGTGCCAGAAATGAATGAAGATTTGGA
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp GTAGCAGTTACCATAGGTGAGGAAATATCACCTATTTTTGGCGTCTATAAAATATTTGGTCCCATCCAGTaGTTCTCTTTGTACACTCAA +
Preference number: 4 (lower is better)
Translates to: VAVTIGEEISPIFGVYKIFGPIQ*FSLYTQ
Trigger: TTGAGTGTACAAAGAGAATCACTGGATGGGACCAAA...TATTTTATAGACGCCAAAAATAGGTGATATTTCCTCACCTATGGTAACTGCTAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
CDS-3UTR GCA 90 bp AATGTTCCCCTTGATCTATGTAATTTTCTTTGCGCACACAGGTTGTTCAACCTTTTCATAAGCACCGTTTaGAACTTCTTCATCACCATT +
Preference number: 4 (lower is better)
Translates to: NVPLDLCNFLCAHRLFNLFISTV*NFFITI
Trigger: AATGGTGATGAAGAAGTTGCAAACGGTGCTTATGAA...AAGGTTGAACAACCTGTGTGCGCAAAGAAAATTACATAGATCAAGGGGAACATT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp GAGTCATTAGGAAAATCCAAATCTTCATTCATTTCTGGCACAAAGGTACCAGGAAAGTTTAACAATTTCTaGCTTTCCACTTCGGTCCAT +
Preference number: 4 (lower is better)
Translates to: ESLGKSKSSFISGTKVPGKFNNF*LSTSVH
Trigger: ATGGACCGAAGTGGAAAGGCAGAAATTGTTAAACTT...TCCTGGTACCTTTGTGCCAGAAATGAATGAAGATTTGGATTTTCCTAATGACTC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp GGTCTTCAGTTGTGTATTTATTGTGAAAAAGAATTGGGTAGAATGTTCCCCTTGATCAAAGGATTTTGGTaGCCATGCAAAGAGGTGAAT +
Preference number: 4 (lower is better)
Translates to: GLQLCIYCEKELGRMFPLIKGFW*PCKEVN
Trigger: ATTCACCTCTTTGCATGGGCACCAAAATCCTTTGAT...CAAGGGGAACATTCTACCCAATTCTTTTTCACAATAAATACACAACTGAAGACC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp TCTTCAGATTTGAGAAGCAGAGCTAGAGGACTTATTGAGGTATACTTTGTGGTAAGCTGCCTGTATTTTTaGCAATATTCGTATATAGGC +
Preference number: 4 (lower is better)
Translates to: SSDLRSRARGLIEVYFVVSCLYF*QYSYIG
Trigger: GCCTATATACGAATATTGGCAAAAATACAGGCAGCT...TACCACAAAGTATACCTCAATAAGTCCTCTAGCTCTGCTTCTCAAATCTGAAGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp AGTAACAAAAGTTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACAGTTCGCTGGATCAGCTaGCTGTATTTTTGCCAATAT +
Preference number: 4 (lower is better)
Translates to: SNKSYKVCAKQIVHHWSTVRWIS*LYFCQY
Trigger: ATATTGGCAAAAATACAGGCAGCTGATCCAGCGAAC...TGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAACTTTTGTTACT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp GAACAACCGGAAAAGTACTTCAAAGATCCCATTGAGAGTGTGTGGCATTACTTAGAACCAGTCTTTTCATaGATTCCCAAAAAGATTCTT +
Preference number: 4 (lower is better)
Translates to: EQPEKYFKDPIESVWHYLEPVFS*IPKKIL
Trigger: AAGAATCTTTTTGGGAATCCATGAAAAGACTGGTTC...TAAGTAATGCCACACACTCTCAATGGGATCTTTGAAGTACTTTTCCGGTTGTTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000113052.8
CDS-3UTR CCA 90 bp GGTCTTCAGTTGTGTATTTATTGTGAAAAAGAATTGGGTAGAATGTTCCCCTTGGTCACAATGTTTTTGTaGAAAGAGTACTTCCTCAGC +
Preference number: 4 (lower is better)
Translates to: GLQLCIYCEKELGRMFPLVTMFL*KEYFLS
Trigger: GCTGAGGAAGTACTCTTTCCACAAAAACATTGTGAC...CAAGGGGAACATTCTACCCAATTCTTTTTCACAATAAATACACAACTGAAGACC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TCCAAATCTTCATTCATTTCTGGCACAAAGGTACCAGGAAATGATGTACTATCATTCCTCACCAACACTTaGAGAAAATTTCACACGATG +
Preference number: 4 (lower is better)
Translates to: SKSSFISGTKVPGNDVLSFLTNT*RKFHTM
Trigger: CATCGTGTGAAATTTTCTCCAAGTGTTGGTGAGGAA...TGATAGTACATCATTTCCTGGTACCTTTGTGCCAGAAATGAATGAAGATTTGGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp GATAAAATTCTGATGTTAGGATTCAATGGCATGTGTGTGGTGGATGTAAAGGTTAATCCATCTGGAACGTaGATATCAATCAGTAGCTTC +
Preference number: 4 (lower is better)
Translates to: DKILMLGFNGMCVVDVKVNPSGT*ISISSF
Trigger: GAAGCTACTGATTGATATCCACGTTCCAGATGGATT...AACCTTTACATCCACCACACACATGCCATTGAATCCTAACATCAGAATTTTATC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR CAA 72 bp CTAGAGATCTACTTGTCTATCCTCTTAGCACAGGAATaGAAAGTATTCATCACTGACTGGAATTTGTATGTG +
Preference number: 4 (lower is better)
Translates to: LEIYLSILLAQE*KVFITDWNLYV
Trigger: CACATACAAATTCCAGTCAGTGATGAATACTTTCAATTCCTGTGCTAAGAGGATAGACAAGTAGATCTCTAG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113052.8
CDS-3UTR TCA 90 bp TCTTCATTCATTTCTGGCACAAAGGTACCAGGAAATGATGTACTATCAGGAAATCAAAATCCACTATTTTaGCTTCAGCATCATGAGTCA +
Preference number: 4 (lower is better)
Translates to: SSFISGTKVPGNDVLSGNQNPLF*LQHHES
Trigger: TGACTCATGATGCTGAAGTCAAAATAGTGGATTTTG...ATTTCCTGATAGTACATCATTTCCTGGTACCTTTGTGCCAGAAATGAATGAAGA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp GATAAAATTCTGATGTTAGGATTCAATGGCATGTGTGTGGTGGATGTAAAGGTTCAAAATCCACTATTTTaGCTTCAGCATCATGAGTCA +
Preference number: 4 (lower is better)
Translates to: DKILMLGFNGMCVVDVKVQNPLF*LQHHES
Trigger: TGACTCATGATGCTGAAGTCAAAATAGTGGATTTTG...AACCTTTACATCCACCACACACATGCCATTGAATCCTAACATCAGAATTTTATC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp GGTCTTCAGTTGTGTATTTATTGTGAAAAAGAATTGGGTAGAATGTTCCCCTTGGACTTCAGCCTGAATTaGATGAAACACTTCATCATT +
Preference number: 4 (lower is better)
Translates to: GLQLCIYCEKELGRMFPLDFSLN*MKHFII
Trigger: AATGATGAAGTGTTTCATTCAATTCAGGCTGAAGTC...CAAGGGGAACATTCTACCCAATTCTTTTTCACAATAAATACACAACTGAAGACC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp AGTAACAAAAGTTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACATATTGGGCTGTTATATaGGATGTCACTCCCAAAATC +
Preference number: 4 (lower is better)
Translates to: SNKSYKVCAKQIVHHWSTYWAVI*DVTPKI
Trigger: GATTTTGGGAGTGACATCTCATATAACAGCCCAATA...TGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAACTTTTGTTACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR TCA 90 bp GTAGCAGTTACCATAGGTGAGGAAATATCACCTATTTTTGGCGTCTATAAAATATATTGGGCTGTTATATaGGATGTCACTCCCAAAATC +
Preference number: 4 (lower is better)
Translates to: VAVTIGEEISPIFGVYKIYWAVI*DVTPKI
Trigger: GATTTTGGGAGTGACATCTCATATAACAGCCCAATA...TATTTTATAGACGCCAAAAATAGGTGATATTTCCTCACCTATGGTAACTGCTAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp GTAGCAGTTACCATAGGTGAGGAAATATCACCTATTTTTGGCGTCTATAAAATATGGTTTTGTGACAAATaGATTTGGTGCTCGAAGCAA +
Preference number: 4 (lower is better)
Translates to: VAVTIGEEISPIFGVYKIWFCDK*IWCSKQ
Trigger: TTGCTTCGAGCACCAAATGCATTTGTCACAAAACCA...TATTTTATAGACGCCAAAAATAGGTGATATTTCCTCACCTATGGTAACTGCTAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp AAGCAATCAGGTAAAATGACGACATTATTATTTGGCAAGGTCACCTCAGACATACTGCTGATTGGTCAATaGATATTTAATGGCAGTGTT +
Preference number: 4 (lower is better)
Translates to: KQSGKMTTLLFGKVTSDILLIGQ*IFNGSV
Trigger: AACACTGCCATTAAATATGCATTGACCAATCAGCAG...TATGTCTGAGGTGACCTTGCCAAATAATAATGTCGTCATTTTACCTGATTGCTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTAGAATCATAGGAACACCTTaGGTCCTCATCACAATGAAT +
Preference number: 4 (lower is better)
Translates to: LKIIILLAHSSDLRSRARIIGTP*VLITMN
Trigger: ATTCATTGTGATGAGGACCCAAGGTGTTCCTATGAT...TCTAGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTAGATTTTCCATGAAATTCTaGAACTTACGGGACCATCCA +
Preference number: 4 (lower is better)
Translates to: LKIIILLAHSSDLRSRARFSMKF*NLRDHP
Trigger: TGGATGGTCCCGTAAGTTCCAGAATTTCATGGAAAA...TCTAGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp AGTTTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTTTTTCCATGAAATTCTaGAACTTACGGGACCATCCA +
Preference number: 4 (lower is better)
Translates to: SLKIIILLAHSSDLRSRAFSMKF*NLRDHP
Trigger: TGGATGGTCCCGTAAGTTCCAGAATTTCATGGAAAA...AGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAAACT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp GTAGCAGTTACCATAGGTGAGGAAATATCACCTATTTTTGGCGTCTATAAAATATTCCTCACCAACACTTaGAGAAAATTTCACACGATG +
Preference number: 4 (lower is better)
Translates to: VAVTIGEEISPIFGVYKIFLTNT*RKFHTM
Trigger: CATCGTGTGAAATTTTCTCCAAGTGTTGGTGAGGAA...TATTTTATAGACGCCAAAAATAGGTGATATTTCCTCACCTATGGTAACTGCTAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp AGTAACAAAAGTTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACAGACGACATTATTATTTaGCAAGGTCACCTCAGACAT +
Preference number: 4 (lower is better)
Translates to: SNKSYKVCAKQIVHHWSTDDIII*QGHLRH
Trigger: ATGTCTGAGGTGACCTTGCCAAATAATAATGTCGTC...TGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAACTTTTGTTACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
CDS-3UTR TCA 90 bp AGTTTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTCAAAATCCACTATTTTaGCTTCAGCATCATGAGTCA +
Preference number: 4 (lower is better)
Translates to: SLKIIILLAHSSDLRSRAQNPLF*LQHHES
Trigger: TGACTCATGATGCTGAAGTCAAAATAGTGGATTTTG...AGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAAACT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR GCA 90 bp TTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTAGAAAGTTTAACAATTTCTaGCTTTCCACTTCGGTCCAT +
Preference number: 4 (lower is better)
Translates to: LKIIILLAHSSDLRSRARKFNNF*LSTSVH
Trigger: ATGGACCGAAGTGGAAAGGCAGAAATTGTTAAACTT...TCTAGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp CTTCTATTACAAAGTATAATGAGGAGGAAAGGACATAGTCCCAGTCTGCTTTTTGAACCAGTCTTTTCATaGATTCCCAAAAAGATTCTT +
Preference number: 4 (lower is better)
Translates to: LLLQSIMRRKGHSPSLLFEPVFS*IPKKIL
Trigger: AAGAATCTTTTTGGGAATCCATGAAAAGACTGGTTC...AAAAAGCAGACTGGGACTATGTCCTTTCCTCCTCATTATACTTTGTAATAGAAG
36% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp AGTTTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTCATCCAACAGACTTTTaGTATTTATTCACTCTCACC +
Preference number: 4 (lower is better)
Translates to: SLKIIILLAHSSDLRSRAHPTDF*YLFTLT
Trigger: GGTGAGAGTGAATAAATACCAAAAGTCTGTTGGATG...AGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAAACT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR CAA 72 bp ACAGTAACAAAAGTTACAAAGTTTGTGCAAAACAGATaGTACACCACTGGAGTACATAGAGCTTGCTATAGT +
Preference number: 4 (lower is better)
Translates to: TVTKVTKFVQNR*YTTGVHRACYS
Trigger: ACTATAGCAAGCTCTATGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAACTTTTGTTACTGT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
3UTR CAA 72 bp TTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTaGAGAAGCAGAGCTAGAGGACTTATTGAGGTATAC +
Preference number: 4 (lower is better)
Translates to: LKIIILLAHSSD*RSRARGLIEVY
Trigger: GTATACCTCAATAAGTCCTCTAGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAA
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CCA 90 bp TTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTAGAGAACCAGTCTTTTCATaGATTCCCAAAAAGATTCTT +
Preference number: 4 (lower is better)
Translates to: LKIIILLAHSSDLRSRAREPVFS*IPKKIL
Trigger: AAGAATCTTTTTGGGAATCCATGAAAAGACTGGTTC...TCTAGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAA
34% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS GCA 90 bp ATCTCAGCTTGGGGAGGCTCCACAGCCTCTTCCTGCACCTCAGCTTaGTCAGGCTCCCTATCCTCCTCCGGCGGCTGCTCAGGAACCGGA +
Preference number: 5 (lower is better)
Translates to: ISAWGGSTASSCTSA*SGSLSSSGGCSGTG
Trigger: TCCGGTTCCTGAGCAGCCGCCGGAGGAGGATAGGGAGCCTGAGCAAGCTGAGGTGCAGGAAGAGGCTGTGGAGCCTCCCCAAGCTGAGAT
63% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS GCA 90 bp TCCTCCTCCGGCGGCTGCTCAGGAACCGGATTATGTATCTGCTGCTaGTCAGCAGCCTGGCCCTGCCTTGGCTGTTCAGGTGCCCTGTCT +
Preference number: 5 (lower is better)
Translates to: SSSGGCSGTGLCICC*SAAWPCLGCSGALS
Trigger: AGACAGGGCACCTGAACAGCCAAGGCAGGGCCAGGCTGCTGAGCAGCAGCAGATACATAATCCGGTTCCTGAGCAGCCGCCGGAGGAGGA
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS GCA 90 bp TTTGGTGCTCGAAGCAAGTCCCTGGATAGTCCCTCGATCAGCGCTTaGACTGCACCAACTGCCCTTGAGGCCTCTAGATCCCAGGCCTGG +
Preference number: 5 (lower is better)
Translates to: FGARSKSLDSPSISA*TAPTALEASRSQAW
Trigger: CCAGGCCTGGGATCTAGAGGCCTCAAGGGCAGTTGGTGCAGTGCAAGCGCTGATCGAGGGACTATCCAGGGACTTGCTTCGAGCACCAAA
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CCA 90 bp ACCTGGTCCAAATCTTTAGGCTGTTCTGTCTCTAAGGCCTCATGCTaGGCCTGCTGTCCTTCGGCTACGGGGGCCTGGACCTCTGGAGAA +
Preference number: 5 (lower is better)
Translates to: TWSKSLGCSVSKASC*ACCPSATGAWTSGE
Trigger: TTCTCCAGAGGTCCAGGCCCCCGTAGCCGAAGGACAGCAGGCCCAGCATGAGGCCTTAGAGACAGAACAGCCTAAAGATTTGGACCAGGT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CCA 90 bp GCTTGCACTGCACCAACTGCCCTTGAGGCCTCTAGATCCCAGGCCTaGGCTCGTGGTACCTCTTCATTTTGTTCCCCTACCGGAATGAGC +
Preference number: 5 (lower is better)
Translates to: ACTAPTALEASRSQA*ARGTSSFCSPTGMS
Trigger: GCTCATTCCGGTAGGGGAACAAAATGAAGAGGTACCACGAGCCCAGGCCTGGGATCTAGAGGCCTCAAGGGCAGTTGGTGCAGTGCAAGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS TCA 90 bp GCAGCCTGGCCCTGCCTTGGCTGTTCAGGTGCCCTGTCTTGCCCCTaGAATTCTTCTGGCACCTGGTCCAAATCTTTAGGCTGTTCTGTC +
Preference number: 5 (lower is better)
Translates to: AAWPCLGCSGALSCP*NSSGTWSKSLGCSV
Trigger: GACAGAACAGCCTAAAGATTTGGACCAGGTGCCAGAAGAATTTCAGGGGCAAGACAGGGCACCTGAACAGCCAAGGCAGGGCCAGGCTGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS GCA 90 bp AGGCAATTCCTCGGTCGGATGTTCATGGGCTGCTGCTGCTGCTGCTaGGGCTGGGCTTCTTCCAAAGAAGGCTCTTCCTCACCAACACTT +
Preference number: 5 (lower is better)
Translates to: RQFLGRMFMGCCCCC*GWASSKEGSSSPTL
Trigger: AAGTGTTGGTGAGGAAGAGCCTTCTTTGGAAGAAGCCCAGCCGCAGCAGCAGCAGCAGCAGCCCATGAACATCCGACCGAGGAATTGCCT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS GCA 90 bp GGATTTAGGCAATTCCTCGGTCGGATGTTCATGGGCTGCTGCTGCTaGTGCTGCGGCTGGGCTTCTTCCAAAGAAGGCTCTTCCTCACCA +
Preference number: 5 (lower is better)
Translates to: GFRQFLGRMFMGCCC*CCGWASSKEGSSSP
Trigger: TGGTGAGGAAGAGCCTTCTTTGGAAGAAGCCCAGCCGCAGCAGCAGCAGCAGCAGCCCATGAACATCCGACCGAGGAATTGCCTAAATCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CCA 90 bp AACCGGATTATGTATCTGCTGCTGCTCAGCAGCCTGGCCCTGCCTTaGCTGTTCAGGTGCCCTGTCTTGCCCCTGAAATTCTTCTGGCAC +
Preference number: 5 (lower is better)
Translates to: NRIMYLLLLSSLALP*LFRCPVLPLKFFWH
Trigger: GTGCCAGAAGAATTTCAGGGGCAAGACAGGGCACCTGAACAGCCAAGGCAGGGCCAGGCTGCTGAGCAGCAGCAGATACATAATCCGGTT
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CCA 90 bp GCTCCATGGTTTCCAAAGGCTGCACCTGCTTCACCGGCAGCTCCATaGAAAGCTCTGGCTGCATTGTCTCCAAAGACTCCAAAAGCTCCC +
Preference number: 5 (lower is better)
Translates to: APWFPKAAPASPAAP*KALAALSPKTPKAP
Trigger: GGGAGCTTTTGGAGTCTTTGGAGACAATGCAGCCAGAGCTTTCCATGGAGCTGCCGGTGAAGCAGGTGCAGCCTTTGGAAACCATGGAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp GAGCTCTTCAAGTTTTCCAAGGCTCATAAGGTAAACCCGGCTGTGGTCATTGCTCAGCCTGGCCCTGCCTaGGCTGTTCAGGTGCCCTGT +
Preference number: 5 (lower is better)
Translates to: ELFKFSKAHKVNPAVVIAQPGPA*AVQVPC
Trigger: ACAGGGCACCTGAACAGCCAAGGCAGGGCCAGGCTG...AGCAATGACCACAGCCGGGTTTACCTTATGAGCCTTGGAAAACTTGAAGAGCTC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS GCA 90 bp GTTACCTCTTCCATTGCCCCTATTGGCTCCATGGTTTCCAAAGGCTaGACCTGCTTCACCGGCAGCTCCATGGAAAGCTCTGGCTGCATT +
Preference number: 5 (lower is better)
Translates to: VTSSIAPIGSMVSKG*TCFTGSSMESSGCI
Trigger: AATGCAGCCAGAGCTTTCCATGGAGCTGCCGGTGAAGCAGGTGCAGCCTTTGGAAACCATGGAGCCAATAGGGGCAATGGAAGAGGTAAC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CCA 90 bp GCCTCCCTGTTTCTGTTACCTCTTCCATTGCCCCTATTGGCTCCATaGTTTCCAAAGGCTGCACCTGCTTCACCGGCAGCTCCATGGAAA +
Preference number: 5 (lower is better)
Translates to: ASLFLLPLPLPLLAP*FPKAAPASPAAPWK
Trigger: TTTCCATGGAGCTGCCGGTGAAGCAGGTGCAGCCTTTGGAAACCATGGAGCCAATAGGGGCAATGGAAGAGGTAACAGAAACAGGGAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CCA 90 bp TTCCATTGGCCTCCCTGTTTCTGTTACCTCTTCCATTGCCCCTATTaGCTCCATGGTTTCCAAAGGCTGCACCTGCTTCACCGGCAGCTC +
Preference number: 5 (lower is better)
Translates to: FHWPPCFCYLFHCPY*LHGFQRLHLLHRQL
Trigger: GAGCTGCCGGTGAAGCAGGTGCAGCCTTTGGAAACCATGGAGCCAATAGGGGCAATGGAAGAGGTAACAGAAACAGGGAGGCCAATGGAA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS TCA 90 bp AGGCCTGGGCTCGTGGTACCTCTTCATTTTGTTCCCCTACCGGAATaGGCAGCTGTCTATCCAAATGAAGAGGCAAGAGCACGTGACGGT +
Preference number: 5 (lower is better)
Translates to: RPGLVVPLHFVPLPE*AAVYPNEEARARDG
Trigger: ACCGTCACGTGCTCTTGCCTCTTCATTTGGATAGACAGCTGCTCATTCCGGTAGGGGAACAAAATGAAGAGGTACCACGAGCCCAGGCCT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CCA 90 bp TTCCAAAGGCTGCACCTGCTTCACCGGCAGCTCCATGGAAAGCTCTaGCTGCATTGTCTCCAAAGACTCCAAAAGCTCCCCTGTTTAGAG +
Preference number: 5 (lower is better)
Translates to: FQRLHLLHRQLHGKL*LHCLQRLQKLPCLE
Trigger: CTCTAAACAGGGGAGCTTTTGGAGTCTTTGGAGACAATGCAGCCAGAGCTTTCCATGGAGCTGCCGGTGAAGCAGGTGCAGCCTTTGGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS TCA 90 bp TTGGGAGCGGCTTCCCGTAGAATAACACAAAGGGCTTCCAGAGGCTaGAGCTTACACAGAGGAGGAGCCCCTTCAGCCATTTCAATAGCA +
Preference number: 5 (lower is better)
Translates to: LGAASRRITQRASRG*SLHRGGAPSAISIA
Trigger: TGCTATTGAAATGGCTGAAGGGGCTCCTCCTCTGTGTAAGCTTCAGCCTCTGGAAGCCCTTTGTGTTATTCTACGGGAAGCCGCTCCCAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp GAAATAGTTCTGAACCTCCAACATAGCAAGCTCCATTTCCTCAGCGATAAGGTACAGCCTGGCCCTGCCTaGGCTGTTCAGGTGCCCTGT +
Preference number: 5 (lower is better)
Translates to: EIVLNLQHSKLHFLSDKVQPGPA*AVQVPC
Trigger: ACAGGGCACCTGAACAGCCAAGGCAGGGCCAGGCTG...TACCTTATCGCTGAGGAAATGGAGCTTGCTATGTTGGAGGTTCAGAACTATTTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS GCA 90 bp CCGGTTGCAAGGCATGGGAGCAGATCTCTCATGGACCTCATTTCCTaGAGGATTTGCAGCGTGTGGTTCTATTTGGACTTCAGCCTGAAT +
Preference number: 5 (lower is better)
Translates to: PVARHGSRSLMDLIS*RICSVWFYLDFSLN
Trigger: ATTCAGGCTGAAGTCCAAATAGAACCACACGCTGCAAATCCTGCAGGAAATGAGGTCCATGAGAGATCTGCTCCCATGCCTTGCAACCGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CCA 90 bp CCAATGGCTTTATCTAGTGAGAATATTCCAGTTGGATCCGGCAACTaGCCAAGATCTGTCACCTCCTTGTCCCTCCAACTCCCAGGTCCT +
Preference number: 5 (lower is better)
Translates to: PMALSSENIPVGSGN*PRSVTSLSLQLPGP
Trigger: AGGACCTGGGAGTTGGAGGGACAAGGAGGTGACAGATCTTGGCCAGTTGCCGGATCCAACTGGAATATTCTCACTAGATAAAGCCATTGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CCA 90 bp CTGCGGCTGGGCTTCTTCCAAAGAAGGCTCTTCCTCACCAACACTTaGAGAAAATTTCACACGATGTGTGCGATTCCGGTTGCAAGGCAT +
Preference number: 5 (lower is better)
Translates to: LRLGFFQRRLFLTNT*RKFHTMCAIPVARH
Trigger: ATGCCTTGCAACCGGAATCGCACACATCGTGTGAAATTTTCTCCAAGTGTTGGTGAGGAAGAGCCTTCTTTGGAAGAAGCCCAGCCGCAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp TCAAGCTCTGTTTCTTCACTAACACTTTGGCCTTCAAAGCCCAGCCCTGCATTGCCACTGGATTTGACTTaGGGAGCGGCTTCCCGTAGA +
Preference number: 5 (lower is better)
Translates to: SSSVSSLTLWPSKPSPALPLDLT*GAASRR
Trigger: TCTACGGGAAGCCGCTCCCAAAGTCAAATCCAGTGG...CAATGCAGGGCTGGGCTTTGAAGGCCAAAGTGTTAGTGAAGAAACAGAGCTTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp AGTCCCAGTCTGCTTTTTCACCTGCCAAAGGCTATAAAACTCCCACACAGATTTGATCAGGTAGCCACCTaGGCTGAGGGGGCTCTCCAT +
Preference number: 5 (lower is better)
Translates to: SPSLLFHLPKAIKLPHRFDQVAT*AEGALH
Trigger: ATGGAGAGCCCCCTCAGCCAAGGTGGCTACCTGATC...AAATCTGTGTGGGAGTTTTATAGCCTTTGGCAGGTGAAAAAGCAGACTGGGACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS GCA 90 bp CACCAACACTTGGAGAAAATTTCACACGATGTGTGCGATTCCGGTTaGAAGGCATGGGAGCAGATCTCTCATGGACCTCATTTCCTGCAG +
Preference number: 5 (lower is better)
Translates to: HQHLEKISHDVCDSG*KAWEQISHGPHFLQ
Trigger: CTGCAGGAAATGAGGTCCATGAGAGATCTGCTCCCATGCCTTGCAACCGGAATCGCACACATCGTGTGAAATTTTCTCCAAGTGTTGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS GCA 90 bp AAGGCTCTTCCTCACCAACACTTGGAGAAAATTTCACACGATGTGTaGGATTCCGGTTGCAAGGCATGGGAGCAGATCTCTCATGGACCT +
Preference number: 5 (lower is better)
Translates to: KALPHQHLEKISHDV*DSGCKAWEQISHGP
Trigger: AGGTCCATGAGAGATCTGCTCCCATGCCTTGCAACCGGAATCGCACACATCGTGTGAAATTTTCTCCAAGTGTTGGTGAGGAAGAGCCTT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CCA 90 bp GGCATCAGCATCATAGAGTTCAACATAATCACCATCTTCTTCAGGTaGCCGAGCGGGACGTGTAGGCATTATCCAGTCATCCCAGAAGAT +
Preference number: 5 (lower is better)
Translates to: GISIIEFNIITIFFR*PSGTCRHYPVIPED
Trigger: ATCTTCTGGGATGACTGGATAATGCCTACACGTCCCGCTCGGCCACCTGAAGAAGATGGTGATTATGTTGAACTCTATGATGCTGATGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CCA 90 bp CATGTTGATCCCGTCCAAATGCTCCATTCTCTTCATTCCTTCCATTaGCCTCCCTGTTTCTGTTACCTCTTCCATTGCCCCTATTGGCTC +
Preference number: 5 (lower is better)
Translates to: HVDPVQMLHSLHSFH*PPCFCYLFHCPYWL
Trigger: GAGCCAATAGGGGCAATGGAAGAGGTAACAGAAACAGGGAGGCCAATGGAAGGAATGAAGAGAATGGAGCATTTGGACGGGATCAACATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp GATAAAATTCTGATGTTAGGATTCAATGGCATGTGTGTGGTGGATGTAAAGGTTCAGCCTGGCCCTGCCTaGGCTGTTCAGGTGCCCTGT +
Preference number: 5 (lower is better)
Translates to: DKILMLGFNGMCVVDVKVQPGPA*AVQVPC
Trigger: ACAGGGCACCTGAACAGCCAAGGCAGGGCCAGGCTG...AACCTTTACATCCACCACACACATGCCATTGAATCCTAACATCAGAATTTTATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp TCTGATGTTAGGATTCAATGGCATGTGTGTGGTGGATGTAAAGGTTGTAGTCGATTCCTGCACCTCAGCTaGCTCAGGCTCCCTATCCTC +
Preference number: 5 (lower is better)
Translates to: SDVRIQWHVCGGCKGCSRFLHLS*LRLPIL
Trigger: GAGGATAGGGAGCCTGAGCAAGCTGAGGTGCAGGAA...TCGACTACAACCTTTACATCCACCACACACATGCCATTGAATCCTAACATCAGA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp AGTCCCAGTCTGCTTTTTCACCTGCCAAAGGCTATAAAACTCCCACACAGATTTGAGCTGCTCCACGACTaGAATCTGCCGGAATGGTCT +
Preference number: 5 (lower is better)
Translates to: SPSLLFHLPKAIKLPHRFELLHD*NLPEWS
Trigger: AGACCATTCCGGCAGATTCAAGTCGTGGAGCAGCTC...AAATCTGTGTGGGAGTTTTATAGCCTTTGGCAGGTGAAAAAGCAGACTGGGACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CCA 90 bp CCCGTCTGTAGACAAATTTTCCAAGAAGATCTGCAGCGGACCAAGTaGTTTTGTGACAAATGCATTTGGTGCTCGAAGCAAGTCCCTGGA +
Preference number: 5 (lower is better)
Translates to: PVCRQIFQEDLQRTK*FCDKCIWCSKQVPG
Trigger: TCCAGGGACTTGCTTCGAGCACCAAATGCATTTGTCACAAAACCACTTGGTCCGCTGCAGATCTTCTTGGAAAATTTGTCTACAGACGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp AATCAAACCATTCTCTCTCCAGTACGGCTCCTAACCTGCCAAAATGTTCACACTCATTACCATCCAAAGTaGGTGCTGATGGCCAGGAGG +
Preference number: 5 (lower is better)
Translates to: NQTILSPVRLLTCQNVHTHYHPK*VLMARR
Trigger: CCTCCTGGCCATCAGCACCAACTTTGGATGGTAATG...AGTGTGAACATTTTGGCAGGTTAGGAGCCGTACTGGAGAGAGAATGGTTTGATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp CCCAGTCTGCTTTTTCACCTGCCAAAGGCTATAAAACTCCCACACAGATTTACACATTACCATCCAAAGTaGGTGCTGATGGCCAGGAGG +
Preference number: 5 (lower is better)
Translates to: PSLLFHLPKAIKLPHRFTHYHPK*VLMARR
Trigger: CCTCCTGGCCATCAGCACCAACTTTGGATGGTAATG...TGTAAATCTGTGTGGGAGTTTTATAGCCTTTGGCAGGTGAAAAAGCAGACTGGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp TCTGATGTTAGGATTCAATGGCATGTGTGTGGTGGATGTAAAGGTTGTAGTCGACCACTGGATTTGACTTaGGGAGCGGCTTCCCGTAGA +
Preference number: 5 (lower is better)
Translates to: SDVRIQWHVCGGCKGCSRPLDLT*GAASRR
Trigger: TCTACGGGAAGCCGCTCCCAAAGTCAAATCCAGTGG...TCGACTACAACCTTTACATCCACCACACACATGCCATTGAATCCTAACATCAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp TCTTCAGATTTGAGAAGCAGAGCTAGAGGACTTATTGAGGTATACTTTGTGGTAGATCAGGTAGCCACCTaGGCTGAGGGGGCTCTCCAT +
Preference number: 5 (lower is better)
Translates to: SSDLRSRARGLIEVYFVVDQVAT*AEGALH
Trigger: ATGGAGAGCCCCCTCAGCCAAGGTGGCTACCTGATC...TACCACAAAGTATACCTCAATAAGTCCTCTAGCTCTGCTTCTCAAATCTGAAGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp GAGCTCTTCAAGTTTTCCAAGGCTCATAAGGTAAACCCGGCTGTGGTCATTGCTCAGTTGTTGAAGTTCTaGGTCCTGTGGGTCTTCTTG +
Preference number: 5 (lower is better)
Translates to: ELFKFSKAHKVNPAVVIAQLLKF*VLWVFL
Trigger: CAAGAAGACCCACAGGACCAAGAACTTCAACAACTG...AGCAATGACCACAGCCGGGTTTACCTTATGAGCCTTGGAAAACTTGAAGAGCTC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp TCTGTTTCTTCACTAACACTTTGGCCTTCAAAGCCCAGCCCTGCATTGGTAATCGTGCCCAGCAACAAATaGACTCCCCACAAAGAACCA +
Preference number: 5 (lower is better)
Translates to: SVSSLTLWPSKPSPALVIVPSNK*TPHKEP
Trigger: TGGTTCTTTGTGGGGAGTCAATTTGTTGCTGGGCAC...GATTACCAATGCAGGGCTGGGCTTTGAAGGCCAAAGTGTTAGTGAAGAAACAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp TCTGATGTTAGGATTCAATGGCATGTGTGTGGTGGATGTAAAGGTTGTAGTCGAGAGGCAGCTTCAGCATaGAGGGAGAGCATCACACCA +
Preference number: 5 (lower is better)
Translates to: SDVRIQWHVCGGCKGCSREAASA*RESITP
Trigger: TGGTGTGATGCTCTCCCTCAATGCTGAAGCTGCCTC...TCGACTACAACCTTTACATCCACCACACACATGCCATTGAATCCTAACATCAGA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
CDS-3UTR CAA 90 bp AAAACTAAACTGCCACAAAATCAAACCATTCTCTCTCCAGTACGGCTCCTAACCGAGGCAGCTTCAGCATaGAGGGAGAGCATCACACCA +
Preference number: 5 (lower is better)
Translates to: KTKLPQNQTILSPVRLLTEAASA*RESITP
Trigger: TGGTGTGATGCTCTCCCTCAATGCTGAAGCTGCCTC...GGTTAGGAGCCGTACTGGAGAGAGAATGGTTTGATTTTGTGGCAGTTTAGTTTT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000113052.8
CDS-3UTR CAA 90 bp CGATCACTGGACCCCTTTAAACAGCATAGCTTCTATGGAGCTCTTCAAGTTTTCGTGAGAATATTCCAGTaGGATCCGGCAACTGGCCAA +
Preference number: 5 (lower is better)
Translates to: RSLDPFKQHSFYGALQVFVRIFQ*DPATGQ
Trigger: TTGGCCAGTTGCCGGATCCAACTGGAATATTCTCAC...GAAAACTTGAAGAGCTCCATAGAAGCTATGCTGTTTAAAGGGGTCCAGTGATCG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp TCTGTTTCTTCACTAACACTTTGGCCTTCAAAGCCCAGCCCTGCATTGGTAATCTATTTCTCCGTCCATTaGTTCTGCTCACTTGGGCAC +
Preference number: 5 (lower is better)
Translates to: SVSSLTLWPSKPSPALVIYFSVH*FCSLGH
Trigger: GTGCCCAAGTGAGCAGAACAAATGGACGGAGAAATA...GATTACCAATGCAGGGCTGGGCTTTGAAGGCCAAAGTGTTAGTGAAGAAACAGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp TTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACATAGAGCTTGCTCACCTGGGCGTGCACTaGCACTACCTCAGGTTCCTT +
Preference number: 5 (lower is better)
Translates to: LQSLCKTDCTPLEYIELAHLGVH*HYLRFL
Trigger: AAGGAACCTGAGGTAGTGCAAGTGCACGCCCAGGTG...AGCAAGCTCTATGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp AATGTTCCCCTTGATCTATGTAATTTTCTTTGCGCACACAGGTTGTTCAACCTTCACCTGGGCGTGCACTaGCACTACCTCAGGTTCCTT +
Preference number: 5 (lower is better)
Translates to: NVPLDLCNFLCAHRLFNLHLGVH*HYLRFL
Trigger: AAGGAACCTGAGGTAGTGCAAGTGCACGCCCAGGTG...AAGGTTGAACAACCTGTGTGCGCAAAGAAAATTACATAGATCAAGGGGAACATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp GAAATAGTTCTGAACCTCCAACATAGCAAGCTCCATTTCCTCAGCGATAAGGTACTGTTACCTCTTCCATaGCCCCTATTGGCTCCATGG +
Preference number: 5 (lower is better)
Translates to: EIVLNLQHSKLHFLSDKVLLPLP*PLLAPW
Trigger: CCATGGAGCCAATAGGGGCAATGGAAGAGGTAACAG...TACCTTATCGCTGAGGAAATGGAGCTTGCTATGTTGGAGGTTCAGAACTATTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp TTGTCACCACGGGCACAGAGAAATCTCAGTTTCTTGATTGAGCGGCGCTTCAGCTGTTGTTTCTTCATGTaGAAGGACACTGAAGTGTTC +
Preference number: 5 (lower is better)
Translates to: LSPRAQRNLSFLIERRFSCCFFM*KDTEVF
Trigger: GAACACTTCAGTGTCCTTCAACATGAAGAAACAACA...GCTGAAGCGCCGCTCAATCAAGAAACTGAGATTTCTCTGTGCCCGTGGTGACAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS GCA 90 bp ATCATGGCCATTGGCACCATCACGAGGATCTTCATAAGCACCGTTTaGAACTTCTTCATCACCATTAGCATTGGCATCAGCATCATAGAG +
Preference number: 5 (lower is better)
Translates to: IMAIGTITRIFISTV*NFFITISIGISIIE
Trigger: CTCTATGATGCTGATGCCAATGCTAATGGTGATGAAGAAGTTGCAAACGGTGCTTATGAAGATCCTCGTGATGGTGCCAATGGCCATGAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp CAACCGGAAAAGTACTTCAAAGATCCCATTGAGAGTGTGTGGCATTACTTACTCTACTTCCTCAGCAGGTaGAGTTCCGTCCTAAGATCC +
Preference number: 5 (lower is better)
Translates to: QPEKYFKDPIESVWHYLLYFLSR*SSVLRS
Trigger: GGATCTTAGGACGGAACTCAACCTGCTGAGGAAGTA...GAGTAAGTAATGCCACACACTCTCAATGGGATCTTTGAAGTACTTTTCCGGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000113052.8
CDS-3UTR CAA 90 bp GAGCTCTTCAAGTTTTCCAAGGCTCATAAGGTAAACCCGGCTGTGGTCATTGCTAATCATAGGAACACCTaGGGTCCTCATCACAATGAA +
Preference number: 5 (lower is better)
Translates to: ELFKFSKAHKVNPAVVIANHRNT*GPHHNE
Trigger: TTCATTGTGATGAGGACCCAAGGTGTTCCTATGATT...AGCAATGACCACAGCCGGGTTTACCTTATGAGCCTTGGAAAACTTGAAGAGCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp AGTAACAAAAGTTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACAGATCAGGTAGCCACCTaGGCTGAGGGGGCTCTCCAT +
Preference number: 5 (lower is better)
Translates to: SNKSYKVCAKQIVHHWSTDQVAT*AEGALH
Trigger: ATGGAGAGCCCCCTCAGCCAAGGTGGCTACCTGATC...TGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAACTTTTGTTACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp TCCAAATCTTCATTCATTTCTGGCACAAAGGTACCAGGAAATGATGTACTATCATTCCTGCACCTCAGCTaGCTCAGGCTCCCTATCCTC +
Preference number: 5 (lower is better)
Translates to: SKSSFISGTKVPGNDVLSFLHLS*LRLPIL
Trigger: GAGGATAGGGAGCCTGAGCAAGCTGAGGTGCAGGAA...TGATAGTACATCATTTCCTGGTACCTTTGTGCCAGAAATGAATGAAGATTTGGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp GAGCTCTTCAAGTTTTCCAAGGCTCATAAGGTAAACCCGGCTGTGGTCATTGCTCTTCCTCACCAACACTaGGAGAAAATTTCACACGAT +
Preference number: 5 (lower is better)
Translates to: ELFKFSKAHKVNPAVVIALPHQH*EKISHD
Trigger: ATCGTGTGAAATTTTCTCCAAGTGTTGGTGAGGAAG...AGCAATGACCACAGCCGGGTTTACCTTATGAGCCTTGGAAAACTTGAAGAGCTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp TTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACATAGAGCTTGCTGAGCTGCTCCACGACTaGAATCTGCCGGAATGGTCT +
Preference number: 5 (lower is better)
Translates to: LQSLCKTDCTPLEYIELAELLHD*NLPEWS
Trigger: AGACCATTCCGGCAGATTCAAGTCGTGGAGCAGCTC...AGCAAGCTCTATGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp AATGTTCCCCTTGATCTATGTAATTTTCTTTGCGCACACAGGTTGTTCAACCTTGAGCTGCTCCACGACTaGAATCTGCCGGAATGGTCT +
Preference number: 5 (lower is better)
Translates to: NVPLDLCNFLCAHRLFNLELLHD*NLPEWS
Trigger: AGACCATTCCGGCAGATTCAAGTCGTGGAGCAGCTC...AAGGTTGAACAACCTGTGTGCGCAAAGAAAATTACATAGATCAAGGGGAACATT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS TCA 90 bp AGTTTAACAATTTCTGCCTTTCCACTTCGGTCCATCAGATACAGATaGGATTGGGTGCCCAGCAACAAATTGACTCCCCACAAAGAACCA +
Preference number: 5 (lower is better)
Translates to: SLTISAFPLRSIRYR*DWVPSNKLTPHKEP
Trigger: TGGTTCTTTGTGGGGAGTCAATTTGTTGCTGGGCACCCAATCTCATCTGTATCTGATGGACCGAAGTGGAAAGGCAGAAATTGTTAAACT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp GAGTCATTAGGAAAATCCAAATCTTCATTCATTTCTGGCACAAAGGTACCAGGAGTCCCGGTGAATTACTaGGTGTGCATGAAGGTGAGC +
Preference number: 5 (lower is better)
Translates to: ESLGKSKSSFISGTKVPGVPVNY*VCMKVS
Trigger: GCTCACCTTCATGCACACCAAGTAATTCACCGGGAC...TCCTGGTACCTTTGTGCCAGAAATGAATGAAGATTTGGATTTTCCTAATGACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp AATCAAACCATTCTCTCTCCAGTACGGCTCCTAACCTGCCAAAATGTTCACACTATTTGTTCTGCTCACTaGGGCACTCACTCCAAAATC +
Preference number: 5 (lower is better)
Translates to: NQTILSPVRLLTCQNVHTICSAH*GTHSKI
Trigger: GATTTTGGAGTGAGTGCCCAAGTGAGCAGAACAAAT...AGTGTGAACATTTTGGCAGGTTAGGAGCCGTACTGGAGAGAGAATGGTTTGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp GAAATAGTTCTGAACCTCCAACATAGCAAGCTCCATTTCCTCAGCGATAAGGTATATTTCTCCGTCCATTaGTTCTGCTCACTTGGGCAC +
Preference number: 5 (lower is better)
Translates to: EIVLNLQHSKLHFLSDKVYFSVH*FCSLGH
Trigger: GTGCCCAAGTGAGCAGAACAAATGGACGGAGAAATA...TACCTTATCGCTGAGGAAATGGAGCTTGCTATGTTGGAGGTTCAGAACTATTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp AAAACTAAACTGCCACAAAATCAAACCATTCTCTCTCCAGTACGGCTCCTAACCTATTTCTCCGTCCATTaGTTCTGCTCACTTGGGCAC +
Preference number: 5 (lower is better)
Translates to: KTKLPQNQTILSPVRLLTYFSVH*FCSLGH
Trigger: GTGCCCAAGTGAGCAGAACAAATGGACGGAGAAATA...GGTTAGGAGCCGTACTGGAGAGAGAATGGTTTGATTTTGTGGCAGTTTAGTTTT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp TCCAAATCTTCATTCATTTCTGGCACAAAGGTACCAGGAAATGATGTACTATCACCACTGGATTTGACTTaGGGAGCGGCTTCCCGTAGA +
Preference number: 5 (lower is better)
Translates to: SKSSFISGTKVPGNDVLSPLDLT*GAASRR
Trigger: TCTACGGGAAGCCGCTCCCAAAGTCAAATCCAGTGG...TGATAGTACATCATTTCCTGGTACCTTTGTGCCAGAAATGAATGAAGATTTGGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp TCTGATGTTAGGATTCAATGGCATGTGTGTGGTGGATGTAAAGGTTGTAGTCGACAGTTGTTGAAGTTCTaGGTCCTGTGGGTCTTCTTG +
Preference number: 5 (lower is better)
Translates to: SDVRIQWHVCGGCKGCSRQLLKF*VLWVFL
Trigger: CAAGAAGACCCACAGGACCAAGAACTTCAACAACTG...TCGACTACAACCTTTACATCCACCACACACATGCCATTGAATCCTAACATCAGA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp GTAGCAGTTACCATAGGTGAGGAAATATCACCTATTTTTGGCGTCTATAAAATATTCCTGCACCTCAGCTaGCTCAGGCTCCCTATCCTC +
Preference number: 5 (lower is better)
Translates to: VAVTIGEEISPIFGVYKIFLHLS*LRLPIL
Trigger: GAGGATAGGGAGCCTGAGCAAGCTGAGGTGCAGGAA...TATTTTATAGACGCCAAAAATAGGTGATATTTCCTCACCTATGGTAACTGCTAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp TTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTAGACACCTGGGCGTGCACTaGCACTACCTCAGGTTCCTT +
Preference number: 5 (lower is better)
Translates to: LKIIILLAHSSDLRSRARHLGVH*HYLRFL
Trigger: AAGGAACCTGAGGTAGTGCAAGTGCACGCCCAGGTG...TCTAGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp GAGCTCTTCAAGTTTTCCAAGGCTCATAAGGTAAACCCGGCTGTGGTCATTGCTGGACTTCAGCCTGAATaGAATGAAACACTTCATCAT +
Preference number: 5 (lower is better)
Translates to: ELFKFSKAHKVNPAVVIAGLQPE*NETLHH
Trigger: ATGATGAAGTGTTTCATTCAATTCAGGCTGAAGTCC...AGCAATGACCACAGCCGGGTTTACCTTATGAGCCTTGGAAAACTTGAAGAGCTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp AATCAAACCATTCTCTCTCCAGTACGGCTCCTAACCTGCCAAAATGTTCACACTCAGATACAGATGAGATaGGGTGCCCAGCAACAAATT +
Preference number: 5 (lower is better)
Translates to: NQTILSPVRLLTCQNVHTQIQMR*GAQQQI
Trigger: AATTTGTTGCTGGGCACCCAATCTCATCTGTATCTG...AGTGTGAACATTTTGGCAGGTTAGGAGCCGTACTGGAGAGAGAATGGTTTGATT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp AGTCCCAGTCTGCTTTTTCACCTGCCAAAGGCTATAAAACTCCCACACAGATTTCGAAGTCTGTTCTTTTaGCCAGAGATGGTAATCAGC +
Preference number: 5 (lower is better)
Translates to: SPSLLFHLPKAIKLPHRFRSLFF*PEMVIS
Trigger: GCTGATTACCATCTCTGGCAAAAAGAACAGACTTCG...AAATCTGTGTGGGAGTTTTATAGCCTTTGGCAGGTGAAAAAGCAGACTGGGACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp TTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACATAGAGCTTGCTACCCGGCTGTGGTCATaGCTCAGTGTAGAAGCAAAG +
Preference number: 5 (lower is better)
Translates to: LQSLCKTDCTPLEYIELATRLWS*LSVEAK
Trigger: CTTTGCTTCTACACTGAGCAATGACCACAGCCGGGT...AGCAAGCTCTATGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
CDS TCA 90 bp CCATTACCATCCAAAGTTGGTGCTGATGGCCAGGAGGATTCAGCTTaGAAAATGCTCCATAGAAGGTCACAATGTTTTTGTGGAAAGAGT +
Preference number: 5 (lower is better)
Translates to: PLPSKVGADGQEDSA*KMLHRRSQCFCGKS
Trigger: ACTCTTTCCACAAAAACATTGTGACCTTCTATGGAGCATTTTTCAAGCTGAATCCTCCTGGCCATCAGCACCAACTTTGGATGGTAATGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS GCA 90 bp CATCCAAAGTTGGTGCTGATGGCCAGGAGGATTCAGCTTGAAAAATaGTCCATAGAAGGTCACAATGTTTTTGTGGAAAGAGTACTTCCT +
Preference number: 5 (lower is better)
Translates to: HPKLVLMARRIQLEK*SIEGHNVFVERVLP
Trigger: AGGAAGTACTCTTTCCACAAAAACATTGTGACCTTCTATGGAGCATTTTTCAAGCTGAATCCTCCTGGCCATCAGCACCAACTTTGGATG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS GCA 90 bp ATCTGGTCTCTTAAACCGGTTCGCTGGATCAGCTGCCTGTATTTTTaGCAATATTCGTATATAGGCTTCATAGGACATGTAGTCTCCTTC +
Preference number: 5 (lower is better)
Translates to: IWSLKPVRWISCLYF*QYSYIGFIGHVVSF
Trigger: GAAGGAGACTACATGTCCTATGAAGCCTATATACGAATATTGGCAAAAATACAGGCAGCTGATCCAGCGAACCGGTTTAAGAGACCAGAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS GCA 90 bp ATGAAGGAGCTCATCTGGTCTCTTAAACCGGTTCGCTGGATCAGCTaGCTGTATTTTTGCCAATATTCGTATATAGGCTTCATAGGACAT +
Preference number: 5 (lower is better)
Translates to: MKELIWSLKPVRWIS*LYFCQYSYIGFIGH
Trigger: ATGTCCTATGAAGCCTATATACGAATATTGGCAAAAATACAGGCAGCTGATCCAGCGAACCGGTTTAAGAGACCAGATGAGCTCCTTCAT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS CCA 90 bp CTAAGATCCTCTTCTTCATCGCTGTATCTCCATCCAACAGACTTTTaGTATTTATTCACTCTCACCCGTCTTCCTATCTCAGGCAAAGGA +
Preference number: 5 (lower is better)
Translates to: LRSSSSSLYLHPTDF*YLFTLTRLPISGKG
Trigger: TCCTTTGCCTGAGATAGGAAGACGGGTGAGAGTGAATAAATACCAAAAGTCTGTTGGATGGAGATACAGCGATGAAGAAGAGGATCTTAG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CCA 90 bp GGTAATCAGCAAATTGAGCTGCTCCACGACTTGAATCTGCCGGAATaGTCTTCGCTTTATAAGTTTAACAATTTCTGCCTTTCCACTTCG +
Preference number: 5 (lower is better)
Translates to: GNQQIELLHDLNLPE*SSLYKFNNFCLSTS
Trigger: CGAAGTGGAAAGGCAGAAATTGTTAAACTTATAAAGCGAAGACCATTCCGGCAGATTCAAGTCGTGGAGCAGCTCAATTTGCTGATTACC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp GAGTCATTAGGAAAATCCAAATCTTCATTCATTTCTGGCACAAAGGTACCAGGAGTGAGAATATTCCAGTaGGATCCGGCAACTGGCCAA +
Preference number: 5 (lower is better)
Translates to: ESLGKSKSSFISGTKVPGVRIFQ*DPATGQ
Trigger: TTGGCCAGTTGCCGGATCCAACTGGAATATTCTCAC...TCCTGGTACCTTTGTGCCAGAAATGAATGAAGATTTGGATTTTCCTAATGACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp AATGTTCCCCTTGATCTATGTAATTTTCTTTGCGCACACAGGTTGTTCAACCTTGTGAGAATATTCCAGTaGGATCCGGCAACTGGCCAA +
Preference number: 5 (lower is better)
Translates to: NVPLDLCNFLCAHRLFNLVRIFQ*DPATGQ
Trigger: TTGGCCAGTTGCCGGATCCAACTGGAATATTCTCAC...AAGGTTGAACAACCTGTGTGCGCAAAGAAAATTACATAGATCAAGGGGAACATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp AATGTTCCCCTTGATCTATGTAATTTTCTTTGCGCACACAGGTTGTTCAACCTTTACTTCCTCAGCAGGTaGAGTTCCGTCCTAAGATCC +
Preference number: 5 (lower is better)
Translates to: NVPLDLCNFLCAHRLFNLYFLSR*SSVLRS
Trigger: GGATCTTAGGACGGAACTCAACCTGCTGAGGAAGTA...AAGGTTGAACAACCTGTGTGCGCAAAGAAAATTACATAGATCAAGGGGAACATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp GGTCTTCAGTTGTGTATTTATTGTGAAAAAGAATTGGGTAGAATGTTCCCCTTGCATTACCATCCAAAGTaGGTGCTGATGGCCAGGAGG +
Preference number: 5 (lower is better)
Translates to: GLQLCIYCEKELGRMFPLHYHPK*VLMARR
Trigger: CCTCCTGGCCATCAGCACCAACTTTGGATGGTAATG...CAAGGGGAACATTCTACCCAATTCTTTTTCACAATAAATACACAACTGAAGACC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp TCTTCATTCATTTCTGGCACAAAGGTACCAGGAAATGATGTACTATCAGGAAATGTCCCGGTGAATTACTaGGTGTGCATGAAGGTGAGC +
Preference number: 5 (lower is better)
Translates to: SSFISGTKVPGNDVLSGNVPVNY*VCMKVS
Trigger: GCTCACCTTCATGCACACCAAGTAATTCACCGGGAC...ATTTCCTGATAGTACATCATTTCCTGGTACCTTTGTGCCAGAAATGAATGAAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp TCTGATGTTAGGATTCAATGGCATGTGTGTGGTGGATGTAAAGGTTGTAGTCGAATTTGTTCTGCTCACTaGGGCACTCACTCCAAAATC +
Preference number: 5 (lower is better)
Translates to: SDVRIQWHVCGGCKGCSRICSAH*GTHSKI
Trigger: GATTTTGGAGTGAGTGCCCAAGTGAGCAGAACAAAT...TCGACTACAACCTTTACATCCACCACACACATGCCATTGAATCCTAACATCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp AATCAAACCATTCTCTCTCCAGTACGGCTCCTAACCTGCCAAAATGTTCACACTAATCATAGGAACACCTaGGGTCCTCATCACAATGAA +
Preference number: 5 (lower is better)
Translates to: NQTILSPVRLLTCQNVHTNHRNT*GPHHNE
Trigger: TTCATTGTGATGAGGACCCAAGGTGTTCCTATGATT...AGTGTGAACATTTTGGCAGGTTAGGAGCCGTACTGGAGAGAGAATGGTTTGATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp AATGTTCCCCTTGATCTATGTAATTTTCTTTGCGCACACAGGTTGTTCAACCTTTGCCTTCTGCAGTTGTaGAAGTTCTTGGTCCTGTGG +
Preference number: 5 (lower is better)
Translates to: NVPLDLCNFLCAHRLFNLCLLQL*KFLVLW
Trigger: CCACAGGACCAAGAACTTCAACAACTGCAGAAGGCA...AAGGTTGAACAACCTGTGTGCGCAAAGAAAATTACATAGATCAAGGGGAACATT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp TCTTCAGATTTGAGAAGCAGAGCTAGAGGACTTATTGAGGTATACTTTGTGGTATGCCTTCTGCAGTTGTaGAAGTTCTTGGTCCTGTGG +
Preference number: 5 (lower is better)
Translates to: SSDLRSRARGLIEVYFVVCLLQL*KFLVLW
Trigger: CCACAGGACCAAGAACTTCAACAACTGCAGAAGGCA...TACCACAAAGTATACCTCAATAAGTCCTCTAGCTCTGCTTCTCAAATCTGAAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp GAAATAGTTCTGAACCTCCAACATAGCAAGCTCCATTTCCTCAGCGATAAGGTAAAAGCTCTGGCTGCATaGTCTCCAAAGACTCCAAAA +
Preference number: 5 (lower is better)
Translates to: EIVLNLQHSKLHFLSDKVKALAA*SPKTPK
Trigger: TTTTGGAGTCTTTGGAGACAATGCAGCCAGAGCTTT...TACCTTATCGCTGAGGAAATGGAGCTTGCTATGTTGGAGGTTCAGAACTATTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp TCTGATGTTAGGATTCAATGGCATGTGTGTGGTGGATGTAAAGGTTGTAGTCGAAAAGCTCTGGCTGCATaGTCTCCAAAGACTCCAAAA +
Preference number: 5 (lower is better)
Translates to: SDVRIQWHVCGGCKGCSRKALAA*SPKTPK
Trigger: TTTTGGAGTCTTTGGAGACAATGCAGCCAGAGCTTT...TCGACTACAACCTTTACATCCACCACACACATGCCATTGAATCCTAACATCAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp CTTCTATTACAAAGTATAATGAGGAGGAAAGGACATAGTCCCAGTCTGCTTTTTCTGTTACCTCTTCCATaGCCCCTATTGGCTCCATGG +
Preference number: 5 (lower is better)
Translates to: LLLQSIMRRKGHSPSLLFLLPLP*PLLAPW
Trigger: CCATGGAGCCAATAGGGGCAATGGAAGAGGTAACAG...AAAAAGCAGACTGGGACTATGTCCTTTCCTCCTCATTATACTTTGTAATAGAAG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp GAGTCATTAGGAAAATCCAAATCTTCATTCATTTCTGGCACAAAGGTACCAGGAGTGCCCAGCAACAAATaGACTCCCCACAAAGAACCA +
Preference number: 5 (lower is better)
Translates to: ESLGKSKSSFISGTKVPGVPSNK*TPHKEP
Trigger: TGGTTCTTTGTGGGGAGTCAATTTGTTGCTGGGCAC...TCCTGGTACCTTTGTGCCAGAAATGAATGAAGATTTGGATTTTCCTAATGACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp TCTGTTTCTTCACTAACACTTTGGCCTTCAAAGCCCAGCCCTGCATTGGTAATCCAACCGCAATGTATGTaGTTTCTTCATGTTGAAGGA +
Preference number: 5 (lower is better)
Translates to: SVSSLTLWPSKPSPALVIQPQCM*FLHVEG
Trigger: TCCTTCAACATGAAGAAACAACATACATTGCGGTTG...GATTACCAATGCAGGGCTGGGCTTTGAAGGCCAAAGTGTTAGTGAAGAAACAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp TCTTCATTCATTTCTGGCACAAAGGTACCAGGAAATGATGTACTATCAGGAAATACCCGGCTGTGGTCATaGCTCAGTGTAGAAGCAAAG +
Preference number: 5 (lower is better)
Translates to: SSFISGTKVPGNDVLSGNTRLWS*LSVEAK
Trigger: CTTTGCTTCTACACTGAGCAATGACCACAGCCGGGT...ATTTCCTGATAGTACATCATTTCCTGGTACCTTTGTGCCAGAAATGAATGAAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
CDS-3UTR CAA 90 bp TCTGTTTCTTCACTAACACTTTGGCCTTCAAAGCCCAGCCCTGCATTGGTAATCTTAAACTCTGATTTCTaGTCATCCTCACTACATCAG +
Preference number: 5 (lower is better)
Translates to: SVSSLTLWPSKPSPALVILNSDF*SSSLHQ
Trigger: CTGATGTAGTGAGGATGACAAGAAATCAGAGTTTAA...GATTACCAATGCAGGGCTGGGCTTTGAAGGCCAAAGTGTTAGTGAAGAAACAGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp GAAATAGTTCTGAACCTCCAACATAGCAAGCTCCATTTCCTCAGCGATAAGGTAAATCATAGGAACACCTaGGGTCCTCATCACAATGAA +
Preference number: 5 (lower is better)
Translates to: EIVLNLQHSKLHFLSDKVNHRNT*GPHHNE
Trigger: TTCATTGTGATGAGGACCCAAGGTGTTCCTATGATT...TACCTTATCGCTGAGGAAATGGAGCTTGCTATGTTGGAGGTTCAGAACTATTTC
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp TCCAAATCTTCATTCATTTCTGGCACAAAGGTACCAGGAAATGATGTACTATCATGCCTTCTGCAGTTGTaGAAGTTCTTGGTCCTGTGG +
Preference number: 5 (lower is better)
Translates to: SKSSFISGTKVPGNDVLSCLLQL*KFLVLW
Trigger: CCACAGGACCAAGAACTTCAACAACTGCAGAAGGCA...TGATAGTACATCATTTCCTGGTACCTTTGTGCCAGAAATGAATGAAGATTTGGA
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp AAATGTTCACACTTCCAACCAGGATTCTCATTAAAACTGGCTTTCTGGACTGCCTGGGTCTTAGTCGTTTaGCTATTGCTTTCCTTAGAC +
Preference number: 5 (lower is better)
Translates to: KCSHFQPGFSLKLAFWTAWVLVV*LLLSLD
Trigger: GTCTAAGGAAAGCAATAGCAAAACGACTAAGACCCA...GGCAGTCCAGAAAGCCAGTTTTAATGAGAATCCTGGTTGGAAGTGTGAACATTT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp AATGTTCCCCTTGATCTATGTAATTTTCTTTGCGCACACAGGTTGTTCAACCTTAGCCTACCCATTCATTaGTCAAGTACACAGGAGGTG +
Preference number: 5 (lower is better)
Translates to: NVPLDLCNFLCAHRLFNLSLPIH*SSTQEV
Trigger: CACCTCCTGTGTACTTGACAAATGAATGGGTAGGCT...AAGGTTGAACAACCTGTGTGCGCAAAGAAAATTACATAGATCAAGGGGAACATT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp TTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACATAGAGCTTGCTAGAAATCTCAGTTTCTaGATTGAGCGGCGCTTCAGC +
Preference number: 5 (lower is better)
Translates to: LQSLCKTDCTPLEYIELARNLSF*IERRFS
Trigger: GCTGAAGCGCCGCTCAATCAAGAAACTGAGATTTCT...AGCAAGCTCTATGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
CDS-3UTR CAA 90 bp AGATTCTCTTTGCTATTTCCTGTGCTTGCTGGAATAAATGCCACAGAGAACAATAGAAATCTCAGTTTCTaGATTGAGCGGCGCTTCAGC +
Preference number: 5 (lower is better)
Translates to: RFSLLFPVLAGINATENNRNLSF*IERRFS
Trigger: GCTGAAGCGCCGCTCAATCAAGAAACTGAGATTTCT...ATTGTTCTCTGTGGCATTTATTCCAGCAAGCACAGGAAATAGCAAAGAGAATCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000113052.8
CDS TCA 90 bp AGGCAAAGGAGTCTTCCTGGCACTCATTACTTTAACAGCCACCAATaGACCAGTCTTTTCATGGATTCCCAAAAAGATTCTTCCATAAGT +
Preference number: 5 (lower is better)
Translates to: RQRSLPGTHYFNSHQ*TSLFMDSQKDSSIS
Trigger: ACTTATGGAAGAATCTTTTTGGGAATCCATGAAAAGACTGGTTCATTGGTGGCTGTTAAAGTAATGAGTGCCAGGAAGACTCCTTTGCCT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS TCA 90 bp ATGGCAGTGTTTTCATCAAAGGATTTTGGTGCCCATGCAAAGAGGTaGATTGATGACTTCACAGCAACCGCAATGTATGTTGTTTCTTCA +
Preference number: 5 (lower is better)
Translates to: MAVFSSKDFGAHAKR*IDDFTATAMYVVSS
Trigger: TGAAGAAACAACATACATTGCGGTTGCTGTGAAGTCATCAATTCACCTCTTTGCATGGGCACCAAAATCCTTTGATGAAAACACTGCCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CCA 90 bp TTTCATGGATTCCCAAAAAGATTCTTCCATAAGTACCAAGACCAATaGCTTTATCTAGTGAGAATATTCCAGTTGGATCCGGCAACTGGC +
Preference number: 5 (lower is better)
Translates to: FHGFPKRFFHKYQDQ*LYLVRIFQLDPATG
Trigger: GCCAGTTGCCGGATCCAACTGGAATATTCTCACTAGATAAAGCCATTGGTCTTGGTACTTATGGAAGAATCTTTTTGGGAATCCATGAAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp AAAACTAAACTGCCACAAAATCAAACCATTCTCTCTCCAGTACGGCTCCTAACCCCATCCAACAGACTTTaGGTATTTATTCACTCTCAC +
Preference number: 5 (lower is better)
Translates to: KTKLPQNQTILSPVRLLTPSNRL*VFIHSH
Trigger: GTGAGAGTGAATAAATACCAAAAGTCTGTTGGATGG...GGTTAGGAGCCGTACTGGAGAGAGAATGGTTTGATTTTGTGGCAGTTTAGTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp AGTTTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTTACTTCCTCAGCAGGTaGAGTTCCGTCCTAAGATCC +
Preference number: 5 (lower is better)
Translates to: SLKIIILLAHSSDLRSRAYFLSR*SSVLRS
Trigger: GGATCTTAGGACGGAACTCAACCTGCTGAGGAAGTA...AGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAAACT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp AAAACTAAACTGCCACAAAATCAAACCATTCTCTCTCCAGTACGGCTCCTAACCTTCAACTCGTCTCAGTaGCTCTTCATGCTGATTAAA +
Preference number: 5 (lower is better)
Translates to: KTKLPQNQTILSPVRLLTFNSSQ*LFMLIK
Trigger: TTTAATCAGCATGAAGAGCAACTGAGACGAGTTGAA...GGTTAGGAGCCGTACTGGAGAGAGAATGGTTTGATTTTGTGGCAGTTTAGTTTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp AAATGTTCACACTTCCAACCAGGATTCTCATTAAAACTGGCTTTCTGGACTGCCGGACTTCAGCCTGAATaGAATGAAACACTTCATCAT +
Preference number: 5 (lower is better)
Translates to: KCSHFQPGFSLKLAFWTAGLQPE*NETLHH
Trigger: ATGATGAAGTGTTTCATTCAATTCAGGCTGAAGTCC...GGCAGTCCAGAAAGCCAGTTTTAATGAGAATCCTGGTTGGAAGTGTGAACATTT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp TCTTCATTCATTTCTGGCACAAAGGTACCAGGAAATGATGTACTATCAGGAAATAGCCTACCCATTCATTaGTCAAGTACACAGGAGGTG +
Preference number: 5 (lower is better)
Translates to: SSFISGTKVPGNDVLSGNSLPIH*SSTQEV
Trigger: CACCTCCTGTGTACTTGACAAATGAATGGGTAGGCT...ATTTCCTGATAGTACATCATTTCCTGGTACCTTTGTGCCAGAAATGAATGAAGA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp AATGTTCCCCTTGATCTATGTAATTTTCTTTGCGCACACAGGTTGTTCAACCTTAAAGCTCTGGCTGCATaGTCTCCAAAGACTCCAAAA +
Preference number: 5 (lower is better)
Translates to: NVPLDLCNFLCAHRLFNLKALAA*SPKTPK
Trigger: TTTTGGAGTCTTTGGAGACAATGCAGCCAGAGCTTT...AAGGTTGAACAACCTGTGTGCGCAAAGAAAATTACATAGATCAAGGGGAACATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp AGTAACAAAAGTTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACAGTGCCCAGCAACAAATaGACTCCCCACAAAGAACCA +
Preference number: 5 (lower is better)
Translates to: SNKSYKVCAKQIVHHWSTVPSNK*TPHKEP
Trigger: TGGTTCTTTGTGGGGAGTCAATTTGTTGCTGGGCAC...TGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAACTTTTGTTACT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp TTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACATAGAGCTTGCTCAGATACAGATGAGATaGGGTGCCCAGCAACAAATT +
Preference number: 5 (lower is better)
Translates to: LQSLCKTDCTPLEYIELAQIQMR*GAQQQI
Trigger: AATTTGTTGCTGGGCACCCAATCTCATCTGTATCTG...AGCAAGCTCTATGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp AATGTTCCCCTTGATCTATGTAATTTTCTTTGCGCACACAGGTTGTTCAACCTTCAGATACAGATGAGATaGGGTGCCCAGCAACAAATT +
Preference number: 5 (lower is better)
Translates to: NVPLDLCNFLCAHRLFNLQIQMR*GAQQQI
Trigger: AATTTGTTGCTGGGCACCCAATCTCATCTGTATCTG...AAGGTTGAACAACCTGTGTGCGCAAAGAAAATTACATAGATCAAGGGGAACATT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS TCA 90 bp TTTTTGCCAGAGATGGTAATCAGCAAATTGAGCTGCTCCACGACTTaGATCTGCCGGAATGGTCTTCGCTTTATAAGTTTAACAATTTCT +
Preference number: 5 (lower is better)
Translates to: FLPEMVISKLSCSTT*ICRNGLRFISLTIS
Trigger: AGAAATTGTTAAACTTATAAAGCGAAGACCATTCCGGCAGATTCAAGTCGTGGAGCAGCTCAATTTGCTGATTACCATCTCTGGCAAAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp GGTCTTCAGTTGTGTATTTATTGTGAAAAAGAATTGGGTAGAATGTTCCCCTTGATTTGTTCTGCTCACTaGGGCACTCACTCCAAAATC +
Preference number: 5 (lower is better)
Translates to: GLQLCIYCEKELGRMFPLICSAH*GTHSKI
Trigger: GATTTTGGAGTGAGTGCCCAAGTGAGCAGAACAAAT...CAAGGGGAACATTCTACCCAATTCTTTTTCACAATAAATACACAACTGAAGACC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp TTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTAGACAGTTGTTGAAGTTCTaGGTCCTGTGGGTCTTCTTG +
Preference number: 5 (lower is better)
Translates to: LKIIILLAHSSDLRSRARQLLKF*VLWVFL
Trigger: CAAGAAGACCCACAGGACCAAGAACTTCAACAACTG...TCTAGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp AGTTTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTAGCCTACCCATTCATTaGTCAAGTACACAGGAGGTG +
Preference number: 5 (lower is better)
Translates to: SLKIIILLAHSSDLRSRASLPIH*SSTQEV
Trigger: CACCTCCTGTGTACTTGACAAATGAATGGGTAGGCT...AGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAAACT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp AATGTTCCCCTTGATCTATGTAATTTTCTTTGCGCACACAGGTTGTTCAACCTTGAAAACCCATTGTTGTaGATGATACTGGTCTACCAC +
Preference number: 5 (lower is better)
Translates to: NVPLDLCNFLCAHRLFNLENPLL*MILVYH
Trigger: GTGGTAGACCAGTATCATCAACAACAATGGGTTTTC...AAGGTTGAACAACCTGTGTGCGCAAAGAAAATTACATAGATCAAGGGGAACATT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp GATAAAATTCTGATGTTAGGATTCAATGGCATGTGTGTGGTGGATGTAAAGGTTCGAAGTCTGTTCTTTTaGCCAGAGATGGTAATCAGC +
Preference number: 5 (lower is better)
Translates to: DKILMLGFNGMCVVDVKVRSLFF*PEMVIS
Trigger: GCTGATTACCATCTCTGGCAAAAAGAACAGACTTCG...AACCTTTACATCCACCACACACATGCCATTGAATCCTAACATCAGAATTTTATC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS GCA 90 bp TTATCGATAGCTTTGCAAGCTTCCTCTTTCTTCCTCATCGCCTTCTaGCTTTTCTTACTCTTTGGATCATTATTCAGAATTTTGTTCCTC +
Preference number: 5 (lower is better)
Translates to: LSIALQASSFFLIAF*LFLLFGSLFRILFL
Trigger: GAGGAACAAAATTCTGAATAATGATCCAAAGAGTAAGAAAAGGCAGAAGGCGATGAGGAAGAAAGAGGAAGCTTGCAAAGCTATCGATAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp TCTTCATTCATTTCTGGCACAAAGGTACCAGGAAATGATGTACTATCAGGAAATCTTCCTCACCAACACTaGGAGAAAATTTCACACGAT +
Preference number: 5 (lower is better)
Translates to: SSFISGTKVPGNDVLSGNLPHQH*EKISHD
Trigger: ATCGTGTGAAATTTTCTCCAAGTGTTGGTGAGGAAG...ATTTCCTGATAGTACATCATTTCCTGGTACCTTTGTGCCAGAAATGAATGAAGA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp GGTCTTCAGTTGTGTATTTATTGTGAAAAAGAATTGGGTAGAATGTTCCCCTTGGAAAACCCATTGTTGTaGATGATACTGGTCTACCAC +
Preference number: 5 (lower is better)
Translates to: GLQLCIYCEKELGRMFPLENPLL*MILVYH
Trigger: GTGGTAGACCAGTATCATCAACAACAATGGGTTTTC...CAAGGGGAACATTCTACCCAATTCTTTTTCACAATAAATACACAACTGAAGACC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp AGTAACAAAAGTTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACACGAAGTCTGTTCTTTTaGCCAGAGATGGTAATCAGC +
Preference number: 5 (lower is better)
Translates to: SNKSYKVCAKQIVHHWSTRSLFF*PEMVIS
Trigger: GCTGATTACCATCTCTGGCAAAAAGAACAGACTTCG...TGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAACTTTTGTTACT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp TTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACATAGAGCTTGCTTGTTGTTTCTTCATGTaGAAGGACACTGAAGTGTTC +
Preference number: 5 (lower is better)
Translates to: LQSLCKTDCTPLEYIELACCFFM*KDTEVF
Trigger: GAACACTTCAGTGTCCTTCAACATGAAGAAACAACA...AGCAAGCTCTATGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp GGTCTTCAGTTGTGTATTTATTGTGAAAAAGAATTGGGTAGAATGTTCCCCTTGCCATCCAACAGACTTTaGGTATTTATTCACTCTCAC +
Preference number: 5 (lower is better)
Translates to: GLQLCIYCEKELGRMFPLPSNRL*VFIHSH
Trigger: GTGAGAGTGAATAAATACCAAAAGTCTGTTGGATGG...CAAGGGGAACATTCTACCCAATTCTTTTTCACAATAAATACACAACTGAAGACC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp AGTAACAAAAGTTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACATGGGTCTTAGTCGTTTaGCTATTGCTTTCCTTAGAC +
Preference number: 5 (lower is better)
Translates to: SNKSYKVCAKQIVHHWSTWVLVV*LLLSLD
Trigger: GTCTAAGGAAAGCAATAGCAAAACGACTAAGACCCA...TGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAACTTTTGTTACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp TTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTAGATGGGTCTTAGTCGTTTaGCTATTGCTTTCCTTAGAC +
Preference number: 5 (lower is better)
Translates to: LKIIILLAHSSDLRSRARWVLVV*LLLSLD
Trigger: GTCTAAGGAAAGCAATAGCAAAACGACTAAGACCCA...TCTAGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp AGTAACAAAAGTTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACACTTCCTCACCAACACTaGGAGAAAATTTCACACGAT +
Preference number: 5 (lower is better)
Translates to: SNKSYKVCAKQIVHHWSTLPHQH*EKISHD
Trigger: ATCGTGTGAAATTTTCTCCAAGTGTTGGTGAGGAAG...TGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAACTTTTGTTACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp AGTAACAAAAGTTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACAGAAAACCCATTGTTGTaGATGATACTGGTCTACCAC +
Preference number: 5 (lower is better)
Translates to: SNKSYKVCAKQIVHHWSTENPLL*MILVYH
Trigger: GTGGTAGACCAGTATCATCAACAACAATGGGTTTTC...TGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAACTTTTGTTACT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp CTTCTATTACAAAGTATAATGAGGAGGAAAGGACATAGTCCCAGTCTGCTTTTTCAACCGCAATGTATGTaGTTTCTTCATGTTGAAGGA +
Preference number: 5 (lower is better)
Translates to: LLLQSIMRRKGHSPSLLFQPQCM*FLHVEG
Trigger: TCCTTCAACATGAAGAAACAACATACATTGCGGTTG...AAAAAGCAGACTGGGACTATGTCCTTTCCTCCTCATTATACTTTGTAATAGAAG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp AAGCAATCAGGTAAAATGACGACATTATTATTTGGCAAGGTCACCTCAGACATACAGCTGCCTGTATTTTaGCCAATATTCGTATATAGG +
Preference number: 5 (lower is better)
Translates to: KQSGKMTTLLFGKVTSDIQLPVF*PIFVYR
Trigger: CCTATATACGAATATTGGCAAAAATACAGGCAGCTG...TATGTCTGAGGTGACCTTGCCAAATAATAATGTCGTCATTTTACCTGATTGCTT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp GGTCTTCAGTTGTGTATTTATTGTGAAAAAGAATTGGGTAGAATGTTCCCCTTGTTAAACTCTGATTTCTaGTCATCCTCACTACATCAG +
Preference number: 5 (lower is better)
Translates to: GLQLCIYCEKELGRMFPLLNSDF*SSSLHQ
Trigger: CTGATGTAGTGAGGATGACAAGAAATCAGAGTTTAA...CAAGGGGAACATTCTACCCAATTCTTTTTCACAATAAATACACAACTGAAGACC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp GATAAAATTCTGATGTTAGGATTCAATGGCATGTGTGTGGTGGATGTAAAGGTTTTAAACTCTGATTTCTaGTCATCCTCACTACATCAG +
Preference number: 5 (lower is better)
Translates to: DKILMLGFNGMCVVDVKVLNSDF*SSSLHQ
Trigger: CTGATGTAGTGAGGATGACAAGAAATCAGAGTTTAA...AACCTTTACATCCACCACACACATGCCATTGAATCCTAACATCAGAATTTTATC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp AGTTTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTTTCAACTCGTCTCAGTaGCTCTTCATGCTGATTAAA +
Preference number: 5 (lower is better)
Translates to: SLKIIILLAHSSDLRSRAFNSSQ*LFMLIK
Trigger: TTTAATCAGCATGAAGAGCAACTGAGACGAGTTGAA...AGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAAACT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp AGTAACAAAAGTTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACATTCAACTCGTCTCAGTaGCTCTTCATGCTGATTAAA +
Preference number: 5 (lower is better)
Translates to: SNKSYKVCAKQIVHHWSTFNSSQ*LFMLIK
Trigger: TTTAATCAGCATGAAGAGCAACTGAGACGAGTTGAA...TGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAACTTTTGTTACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp GTAGCAGTTACCATAGGTGAGGAAATATCACCTATTTTTGGCGTCTATAAAATAGGACTTCAGCCTGAATaGAATGAAACACTTCATCAT +
Preference number: 5 (lower is better)
Translates to: VAVTIGEEISPIFGVYKIGLQPE*NETLHH
Trigger: ATGATGAAGTGTTTCATTCAATTCAGGCTGAAGTCC...TATTTTATAGACGCCAAAAATAGGTGATATTTCCTCACCTATGGTAACTGCTAC
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp TTAAAAATTATTATCCTGCTAGCACACTCTTCAGATTTGAGAAGCAGAGCTAGATGTTGTTTCTTCATGTaGAAGGACACTGAAGTGTTC +
Preference number: 5 (lower is better)
Translates to: LKIIILLAHSSDLRSRARCCFFM*KDTEVF
Trigger: GAACACTTCAGTGTCCTTCAACATGAAGAAACAACA...TCTAGCTCTGCTTCTCAAATCTGAAGAGTGTGCTAGCAGGATAATAATTTTTAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS-3UTR CAA 90 bp AGTAACAAAAGTTACAAAGTTTGTGCAAAACAGATTGTACACCACTGGAGTACACAACCGCAATGTATGTaGTTTCTTCATGTTGAAGGA +
Preference number: 5 (lower is better)
Translates to: SNKSYKVCAKQIVHHWSTQPQCM*FLHVEG
Trigger: TCCTTCAACATGAAGAAACAACATACATTGCGGTTG...TGTACTCCAGTGGTGTACAATCTGTTTTGCACAAACTTTGTAACTTTTGTTACT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS GCA 72 bp TGGGGAGGCTCCACAGCCTCTTCCTGCACCTCAGCTTaGTCAGGCTCCCTATCCTCCTCCGGCGGCTGCTCA +
Preference number: 6 (lower is better)
Translates to: WGGSTASSCTSA*SGSLSSSGGCS
Trigger: TGAGCAGCCGCCGGAGGAGGATAGGGAGCCTGAGCAAGCTGAGGTGCAGGAAGAGGCTGTGGAGCCTCCCCA
65% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS GCA 72 bp TCGATCTCAGCTTGGGGAGGCTCCACAGCCTCTTCCTaGACCTCAGCTTGCTCAGGCTCCCTATCCTCCTCC +
Preference number: 6 (lower is better)
Translates to: SISAWGGSTASS*TSACSGSLSSS
Trigger: GGAGGAGGATAGGGAGCCTGAGCAAGCTGAGGTGCAGGAAGAGGCTGTGGAGCCTCCCCAAGCTGAGATCGA
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CAA 72 bp AGCACCTGGGCGTGCACTTGCACTACCTCAGGTTCCTaGTCCTCGATCTCAGCTTGGGGAGGCTCCACAGCC +
Preference number: 6 (lower is better)
Translates to: STWACTCTTSGS*SSISAWGGSTA
Trigger: GGCTGTGGAGCCTCCCCAAGCTGAGATCGAGGACAAGGAACCTGAGGTAGTGCAAGTGCACGCCCAGGTGCT
61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CAA 90 bp GGCGTGCACTTGCACTACCTCAGGTTCCTTGTCCTCGATCTCAGCTaGGGGAGGCTCCACAGCCTCTTCCTGCACCTCAGCTTGCTCAGG +
Preference number: 6 (lower is better)
Translates to: GVHLHYLRFLVLDLS*GRLHSLFLHLSLLR
Trigger: CCTGAGCAAGCTGAGGTGCAGGAAGAGGCTGTGGAGCCTCCCCAAGCTGAGATCGAGGACAAGGAACCTGAGGTAGTGCAAGTGCACGCC
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CAA 90 bp AAAGGCAGGAGCACCTGGGCGTGCACTTGCACTACCTCAGGTTCCTaGTCCTCGATCTCAGCTTGGGGAGGCTCCACAGCCTCTTCCTGC +
Preference number: 6 (lower is better)
Translates to: KGRSTWACTCTTSGS*SSISAWGGSTASSC
Trigger: GCAGGAAGAGGCTGTGGAGCCTCCCCAAGCTGAGATCGAGGACAAGGAACCTGAGGTAGTGCAAGTGCACGCCCAGGTGCTCCTGCCTTT
60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CAA 90 bp CCCTGGATAGTCCCTCGATCAGCGCTTGCACTGCACCAACTGCCCTaGAGGCCTCTAGATCCCAGGCCTGGGCTCGTGGTACCTCTTCAT +
Preference number: 6 (lower is better)
Translates to: PWIVPRSALALHQLP*RPLDPRPGLVVPLH
Trigger: ATGAAGAGGTACCACGAGCCCAGGCCTGGGATCTAGAGGCCTCAAGGGCAGTTGGTGCAGTGCAAGCGCTGATCGAGGGACTATCCAGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS TCA 72 bp CTTGGGGCGGTGCTTCAACCTGTACCAGTACTGGCATaGCCACCTGAGCTGCCCCACGGAGATAGGGTGCTA +
Preference number: 6 (lower is better)
Translates to: LGAVLQPVPVLA*PPELPHGDRVL
Trigger: TAGCACCCTATCTCCGTGGGGCAGCTCAGGTGGTCATGCCAGTACTGGTACAGGTTGAAGCACCGCCCCAAG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS GCA 72 bp CTCGGTCGGATGTTCATGGGCTGCTGCTGCTGCTGCTaGGGCTGGGCTTCTTCCAAAGAAGGCTCTTCCTCA +
Preference number: 6 (lower is better)
Translates to: LGRMFMGCCCCC*GWASSKEGSSS
Trigger: TGAGGAAGAGCCTTCTTTGGAAGAAGCCCAGCCGCAGCAGCAGCAGCAGCAGCCCATGAACATCCGACCGAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS GCA 72 bp AGGCAATTCCTCGGTCGGATGTTCATGGGCTGCTGCTaGTGCTGCTGCGGCTGGGCTTCTTCCAAAGAAGGC +
Preference number: 6 (lower is better)
Translates to: RQFLGRMFMGCC*CCCGWASSKEG
Trigger: GCCTTCTTTGGAAGAAGCCCAGCCGCAGCAGCAGCAGCAGCAGCCCATGAACATCCGACCGAGGAATTGCCT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CCA 72 bp GGAACCGGATTATGTATCTGCTGCTGCTCAGCAGCCTaGCCCTGCCTTGGCTGTTCAGGTGCCCTGTCTTGC +
Preference number: 6 (lower is better)
Translates to: GTGLCICCCSAA*PCLGCSGALSC
Trigger: GCAAGACAGGGCACCTGAACAGCCAAGGCAGGGCCAGGCTGCTGAGCAGCAGCAGATACATAATCCGGTTCC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CAA 90 bp CTGCTCAGCAGCCTGGCCCTGCCTTGGCTGTTCAGGTGCCCTGTCTaGCCCCTGAAATTCTTCTGGCACCTGGTCCAAATCTTTAGGCTG +
Preference number: 6 (lower is better)
Translates to: LLSSLALPWLFRCPV*PLKFFWHLVQIFRL
Trigger: CAGCCTAAAGATTTGGACCAGGTGCCAGAAGAATTTCAGGGGCAAGACAGGGCACCTGAACAGCCAAGGCAGGGCCAGGCTGCTGAGCAG
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS GCA 72 bp CGGTTCTGGGACAGTAAAGGCAGGAGCACCTGGGCGTaGACTTGCACTACCTCAGGTTCCTTGTCCTCGATC +
Preference number: 6 (lower is better)
Translates to: RFWDSKGRSTWA*TCTTSGSLSSI
Trigger: GATCGAGGACAAGGAACCTGAGGTAGTGCAAGTGCACGCCCAGGTGCTCCTGCCTTTACTGTCCCAGAACCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS GCA 72 bp CGAAGCAAGTCCCTGGATAGTCCCTCGATCAGCGCTTaGACTGCACCAACTGCCCTTGAGGCCTCTAGATCC +
Preference number: 6 (lower is better)
Translates to: RSKSLDSPSISA*TAPTALEASRS
Trigger: GGATCTAGAGGCCTCAAGGGCAGTTGGTGCAGTGCAAGCGCTGATCGAGGGACTATCCAGGGACTTGCTTCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS GCA 72 bp CAATTCCTCGGTCGGATGTTCATGGGCTGCTGCTGCTaGTGCTGCGGCTGGGCTTCTTCCAAAGAAGGCTCT +
Preference number: 6 (lower is better)
Translates to: QFLGRMFMGCCC*CCGWASSKEGS
Trigger: AGAGCCTTCTTTGGAAGAAGCCCAGCCGCAGCAGCAGCAGCAGCAGCCCATGAACATCCGACCGAGGAATTG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CCA 72 bp AAATCTTTAGGCTGTTCTGTCTCTAAGGCCTCATGCTaGGCCTGCTGTCCTTCGGCTACGGGGGCCTGGACC +
Preference number: 6 (lower is better)
Translates to: KSLGCSVSKASC*ACCPSATGAWT
Trigger: GGTCCAGGCCCCCGTAGCCGAAGGACAGCAGGCCCAGCATGAGGCCTTAGAGACAGAACAGCCTAAAGATTT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CCA 72 bp ATGTATCTGCTGCTGCTCAGCAGCCTGGCCCTGCCTTaGCTGTTCAGGTGCCCTGTCTTGCCCCTGAAATTC +
Preference number: 6 (lower is better)
Translates to: MYLLLLSSLALP*LFRCPVLPLKF
Trigger: GAATTTCAGGGGCAAGACAGGGCACCTGAACAGCCAAGGCAGGGCCAGGCTGCTGAGCAGCAGCAGATACAT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CCA 72 bp CGGATGTTCATGGGCTGCTGCTGCTGCTGCTGCGGCTaGGCTTCTTCCAAAGAAGGCTCTTCCTCACCAACA +
Preference number: 6 (lower is better)
Translates to: RMFMGCCCCCCG*ASSKEGSSSPT
Trigger: TGTTGGTGAGGAAGAGCCTTCTTTGGAAGAAGCCCAGCCGCAGCAGCAGCAGCAGCAGCCCATGAACATCCG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CAA 72 bp TTGCACTACCTCAGGTTCCTTGTCCTCGATCTCAGCTaGGGGAGGCTCCACAGCCTCTTCCTGCACCTCAGC +
Preference number: 6 (lower is better)
Translates to: LHYLRFLVLDLS*GRLHSLFLHLS
Trigger: GCTGAGGTGCAGGAAGAGGCTGTGGAGCCTCCCCAAGCTGAGATCGAGGACAAGGAACCTGAGGTAGTGCAA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS GCA 72 bp GGATTTAGGCAATTCCTCGGTCGGATGTTCATGGGCTaGTGCTGCTGCTGCTGCGGCTGGGCTTCTTCCAAA +
Preference number: 6 (lower is better)
Translates to: GFRQFLGRMFMG*CCCCCGWASSK
Trigger: TTTGGAAGAAGCCCAGCCGCAGCAGCAGCAGCAGCAGCCCATGAACATCCGACCGAGGAATTGCCTAAATCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CCA 72 bp TCTGAGGATTTAGGCAATTCCTCGGTCGGATGTTCATaGGCTGCTGCTGCTGCTGCTGCGGCTGGGCTTCTT +
Preference number: 6 (lower is better)
Translates to: SEDLGNSSVGCS*AAAAAAAAGLL
Trigger: AAGAAGCCCAGCCGCAGCAGCAGCAGCAGCAGCCCATGAACATCCGACCGAGGAATTGCCTAAATCCTCAGA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CCA 72 bp CTGCACCTGCTTCACCGGCAGCTCCATGGAAAGCTCTaGCTGCATTGTCTCCAAAGACTCCAAAAGCTCCCC +
Preference number: 6 (lower is better)
Translates to: LHLLHRQLHGKL*LHCLQRLQKLP
Trigger: GGGGAGCTTTTGGAGTCTTTGGAGACAATGCAGCCAGAGCTTTCCATGGAGCTGCCGGTGAAGCAGGTGCAG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CAA 90 bp GCTGCACCTGCTTCACCGGCAGCTCCATGGAAAGCTCTGGCTGCATaGTCTCCAAAGACTCCAAAAGCTCCCCTGTTTAGAGCACGTCCA +
Preference number: 6 (lower is better)
Translates to: AAPASPAAPWKALAA*SPKTPKAPLFRARP
Trigger: TGGACGTGCTCTAAACAGGGGAGCTTTTGGAGTCTTTGGAGACAATGCAGCCAGAGCTTTCCATGGAGCTGCCGGTGAAGCAGGTGCAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS TCA 72 bp CCCTGCCTTGGCTGTTCAGGTGCCCTGTCTTGCCCCTaGAATTCTTCTGGCACCTGGTCCAAATCTTTAGGC +
Preference number: 6 (lower is better)
Translates to: PCLGCSGALSCP*NSSGTWSKSLG
Trigger: GCCTAAAGATTTGGACCAGGTGCCAGAAGAATTTCAGGGGCAAGACAGGGCACCTGAACAGCCAAGGCAGGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS GCA 72 bp CTTGAGCATCTGGGCTGCTTTGCTTACTTGGGGCGGTaGTTCAACCTGTACCAGTACTGGCATGACCACCTG +
Preference number: 6 (lower is better)
Translates to: LEHLGCFAYLGR*FNLYQYWHDHL
Trigger: CAGGTGGTCATGCCAGTACTGGTACAGGTTGAAGCACCGCCCCAAGTAAGCAAAGCAGCCCAGATGCTCAAG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS GCA 72 bp TCCATTGCCCCTATTGGCTCCATGGTTTCCAAAGGCTaGACCTGCTTCACCGGCAGCTCCATGGAAAGCTCT +
Preference number: 6 (lower is better)
Translates to: SIAPIGSMVSKG*TCFTGSSMESS
Trigger: AGAGCTTTCCATGGAGCTGCCGGTGAAGCAGGTGCAGCCTTTGGAAACCATGGAGCCAATAGGGGCAATGGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CCA 72 bp GGGAGTGACTTGAGCATCTGGGCTGCTTTGCTTACTTaGGGCGGTGCTTCAACCTGTACCAGTACTGGCATG +
Preference number: 6 (lower is better)
Translates to: GSDLSIWAALLT*GGASTCTSTGM
Trigger: CATGCCAGTACTGGTACAGGTTGAAGCACCGCCCCAAGTAAGCAAAGCAGCCCAGATGCTCAAGTCACTCCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CAA 90 bp CTTCCATTGGCCTCCCTGTTTCTGTTACCTCTTCCATTGCCCCTATaGGCTCCATGGTTTCCAAAGGCTGCACCTGCTTCACCGGCAGCT +
Preference number: 6 (lower is better)
Translates to: LPLASLFLLPLPLPL*APWFPKAAPASPAA
Trigger: AGCTGCCGGTGAAGCAGGTGCAGCCTTTGGAAACCATGGAGCCAATAGGGGCAATGGAAGAGGTAACAGAAACAGGGAGGCCAATGGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS GCA 72 bp ACCTGCTTCACCGGCAGCTCCATGGAAAGCTCTGGCTaGATTGTCTCCAAAGACTCCAAAAGCTCCCCTGTT +
Preference number: 6 (lower is better)
Translates to: TCFTGSSMESSG*IVSKDSKSSPV
Trigger: AACAGGGGAGCTTTTGGAGTCTTTGGAGACAATGCAGCCAGAGCTTTCCATGGAGCTGCCGGTGAAGCAGGT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS TCA 72 bp CTCTGGAGAAGTAGCTTTGTTGTCCTGAGTGGGGAGTaGCTTGAGCATCTGGGCTGCTTTGCTTACTTGGGG +
Preference number: 6 (lower is better)
Translates to: LWRSSFVVLSGE*LEHLGCFAYLG
Trigger: CCCCAAGTAAGCAAAGCAGCCCAGATGCTCAAGTCACTCCCCACTCAGGACAACAAAGCTACTTCTCCAGAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CCA 72 bp TTTCTGTTACCTCTTCCATTGCCCCTATTGGCTCCATaGTTTCCAAAGGCTGCACCTGCTTCACCGGCAGCT +
Preference number: 6 (lower is better)
Translates to: FLLPLPLPLLAP*FPKAAPASPAA
Trigger: AGCTGCCGGTGAAGCAGGTGCAGCCTTTGGAAACCATGGAGCCAATAGGGGCAATGGAAGAGGTAACAGAAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CCA 72 bp CCTCCCTGTTTCTGTTACCTCTTCCATTGCCCCTATTaGCTCCATGGTTTCCAAAGGCTGCACCTGCTTCAC +
Preference number: 6 (lower is better)
Translates to: PPCFCYLFHCPY*LHGFQRLHLLH
Trigger: GTGAAGCAGGTGCAGCCTTTGGAAACCATGGAGCCAATAGGGGCAATGGAAGAGGTAACAGAAACAGGGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CAA 72 bp GCTTCACCGGCAGCTCCATGGAAAGCTCTGGCTGCATaGTCTCCAAAGACTCCAAAAGCTCCCCTGTTTAGA +
Preference number: 6 (lower is better)
Translates to: ASPAAPWKALAA*SPKTPKAPLFR
Trigger: TCTAAACAGGGGAGCTTTTGGAGTCTTTGGAGACAATGCAGCCAGAGCTTTCCATGGAGCTGCCGGTGAAGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CAA 72 bp GCCTCCCTGTTTCTGTTACCTCTTCCATTGCCCCTATaGGCTCCATGGTTTCCAAAGGCTGCACCTGCTTCA +
Preference number: 6 (lower is better)
Translates to: ASLFLLPLPLPL*APWFPKAAPAS
Trigger: TGAAGCAGGTGCAGCCTTTGGAAACCATGGAGCCAATAGGGGCAATGGAAGAGGTAACAGAAACAGGGAGGC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CAA 90 bp GCTGCGGCTGGGCTTCTTCCAAAGAAGGCTCTTCCTCACCAACACTaGGAGAAAATTTCACACGATGTGTGCGATTCCGGTTGCAAGGCA +
Preference number: 6 (lower is better)
Translates to: AAAGLLPKKALPHQH*EKISHDVCDSGCKA
Trigger: TGCCTTGCAACCGGAATCGCACACATCGTGTGAAATTTTCTCCAAGTGTTGGTGAGGAAGAGCCTTCTTTGGAAGAAGCCCAGCCGCAGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CCA 72 bp CTGTTCAGGTGCCCTGTCTTGCCCCTGAAATTCTTCTaGCACCTGGTCCAAATCTTTAGGCTGTTCTGTCTC +
Preference number: 6 (lower is better)
Translates to: LFRCPVLPLKFF*HLVQIFRLFCL
Trigger: GAGACAGAACAGCCTAAAGATTTGGACCAGGTGCCAGAAGAATTTCAGGGGCAAGACAGGGCACCTGAACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CAA 90 bp TCTTCATTCCTTCCATTGGCCTCCCTGTTTCTGTTACCTCTTCCATaGCCCCTATTGGCTCCATGGTTTCCAAAGGCTGCACCTGCTTCA +
Preference number: 6 (lower is better)
Translates to: SSFLPLASLFLLPLP*PLLAPWFPKAAPAS
Trigger: TGAAGCAGGTGCAGCCTTTGGAAACCATGGAGCCAATAGGGGCAATGGAAGAGGTAACAGAAACAGGGAGGCCAATGGAAGGAATGAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS TCA 72 bp AGATTCCCGCTCTGGGATAATTTGCTCTTGGCCCATTaGAAGCAGCACCATGATTACCACCAACGTCTCCAC +
Preference number: 6 (lower is better)
Translates to: RFPLWDNLLLAH*KQHHDYHQRLH
Trigger: GTGGAGACGTTGGTGGTAATCATGGTGCTGCTTTCAATGGGCCAAGAGCAAATTATCCCAGAGCGGGAATCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS GCA 72 bp AGGCATGGGAGCAGATCTCTCATGGACCTCATTTCCTaGAGGATTTGCAGCGTGTGGTTCTATTTGGACTTC +
Preference number: 6 (lower is better)
Translates to: RHGSRSLMDLIS*RICSVWFYLDF
Trigger: GAAGTCCAAATAGAACCACACGCTGCAAATCCTGCAGGAAATGAGGTCCATGAGAGATCTGCTCCCATGCCT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CAA 72 bp TTCTGGAACTTACGGGACCATCCACTGGATTTGACTTaGGGAGCGGCTTCCCGTAGAATAACACAAAGGGCT +
Preference number: 6 (lower is better)
Translates to: FWNLRDHPLDLT*GAASRRITQRA
Trigger: AGCCCTTTGTGTTATTCTACGGGAAGCCGCTCCCAAAGTCAAATCCAGTGGATGGTCCCGTAAGTTCCAGAA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CAA 72 bp CTGCCCCACGGAGATAGGGTGCTACCTCAACCTGCTTaGGGAAAAGCTTGGATGTATTGTCCTGAGAATGTA +
Preference number: 6 (lower is better)
Translates to: LPHGDRVLPQPA*GKAWMYCPENV
Trigger: TACATTCTCAGGACAATACATCCAAGCTTTTCCCAAAGCAGGTTGAGGTAGCACCCTATCTCCGTGGGGCAG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CAA 90 bp TCACCAACACTTGGAGAAAATTTCACACGATGTGTGCGATTCCGGTaGCAAGGCATGGGAGCAGATCTCTCATGGACCTCATTTCCTGCA +
Preference number: 6 (lower is better)
Translates to: SPTLGENFTRCVRFR*QGMGADLSWTSFPA
Trigger: TGCAGGAAATGAGGTCCATGAGAGATCTGCTCCCATGCCTTGCAACCGGAATCGCACACATCGTGTGAAATTTTCTCCAAGTGTTGGTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS TCA 72 bp GCTGCACATAGCTCCATTACCATCCAAAGTTGGTGCTaGTGGCCAGGAGGATTCAGCTTGAAAAATGCTCCA +
Preference number: 6 (lower is better)
Translates to: AAHSSITIQSWC*WPGGFSLKNAP
Trigger: TGGAGCATTTTTCAAGCTGAATCCTCCTGGCCATCAGCACCAACTTTGGATGGTAATGGAGCTATGTGCAGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS TCA 72 bp CTCGTGGTACCTCTTCATTTTGTTCCCCTACCGGAATaGGCAGCTGTCTATCCAAATGAAGAGGCAAGAGCA +
Preference number: 6 (lower is better)
Translates to: LVVPLHFVPLPE*AAVYPNEEARA
Trigger: TGCTCTTGCCTCTTCATTTGGATAGACAGCTGCTCATTCCGGTAGGGGAACAAAATGAAGAGGTACCACGAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS GCA 72 bp TTGGAGAAAATTTCACACGATGTGTGCGATTCCGGTTaGAAGGCATGGGAGCAGATCTCTCATGGACCTCAT +
Preference number: 6 (lower is better)
Translates to: LEKISHDVCDSG*KAWEQISHGPH
Trigger: ATGAGGTCCATGAGAGATCTGCTCCCATGCCTTGCAACCGGAATCGCACACATCGTGTGAAATTTTCTCCAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CCA 72 bp TTATCTAGTGAGAATATTCCAGTTGGATCCGGCAACTaGCCAAGATCTGTCACCTCCTTGTCCCTCCAACTC +
Preference number: 6 (lower is better)
Translates to: LSSENIPVGSGN*PRSVTSLSLQL
Trigger: GAGTTGGAGGGACAAGGAGGTGACAGATCTTGGCCAGTTGCCGGATCCAACTGGAATATTCTCACTAGATAA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CCA 72 bp AGATGTCCTCCCATCTACGGTGGCGCCGTCTCCTGCTaGTTTCTACATCTGAGAATTCAAAATCTTCAAGTC +
Preference number: 6 (lower is better)
Translates to: RCPPIYGGAVSC*FLHLRIQNLQV
Trigger: GACTTGAAGATTTTGAATTCTCAGATGTAGAAACCAGCAGGAGACGGCGCCACCGTAGATGGGAGGACATCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CAA 72 bp GAGCAGATCTCTCATGGACCTCATTTCCTGCAGGATTaGCAGCGTGTGGTTCTATTTGGACTTCAGCCTGAA +
Preference number: 6 (lower is better)
Translates to: EQISHGPHFLQD*QRVVLFGLQPE
Trigger: TTCAGGCTGAAGTCCAAATAGAACCACACGCTGCAAATCCTGCAGGAAATGAGGTCCATGAGAGATCTGCTC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CAA 90 bp CATAAGTACCAAGACCAATGGCTTTATCTAGTGAGAATATTCCAGTaGGATCCGGCAACTGGCCAAGATCTGTCACCTCCTTGTCCCTCC +
Preference number: 6 (lower is better)
Translates to: HKYQDQWLYLVRIFQ*DPATGQDLSPPCPS
Trigger: GGAGGGACAAGGAGGTGACAGATCTTGGCCAGTTGCCGGATCCAACTGGAATATTCTCACTAGATAAAGCCATTGGTCTTGGTACTTATG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CAA 90 bp CAATTTTCCATGAAATTCTGGAACTTACGGGACCATCCACTGGATTaGACTTTGGGAGCGGCTTCCCGTAGAATAACACAAAGGGCTTCC +
Preference number: 6 (lower is better)
Translates to: QFSMKFWNLRDHPLD*TLGAASRRITQRAS
Trigger: GGAAGCCCTTTGTGTTATTCTACGGGAAGCCGCTCCCAAAGTCAAATCCAGTGGATGGTCCCGTAAGTTCCAGAATTTCATGGAAAATTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS TCA 72 bp TCAGATACAGATGAGATTGGGTGCCCAGCAACAAATTaGCTCCCCACAAAGAACCACAGTAGACCTCAGATG +
Preference number: 6 (lower is better)
Translates to: SDTDEIGCPATN*LPTKNHSRPQM
Trigger: CATCTGAGGTCTACTGTGGTTCTTTGTGGGGAGTCAATTTGTTGCTGGGCACCCAATCTCATCTGTATCTGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CCA 72 bp AGACCACACATCACTTCTGTAATCATAGGAACACCTTaGGTCCTCATCACAATGAATCACCTCTGGGGCCAT +
Preference number: 6 (lower is better)
Translates to: RPHITSVIIGTP*VLITMNHLWGH
Trigger: ATGGCCCCAGAGGTGATTCATTGTGATGAGGACCCAAGGTGTTCCTATGATTACAGAAGTGATGTGTGGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CAA 72 bp CAAGACCAATGGCTTTATCTAGTGAGAATATTCCAGTaGGATCCGGCAACTGGCCAAGATCTGTCACCTCCT +
Preference number: 6 (lower is better)
Translates to: QDQWLYLVRIFQ*DPATGQDLSPP
Trigger: AGGAGGTGACAGATCTTGGCCAGTTGCCGGATCCAACTGGAATATTCTCACTAGATAAAGCCATTGGTCTTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CAA 90 bp AACAATTTCTGCCTTTCCACTTCGGTCCATCAGATACAGATGAGATaGGGTGCCCAGCAACAAATTGACTCCCCACAAAGAACCACAGTA +
Preference number: 6 (lower is better)
Translates to: NNFCLSTSVHQIQMR*GAQQQIDSPQRTTV
Trigger: TACTGTGGTTCTTTGTGGGGAGTCAATTTGTTGCTGGGCACCCAATCTCATCTGTATCTGATGGACCGAAGTGGAAAGGCAGAAATTGTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS GCA 72 bp ATTGGCACCATCACGAGGATCTTCATAAGCACCGTTTaGAACTTCTTCATCACCATTAGCATTGGCATCAGC +
Preference number: 6 (lower is better)
Translates to: IGTITRIFISTV*NFFITISIGIS
Trigger: GCTGATGCCAATGCTAATGGTGATGAAGAAGTTGCAAACGGTGCTTATGAAGATCCTCGTGATGGTGCCAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CAA 72 bp ATGAAATTCTGGAACTTACGGGACCATCCACTGGATTaGACTTTGGGAGCGGCTTCCCGTAGAATAACACAA +
Preference number: 6 (lower is better)
Translates to: MKFWNLRDHPLD*TLGAASRRITQ
Trigger: TTGTGTTATTCTACGGGAAGCCGCTCCCAAAGTCAAATCCAGTGGATGGTCCCGTAAGTTCCAGAATTTCAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CAA 90 bp CCTAAGATCCTCTTCTTCATCGCTGTATCTCCATCCAACAGACTTTaGGTATTTATTCACTCTCACCCGTCTTCCTATCTCAGGCAAAGG +
Preference number: 6 (lower is better)
Translates to: PKILFFIAVSPSNRL*VFIHSHPSSYLRQR
Trigger: CCTTTGCCTGAGATAGGAAGACGGGTGAGAGTGAATAAATACCAAAAGTCTGTTGGATGGAGATACAGCGATGAAGAAGAGGATCTTAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CAA 90 bp CGGTGTACCAATGAAGCTATTTCTCCGTCCATTTGTTCTGCTCACTaGGGCACTCACTCCAAAATCCACTATTTTGACTTCAGCATCATG +
Preference number: 6 (lower is better)
Translates to: RCTNEAISPSICSAH*GTHSKIHYFDFSIM
Trigger: CATGATGCTGAAGTCAAAATAGTGGATTTTGGAGTGAGTGCCCAAGTGAGCAGAACAAATGGACGGAGAAATAGCTTCATTGGTACACCG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS GCA 72 bp TTCAAACTCTGGAAATACATGTTGATCCCGTCCAAATaGTCCATTCTCTTCATTCCTTCCATTGGCCTCCCT +
Preference number: 6 (lower is better)
Translates to: FKLWKYMLIPSK*SILFIPSIGLP
Trigger: AGGGAGGCCAATGGAAGGAATGAAGAGAATGGAGCATTTGGACGGGATCAACATGTATTTCCAGAGTTTGAA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS GCA 72 bp CTCATCTGGTCTCTTAAACCGGTTCGCTGGATCAGCTaGCTGTATTTTTGCCAATATTCGTATATAGGCTTC +
Preference number: 6 (lower is better)
Translates to: LIWSLKPVRWIS*LYFCQYSYIGF
Trigger: GAAGCCTATATACGAATATTGGCAAAAATACAGGCAGCTGATCCAGCGAACCGGTTTAAGAGACCAGATGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS CCA 72 bp ATGAAGGAGCTCATCTGGTCTCTTAAACCGGTTCGCTaGATCAGCTGCCTGTATTTTTGCCAATATTCGTAT +
Preference number: 6 (lower is better)
Translates to: MKELIWSLKPVR*ISCLYFCQYSY
Trigger: ATACGAATATTGGCAAAAATACAGGCAGCTGATCCAGCGAACCGGTTTAAGAGACCAGATGAGCTCCTTCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS CAA 72 bp ACAATGTTTTTGTGGAAAGAGTACTTCCTCAGCAGGTaGAGTTCCGTCCTAAGATCCTCTTCTTCATCGCTG +
Preference number: 6 (lower is better)
Translates to: TMFLWKEYFLSR*SSVLRSSSSSL
Trigger: CAGCGATGAAGAAGAGGATCTTAGGACGGAACTCAACCTGCTGAGGAAGTACTCTTTCCACAAAAACATTGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS TCA 72 bp TCCAAAGTTGGTGCTGATGGCCAGGAGGATTCAGCTTaGAAAATGCTCCATAGAAGGTCACAATGTTTTTGT +
Preference number: 6 (lower is better)
Translates to: SKVGADGQEDSA*KMLHRRSQCFC
Trigger: ACAAAAACATTGTGACCTTCTATGGAGCATTTTTCAAGCTGAATCCTCCTGGCCATCAGCACCAACTTTGGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS TCA 72 bp GAGATGGTAATCAGCAAATTGAGCTGCTCCACGACTTaGATCTGCCGGAATGGTCTTCGCTTTATAAGTTTA +
Preference number: 6 (lower is better)
Translates to: EMVISKLSCSTT*ICRNGLRFISL
Trigger: TAAACTTATAAAGCGAAGACCATTCCGGCAGATTCAAGTCGTGGAGCAGCTCAATTTGCTGATTACCATCTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS TCA 72 bp GGCTTCATAGGACATGTAGTCTCCTTCGGAGTCTGCTaGTTGGTCAATGCATATTTAATGGCAGTGTTTTCA +
Preference number: 6 (lower is better)
Translates to: GFIGHVVSFGVC*LVNAYLMAVFS
Trigger: TGAAAACACTGCCATTAAATATGCATTGACCAATCAGCAGACTCCGAAGGAGACTACATGTCCTATGAAGCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000131829.2
CDS GCA 72 bp CCCATTGTTGTTGATGATACTGGTCTACCACTGTTTTaGTCACCATCAAAGGATGTGATCTCCAAGGCAATT +
Preference number: 6 (lower is better)
Translates to: PIVVDDTGLPLF*SPSKDVISKAI
Trigger: AATTGCCTTGGAGATCACATCCTTTGATGGTGAGCAAAACAGTGGTAGACCAGTATCATCAACAACAATGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CAA 72 bp CTCTTCTTCATCGCTGTATCTCCATCCAACAGACTTTaGGTATTTATTCACTCTCACCCGTCTTCCTATCTC +
Preference number: 6 (lower is better)
Translates to: LFFIAVSPSNRL*VFIHSHPSSYL
Trigger: GAGATAGGAAGACGGGTGAGAGTGAATAAATACCAAAAGTCTGTTGGATGGAGATACAGCGATGAAGAAGAG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CAA 72 bp TCTTCAAGTCGCCATAATGCCTTTGCTCTGAACCTCTaGGGTCTTAGTCGTTTTGCTATTGCTTTCCTTAGA +
Preference number: 6 (lower is better)
Translates to: SSSRHNAFALNL*GLSRFAIAFLR
Trigger: TCTAAGGAAAGCAATAGCAAAACGACTAAGACCCAAGAGGTTCAGAGCAAAGGCATTATGGCGACTTGAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CAA 72 bp AGAGATGGTAATCAGCAAATTGAGCTGCTCCACGACTaGAATCTGCCGGAATGGTCTTCGCTTTATAAGTTT +
Preference number: 6 (lower is better)
Translates to: RDGNQQIELLHD*NLPEWSSLYKF
Trigger: AAACTTATAAAGCGAAGACCATTCCGGCAGATTCAAGTCGTGGAGCAGCTCAATTTGCTGATTACCATCTCT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CAA 90 bp CTGCAGGATTTGCAGCGTGTGGTTCTATTTGGACTTCAGCCTGAATaGAATGAAACACTTCATCATTGTCTGATGAGTCATCTTCTCTGT +
Preference number: 6 (lower is better)
Translates to: LQDLQRVVLFGLQPE*NETLHHCLMSHLLC
Trigger: ACAGAGAAGATGACTCATCAGACAATGATGAAGTGTTTCATTCAATTCAGGCTGAAGTCCAAATAGAACCACACGCTGCAAATCCTGCAG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS GCA 72 bp AGGCATTATCCAGTCATCCCAGAAGATTTCAGAGAGTaGATTATAGCCTACCCATTCATTTGTCAAGTACAC +
Preference number: 6 (lower is better)
Translates to: RHYPVIPEDFRE*IIAYPFICQVH
Trigger: GTGTACTTGACAAATGAATGGGTAGGCTATAATGCACTCTCTGAAATCTTCTGGGATGACTGGATAATGCCT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CCA 72 bp TCTTCTTCATCGCTGTATCTCCATCCAACAGACTTTTaGTATTTATTCACTCTCACCCGTCTTCCTATCTCA +
Preference number: 6 (lower is better)
Translates to: SSSSLYLHPTDF*YLFTLTRLPIS
Trigger: TGAGATAGGAAGACGGGTGAGAGTGAATAAATACCAAAAGTCTGTTGGATGGAGATACAGCGATGAAGAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CCA 72 bp ATGAAGCTATTTCTCCGTCCATTTGTTCTGCTCACTTaGGCACTCACTCCAAAATCCACTATTTTGACTTCA +
Preference number: 6 (lower is better)
Translates to: MKLFLRPFVLLT*ALTPKSTILTS
Trigger: TGAAGTCAAAATAGTGGATTTTGGAGTGAGTGCCCAAGTGAGCAGAACAAATGGACGGAGAAATAGCTTCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CCA 72 bp CAAATTGAGCTGCTCCACGACTTGAATCTGCCGGAATaGTCTTCGCTTTATAAGTTTAACAATTTCTGCCTT +
Preference number: 6 (lower is better)
Translates to: QIELLHDLNLPE*SSLYKFNNFCL
Trigger: AAGGCAGAAATTGTTAAACTTATAAAGCGAAGACCATTCCGGCAGATTCAAGTCGTGGAGCAGCTCAATTTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CAA 90 bp CTTTTTGCCAGAGATGGTAATCAGCAAATTGAGCTGCTCCACGACTaGAATCTGCCGGAATGGTCTTCGCTTTATAAGTTTAACAATTTC +
Preference number: 6 (lower is better)
Translates to: LFARDGNQQIELLHD*NLPEWSSLYKFNNF
Trigger: GAAATTGTTAAACTTATAAAGCGAAGACCATTCCGGCAGATTCAAGTCGTGGAGCAGCTCAATTTGCTGATTACCATCTCTGGCAAAAAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CAA 90 bp CAGTGTTTTCATCAAAGGATTTTGGTGCCCATGCAAAGAGGTGAATaGATGACTTCACAGCAACCGCAATGTATGTTGTTTCTTCATGTT +
Preference number: 6 (lower is better)
Translates to: QCFHQRILVPMQRGE*MTSQQPQCMLFLHV
Trigger: AACATGAAGAAACAACATACATTGCGGTTGCTGTGAAGTCATCAATTCACCTCTTTGCATGGGCACCAAAATCCTTTGATGAAAACACTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS TCA 72 bp TTTTCATCAAAGGATTTTGGTGCCCATGCAAAGAGGTaGATTGATGACTTCACAGCAACCGCAATGTATGTT +
Preference number: 6 (lower is better)
Translates to: FSSKDFGAHAKR*IDDFTATAMYV
Trigger: AACATACATTGCGGTTGCTGTGAAGTCATCAATTCACCTCTTTGCATGGGCACCAAAATCCTTTGATGAAAA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CAA 72 bp TTGCAGCGTGTGGTTCTATTTGGACTTCAGCCTGAATaGAATGAAACACTTCATCATTGTCTGATGAGTCAT +
Preference number: 6 (lower is better)
Translates to: LQRVVLFGLQPE*NETLHHCLMSH
Trigger: ATGACTCATCAGACAATGATGAAGTGTTTCATTCAATTCAGGCTGAAGTCCAAATAGAACCACACGCTGCAA
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2
CDS CAA 72 bp CCTCAGATGAGAAATCCTTTTCATACACATGTAGTATaGGGCTGTTATATGAGATGTCACTCCCAAAATCAG +
Preference number: 6 (lower is better)
Translates to: PQMRNPFHTHVV*GCYMRCHSQNQ
Trigger: CTGATTTTGGGAGTGACATCTCATATAACAGCCCAATACTACATGTGTATGAAAAGGATTTCTCATCTGAGG
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000064937.14
ENSMUST00000113052.8
ENSMUST00000131829.2