RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NRCAM (Mus musculus)

Ensembl gene IDs: ENSMUSG00000020598

Ensembl transcript IDs: ENSMUST00000020939.16, ENSMUST00000110748.4, ENSMUST00000217907.2, ENSMUST00000218062.2, ENSMUST00000218540.2, ENSMUST00000219906.2, ENSMUST00000219939.2, ENSMUST00000220082.2, ENSMUST00000220123.2, ENSMUST00000220126.2

Found 536 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR TCA 90 bp CCAAGTCATGAAGGAGCTTTGGATCGAGAGGAACATCCAGCGCGCTaGTCATCTGGCACAGGAAGAGAATCAGGGGCACTCCGCCTGCAG +
Preference number: 1 (lower is better)
Translates to: PSHEGALDREEHPAR*SSGTGRESGALRLQ
Trigger: CTGCAGGCGGAGTGCCCCTGATTCTCTTCCTGTGCCAGATGATCAGCGCGCTGGATGTTCCTCTCGATCCAAAGCTCCTTCATGACTTGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217907.2
3UTR GCA 90 bp GCGGACAACAATGTTATTGGAGACGGCAGCTCCACGCTCGTTCCTTaGAGTGCACTGGTAGACTCCTTCATAGGTCTCTGCCTTCCCCTC +
Preference number: 1 (lower is better)
Translates to: ADNNVIGDGSSTLVP*SALVDSFIGLCLPL
Trigger: GAGGGGAAGGCAGAGACCTATGAAGGAGTCTACCAGTGCACTGCAAGGAACGAGCGTGGAGCTGCCGTCTCCAATAACATTGTTGTCCGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219939.2
3UTR GCA 90 bp GATGAGGGTCCCATTCTCTCCCGGGGAAAGCACGAGGTTTTGAGGTaGCACGATCCAGTAGGGAGCCGCTTTAACAGTGACAGAAATGGT +
Preference number: 1 (lower is better)
Translates to: DEGPILSRGKHEVLR*HDPVGSRFNSDRNG
Trigger: ACCATTTCTGTCACTGTTAAAGCGGCTCCCTACTGGATCGTGGCACCTCAAAACCTCGTGCTTTCCCCGGGAGAGAATGGGACCCTCATC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000219906.2
3UTR GCA 90 bp CAACAATGTTATTGGAGACGGCAGCTCCACGCTCGTTCCTTGCAGTaGACTGGTAGACTCCTTCATAGGTCTCTGCCTTCCCCTCACTCA +
Preference number: 1 (lower is better)
Translates to: QQCYWRRQLHARSLQ*TGRLLHRSLPSPHS
Trigger: TGAGTGAGGGGAAGGCAGAGACCTATGAAGGAGTCTACCAGTGCACTGCAAGGAACGAGCGTGGAGCTGCCGTCTCCAATAACATTGTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219939.2
3UTR TCA 90 bp GGTCTCTGCCTTCCCCTCACTCATGATGTTGATGACAAGGGTTCCTaGGCCAGGCTTCATGGTGACCAGAGGGTCCTTGTCTATGTCAAA +
Preference number: 1 (lower is better)
Translates to: GLCLPLTHDVDDKGS*ARLHGDQRVLVYVK
Trigger: TTTGACATAGACAAGGACCCTCTGGTCACCATGAAGCCTGGCTCAGGAACCCTTGTCATCAACATCATGAGTGAGGGGAAGGCAGAGACC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219939.2
3UTR CCA 90 bp TGGCATAGCAGATATAGTCCTCACGGGTGTCCTCTGGGAGGACATTaGAGAAGTAAAGGTCTCCATTTAGGCCTTGGGAAACCCGCTCAC +
Preference number: 1 (lower is better)
Translates to: WHSRYSPHGCPLGGH*RSKGLHLGLGKPAH
Trigger: GTGAGCGGGTTTCCCAAGGCCTAAATGGAGACCTTTACTTCTCCAATGTCCTCCCAGAGGACACCCGTGAGGACTATATCTGCTATGCCA
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219939.2
3UTR GCA 90 bp ACTCCGCCTGCAGATAAGTGCTTCTTCTTCGGCATTATTTTAAGCTaGATCAGCTGCACTCCTGCTGAGACCCACGCACGGAATTTCCTT +
Preference number: 1 (lower is better)
Translates to: TPPADKCFFFGIILS*ISCTPAETHARNFL
Trigger: AAGGAAATTCCGTGCGTGGGTCTCAGCAGGAGTGCAGCTGATGCAGCTTAAAATAATGCCGAAGAAGAAGCACTTATCTGCAGGCGGAGT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217907.2
3UTR GCA 90 bp ATCTGGCACAGGAAGAGAATCAGGGGCACTCCGCCTGCAGATAAGTaGTTCTTCTTCGGCATTATTTTAAGCTGCATCAGCTGCACTCCT +
Preference number: 1 (lower is better)
Translates to: IWHRKRIRGTPPADK*FFFGIILSCISCTP
Trigger: AGGAGTGCAGCTGATGCAGCTTAAAATAATGCCGAAGAAGAAGCACTTATCTGCAGGCGGAGTGCCCCTGATTCTCTTCCTGTGCCAGAT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217907.2
3UTR GCA 90 bp GCCGGAGGTAATCCAATCGGAGGCCTACATGGAAGTACTAATGACTaGCCATTCTGGAGTACTATAGGTTCAAGTCTTTCCTTGGTCCAC +
Preference number: 1 (lower is better)
Translates to: AGGNPIGGLHGSTND*PFWSTIGSSLSLVH
Trigger: GTGGACCAAGGAAAGACTTGAACCTATAGTACTCCAGAATGGGCAGTCATTAGTACTTCCATGTAGGCCTCCGATTGGATTACCTCCGGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219939.2
3UTR GCA 90 bp GCTGGCCTAATTAAGCACTGGTCAGGTTTCTCAGGTTCTGGAGTGTaGCTGTTGCAATTTGCATACACGTTGCTGAATGCTGCGGAATTT +
Preference number: 1 (lower is better)
Translates to: AGLIKHWSGFSGSGV*LLQFAYTLLNAAEF
Trigger: AAATTCCGCAGCATTCAGCAACGTGTATGCAAATTGCAACAGGCACACTCCAGAACCTGAGAAACCTGACCAGTGCTTAATTAGGCCAGC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
3UTR TCA 90 bp CTTCTTCTTCGGCATTATTTTAAGCTGCATCAGCTGCACTCCTGCTaGGACCCACGCACGGAATTTCCTTTTCTTCTCTCACGGAAGATT +
Preference number: 1 (lower is better)
Translates to: LLLRHYFKLHQLHSC*DPRTEFPFLLSRKI
Trigger: AATCTTCCGTGAGAGAAGAAAAGGAAATTCCGTGCGTGGGTCTCAGCAGGAGTGCAGCTGATGCAGCTTAAAATAATGCCGAAGAAGAAG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217907.2
3UTR TCA 90 bp GACTTAAACAAAGGAGTTCATTGCGTTGACAGGAGAAGGGGCCTCTaGGCTTTCATTTCCCTCTGCTGGCTCTTTCTCTTTCTTACCACT +
Preference number: 1 (lower is better)
Translates to: DLNKGVHCVDRRRGL*AFISLCWLFLFLTT
Trigger: AGTGGTAAGAAAGAGAAAGAGCCAGCAGAGGGAAATGAAAGCTCAGAGGCCCCTTCTCCTGTCAACGCAATGAACTCCTTTGTTTAAGTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220123.2
3UTR GCA 90 bp GCAGATAAGTGCTTCTTCTTCGGCATTATTTTAAGCTGCATCAGCTaGACTCCTGCTGAGACCCACGCACGGAATTTCCTTTTCTTCTCT +
Preference number: 1 (lower is better)
Translates to: ADKCFFFGIILSCIS*TPAETHARNFLFFS
Trigger: AGAGAAGAAAAGGAAATTCCGTGCGTGGGTCTCAGCAGGAGTGCAGCTGATGCAGCTTAAAATAATGCCGAAGAAGAAGCACTTATCTGC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217907.2
3UTR CCA 90 bp AATCCAATCGGAGGCCTACATGGAAGTACTAATGACTGCCCATTCTaGAGTACTATAGGTTCAAGTCTTTCCTTGGTCCACAAGGGTGAC +
Preference number: 1 (lower is better)
Translates to: NPIGGLHGSTNDCPF*STIGSSLSLVHKGD
Trigger: GTCACCCTTGTGGACCAAGGAAAGACTTGAACCTATAGTACTCCAGAATGGGCAGTCATTAGTACTTCCATGTAGGCCTCCGATTGGATT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219939.2
3UTR TCA 90 bp TCTCAGGTTCTGGAGTGTGCCTGTTGCAATTTGCATACACGTTGCTaGATGCTGCGGAATTTGAAAGCTTGTCTAGGCAGAGTGAATCAT +
Preference number: 1 (lower is better)
Translates to: SQVLECACCNLHTRC*MLRNLKACLGRVNH
Trigger: ATGATTCACTCTGCCTAGACAAGCTTTCAAATTCCGCAGCATTCAGCAACGTGTATGCAAATTGCAACAGGCACACTCCAGAACCTGAGA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
3UTR CCA 90 bp CACTCTGTGGAAGTCTCTGAAAGGAATTATCCATCCAAAATATTATaGCCGGAGGTAATCCAATCGGAGGCCTACATGGAAGTACTAATG +
Preference number: 1 (lower is better)
Translates to: HSVEVSERNYPSKIL*PEVIQSEAYMEVLM
Trigger: CATTAGTACTTCCATGTAGGCCTCCGATTGGATTACCTCCGGCCATAATATTTTGGATGGATAATTCCTTTCAGAGACTTCCACAGAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219939.2
3UTR TCA 90 bp GAGCAGAGACTTCACATTTGTCTTTCACTGAAGGCATTGATGACTTaGAAGGAACTTTTGTCTTTGTGCTTTGTTATGTTGAGGCAAGCC +
Preference number: 1 (lower is better)
Translates to: EQRLHICLSLKALMT*KELLSLCFVMLRQA
Trigger: GGCTTGCCTCAACATAACAAAGCACAAAGACAAAAGTTCCTTTCAAGTCATCAATGCCTTCAGTGAAAGACAAATGTGAAGTCTCTGCTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
3UTR CCA 90 bp ATCACTTTAAAACAAGCTTTACCTGTACACATCAAAGGTGTCAGGTaGCAAACCCTAATGTACTCCATTGGCAAAACACTGAGGCTTTCA +
Preference number: 1 (lower is better)
Translates to: ITLKQALPVHIKGVR*QTLMYSIGKTLRLS
Trigger: TGAAAGCCTCAGTGTTTTGCCAATGGAGTACATTAGGGTTTGCCACCTGACACCTTTGATGTGTACAGGTAAAGCTTGTTTTAAAGTGAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
3UTR GCA 90 bp GCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTTaGTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTC +
Preference number: 1 (lower is better)
Translates to: APQFILMYHLTESCS*SGLIILIYRRKHSF
Trigger: GAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGC
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
ENSMUST00000220123.2
3UTR CAA 90 bp TCTGCAGATGAGGGTCCCATTCTCTCCCGGGGAAAGCACGAGGTTTaGAGGTGCCACGATCCAGTAGGGAGCCGCTTTAACAGTGACAGA +
Preference number: 2 (lower is better)
Translates to: SADEGPILSRGKHEV*RCHDPVGSRFNSDR
Trigger: TCTGTCACTGTTAAAGCGGCTCCCTACTGGATCGTGGCACCTCAAAACCTCGTGCTTTCCCCGGGAGAGAATGGGACCCTCATCTGCAGA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219906.2
3UTR CAA 90 bp GGCGGACAACAATGTTATTGGAGACGGCAGCTCCACGCTCGTTCCTaGCAGTGCACTGGTAGACTCCTTCATAGGTCTCTGCCTTCCCCT +
Preference number: 2 (lower is better)
Translates to: GGQQCYWRRQLHARS*QCTGRLLHRSLPSP
Trigger: AGGGGAAGGCAGAGACCTATGAAGGAGTCTACCAGTGCACTGCAAGGAACGAGCGTGGAGCTGCCGTCTCCAATAACATTGTTGTCCGCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219939.2
3UTR-3UTR CCA 90 bp CTAGATGGGCGGACAACAATGTTATTGGAGACGGCAGCTCCACGCTCGTTCCTTAGTCCAGGAAAAGCTTaGGGGAGGTTTCCCTTTGGC +
Preference number: 2 (lower is better)
Translates to: LDGRTTMLLETAAPRSFLSPGKA*GRFPFG
Trigger: GCCAAAGGGAAACCTCCCCCAAGCTTTTCCTGGACT...AAGGAACGAGCGTGGAGCTGCCGTCTCCAATAACATTGTTGTCCGCCCATCTAG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000219939.2
3UTR-3UTR TCA 90 bp GGTAATCCAATCGGAGGCCTACATGGAAGTACTAATGACTGCCCATTCTGGAGTGATGACAAGGGTTCCTaGGCCAGGCTTCATGGTGAC +
Preference number: 2 (lower is better)
Translates to: GNPIGGLHGSTNDCPFWSDDKGS*ARLHGD
Trigger: GTCACCATGAAGCCTGGCTCAGGAACCCTTGTCATC...ACTCCAGAATGGGCAGTCATTAGTACTTCCATGTAGGCCTCCGATTGGATTACC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219939.2
3UTR-3UTR GCA 90 bp AGGAGCTTTGGATCGAGAGGAACATCCAGCGCGCTGATCATCTGGCACAGGAAGCCGCCTGCAGATAAGTaGTTCTTCTTCGGCATTATT +
Preference number: 2 (lower is better)
Translates to: RSFGSRGTSSALIIWHRKPPADK*FFFGII
Trigger: AATAATGCCGAAGAAGAAGCACTTATCTGCAGGCGG...CTTCCTGTGCCAGATGATCAGCGCGCTGGATGTTCCTCTCGATCCAAAGCTCCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000217907.2
3UTR-3UTR GCA 90 bp CTAGATGGGCGGACAACAATGTTATTGGAGACGGCAGCTCCACGCTCGTTCCTTTCCTTCATAGGTCTCTaGCTTCCCCTCACTCATGAT +
Preference number: 2 (lower is better)
Translates to: LDGRTTMLLETAAPRSFLSFIGL*LPLTHD
Trigger: ATCATGAGTGAGGGGAAGGCAGAGACCTATGAAGGA...AAGGAACGAGCGTGGAGCTGCCGTCTCCAATAACATTGTTGTCCGCCCATCTAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219939.2
3UTR-3UTR TCA 90 bp CCAATCGGAGGCCTACATGGAAGTACTAATGACTGCCCATTCTGGAGTACTATAAGCCAGGCTTCATGGTaGCCAGAGGGTCCTTGTCTA +
Preference number: 2 (lower is better)
Translates to: PIGGLHGSTNDCPFWSTISQASW*PEGPCL
Trigger: TAGACAAGGACCCTCTGGTCACCATGAAGCCTGGCT...TATAGTACTCCAGAATGGGCAGTCATTAGTACTTCCATGTAGGCCTCCGATTGG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219939.2
3UTR-3UTR TCA 90 bp CCATTTGTTAACCAGCTAATTCTGGGTTTCGGGTTGCCATTAGCTCTGCAGATGGTGACAGAAATGGTGTaGTGGACGGCTCCTAATGCG +
Preference number: 2 (lower is better)
Translates to: PFVNQLILGFGLPLALQMVTEMV*WTAPNA
Trigger: CGCATTAGGAGCCGTCCATCACACCATTTCTGTCAC...CATCTGCAGAGCTAATGGCAACCCGAAACCCAGAATTAGCTGGTTAACAAATGG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219906.2
3UTR-3UTR TCA 90 bp CTGCTGAGACCCACGCACGGAATTTCCTTTTCTTCTCTCACGGAAGATTGGTGTCCTCCAATGCTTCCCTaGTTTCTGAGTCCACCTTTT +
Preference number: 2 (lower is better)
Translates to: LLRPTHGISFSSLTEDWCPPMLP*FLSPPF
Trigger: AAAAGGTGGACTCAGAAATCAGGGAAGCATTGGAGG...ACACCAATCTTCCGTGAGAGAAGAAAAGGAAATTCCGTGCGTGGGTCTCAGCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217907.2
3UTR-3UTR CCA 90 bp ATGAAGGAGCTTTGGATCGAGAGGAACATCCAGCGCGCTGATCATCTGGCACAGAGTCCACCTTTTCTCTaGGTAATGTCAAGAGCTGAA +
Preference number: 2 (lower is better)
Translates to: MKELWIERNIQRADHLAQSPPFL*VMSRAE
Trigger: TTCAGCTCTTGACATTACCCAGAGAAAAGGTGGACT...CTGTGCCAGATGATCAGCGCGCTGGATGTTCCTCTCGATCCAAAGCTCCTTCAT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217907.2
3UTR CAA 90 bp GGTTTCTCAGGTTCTGGAGTGTGCCTGTTGCAATTTGCATACACGTaGCTGAATGCTGCGGAATTTGAAAGCTTGTCTAGGCAGAGTGAA +
Preference number: 2 (lower is better)
Translates to: GFSGSGVCLLQFAYT*LNAAEFESLSRQSE
Trigger: TTCACTCTGCCTAGACAAGCTTTCAAATTCCGCAGCATTCAGCAACGTGTATGCAAATTGCAACAGGCACACTCCAGAACCTGAGAAACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
3UTR-3UTR TCA 90 bp GCCAACAAAGTACCCAACCACATCGCAGTCACATACACAGGTGTGTCCTCTGTGAATGTATCATTTGACTaGGTCATGTTCTTGCTCTGG +
Preference number: 2 (lower is better)
Translates to: ANKVPNHIAVTYTGVSSVNVSFD*VMFLLW
Trigger: CCAGAGCAAGAACATGACTCAGTCAAATGATACATT...CACAGAGGACACACCTGTGTATGTGACTGCGATGTGGTTGGGTACTTTGTTGGC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220123.2
3UTR-3UTR TCA 90 bp GAGAAACCAATTTATTGGCAAATGAAACTGAGCATCCCTTCAACCATAGGTGGTCTGTACACCCGACAATaGCAGAGCTTTGGAGGCCTG +
Preference number: 2 (lower is better)
Translates to: EKPIYWQMKLSIPSTIGGLYTRQ*QSFGGL
Trigger: CAGGCCTCCAAAGCTCTGTCATTGTCGGGTGTACAG...ACCACCTATGGTTGAAGGGATGCTCAGTTTCATTTGCCAATAAATTGGTTTCTC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
3UTR CAA 90 bp CTAATTAAGCACTGGTCAGGTTTCTCAGGTTCTGGAGTGTGCCTGTaGCAATTTGCATACACGTTGCTGAATGCTGCGGAATTTGAAAGC +
Preference number: 2 (lower is better)
Translates to: LIKHWSGFSGSGVCL*QFAYTLLNAAEFES
Trigger: GCTTTCAAATTCCGCAGCATTCAGCAACGTGTATGCAAATTGCAACAGGCACACTCCAGAACCTGAGAAACCTGACCAGTGCTTAATTAG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
3UTR CAA 90 bp ACTAATGACTGCCCATTCTGGAGTACTATAGGTTCAAGTCTTTCCTaGGTCCACAAGGGTGACCTAGATGGGCGGACAACAATGTTATTG +
Preference number: 2 (lower is better)
Translates to: TNDCPFWSTIGSSLS*VHKGDLDGRTTMLL
Trigger: CAATAACATTGTTGTCCGCCCATCTAGGTCACCCTTGTGGACCAAGGAAAGACTTGAACCTATAGTACTCCAGAATGGGCAGTCATTAGT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219939.2
3UTR-3UTR TCA 90 bp AAGAGAATCAGGGGCACTCCGCCTGCAGATAAGTGCTTCTTCTTCGGCATTATTGGTAATGTCAAGAGCTaGAAGCAGCCTTGGTTAAAA +
Preference number: 2 (lower is better)
Translates to: KRIRGTPPADKCFFFGIIGNVKS*KQPWLK
Trigger: TTTTAACCAAGGCTGCTTTCAGCTCTTGACATTACC...AATAATGCCGAAGAAGAAGCACTTATCTGCAGGCGGAGTGCCCCTGATTCTCTT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217907.2
3UTR-3UTR TCA 90 bp GCCAACAAAGTACCCAACCACATCGCAGTCACATACACAGGTGTGTCCTCTGTGTTTTTCAAAGGCTTGTaGTCTTCTGCATCACTTTCA +
Preference number: 2 (lower is better)
Translates to: ANKVPNHIAVTYTGVSSVFFKGL*SSASLS
Trigger: TGAAAGTGATGCAGAAGATCACAAGCCTTTGAAAAA...CACAGAGGACACACCTGTGTATGTGACTGCGATGTGGTTGGGTACTTTGTTGGC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000220123.2
3UTR-3UTR GCA 90 bp GGTGTGTCCTCTGTGCAGCATGTCTCATGCATCGTATTGAACTGGATCCCGCACAAAACGTATGCACTTTaGACCCCAGTTCATATTAAT +
Preference number: 2 (lower is better)
Translates to: GVSSVQHVSCIVLNWIPHKTYAL*TPVHIN
Trigger: ATTAATATGAACTGGGGTGCAAAGTGCATACGTTTT...GTGCGGGATCCAGTTCAATACGATGCATGAGACATGCTGCACAGAGGACACACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220123.2
3UTR-3UTR CCA 90 bp CAAAACCATCCTGTACACCCGACAATGACAGAGCTTTGGAGGCCTGATATTTGTACAATGACAGAGCTTTaGAGGCCTGATATTTGTGTG +
Preference number: 2 (lower is better)
Translates to: QNHPVHPTMTELWRPDICTMTEL*RPDICV
Trigger: CACACAAATATCAGGCCTCCAAAGCTCTGTCATTGT...ACAAATATCAGGCCTCCAAAGCTCTGTCATTGTCGGGTGTACAGGATGGTTTTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220123.2
3UTR-3UTR TCA 90 bp GTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTAATGTATCATTTGACTaGGTCATGTTCTTGCTCTGG +
Preference number: 2 (lower is better)
Translates to: VRSMRGMTGVQENHSREINVSFD*VMFLLW
Trigger: CCAGAGCAAGAACATGACTCAGTCAAATGATACATT...AATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
ENSMUST00000220123.2
3UTR-3UTR GCA 90 bp GTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTACTGAGTCATGTTCTTaGTCTGGTCTCATAATACTC +
Preference number: 2 (lower is better)
Translates to: VRSMRGMTGVQENHSREITESCS*SGLIIL
Trigger: GAGTATTATGAGACCAGAGCAAGAACATGACTCAGT...AATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
ENSMUST00000220123.2
3UTR-3UTR GCA 90 bp TTTGGAGGCCTGATATTTGTGTGGGGAACACCACTTCAAATAAAGTTGTTCCTAGCACTGCGTGTGTCTTaGCCTGCATTTTCTGAACTA +
Preference number: 2 (lower is better)
Translates to: FGGLIFVWGTPLQIKLFLALRVS*PAFSEL
Trigger: TAGTTCAGAAAATGCAGGGCAAGACACACGCAGTGC...TAGGAACAACTTTATTTGAAGTGGTGTTCCCCACACAAATATCAGGCCTCCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220123.2
3UTR-3UTR GCA 90 bp TCTTTACTAGATTTAGCTGAAATCACCTTCAAAGAAATAGGCTGCTTCTGCTGGGCTCGTTCCTTGCAGTaGACTGGTAGACTCCTTCAT +
Preference number: 2 (lower is better)
Translates to: SLLDLAEITFKEIGCFCWARSLQ*TGRLLH
Trigger: ATGAAGGAGTCTACCAGTGCACTGCAAGGAACGAGC...CCAGCAGAAGCAGCCTATTTCTTTGAAGGTGATTTCAGCTAAATCTAGTAAAGA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219939.2
3UTR-3UTR CCA 90 bp GAGTCAGGGAATGCTAATTGTCTGAAGGCACTGCGTGTGTCTTGCCCTGCATTTGTCATGTTCTTGCTCTaGTCTCATAATACTCATATA +
Preference number: 2 (lower is better)
Translates to: ESGNANCLKALRVSCPAFVMFLL*SHNTHI
Trigger: TATATGAGTATTATGAGACCAGAGCAAGAACATGAC...AAATGCAGGGCAAGACACACGCAGTGCCTTCAGACAATTAGCATTCCCTGACTC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220123.2
3UTR-3UTR GCA 90 bp CAACAAAACCATCCTGTACACCCGACAATGACAGAGCTTTGGAGGCCTGATATTATAAAGTTGTTCCTATaGTCCCAGTTTCAGTTCGAA +
Preference number: 2 (lower is better)
Translates to: QQNHPVHPTMTELWRPDIIKLFL*SQFQFE
Trigger: TTCGAACTGAAACTGGGAGCATAGGAACAACTTTAT...AATATCAGGCCTCCAAAGCTCTGTCATTGTCGGGTGTACAGGATGGTTTTGTTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220123.2
3UTR-3UTR TCA 90 bp AGAGACATTGAAGCTCTAGAGAACACTACAGCAACACTCTTCACAATGACAACGAATGTATCATTTGACTaGGTCATGTTCTTGCTCTGG +
Preference number: 2 (lower is better)
Translates to: RDIEALENTTATLFTMTTNVSFD*VMFLLW
Trigger: CCAGAGCAAGAACATGACTCAGTCAAATGATACATT...CGTTGTCATTGTGAAGAGTGTTGCTGTAGTGTTCTCTAGAGCTTCAATGTCTCT
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220123.2
3UTR-3UTR GCA 90 bp TGTTTGGCTAGAAACCACAAAAGACAACAAAACCATCCTGTACACCCGACAATGACTGAGTCATGTTCTTaGTCTGGTCTCATAATACTC +
Preference number: 2 (lower is better)
Translates to: CLARNHKRQQNHPVHPTMTESCS*SGLIIL
Trigger: GAGTATTATGAGACCAGAGCAAGAACATGACTCAGT...CATTGTCGGGTGTACAGGATGGTTTTGTTGTCTTTTGTGGTTTCTAGCCAAACA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220123.2
3UTR-3UTR CCA 90 bp CTCTCTTTACTAGATTTAGCTGAAATCACCTTCAAAGAAATAGGCTGCTTCTGCAACCCGCTCACTCTGTaGAAGTCTCTGAAAGGAATT +
Preference number: 2 (lower is better)
Translates to: LSLLDLAEITFKEIGCFCNPLTL*KSLKGI
Trigger: AATTCCTTTCAGAGACTTCCACAGAGTGAGCGGGTT...GCAGAAGCAGCCTATTTCTTTGAAGGTGATTTCAGCTAAATCTAGTAAAGAGAG
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219939.2
3UTR CAA 90 bp CAAAAACGTATGCACTTTGCACCCCAGTTCATATTAATGTATCATTaGACTGAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATAC +
Preference number: 2 (lower is better)
Translates to: QKRMHFAPQFILMYH*TESCSCSGLIILIY
Trigger: GTATATGAGTATTATGAGACCAGAGCAAGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTGCATACGTTTTTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
ENSMUST00000220123.2
3UTR CAA 90 bp GAACTAAAATTTAAAATTTCACTTGAGAGCTTTGACTTCAATTCTTaGAGTAGGGCACAAATGCCAGCAGGTGTCACAATACGCAATGTT +
Preference number: 2 (lower is better)
Translates to: ELKFKISLESFDFNS*SRAQMPAGVTIRNV
Trigger: AACATTGCGTATTGTGACACCTGCTGGCATTTGTGCCCTACTCAAAGAATTGAAGTCAAAGCTCTCAAGTGAAATTTTAAATTTTAGTTC
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220123.2
3UTR-3UTR GCA 90 bp CTCTCAAAAAGACTAACACCAGCTAGACATAGTCACGAGTTTAACAACAATGTCAAAACGTATGCACTTTaGACCCCAGTTCATATTAAT +
Preference number: 2 (lower is better)
Translates to: LSKRLTPARHSHEFNNNVKTYAL*TPVHIN
Trigger: ATTAATATGAACTGGGGTGCAAAGTGCATACGTTTT...GACATTGTTGTTAAACTCGTGACTATGTCTAGCTGGTGTTAGTCTTTTTGAGAG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220123.2
3UTR-3UTR GCA 90 bp AACTTGACTTGTTTGGCTAGAAACCACAAAAGACAACAAAACCATCCTGTACACAAAACGTATGCACTTTaGACCCCAGTTCATATTAAT +
Preference number: 2 (lower is better)
Translates to: NLTCLARNHKRQQNHPVHKTYAL*TPVHIN
Trigger: ATTAATATGAACTGGGGTGCAAAGTGCATACGTTTT...GTGTACAGGATGGTTTTGTTGTCTTTTGTGGTTTCTAGCCAAACAAGTCAAGTT
37% GC, longest homopolymer 4 nt, total homopolymer stretches 16 nt.
Matches the following 3 transcripts:
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220123.2
3UTR-3UTR GCA 90 bp ATGTATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACAGGCTTGTGATCTTCTaGATCACTTTCAAAAGACTT +
Preference number: 2 (lower is better)
Translates to: MYHLTESCSCSGLIILIYRLVIF*ITFKRL
Trigger: AAGTCTTTTGAAAGTGATGCAGAAGATCACAAGCCT...GTATATGAGTATTATGAGACCAGAGCAAGAACATGACTCAGTCAAATGATACAT
36% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220123.2
3UTR-3UTR CCA 90 bp GAACAAAAACGTATGCACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGTCATGTTCTTGCTCTaGTCTCATAATACTCATATA +
Preference number: 2 (lower is better)
Translates to: EQKRMHFAPQFILMYHLTVMFLL*SHNTHI
Trigger: TATATGAGTATTATGAGACCAGAGCAAGAACATGAC...AGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTGCATACGTTTTTGTTC
34% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
ENSMUST00000220123.2
3UTR GCA 72 bp CCCATTCTCTCCCGGGGAAAGCACGAGGTTTTGAGGTaGCACGATCCAGTAGGGAGCCGCTTTAACAGTGAC +
Preference number: 3 (lower is better)
Translates to: PILSRGKHEVLR*HDPVGSRFNSD
Trigger: GTCACTGTTAAAGCGGCTCCCTACTGGATCGTGGCACCTCAAAACCTCGTGCTTTCCCCGGGAGAGAATGGG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000219906.2
3UTR CCA 72 bp TTTGGATCGAGAGGAACATCCAGCGCGCTGATCATCTaGCACAGGAAGAGAATCAGGGGCACTCCGCCTGCA +
Preference number: 3 (lower is better)
Translates to: FGSRGTSSALII*HRKRIRGTPPA
Trigger: TGCAGGCGGAGTGCCCCTGATTCTCTTCCTGTGCCAGATGATCAGCGCGCTGGATGTTCCTCTCGATCCAAA
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217907.2
3UTR GCA 72 bp TATTGGAGACGGCAGCTCCACGCTCGTTCCTTGCAGTaGACTGGTAGACTCCTTCATAGGTCTCTGCCTTCC +
Preference number: 3 (lower is better)
Translates to: YWRRQLHARSLQ*TGRLLHRSLPS
Trigger: GGAAGGCAGAGACCTATGAAGGAGTCTACCAGTGCACTGCAAGGAACGAGCGTGGAGCTGCCGTCTCCAATA
56% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219939.2
3UTR TCA 72 bp CTTCCCCTCACTCATGATGTTGATGACAAGGGTTCCTaGGCCAGGCTTCATGGTGACCAGAGGGTCCTTGTC +
Preference number: 3 (lower is better)
Translates to: LPLTHDVDDKGS*ARLHGDQRVLV
Trigger: GACAAGGACCCTCTGGTCACCATGAAGCCTGGCTCAGGAACCCTTGTCATCAACATCATGAGTGAGGGGAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219939.2
3UTR-3UTR CAA 90 bp GATATAGTCCTCACGGGTGTCCTCTGGGAGGACATTGGAGAAGTAAAGGTCTCCCGGACAACAATGTTATaGGAGACGGCAGCTCCACGC +
Preference number: 3 (lower is better)
Translates to: DIVLTGVLWEDIGEVKVSRTTML*ETAAPR
Trigger: GCGTGGAGCTGCCGTCTCCAATAACATTGTTGTCCG...GGAGACCTTTACTTCTCCAATGTCCTCCCAGAGGACACCCGTGAGGACTATATC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219939.2
3UTR GCA 72 bp AATGTTATTGGAGACGGCAGCTCCACGCTCGTTCCTTaGAGTGCACTGGTAGACTCCTTCATAGGTCTCTGC +
Preference number: 3 (lower is better)
Translates to: NVIGDGSSTLVP*SALVDSFIGLC
Trigger: GCAGAGACCTATGAAGGAGTCTACCAGTGCACTGCAAGGAACGAGCGTGGAGCTGCCGTCTCCAATAACATT
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219939.2
3UTR-3UTR CAA 90 bp AGACAACAAAACCATCCTGTACACCCGACAATGACAGAGCTTTGGAGGCCTGATAAGGAGCCATCCTCGTaGAATTGGCCGTTCACCCCC +
Preference number: 3 (lower is better)
Translates to: RQQNHPVHPTMTELWRPDKEPSS*NWPFTP
Trigger: GGGGGTGAACGGCCAATTCAACGAGGATGGCTCCTT...ATCAGGCCTCCAAAGCTCTGTCATTGTCGGGTGTACAGGATGGTTTTGTTGTCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220123.2
3UTR GCA 72 bp GCAGATAAGTGCTTCTTCTTCGGCATTATTTTAAGCTaGATCAGCTGCACTCCTGCTGAGACCCACGCACGG +
Preference number: 3 (lower is better)
Translates to: ADKCFFFGIILS*ISCTPAETHAR
Trigger: CCGTGCGTGGGTCTCAGCAGGAGTGCAGCTGATGCAGCTTAAAATAATGCCGAAGAAGAAGCACTTATCTGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217907.2
3UTR-3UTR CAA 90 bp TTATCCATCCAAAATATTATGGCCGGAGGTAATCCAATCGGAGGCCTACATGGAGAGTCCAGGAAAAGCTaGGGGGAGGTTTCCCTTTGG +
Preference number: 3 (lower is better)
Translates to: LSIQNIMAGGNPIGGLHGESRKS*GEVSLW
Trigger: CCAAAGGGAAACCTCCCCCAAGCTTTTCCTGGACTC...TCCATGTAGGCCTCCGATTGGATTACCTCCGGCCATAATATTTTGGATGGATAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000219939.2
3UTR TCA 72 bp GATACAGAGTACAGGAGTCAGGGAATGCTAATTGTCTaGAGGCACTGCGTGTGTCTTGCCCTGCATTTTCTG +
Preference number: 3 (lower is better)
Translates to: DTEYRSQGMLIV*RHCVCLALHFL
Trigger: CAGAAAATGCAGGGCAAGACACACGCAGTGCCTTCAGACAATTAGCATTCCCTGACTCCTGTACTCTGTATC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220123.2
3UTR TCA 72 bp CGGCATTATTTTAAGCTGCATCAGCTGCACTCCTGCTaGGACCCACGCACGGAATTTCCTTTTCTTCTCTCA +
Preference number: 3 (lower is better)
Translates to: RHYFKLHQLHSC*DPRTEFPFLLS
Trigger: TGAGAGAAGAAAAGGAAATTCCGTGCGTGGGTCTCAGCAGGAGTGCAGCTGATGCAGCTTAAAATAATGCCG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217907.2
3UTR GCA 72 bp TGCTTCTTCTTCGGCATTATTTTAAGCTGCATCAGCTaGACTCCTGCTGAGACCCACGCACGGAATTTCCTT +
Preference number: 3 (lower is better)
Translates to: CFFFGIILSCIS*TPAETHARNFL
Trigger: AAGGAAATTCCGTGCGTGGGTCTCAGCAGGAGTGCAGCTGATGCAGCTTAAAATAATGCCGAAGAAGAAGCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217907.2
3UTR GCA 72 bp AGGAAGAGAATCAGGGGCACTCCGCCTGCAGATAAGTaGTTCTTCTTCGGCATTATTTTAAGCTGCATCAGC +
Preference number: 3 (lower is better)
Translates to: RKRIRGTPPADK*FFFGIILSCIS
Trigger: GCTGATGCAGCTTAAAATAATGCCGAAGAAGAAGCACTTATCTGCAGGCGGAGTGCCCCTGATTCTCTTCCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000217907.2
3UTR CCA 72 bp CAAAACCATCCTGTACACCCGACAATGACAGAGCTTTaGAGGCCTGATATTTGTGTGGGGAACACCACTTCA +
Preference number: 3 (lower is better)
Translates to: QNHPVHPTMTEL*RPDICVGNTTS
Trigger: TGAAGTGGTGTTCCCCACACAAATATCAGGCCTCCAAAGCTCTGTCATTGTCGGGTGTACAGGATGGTTTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220123.2
3UTR CCA 72 bp GGTGTAATCTCTTTGACTGCTGGCCTAATTAAGCACTaGTCAGGTTTCTCAGGTTCTGGAGTGTGCCTGTTG +
Preference number: 3 (lower is better)
Translates to: GVISLTAGLIKH*SGFSGSGVCLL
Trigger: CAACAGGCACACTCCAGAACCTGAGAAACCTGACCAGTGCTTAATTAGGCCAGCAGTCAAAGAGATTACACC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
3UTR-3UTR CAA 90 bp CGAGGTGGTTCAGTTTCTATTGGGACTCCATTTGTTAACCAGCTAATTCTGGGTGGAAAGCACGAGGTTTaGAGGTGCCACGATCCAGTA +
Preference number: 3 (lower is better)
Translates to: RGGSVSIGTPFVNQLILGGKHEV*RCHDPV
Trigger: TACTGGATCGTGGCACCTCAAAACCTCGTGCTTTCC...ACCCAGAATTAGCTGGTTAACAAATGGAGTCCCAATAGAAACTGAACCACCTCG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219906.2
3UTR-3UTR CAA 90 bp AAGAGCGCTTCCTTTAGTGCCTTTAAACCACTCAATGGTAGGCATAGGAGATCCATTCTGGGTTTCGGGTaGCCATTAGCTCTGCAGATG +
Preference number: 3 (lower is better)
Translates to: KSASFSAFKPLNGRHRRSILGFG*PLALQM
Trigger: CATCTGCAGAGCTAATGGCAACCCGAAACCCAGAAT...GGATCTCCTATGCCTACCATTGAGTGGTTTAAAGGCACTAAAGGAAGCGCTCTT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219906.2
3UTR-3UTR CAA 90 bp GGTCAGGTTTCTCAGGTTCTGGAGTGTGCCTGTTGCAATTTGCATACACGTTGCCGAATTATCTCTGCCTaGGAAAAGTTCCTTTCCAAC +
Preference number: 3 (lower is better)
Translates to: GQVSQVLECACCNLHTRCRIISA*EKFLSN
Trigger: GTTGGAAAGGAACTTTTCCAAGGCAGAGATAATTCG...GCAACGTGTATGCAAATTGCAACAGGCACACTCCAGAACCTGAGAAACCTGACC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
3UTR TCA 72 bp CTGGAGTGTGCCTGTTGCAATTTGCATACACGTTGCTaGATGCTGCGGAATTTGAAAGCTTGTCTAGGCAGA +
Preference number: 3 (lower is better)
Translates to: LECACCNLHTRC*MLRNLKACLGR
Trigger: TCTGCCTAGACAAGCTTTCAAATTCCGCAGCATTCAGCAACGTGTATGCAAATTGCAACAGGCACACTCCAG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
3UTR TCA 72 bp AGGCCTGTTTGCAATGACCTGGTACAGTGTGTTTGCTaGTGTGAGAATCCGAGGTGGTTCAGTTTCTATTGG +
Preference number: 3 (lower is better)
Translates to: RPVCNDLVQCVC*CENPRWFSFYW
Trigger: CCAATAGAAACTGAACCACCTCGGATTCTCACATCAGCAAACACACTGTACCAGGTCATTGCAAACAGGCCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219906.2
3UTR TCA 72 bp GAAGATCCTCAGGGTCAGAAACCTCCAATGCTTCCCTaGTTTCTGAGTCCACCTTTTCTCTGGGTAATGTCA +
Preference number: 3 (lower is better)
Translates to: EDPQGQKPPMLP*FLSPPFLWVMS
Trigger: TGACATTACCCAGAGAAAAGGTGGACTCAGAAATCAGGGAAGCATTGGAGGTTTCTGACCCTGAGGATCTTC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217907.2
3UTR TCA 72 bp AGGCCTTGGGAAACCCGCTCACTCTGTGGAAGTCTCTaGAAGGAATTATCCATCCAAAATATTATGGCCGGA +
Preference number: 3 (lower is better)
Translates to: RPWETRSLCGSL*KELSIQNIMAG
Trigger: TCCGGCCATAATATTTTGGATGGATAATTCCTTTCAGAGACTTCCACAGAGTGAGCGGGTTTCCCAAGGCCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219939.2
3UTR CCA 72 bp GGAGGCCTACATGGAAGTACTAATGACTGCCCATTCTaGAGTACTATAGGTTCAAGTCTTTCCTTGGTCCAC +
Preference number: 3 (lower is better)
Translates to: GGLHGSTNDCPF*STIGSSLSLVH
Trigger: GTGGACCAAGGAAAGACTTGAACCTATAGTACTCCAGAATGGGCAGTCATTAGTACTTCCATGTAGGCCTCC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219939.2
3UTR-3UTR CAA 90 bp CAACAAAACCATCCTGTACACCCGACAATGACAGAGCTTTGGAGGCCTGATATTGCGGAATTTGAAAGCTaGTCTAGGCAGAGTGAATCA +
Preference number: 3 (lower is better)
Translates to: QQNHPVHPTMTELWRPDIAEFES*SRQSES
Trigger: TGATTCACTCTGCCTAGACAAGCTTTCAAATTCCGC...AATATCAGGCCTCCAAAGCTCTGTCATTGTCGGGTGTACAGGATGGTTTTGTTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
3UTR-3UTR CAA 90 bp CTGAGACCCACGCACGGAATTTCCTTTTCTTCTCTCACGGAAGATTGGTGTGCGAGTAGGTCTTCTTACTaGAAGAAGTGGTATTTCGTT +
Preference number: 3 (lower is better)
Translates to: LRPTHGISFSSLTEDWCASRSSY*KKWYFV
Trigger: AACGAAATACCACTTCTTCAAGTAAGAAGACCTACT...CGCACACCAATCTTCCGTGAGAGAAGAAAAGGAAATTCCGTGCGTGGGTCTCAG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000217907.2
3UTR TCA 72 bp GTGTGTCCTCTGTGCAGCATGTCTCATGCATCGTATTaGACTGGATCCCGCACAGGGAATAATGTAATCTAT +
Preference number: 3 (lower is better)
Translates to: VCPLCSMSHASY*TGSRTGNNVIY
Trigger: ATAGATTACATTATTCCCTGTGCGGGATCCAGTTCAATACGATGCATGAGACATGCTGCACAGAGGACACAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220123.2
3UTR GCA 72 bp ATTAAGCACTGGTCAGGTTTCTCAGGTTCTGGAGTGTaGCTGTTGCAATTTGCATACACGTTGCTGAATGCT +
Preference number: 3 (lower is better)
Translates to: IKHWSGFSGSGV*LLQFAYTLLNA
Trigger: AGCATTCAGCAACGTGTATGCAAATTGCAACAGGCACACTCCAGAACCTGAGAAACCTGACCAGTGCTTAAT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
3UTR-3UTR CAA 90 bp AGACAACAAAACCATCCTGTACACCCGACAATGACAGAGCTTTGGAGGCCTGATTTTGACTTCAATTCTTaGAGTAGGGCACAAATGCCA +
Preference number: 3 (lower is better)
Translates to: RQQNHPVHPTMTELWRPDFDFNS*SRAQMP
Trigger: TGGCATTTGTGCCCTACTCAAAGAATTGAAGTCAAA...ATCAGGCCTCCAAAGCTCTGTCATTGTCGGGTGTACAGGATGGTTTTGTTGTCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220123.2
3UTR GCA 72 bp AATCCAATCGGAGGCCTACATGGAAGTACTAATGACTaGCCATTCTGGAGTACTATAGGTTCAAGTCTTTCC +
Preference number: 3 (lower is better)
Translates to: NPIGGLHGSTND*PFWSTIGSSLS
Trigger: GGAAAGACTTGAACCTATAGTACTCCAGAATGGGCAGTCATTAGTACTTCCATGTAGGCCTCCGATTGGATT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219939.2
3UTR CCA 72 bp AAACAAGCTTTACCTGTACACATCAAAGGTGTCAGGTaGCAAACCCTAATGTACTCCATTGGCAAAACACTG +
Preference number: 3 (lower is better)
Translates to: KQALPVHIKGVR*QTLMYSIGKTL
Trigger: CAGTGTTTTGCCAATGGAGTACATTAGGGTTTGCCACCTGACACCTTTGATGTGTACAGGTAAAGCTTGTTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
3UTR CCA 72 bp GAAGTCTCTGAAAGGAATTATCCATCCAAAATATTATaGCCGGAGGTAATCCAATCGGAGGCCTACATGGAA +
Preference number: 3 (lower is better)
Translates to: EVSERNYPSKIL*PEVIQSEAYME
Trigger: TTCCATGTAGGCCTCCGATTGGATTACCTCCGGCCATAATATTTTGGATGGATAATTCCTTTCAGAGACTTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219939.2
3UTR-3UTR CAA 90 bp TTTCTTCTCTCACGGAAGATTGGTGTGCGGCGTTTAAATAATTTTTCATGCAGGAAGGTTTTCTTAGCATaGCTCTTCAGAAGATCCTCA +
Preference number: 3 (lower is better)
Translates to: FLLSRKIGVRRLNNFSCRKVFLA*LFRRSS
Trigger: TGAGGATCTTCTGAAGAGCAATGCTAAGAAAACCTT...CCTGCATGAAAAATTATTTAAACGCCGCACACCAATCTTCCGTGAGAGAAGAAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217907.2
3UTR TCA 72 bp TTAAAATTTCACTTGAGAGCTTTGACTTCAATTCTTTaGGTAGGGCACAAATGCCAGCAGGTGTCACAATAC +
Preference number: 3 (lower is better)
Translates to: LKFHLRALTSIL*VGHKCQQVSQY
Trigger: GTATTGTGACACCTGCTGGCATTTGTGCCCTACTCAAAGAATTGAAGTCAAAGCTCTCAAGTGAAATTTTAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220123.2
3UTR TCA 72 bp TCATGCACAGAGAAATTTAGCATCCATAGTTATAGATaGGCAGAGACTTCACATTTGTCTTTCACTGAAGGC +
Preference number: 3 (lower is better)
Translates to: SCTEKFSIHSYR*AETSHLSFTEG
Trigger: GCCTTCAGTGAAAGACAAATGTGAAGTCTCTGCTCATCTATAACTATGGATGCTAAATTTCTCTGTGCATGA
39% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
3UTR-3UTR CAA 90 bp CACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTTGCGGCTGCACTGTTTCTTaGATTTTTCTATATGCTAGT +
Preference number: 3 (lower is better)
Translates to: HFAPQFILMYHLTESCSCGCTVS*IFLYAS
Trigger: ACTAGCATATAGAAAAATCAAAGAAACAGTGCAGCC...GCAAGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000220123.2
3UTR CAA 72 bp GAGGGTCCCATTCTCTCCCGGGGAAAGCACGAGGTTTaGAGGTGCCACGATCCAGTAGGGAGCCGCTTTAAC +
Preference number: 4 (lower is better)
Translates to: EGPILSRGKHEV*RCHDPVGSRFN
Trigger: GTTAAAGCGGCTCCCTACTGGATCGTGGCACCTCAAAACCTCGTGCTTTCCCCGGGAGAGAATGGGACCCTC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000219906.2
3UTR CAA 72 bp CACAAGGGTGACCTAGATGGGCGGACAACAATGTTATaGGAGACGGCAGCTCCACGCTCGTTCCTTGCAGTG +
Preference number: 4 (lower is better)
Translates to: HKGDLDGRTTML*ETAAPRSFLAV
Trigger: CACTGCAAGGAACGAGCGTGGAGCTGCCGTCTCCAATAACATTGTTGTCCGCCCATCTAGGTCACCCTTGTG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219939.2
CDS-3UTR TCA 90 bp GGCATAGCAGATATAGTCCTCACGGGTGTCCTCTGGGAGGACATTGGAGAAGTAGAACATCCAGCGCGCTaGTCATCTGGCACAGGAAGA +
Preference number: 4 (lower is better)
Translates to: GIADIVLTGVLWEDIGEVEHPAR*SSGTGR
Trigger: TCTTCCTGTGCCAGATGATCAGCGCGCTGGATGTTC...TACTTCTCCAATGTCCTCCCAGAGGACACCCGTGAGGACTATATCTGCTATGCC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219939.2
CDS-3UTR TCA 90 bp GTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTCCTGGCAGCATGCCGTaGGTCTTGGTGCCCTGGAAG +
Preference number: 4 (lower is better)
Translates to: VRSMRGMTGVQENHSREIPGSMP*VLVPWK
Trigger: CTTCCAGGGCACCAAGACTCACGGCATGCTGCCAGG...AATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp CAACAAAACCATCCTGTACACCCGACAATGACAGAGCTTTGGAGGCCTGATATTTCTGTCCGTGCTGGCTaGGCCCTCCCCTTTCCCGTT +
Preference number: 4 (lower is better)
Translates to: QQNHPVHPTMTELWRPDISVRAG*ALPFPV
Trigger: AACGGGAAAGGGGAGGGCCCAGCCAGCACGGACAGA...AATATCAGGCCTCCAAAGCTCTGTCATTGTCGGGTGTACAGGATGGTTTTGTTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
3UTR CAA 72 bp CAATGTTATTGGAGACGGCAGCTCCACGCTCGTTCCTaGCAGTGCACTGGTAGACTCCTTCATAGGTCTCTG +
Preference number: 4 (lower is better)
Translates to: QCYWRRQLHARS*QCTGRLLHRSL
Trigger: CAGAGACCTATGAAGGAGTCTACCAGTGCACTGCAAGGAACGAGCGTGGAGCTGCCGTCTCCAATAACATTG
53% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219939.2
CDS-3UTR GCA 90 bp GGTGTGTCCTCTGTGCAGCATGTCTCATGCATCGTATTGAACTGGATCCCGCACGCTCGTTCCTTGCAGTaGACTGGTAGACTCCTTCAT +
Preference number: 4 (lower is better)
Translates to: GVSSVQHVSCIVLNWIPHARSLQ*TGRLLH
Trigger: ATGAAGGAGTCTACCAGTGCACTGCAAGGAACGAGC...GTGCGGGATCCAGTTCAATACGATGCATGAGACATGCTGCACAGAGGACACACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp GCCAACAAAGTACCCAACCACATCGCAGTCACATACACAGGTGTGTCCTCTGTGAGAATGCCCCATGACTaGAGCTGGCTCTGGTGCAAA +
Preference number: 4 (lower is better)
Translates to: ANKVPNHIAVTYTGVSSVRMPHD*SWLWCK
Trigger: TTTGCACCAGAGCCAGCTGCAGTCATGGGGCATTCT...CACAGAGGACACACCTGTGTATGTGACTGCGATGTGGTTGGGTACTTTGTTGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp GAGTCAGGGAATGCTAATTGTCTGAAGGCACTGCGTGTGTCTTGCCCTGCATTTGTCGCGATATCCACTTaGCGGCTTGCCATTGCTGGT +
Preference number: 4 (lower is better)
Translates to: ESGNANCLKALRVSCPAFVAIST*RLAIAG
Trigger: ACCAGCAATGGCAAGCCGGCAAGTGGATATCGCGAC...AAATGCAGGGCAAGACACACGCAGTGCCTTCAGACAATTAGCATTCCCTGACTC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000218062.2
CDS-3UTR CCA 90 bp TACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATTCCCCAGAAACTTCAGCCTaGTGGCGCCACAGCCCTGCA +
Preference number: 4 (lower is better)
Translates to: YPYVRSMRGMTGVQENHSPETSA*WRHSPA
Trigger: TGCAGGGCTGTGGCGCCACCAGGCTGAAGTTTCTGG...GGAATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp GGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTAGACATTGGCACAGACCAGAAACTTCAGCCTaGTGGCGCCACAGCCCTGCA +
Preference number: 4 (lower is better)
Translates to: GMTGVQENHSREIRHWHRPETSA*WRHSPA
Trigger: TGCAGGGCTGTGGCGCCACCAGGCTGAAGTTTCTGG...TCTGTGCCAATGTCTAATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp CAATTTGCATACACGTTGCTGAATGCTGCGGAATTTGAAAGCTTGTCTAGGCAGTCTGTCCGTGCTGGCTaGGCCCTCCCCTTTCCCGTT +
Preference number: 4 (lower is better)
Translates to: QFAYTLLNAAEFESLSRQSVRAG*ALPFPV
Trigger: AACGGGAAAGGGGAGGGCCCAGCCAGCACGGACAGA...CTGCCTAGACAAGCTTTCAAATTCCGCAGCATTCAGCAACGTGTATGCAAATTG
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
CDS-3UTR CCA 90 bp GGTCAGGTTTCTCAGGTTCTGGAGTGTGCCTGTTGCAATTTGCATACACGTTGCGCCATTTGGGTGGCTTaGGGGGTCCCATTCCAAAGT +
Preference number: 4 (lower is better)
Translates to: GQVSQVLECACCNLHTRCAIWVA*GVPFQS
Trigger: ACTTTGGAATGGGACCCCCCAAGCCACCCAAATGGC...GCAACGTGTATGCAAATTGCAACAGGCACACTCCAGAACCTGAGAAACCTGACC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
CDS-3UTR CCA 90 bp CCCGGAAGGATAAAAAGCCTAGGAAGGTCCGGGAGCAAAGAACAGGTTTCAGAGCCTATGAACCAGCCTTaGGTCGCGATATCCACTTGC +
Preference number: 4 (lower is better)
Translates to: PGRIKSLGRSGSKEQVSEPMNQP*VAISTC
Trigger: GCAAGTGGATATCGCGACCCAAGGCTGGTTCATAGG...CTCTGAAACCTGTTCTTTGCTCCCGGACCTTCCTAGGCTTTTTATCCTTCCGGG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp TACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATTCCGCTTCCTCTGTGATCTaGCTGCCTGGCCCCACTGAT +
Preference number: 4 (lower is better)
Translates to: YPYVRSMRGMTGVQENHSASSVI*LPGPTD
Trigger: ATCAGTGGGGCCAGGCAGTCAGATCACAGAGGAAGC...GGAATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp TCAGCTGAGGATAGTGCCAACAAAGTACCCAACCACATCGCAGTCACATACACACGCACATTAGACCTATaGACCAGCCTTGGGTCGCGA +
Preference number: 4 (lower is better)
Translates to: SAEDSANKVPNHIAVTYTRTLDL*TSLGSR
Trigger: TCGCGACCCAAGGCTGGTTCATAGGTCTAATGTGCG...TGTGTATGTGACTGCGATGTGGTTGGGTACTTTGTTGGCACTATCCTCAGCTGA
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp GGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTAGACATTGGCACAGAAGGAGCCATCCTCGTTaGATTGGCCGTTCACCCCCT +
Preference number: 4 (lower is better)
Translates to: GMTGVQENHSREIRHWHRRSHPR*IGRSPP
Trigger: AGGGGGTGAACGGCCAATTCAACGAGGATGGCTCCT...TCTGTGCCAATGTCTAATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
CDS-3UTR GCA 90 bp GGCCTCACACTGGATTACAATATTCTCCCGAGGGTCAATGATGTAGTCTTTTGGCGTCCTCCCAGGGCGTaGGTCTCCTTTTTCCAACCA +
Preference number: 4 (lower is better)
Translates to: GLTLDYNILPRVNDVVFWRPPRA*VSFFQP
Trigger: TGGTTGGAAAAAGGAGACGCACGCCCTGGGAGGACG...CCAAAAGACTACATCATTGACCCTCGGGAGAATATTGTAATCCAGTGTGAGGCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217907.2
CDS-3UTR CCA 90 bp AGATATAGTCCTCACGGGTGTCCTCTGGGAGGACATTGGAGAAGTAAAGGTCTCAGCGCGCTGATCATCTaGCACAGGAAGAGAATCAGG +
Preference number: 4 (lower is better)
Translates to: RYSPHGCPLGGHWRSKGLSALII*HRKRIR
Trigger: CCTGATTCTCTTCCTGTGCCAGATGATCAGCGCGCT...GAGACCTTTACTTCTCCAATGTCCTCCCAGAGGACACCCGTGAGGACTATATCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219939.2
CDS-3UTR CCA 90 bp GTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTGAAACTTCAGCCTGGTaGCGCCACAGCCCTGCATCA +
Preference number: 4 (lower is better)
Translates to: VRSMRGMTGVQENHSREIETSAW*RHSPAS
Trigger: TGATGCAGGGCTGTGGCGCCACCAGGCTGAAGTTTC...AATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp CAAAACCATCCTGTACACCCGACAATGACAGAGCTTTGGAGGCCTGATATTTGTGAAACTTCAGCCTGGTaGCGCCACAGCCCTGCATCA +
Preference number: 4 (lower is better)
Translates to: QNHPVHPTMTELWRPDICETSAW*RHSPAS
Trigger: TGATGCAGGGCTGTGGCGCCACCAGGCTGAAGTTTC...ACAAATATCAGGCCTCCAAAGCTCTGTCATTGTCGGGTGTACAGGATGGTTTTG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp GTACAGGAGTCAGGGAATGCTAATTGTCTGAAGGCACTGCGTGTGTCTTGCCCTGTCCTTCCACAGCCATaGGATTCTGATCTGGTTCTG +
Preference number: 4 (lower is better)
Translates to: VQESGNANCLKALRVSCPVLPQP*DSDLVL
Trigger: CAGAACCAGATCAGAATCCCATGGCTGTGGAAGGAC...AGGGCAAGACACACGCAGTGCCTTCAGACAATTAGCATTCCCTGACTCCTGTAC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp AGAGGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTAGACATTGGCACGTCCTCGGACACTCTTaGGAGGAACTGGGTCCCAGT +
Preference number: 4 (lower is better)
Translates to: RGMTGVQENHSREIRHWHVLGHS*EELGPS
Trigger: ACTGGGACCCAGTTCCTCCCAAGAGTGTCCGAGGAC...GTGCCAATGTCTAATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
3UTR CAA 72 bp TTACGAGTCCAGGAAAAGCTTGGGGGAGGTTTCCCTTaGGCCTCACACTGGATTACAATATTCTCCCGAGGG +
Preference number: 4 (lower is better)
Translates to: LRVQEKLGGGFP*ASHWITIFSRG
Trigger: CCCTCGGGAGAATATTGTAATCCAGTGTGAGGCCAAAGGGAAACCTCCCCCAAGCTTTTCCTGGACTCGTAA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000219939.2
CDS-3UTR TCA 90 bp GTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTGAACATCCAGCGCGCTaGTCATCTGGCACAGGAAGA +
Preference number: 4 (lower is better)
Translates to: VRSMRGMTGVQENHSREIEHPAR*SSGTGR
Trigger: TCTTCCTGTGCCAGATGATCAGCGCGCTGGATGTTC...AATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp GGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTAGACATTGGCACAGAAGCCAGGCTTCATGGTaGCCAGAGGGTCCTTGTCTA +
Preference number: 4 (lower is better)
Translates to: GMTGVQENHSREIRHWHRSQASW*PEGPCL
Trigger: TAGACAAGGACCCTCTGGTCACCATGAAGCCTGGCT...TCTGTGCCAATGTCTAATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp GTCCCACATACTTACTACATTCATCAACTAGCCTGCTTCTCACACAGGAGAACAGCTTCCTCTGTGATCTaGCTGCCTGGCCCCACTGAT +
Preference number: 4 (lower is better)
Translates to: VPHTYYIHQLACFSHRRTASSVI*LPGPTD
Trigger: ATCAGTGGGGCCAGGCAGTCAGATCACAGAGGAAGC...TGTTCTCCTGTGTGAGAAGCAGGCTAGTTGATGAATGTAGTAAGTATGTGGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
CDS-3UTR TCA 90 bp GTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTCGCACATTAGACCTATaGACCAGCCTTGGGTCGCGA +
Preference number: 4 (lower is better)
Translates to: VRSMRGMTGVQENHSREIRTLDL*TSLGSR
Trigger: TCGCGACCCAAGGCTGGTTCATAGGTCTAATGTGCG...AATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGAC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp TCTTTCTACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACAGGAGCCATCCTCGTTaGATTGGCCGTTCACCCCCT +
Preference number: 4 (lower is better)
Translates to: SFYPYVRSMRGMTGVQENRSHPR*IGRSPP
Trigger: AGGGGGTGAACGGCCAATTCAACGAGGATGGCTCCT...GTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTAGAAAGA
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
CDS-3UTR GCA 90 bp GCCAACAAAGTACCCAACCACATCGCAGTCACATACACAGGTGTGTCCTCTGTGCAAAGCAGGCCTGTTTaGAATGACCTGGTACAGTGT +
Preference number: 4 (lower is better)
Translates to: ANKVPNHIAVTYTGVSSVQSRPV*NDLVQC
Trigger: ACACTGTACCAGGTCATTGCAAACAGGCCTGCTTTG...CACAGAGGACACACCTGTGTATGTGACTGCGATGTGGTTGGGTACTTTGTTGGC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp GGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTAGACATTGGCACAGAAGGTCTTCTCCAGAATaGCCCATGACTGCAGCTGGC +
Preference number: 4 (lower is better)
Translates to: GMTGVQENHSREIRHWHRRSSPE*PMTAAG
Trigger: GCCAGCTGCAGTCATGGGGCATTCTGGAGAAGACCT...TCTGTGCCAATGTCTAATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp GGTGTGTCCTCTGTGCAGCATGTCTCATGCATCGTATTGAACTGGATCCCGCACAACCCGCTCACTCTGTaGAAGTCTCTGAAAGGAATT +
Preference number: 4 (lower is better)
Translates to: GVSSVQHVSCIVLNWIPHNPLTL*KSLKGI
Trigger: AATTCCTTTCAGAGACTTCCACAGAGTGAGCGGGTT...GTGCGGGATCCAGTTCAATACGATGCATGAGACATGCTGCACAGAGGACACACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp TCTTTCTACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACGAAACTTCAGCCTGGTaGCGCCACAGCCCTGCATCA +
Preference number: 4 (lower is better)
Translates to: SFYPYVRSMRGMTGVQENETSAW*RHSPAS
Trigger: TGATGCAGGGCTGTGGCGCCACCAGGCTGAAGTTTC...GTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTAGAAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp AGACAACAAAACCATCCTGTACACCCGACAATGACAGAGCTTTGGAGGCCTGATGGAGACAGCTTCAGTTaGGCTGTGGTCTGTGTTCCA +
Preference number: 4 (lower is better)
Translates to: RQQNHPVHPTMTELWRPDGDSFS*AVVCVP
Trigger: TGGAACACAGACCACAGCCCAACTGAAGCTGTCTCC...ATCAGGCCTCCAAAGCTCTGTCATTGTCGGGTGTACAGGATGGTTTTGTTGTCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp CACCAGCTAGACATAGTCACGAGTTTAACAACAATGTCCACAGAGACATTGAAGCCCCATGACTGCAGCTaGCTCTGGTGCAAACCCCAC +
Preference number: 4 (lower is better)
Translates to: HQLDIVTSLTTMSTETLKPHDCS*LWCKPH
Trigger: GTGGGGTTTGCACCAGAGCCAGCTGCAGTCATGGGG...CTTCAATGTCTCTGTGGACATTGTTGTTAAACTCGTGACTATGTCTAGCTGGTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp TTCTACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATACTCTTGGGAGGAACTaGGTCCCAGTGCACCTCTGC +
Preference number: 4 (lower is better)
Translates to: FYPYVRSMRGMTGVQENHTLGRN*VPVHLC
Trigger: GCAGAGGTGCACTGGGACCCAGTTCCTCCCAAGAGT...ATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp TCTTTCTACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACACTCTTGGGAGGAACTaGGTCCCAGTGCACCTCTGC +
Preference number: 4 (lower is better)
Translates to: SFYPYVRSMRGMTGVQENTLGRN*VPVHLC
Trigger: GCAGAGGTGCACTGGGACCCAGTTCCTCCCAAGAGT...GTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTAGAAAGA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp TACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATTCCGGCATAGTGACTGTATaGCTGCAGCCCTGGCAGCAT +
Preference number: 4 (lower is better)
Translates to: YPYVRSMRGMTGVQENHSGIVTV*LQPWQH
Trigger: ATGCTGCCAGGGCTGCAGCCATACAGTCACTATGCC...GGAATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp TTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCTACCCAGCCTCTGTCCGTGCTaGCTGGGCCCTCCCCTTTCC +
Preference number: 4 (lower is better)
Translates to: FLLWSHNTHIPQKTFFLPSLCPC*LGPPLS
Trigger: GGAAAGGGGAGGGCCCAGCCAGCACGGACAGAGGCT...GGGTAGAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
3UTR CAA 72 bp CACTGGTCAGGTTTCTCAGGTTCTGGAGTGTGCCTGTaGCAATTTGCATACACGTTGCTGAATGCTGCGGAA +
Preference number: 4 (lower is better)
Translates to: HWSGFSGSGVCL*QFAYTLLNAAE
Trigger: TTCCGCAGCATTCAGCAACGTGTATGCAAATTGCAACAGGCACACTCCAGAACCTGAGAAACCTGACCAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
CDS-3UTR TCA 90 bp TCTTTCTACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACAGCCAGGCTTCATGGTaGCCAGAGGGTCCTTGTCTA +
Preference number: 4 (lower is better)
Translates to: SFYPYVRSMRGMTGVQENSQASW*PEGPCL
Trigger: TAGACAAGGACCCTCTGGTCACCATGAAGCCTGGCT...GTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTAGAAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp GGCACAGAGCTTAAAGACTTAAACAAAGGAGTTCATTGCGTTGACAGGAGAAGGAGCCAGGCTTCATGGTaGCCAGAGGGTCCTTGTCTA +
Preference number: 4 (lower is better)
Translates to: GTELKDLNKGVHCVDRRRSQASW*PEGPCL
Trigger: TAGACAAGGACCCTCTGGTCACCATGAAGCCTGGCT...CCTTCTCCTGTCAACGCAATGAACTCCTTTGTTTAAGTCTTTAAGCTCTGTGCC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp CAGCGAGCATTAGTGGATGCAACTGTCATAAGTAACTCATGTAGCAAGTATATACCTGGCAGCATGCCGTaGGTCTTGGTGCCCTGGAAG +
Preference number: 4 (lower is better)
Translates to: QRALVDATVISNSCSKYIPGSMP*VLVPWK
Trigger: CTTCCAGGGCACCAAGACTCACGGCATGCTGCCAGG...TATATACTTGCTACATGAGTTACTTATGACAGTTGCATCCACTAATGCTCGCTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp TTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCTACCCCCTGGCAGCATGCCGTaGGTCTTGGTGCCCTGGAAG +
Preference number: 4 (lower is better)
Translates to: FLLWSHNTHIPQKTFFLPPGSMP*VLVPWK
Trigger: CTTCCAGGGCACCAAGACTCACGGCATGCTGCCAGG...GGGTAGAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp TCTTTCTACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACGGTCCCATTCCAAAGTaGGGGAGTCCAGTGTGGGAT +
Preference number: 4 (lower is better)
Translates to: SFYPYVRSMRGMTGVQENGPIPK*GSPVWD
Trigger: ATCCCACACTGGACTCCCTCACTTTGGAATGGGACC...GTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTAGAAAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp AATGCTAATTGTCTGAAGGCACTGCGTGTGTCTTGCCCTGCATTTTCTGAACTATTATCGCTTCCTCTGTaGTCTGACTGCCTGGCCCCA +
Preference number: 4 (lower is better)
Translates to: NANCLKALRVSCPAFSELLSLPL*SDCLAP
Trigger: TGGGGCCAGGCAGTCAGATCACAGAGGAAGCGATAA...TAGTTCAGAAAATGCAGGGCAAGACACACGCAGTGCCTTCAGACAATTAGCATT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp GTACAGGAGTCAGGGAATGCTAATTGTCTGAAGGCACTGCGTGTGTCTTGCCCTCTTTGTGGCTTTCATTaGCCTCTGGAGTTAGAAACG +
Preference number: 4 (lower is better)
Translates to: VQESGNANCLKALRVSCPLCGFH*PLELET
Trigger: CGTTTCTAACTCCAGAGGGCAATGAAAGCCACAAAG...AGGGCAAGACACACGCAGTGCCTTCAGACAATTAGCATTCCCTGACTCCTGTAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp TGTTTGGCTAGAAACCACAAAAGACAACAAAACCATCCTGTACACCCGACAATGGTCCCAGTGCACCTCTaGCAGCGTACTGTTCACCAC +
Preference number: 4 (lower is better)
Translates to: CLARNHKRQQNHPVHPTMVPVHL*QRTVHH
Trigger: GTGGTGAACAGTACGCTGGCAGAGGTGCACTGGGAC...CATTGTCGGGTGTACAGGATGGTTTTGTTGTCTTTTGTGGTTTCTAGCCAAACA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp GTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTTGTACTCAGTCAGGATaGCATTTGGGTGGCTTGGGG +
Preference number: 4 (lower is better)
Translates to: VRSMRGMTGVQENHSREICTQSG*HLGGLG
Trigger: CCCCAAGCCACCCAAATGGCATCCTGACTGAGTACA...AATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp TACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATTCCAGTCCAGGAAAAGCTTaGGGGAGGTTTCCCTTTGGC +
Preference number: 4 (lower is better)
Translates to: YPYVRSMRGMTGVQENHSSPGKA*GRFPFG
Trigger: GCCAAAGGGAAACCTCCCCCAAGCTTTTCCTGGACT...GGAATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp TACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATTCCTGTCCAGCGTTGTGTTaGCCGTACACGTGTAGGTTC +
Preference number: 4 (lower is better)
Translates to: YPYVRSMRGMTGVQENHSCPALC*PYTCRF
Trigger: GAACCTACACGTGTACGGCCAACACAACGCTGGACA...GGAATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp AGAGGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTAGACATTGGCACTGTCCAGCGTTGTGTTaGCCGTACACGTGTAGGTTC +
Preference number: 4 (lower is better)
Translates to: RGMTGVQENHSREIRHWHCPALC*PYTCRF
Trigger: GAACCTACACGTGTACGGCCAACACAACGCTGGACA...GTGCCAATGTCTAATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCCTCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp CTGAATGCTGCGGAATTTGAAAGCTTGTCTAGGCAGAGTGAATCATTTAGTACTCCCCATGACTGCAGCTaGCTCTGGTGCAAACCCCAC +
Preference number: 4 (lower is better)
Translates to: LNAAEFESLSRQSESFSTPHDCS*LWCKPH
Trigger: GTGGGGTTTGCACCAGAGCCAGCTGCAGTCATGGGG...AGTACTAAATGATTCACTCTGCCTAGACAAGCTTTCAAATTCCGCAGCATTCAG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
CDS-3UTR CCA 90 bp TCTTTCTACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACGCCATTTGGGTGGCTTaGGGGGTCCCATTCCAAAGT +
Preference number: 4 (lower is better)
Translates to: SFYPYVRSMRGMTGVQENAIWVA*GVPFQS
Trigger: ACTTTGGAATGGGACCCCCCAAGCCACCCAAATGGC...GTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTAGAAAGA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp TACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATTCCCCTATGAACCAGCCTTaGGTCGCGATATCCACTTGC +
Preference number: 4 (lower is better)
Translates to: YPYVRSMRGMTGVQENHSPMNQP*VAISTC
Trigger: GCAAGTGGATATCGCGACCCAAGGCTGGTTCATAGG...GGAATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp AGAGGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTAGACATTGGCACCAGGCCTGTTTGCAATaGCCTGGTACAGTGTGTTTG +
Preference number: 4 (lower is better)
Translates to: RGMTGVQENHSREIRHWHQACLQ*PGTVCL
Trigger: CAAACACACTGTACCAGGTCATTGCAAACAGGCCTG...GTGCCAATGTCTAATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp AGAGGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTAGACATTGGCACACTGCCTGGCCCCACTaGTGTCTGTGCATAGAAATA +
Preference number: 4 (lower is better)
Translates to: RGMTGVQENHSREIRHWHTAWPH*CLCIEI
Trigger: TATTTCTATGCACAGACATCAGTGGGGCCAGGCAGT...GTGCCAATGTCTAATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCCTCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp CCCGGAAGGATAAAAAGCCTAGGAAGGTCCGGGAGCAAAGAACAGGTTTCAGAGATTTCAGGGTCTGCATaGGCATCCTCCTTTTCTTTA +
Preference number: 4 (lower is better)
Translates to: PGRIKSLGRSGSKEQVSEISGSA*ASSFSL
Trigger: TAAAGAAAAGGAGGATGCTCATGCAGACCCTGAAAT...CTCTGAAACCTGTTCTTTGCTCCCGGACCTTCCTAGGCTTTTTATCCTTCCGGG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp GTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTGCTCGTTCCTTGCAGTaGACTGGTAGACTCCTTCAT +
Preference number: 4 (lower is better)
Translates to: VRSMRGMTGVQENHSREIARSLQ*TGRLLH
Trigger: ATGAAGGAGTCTACCAGTGCACTGCAAGGAACGAGC...AATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp TCAGCTGAGGATAGTGCCAACAAAGTACCCAACCACATCGCAGTCACATACACACGCCATCTATTTTTCTaGTGGGGTCATCGAGAGCAA +
Preference number: 4 (lower is better)
Translates to: SAEDSANKVPNHIAVTYTRHLFF*WGHREQ
Trigger: TTGCTCTCGATGACCCCAGCAGAAAAATAGATGGCG...TGTGTATGTGACTGCGATGTGGTTGGGTACTTTGTTGGCACTATCCTCAGCTGA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp CAATTTGCATACACGTTGCTGAATGCTGCGGAATTTGAAAGCTTGTCTAGGCAGTGTACTCAGTCAGGATaGCATTTGGGTGGCTTGGGG +
Preference number: 4 (lower is better)
Translates to: QFAYTLLNAAEFESLSRQCTQSG*HLGGLG
Trigger: CCCCAAGCCACCCAAATGGCATCCTGACTGAGTACA...CTGCCTAGACAAGCTTTCAAATTCCGCAGCATTCAGCAACGTGTATGCAAATTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
CDS-3UTR GCA 90 bp TACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATTCCTTCTTTGCCTTTGCCTaGACCTACATCAGGTGGAGG +
Preference number: 4 (lower is better)
Translates to: YPYVRSMRGMTGVQENHSFFAFA*TYIRWR
Trigger: CCTCCACCTGATGTAGGTGCAGGCAAAGGCAAAGAA...GGAATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020939.16
CDS-3UTR CCA 90 bp GCCAACAAAGTACCCAACCACATCGCAGTCACATACACAGGTGTGTCCTCTGTGCCATCCAAAATATTATaGCCGGAGGTAATCCAATCG +
Preference number: 4 (lower is better)
Translates to: ANKVPNHIAVTYTGVSSVPSKIL*PEVIQS
Trigger: CGATTGGATTACCTCCGGCCATAATATTTTGGATGG...CACAGAGGACACACCTGTGTATGTGACTGCGATGTGGTTGGGTACTTTGTTGGC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp CAGCGAGCATTAGTGGATGCAACTGTCATAAGTAACTCATGTAGCAAGTATATACCAGAAACTTCAGCCTaGTGGCGCCACAGCCCTGCA +
Preference number: 4 (lower is better)
Translates to: QRALVDATVISNSCSKYIPETSA*WRHSPA
Trigger: TGCAGGGCTGTGGCGCCACCAGGCTGAAGTTTCTGG...TATATACTTGCTACATGAGTTACTTATGACAGTTGCATCCACTAATGCTCGCTG
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp TACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATTCCGTCCTTCCACAGCCATaGGATTCTGATCTGGTTCTG +
Preference number: 4 (lower is better)
Translates to: YPYVRSMRGMTGVQENHSVLPQP*DSDLVL
Trigger: CAGAACCAGATCAGAATCCCATGGCTGTGGAAGGAC...GGAATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp CACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTTGCCCCCATGACTGCAGCTaGCTCTGGTGCAAACCCCAC +
Preference number: 4 (lower is better)
Translates to: HFAPQFILMYHLTESCSCPHDCS*LWCKPH
Trigger: GTGGGGTTTGCACCAGAGCCAGCTGCAGTCATGGGG...GCAAGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp CAAAACCATCCTGTACACCCGACAATGACAGAGCTTTGGAGGCCTGATATTTGTTCCAGGAGCCACCATTaGAAGGTCTTCTCCAGAATG +
Preference number: 4 (lower is better)
Translates to: QNHPVHPTMTELWRPDICSRSHH*KVFSRM
Trigger: CATTCTGGAGAAGACCTTCCAATGGTGGCTCCTGGA...ACAAATATCAGGCCTCCAAAGCTCTGTCATTGTCGGGTGTACAGGATGGTTTTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp CCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCGTCCTCGGACACTCTTaGGAGGAACTGGGTCCCAGT +
Preference number: 4 (lower is better)
Translates to: PQFILMYHLTESCSCSGLVLGHS*EELGPS
Trigger: ACTGGGACCCAGTTCCTCCCAAGAGTGTCCGAGGAC...GAGACCAGAGCAAGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp GAAGCTCTAGAGAACACTACAGCAACACTCTTCACAATGACAACGGAATTCATAGTCCTCGGACACTCTTaGGAGGAACTGGGTCCCAGT +
Preference number: 4 (lower is better)
Translates to: EALENTTATLFTMTTEFIVLGHS*EELGPS
Trigger: ACTGGGACCCAGTTCCTCCCAAGAGTGTCCGAGGAC...TATGAATTCCGTTGTCATTGTGAAGAGTGTTGCTGTAGTGTTCTCTAGAGCTTC
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp ATGTATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACAGCCTCTGTCCGTGCTaGCTGGGCCCTCCCCTTTCC +
Preference number: 4 (lower is better)
Translates to: MYHLTESCSCSGLIILIYSLCPC*LGPPLS
Trigger: GGAAAGGGGAGGGCCCAGCCAGCACGGACAGAGGCT...GTATATGAGTATTATGAGACCAGAGCAAGAACATGACTCAGTCAAATGATACAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp GAACAAAAACGTATGCACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTAGCCTCTGTCCGTGCTaGCTGGGCCCTCCCCTTTCC +
Preference number: 4 (lower is better)
Translates to: EQKRMHFAPQFILMYHLTSLCPC*LGPPLS
Trigger: GGAAAGGGGAGGGCCCAGCCAGCACGGACAGAGGCT...AGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTGCATACGTTTTTGTTC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp TACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATTCCTGCACCTACATCAGGTaGAGGAATACCAGCTTCGTC +
Preference number: 4 (lower is better)
Translates to: YPYVRSMRGMTGVQENHSCTYIR*RNTSFV
Trigger: GACGAAGCTGGTATTCCTCCACCTGATGTAGGTGCA...GGAATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp TTTGGAGGCCTGATATTTGTGTGGGGAACACCACTTCAAATAAAGTTGTTCCTAGAACATCCAGCGCGCTaGTCATCTGGCACAGGAAGA +
Preference number: 4 (lower is better)
Translates to: FGGLIFVWGTPLQIKLFLEHPAR*SSGTGR
Trigger: TCTTCCTGTGCCAGATGATCAGCGCGCTGGATGTTC...TAGGAACAACTTTATTTGAAGTGGTGTTCCCCACACAAATATCAGGCCTCCAAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp CCCAGTTTCAGTTCGAATTATCTCTGCCTTGGAAAAGTTCCTTTCCAACAACAGGTGACAGAAATGGTGTaGTGGACGGCTCCTAATGCG +
Preference number: 4 (lower is better)
Translates to: PSFSSNYLCLGKVPFQQQVTEMV*WTAPNA
Trigger: CGCATTAGGAGCCGTCCATCACACCATTTCTGTCAC...CTGTTGTTGGAAAGGAACTTTTCCAAGGCAGAGATAATTCGAACTGAAACTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp CCCAGTTTCAGTTCGAATTATCTCTGCCTTGGAAAAGTTCCTTTCCAACAACAGCCAGGCCCATTCGATTaGAAACCATTCAGGGGCTTC +
Preference number: 4 (lower is better)
Translates to: PSFSSNYLCLGKVPFQQQPGPFD*KPFRGF
Trigger: GAAGCCCCTGAATGGTTTTCAATCGAATGGGCCTGG...CTGTTGTTGGAAAGGAACTTTTCCAAGGCAGAGATAATTCGAACTGAAACTGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp TATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCGCTTCCTCTGTGATCTaGCTGCCTGGCCCCACTGAT +
Preference number: 4 (lower is better)
Translates to: YHLTESCSCSGLIILIYRASSVI*LPGPTD
Trigger: ATCAGTGGGGCCAGGCAGTCAGATCACAGAGGAAGC...GCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGACTCAGTCAAATGATA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp TCAGCTGAGGATAGTGCCAACAAAGTACCCAACCACATCGCAGTCACATACACACCGCCTGCAGATAAGTaGTTCTTCTTCGGCATTATT +
Preference number: 4 (lower is better)
Translates to: SAEDSANKVPNHIAVTYTPPADK*FFFGII
Trigger: AATAATGCCGAAGAAGAAGCACTTATCTGCAGGCGG...TGTGTATGTGACTGCGATGTGGTTGGGTACTTTGTTGGCACTATCCTCAGCTGA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp TTCTACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATGCTCGTTCCTTGCAGTaGACTGGTAGACTCCTTCAT +
Preference number: 4 (lower is better)
Translates to: FYPYVRSMRGMTGVQENHARSLQ*TGRLLH
Trigger: ATGAAGGAGTCTACCAGTGCACTGCAAGGAACGAGC...ATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTAGAA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp GGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTAGACATTGGCACAGACAAAGCAGGCCTGTTTaGAATGACCTGGTACAGTGT +
Preference number: 4 (lower is better)
Translates to: GMTGVQENHSREIRHWHRQSRPV*NDLVQC
Trigger: ACACTGTACCAGGTCATTGCAAACAGGCCTGCTTTG...TCTGTGCCAATGTCTAATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp TGTTTGGCTAGAAACCACAAAAGACAACAAAACCATCCTGTACACCCGACAATGAGAATGCCCCATGACTaGAGCTGGCTCTGGTGCAAA +
Preference number: 4 (lower is better)
Translates to: CLARNHKRQQNHPVHPTMRMPHD*SWLWCK
Trigger: TTTGCACCAGAGCCAGCTGCAGTCATGGGGCATTCT...CATTGTCGGGTGTACAGGATGGTTTTGTTGTCTTTTGTGGTTTCTAGCCAAACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp TCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCTACCCAGTCCCAGTGCACCTCTaGCAGCGTACTGTTCACCAC +
Preference number: 4 (lower is better)
Translates to: SCSGLIILIYRRKHSFYPVPVHL*QRTVHH
Trigger: GTGGTGAACAGTACGCTGGCAGAGGTGCACTGGGAC...TGGGTAGAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp CAAAACCATCCTGTACACCCGACAATGACAGAGCTTTGGAGGCCTGATATTTGTCTGGATTTCAGGGTCTaGATGAGCATCCTCCTTTTC +
Preference number: 4 (lower is better)
Translates to: QNHPVHPTMTELWRPDICLDFRV*MSILLF
Trigger: GAAAAGGAGGATGCTCATGCAGACCCTGAAATCCAG...ACAAATATCAGGCCTCCAAAGCTCTGTCATTGTCGGGTGTACAGGATGGTTTTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp AGAGGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTAGACATTGGCACCTGGATTTCAGGGTCTaGATGAGCATCCTCCTTTTC +
Preference number: 4 (lower is better)
Translates to: RGMTGVQENHSREIRHWHLDFRV*MSILLF
Trigger: GAAAAGGAGGATGCTCATGCAGACCCTGAAATCCAG...GTGCCAATGTCTAATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp AGAGACATTGAAGCTCTAGAGAACACTACAGCAACACTCTTCACAATGACAACGAGTCCAGGAAAAGCTTaGGGGAGGTTTCCCTTTGGC +
Preference number: 4 (lower is better)
Translates to: RDIEALENTTATLFTMTTSPGKA*GRFPFG
Trigger: GCCAAAGGGAAACCTCCCCCAAGCTTTTCCTGGACT...CGTTGTCATTGTGAAGAGTGTTGCTGTAGTGTTCTCTAGAGCTTCAATGTCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp AGACAACAAAACCATCCTGTACACCCGACAATGACAGAGCTTTGGAGGCCTGATAACCCGCTCACTCTGTaGAAGTCTCTGAAAGGAATT +
Preference number: 4 (lower is better)
Translates to: RQQNHPVHPTMTELWRPDNPLTL*KSLKGI
Trigger: AATTCCTTTCAGAGACTTCCACAGAGTGAGCGGGTT...ATCAGGCCTCCAAAGCTCTGTCATTGTCGGGTGTACAGGATGGTTTTGTTGTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp TCTTTCTACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACTCCAGGAGCCACCATTaGAAGGTCTTCTCCAGAATG +
Preference number: 4 (lower is better)
Translates to: SFYPYVRSMRGMTGVQENSRSHH*KVFSRM
Trigger: CATTCTGGAGAAGACCTTCCAATGGTGGCTCCTGGA...GTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTAGAAAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp GTCCCACATACTTACTACATTCATCAACTAGCCTGCTTCTCACACAGGAGAACATCCAGGAGCCACCATTaGAAGGTCTTCTCCAGAATG +
Preference number: 4 (lower is better)
Translates to: VPHTYYIHQLACFSHRRTSRSHH*KVFSRM
Trigger: CATTCTGGAGAAGACCTTCCAATGGTGGCTCCTGGA...TGTTCTCCTGTGTGAGAAGCAGGCTAGTTGATGAATGTAGTAAGTATGTGGGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
CDS-3UTR CCA 90 bp TCAAAAAGACTAACACCAGCTAGACATAGTCACGAGTTTAACAACAATGTCCACACTCTTGGGAGGAACTaGGTCCCAGTGCACCTCTGC +
Preference number: 4 (lower is better)
Translates to: SKRLTPARHSHEFNNNVHTLGRN*VPVHLC
Trigger: GCAGAGGTGCACTGGGACCCAGTTCCTCCCAAGAGT...GTGGACATTGTTGTTAAACTCGTGACTATGTCTAGCTGGTGTTAGTCTTTTTGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp ATGTATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACTCTGTCCGTGCTGGCTaGGCCCTCCCCTTTCCCGTT +
Preference number: 4 (lower is better)
Translates to: MYHLTESCSCSGLIILIYSVRAG*ALPFPV
Trigger: AACGGGAAAGGGGAGGGCCCAGCCAGCACGGACAGA...GTATATGAGTATTATGAGACCAGAGCAAGAACATGACTCAGTCAAATGATACAT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
3UTR CAA 72 bp GGTTCTGGAGTGTGCCTGTTGCAATTTGCATACACGTaGCTGAATGCTGCGGAATTTGAAAGCTTGTCTAGG +
Preference number: 4 (lower is better)
Translates to: GSGVCLLQFAYT*LNAAEFESLSR
Trigger: CCTAGACAAGCTTTCAAATTCCGCAGCATTCAGCAACGTGTATGCAAATTGCAACAGGCACACTCCAGAACC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
CDS-3UTR TCA 90 bp TCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCTACCCAGAACATCCAGCGCGCTaGTCATCTGGCACAGGAAGA +
Preference number: 4 (lower is better)
Translates to: SCSGLIILIYRRKHSFYPEHPAR*SSGTGR
Trigger: TCTTCCTGTGCCAGATGATCAGCGCGCTGGATGTTC...TGGGTAGAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp GTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTGATGTAGTCTTTTGGTaGCTGTTGAGTGATGGTTGG +
Preference number: 4 (lower is better)
Translates to: VRSMRGMTGVQENHSREIDVVFW*LLSDGW
Trigger: CCAACCATCACTCAACAGTCACCAAAAGACTACATC...AATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp TCTTTCTACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACTCTCCCGAGGGTCAATaGTGTAGTCTTTTGGTGACT +
Preference number: 4 (lower is better)
Translates to: SFYPYVRSMRGMTGVQENSPEGQ*CSLLVT
Trigger: AGTCACCAAAAGACTACATCATTGACCCTCGGGAGA...GTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTAGAAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp TCAAAAAGACTAACACCAGCTAGACATAGTCACGAGTTTAACAACAATGTCCACGATGACAAGGGTTCCTaGGCCAGGCTTCATGGTGAC +
Preference number: 4 (lower is better)
Translates to: SKRLTPARHSHEFNNNVHDDKGS*ARLHGD
Trigger: GTCACCATGAAGCCTGGCTCAGGAACCCTTGTCATC...GTGGACATTGTTGTTAAACTCGTGACTATGTCTAGCTGGTGTTAGTCTTTTTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp CACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTTGCGGTCCCATTCCAAAGTaGGGGAGTCCAGTGTGGGAT +
Preference number: 4 (lower is better)
Translates to: HFAPQFILMYHLTESCSCGPIPK*GSPVWD
Trigger: ATCCCACACTGGACTCCCTCACTTTGGAATGGGACC...GCAAGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp TTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCTACCCTTATCGCTTCCTCTGTaGTCTGACTGCCTGGCCCCA +
Preference number: 4 (lower is better)
Translates to: FLLWSHNTHIPQKTFFLPLSLPL*SDCLAP
Trigger: TGGGGCCAGGCAGTCAGATCACAGAGGAAGCGATAA...GGGTAGAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp GGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTAGACATTGGCACAGACTCAAACACATCCTCTaGACTCACAAAACCAGAGTC +
Preference number: 4 (lower is better)
Translates to: GMTGVQENHSREIRHWHRLKHIL*THKTRV
Trigger: GACTCTGGTTTTGTGAGTTCAGAGGATGTGTTTGAG...TCTGTGCCAATGTCTAATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020939.16
CDS-3UTR TCA 90 bp TCAAAAAGACTAACACCAGCTAGACATAGTCACGAGTTTAACAACAATGTCCACCGCACATTAGACCTATaGACCAGCCTTGGGTCGCGA +
Preference number: 4 (lower is better)
Translates to: SKRLTPARHSHEFNNNVHRTLDL*TSLGSR
Trigger: TCGCGACCCAAGGCTGGTTCATAGGTCTAATGTGCG...GTGGACATTGTTGTTAAACTCGTGACTATGTCTAGCTGGTGTTAGTCTTTTTGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp GAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTCGCACATTAGACCTATaGACCAGCCTTGGGTCGCGA +
Preference number: 4 (lower is better)
Translates to: ESCSCSGLIILIYRRKHSRTLDL*TSLGSR
Trigger: TCGCGACCCAAGGCTGGTTCATAGGTCTAATGTGCG...AGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp AGAGGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTAGACATTGGCACTCAGCAAAATTAAGATaGGGAGAGCAACAGCGCACA +
Preference number: 4 (lower is better)
Translates to: RGMTGVQENHSREIRHWHSAKLR*GEQQRT
Trigger: TGTGCGCTGTTGCTCTCCTCATCTTAATTTTGCTGA...GTGCCAATGTCTAATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp AGAGGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTAGACATTGGCACCACAGCCCTGCATCATaGATTGCATCTTCATACTCA +
Preference number: 4 (lower is better)
Translates to: RGMTGVQENHSREIRHWHHSPAS*IASSYS
Trigger: TGAGTATGAAGATGCAATGCATGATGCAGGGCTGTG...GTGCCAATGTCTAATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCCTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp TCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCTACCCAGTGGCGCCACAGCCCTaGATCATGCATTGCATCTTC +
Preference number: 4 (lower is better)
Translates to: SCSGLIILIYRRKHSFYPVAPQP*IMHCIF
Trigger: GAAGATGCAATGCATGATGCAGGGCTGTGGCGCCAC...TGGGTAGAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp TATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCGTGGCGCCACAGCCCTaGATCATGCATTGCATCTTC +
Preference number: 4 (lower is better)
Translates to: YHLTESCSCSGLIILIYRVAPQP*IMHCIF
Trigger: GAAGATGCAATGCATGATGCAGGGCTGTGGCGCCAC...GCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGACTCAGTCAAATGATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp CACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTTGCAGGTCTTCTCCAGAATaGCCCATGACTGCAGCTGGC +
Preference number: 4 (lower is better)
Translates to: HFAPQFILMYHLTESCSCRSSPE*PMTAAG
Trigger: GCCAGCTGCAGTCATGGGGCATTCTGGAGAAGACCT...GCAAGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp TACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATTCCTCCTCCATTCTTCTTTaGCTTTGCCTGCACCTACAT +
Preference number: 4 (lower is better)
Translates to: YPYVRSMRGMTGVQENHSSSILL*LCLHLH
Trigger: ATGTAGGTGCAGGCAAAGGCAAAGAAGAATGGAGGA...GGAATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020939.16
CDS-3UTR GCA 90 bp TTCTACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATCTGGATTTCAGGGTCTaGATGAGCATCCTCCTTTTC +
Preference number: 4 (lower is better)
Translates to: FYPYVRSMRGMTGVQENHLDFRV*MSILLF
Trigger: GAAAAGGAGGATGCTCATGCAGACCCTGAAATCCAG...ATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp TCTTTCTACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCTGGATTTCAGGGTCTaGATGAGCATCCTCCTTTTC +
Preference number: 4 (lower is better)
Translates to: SFYPYVRSMRGMTGVQENLDFRV*MSILLF
Trigger: GAAAAGGAGGATGCTCATGCAGACCCTGAAATCCAG...GTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTAGAAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp TTCTACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATAACAAAGGAGTTCATTaGGTTGACAGGAGAAGGGGC +
Preference number: 4 (lower is better)
Translates to: FYPYVRSMRGMTGVQENHNKGVH*VDRRRG
Trigger: GCCCCTTCTCCTGTCAACGCAATGAACTCCTTTGTT...ATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTAGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
CDS-3UTR CCA 90 bp AGACAACAAAACCATCCTGTACACCCGACAATGACAGAGCTTTGGAGGCCTGATCTTAATTCCTCTTTGTaGCTTTCATTGCCCTCTGGA +
Preference number: 4 (lower is better)
Translates to: RQQNHPVHPTMTELWRPDLNSSL*LSLPSG
Trigger: TCCAGAGGGCAATGAAAGCCACAAAGAGGAATTAAG...ATCAGGCCTCCAAAGCTCTGTCATTGTCGGGTGTACAGGATGGTTTTGTTGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp TACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATTCCTGTATTTGGATACATTaGCCACAACCACAGACGTCC +
Preference number: 4 (lower is better)
Translates to: YPYVRSMRGMTGVQENHSCIWIH*PQPQTS
Trigger: GGACGTCTGTGGTTGTGGCCAATGTATCCAAATACA...GGAATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp GAGTCAGGGAATGCTAATTGTCTGAAGGCACTGCGTGTGTCTTGCCCTGCATTTATCTTCTTCTCAATGTaGCGCCTGTTTCTTTTAGAG +
Preference number: 4 (lower is better)
Translates to: ESGNANCLKALRVSCPAFIFFSM*RLFLLE
Trigger: CTCTAAAAGAAACAGGCGCCACATTGAGAAGAAGAT...AAATGCAGGGCAAGACACACGCAGTGCCTTCAGACAATTAGCATTCCCTGACTC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp CACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTTGCGGCATAGTGACTGTATaGCTGCAGCCCTGGCAGCAT +
Preference number: 4 (lower is better)
Translates to: HFAPQFILMYHLTESCSCGIVTV*LQPWQH
Trigger: ATGCTGCCAGGGCTGCAGCCATACAGTCACTATGCC...GCAAGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp CTCTCAAAAAGACTAACACCAGCTAGACATAGTCACGAGTTTAACAACAATGTCGCCATTTGGGTGGCTTaGGGGGTCCCATTCCAAAGT +
Preference number: 4 (lower is better)
Translates to: LSKRLTPARHSHEFNNNVAIWVA*GVPFQS
Trigger: ACTTTGGAATGGGACCCCCCAAGCCACCCAAATGGC...GACATTGTTGTTAAACTCGTGACTATGTCTAGCTGGTGTTAGTCTTTTTGAGAG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp TCTTTCTACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATCATCTTCCTTCATaGGCTGGATTTCAGGGTCTG +
Preference number: 4 (lower is better)
Translates to: SFYPYVRSMRGMTGVQENHHLPS*AGFQGL
Trigger: CAGACCCTGAAATCCAGCCCATGAAGGAAGATGATG...GTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTAGAAAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp GTCCCACATACTTACTACATTCATCAACTAGCCTGCTTCTCACACAGGAGAACACATCATCTTCCTTCATaGGCTGGATTTCAGGGTCTG +
Preference number: 4 (lower is better)
Translates to: VPHTYYIHQLACFSHRRTHHLPS*AGFQGL
Trigger: CAGACCCTGAAATCCAGCCCATGAAGGAAGATGATG...TGTTCTCCTGTGTGAGAAGCAGGCTAGTTGATGAATGTAGTAAGTATGTGGGAC
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
CDS-3UTR TCA 90 bp TTCTACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATGATGTAGTCTTTTGGTaGCTGTTGAGTGATGGTTGG +
Preference number: 4 (lower is better)
Translates to: FYPYVRSMRGMTGVQENHDVVFW*LLSDGW
Trigger: CCAACCATCACTCAACAGTCACCAAAAGACTACATC...ATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp ATGCACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTGATGACAAGGGTTCCTaGGCCAGGCTTCATGGTGAC +
Preference number: 4 (lower is better)
Translates to: MHFAPQFILMYHLTESCSDDKGS*ARLHGD
Trigger: GTCACCATGAAGCCTGGCTCAGGAACCCTTGTCATC...AGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp TTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCTACCCATAGATGACAAGGGTTCCTaGGCCAGGCTTCATGGTGAC +
Preference number: 4 (lower is better)
Translates to: LLWSHNTHIPQKTFFLPIDDKGS*ARLHGD
Trigger: GTCACCATGAAGCCTGGCTCAGGAACCCTTGTCATC...TATGGGTAGAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp GAAGCTCTAGAGAACACTACAGCAACACTCTTCACAATGACAACGGAATTCATAGTACAGTGTGTTTGCTaGTGTGAGAATCCGAGGTGG +
Preference number: 4 (lower is better)
Translates to: EALENTTATLFTMTTEFIVQCVC*CENPRW
Trigger: CCACCTCGGATTCTCACATCAGCAAACACACTGTAC...TATGAATTCCGTTGTCATTGTGAAGAGTGTTGCTGTAGTGTTCTCTAGAGCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp CTCTCAAAAAGACTAACACCAGCTAGACATAGTCACGAGTTTAACAACAATGTCCCAGGCCCATTCGATTaGAAACCATTCAGGGGCTTC +
Preference number: 4 (lower is better)
Translates to: LSKRLTPARHSHEFNNNVPGPFD*KPFRGF
Trigger: GAAGCCCCTGAATGGTTTTCAATCGAATGGGCCTGG...GACATTGTTGTTAAACTCGTGACTATGTCTAGCTGGTGTTAGTCTTTTTGAGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp GATGCAACTGTCATAAGTAACTCATGTAGCAAGTATATACTGTACACACTGTTCGGTCCCATTCCAAAGTaGGGGAGTCCAGTGTGGGAT +
Preference number: 4 (lower is better)
Translates to: DATVISNSCSKYILYTLFGPIPK*GSPVWD
Trigger: ATCCCACACTGGACTCCCTCACTTTGGAATGGGACC...GAACAGTGTGTACAGTATATACTTGCTACATGAGTTACTTATGACAGTTGCATC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp ATGTATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACGCTTCCTCTGTGATCTaGCTGCCTGGCCCCACTGAT +
Preference number: 4 (lower is better)
Translates to: MYHLTESCSCSGLIILIYASSVI*LPGPTD
Trigger: ATCAGTGGGGCCAGGCAGTCAGATCACAGAGGAAGC...GTATATGAGTATTATGAGACCAGAGCAAGAACATGACTCAGTCAAATGATACAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp TCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCTTATCGCTTCCTCTGTaGTCTGACTGCCTGGCCCCA +
Preference number: 4 (lower is better)
Translates to: SCSCSGLIILIYRRKHSFLSLPL*SDCLAP
Trigger: TGGGGCCAGGCAGTCAGATCACAGAGGAAGCGATAA...GAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp ATGCACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTTTATCGCTTCCTCTGTaGTCTGACTGCCTGGCCCCA +
Preference number: 4 (lower is better)
Translates to: MHFAPQFILMYHLTESCSLSLPL*SDCLAP
Trigger: TGGGGCCAGGCAGTCAGATCACAGAGGAAGCGATAA...AGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTGCAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp CACTCTGAACAAAAACGTATGCACTTTGCACCCCAGTTCATATTAATGTATCATCGCACATTAGACCTATaGACCAGCCTTGGGTCGCGA +
Preference number: 4 (lower is better)
Translates to: HSEQKRMHFAPQFILMYHRTLDL*TSLGSR
Trigger: TCGCGACCCAAGGCTGGTTCATAGGTCTAATGTGCG...ATGATACATTAATATGAACTGGGGTGCAAAGTGCATACGTTTTTGTTCAGAGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp ATGTATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACAGGAGCCATCCTCGTTaGATTGGCCGTTCACCCCCT +
Preference number: 4 (lower is better)
Translates to: MYHLTESCSCSGLIILIYRSHPR*IGRSPP
Trigger: AGGGGGTGAACGGCCAATTCAACGAGGATGGCTCCT...GTATATGAGTATTATGAGACCAGAGCAAGAACATGACTCAGTCAAATGATACAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
CDS-3UTR GCA 90 bp TTCTACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATCTTTGTGGCTTTCATTaGCCTCTGGAGTTAGAAACG +
Preference number: 4 (lower is better)
Translates to: FYPYVRSMRGMTGVQENHLCGFH*PLELET
Trigger: CGTTTCTAACTCCAGAGGGCAATGAAAGCCACAAAG...ATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp CACTCTGAACAAAAACGTATGCACTTTGCACCCCAGTTCATATTAATGTATCATGTGGCGCCACAGCCCTaGATCATGCATTGCATCTTC +
Preference number: 4 (lower is better)
Translates to: HSEQKRMHFAPQFILMYHVAPQP*IMHCIF
Trigger: GAAGATGCAATGCATGATGCAGGGCTGTGGCGCCAC...ATGATACATTAATATGAACTGGGGTGCAAAGTGCATACGTTTTTGTTCAGAGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp ATGTATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACGTCCCAGTGCACCTCTaGCAGCGTACTGTTCACCAC +
Preference number: 4 (lower is better)
Translates to: MYHLTESCSCSGLIILIYVPVHL*QRTVHH
Trigger: GTGGTGAACAGTACGCTGGCAGAGGTGCACTGGGAC...GTATATGAGTATTATGAGACCAGAGCAAGAACATGACTCAGTCAAATGATACAT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp GTTCCTAATAGTCTCTCAAAAAGACTAACACCAGCTAGACATAGTCACGAGTTTTGTACTCAGTCAGGATaGCATTTGGGTGGCTTGGGG +
Preference number: 4 (lower is better)
Translates to: VPNSLSKRLTPARHSHEFCTQSG*HLGGLG
Trigger: CCCCAAGCCACCCAAATGGCATCCTGACTGAGTACA...AAACTCGTGACTATGTCTAGCTGGTGTTAGTCTTTTTGAGAGACTATTAGGAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp TTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCTACCCTGCCATTGCTTTGCCTaGACCTACATCAGGTGGAGG +
Preference number: 4 (lower is better)
Translates to: FLLWSHNTHIPQKTFFLPCHCFA*TYIRWR
Trigger: CCTCCACCTGATGTAGGTGCAGGCAAAGCAATGGCA...GGGTAGAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp TTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCTACCCGGCTTGCCATTGCTTTaGCTGCACCTACATCAGGTG +
Preference number: 4 (lower is better)
Translates to: FLLWSHNTHIPQKTFFLPGLPLL*LHLHQV
Trigger: CACCTGATGTAGGTGCAGGCAAAGCAATGGCAAGCC...GGGTAGAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp CAGCGAGCATTAGTGGATGCAACTGTCATAAGTAACTCATGTAGCAAGTATATAGGCTTGCCATTGCTTTaGCTGCACCTACATCAGGTG +
Preference number: 4 (lower is better)
Translates to: QRALVDATVISNSCSKYIGLPLL*LHLHQV
Trigger: CACCTGATGTAGGTGCAGGCAAAGCAATGGCAAGCC...TATATACTTGCTACATGAGTTACTTATGACAGTTGCATCCACTAATGCTCGCTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp TATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCAGCGCGCTGATCATCTaGCACAGGAAGAGAATCAGG +
Preference number: 4 (lower is better)
Translates to: YHLTESCSCSGLIILIYRSALII*HRKRIR
Trigger: CCTGATTCTCTTCCTGTGCCAGATGATCAGCGCGCT...GCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGACTCAGTCAAATGATA
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp CACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTTGCAGCGCGCTGATCATCTaGCACAGGAAGAGAATCAGG +
Preference number: 4 (lower is better)
Translates to: HFAPQFILMYHLTESCSCSALII*HRKRIR
Trigger: CCTGATTCTCTTCCTGTGCCAGATGATCAGCGCGCT...GCAAGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp TCTTTCTACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCCTTTGGCCTCACACTaGATTACAATATTCTCCCGA +
Preference number: 4 (lower is better)
Translates to: SFYPYVRSMRGMTGVQENPLASH*ITIFSR
Trigger: TCGGGAGAATATTGTAATCCAGTGTGAGGCCAAAGG...GTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTAGAAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp TATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCAGTCCAGGAAAAGCTTaGGGGAGGTTTCCCTTTGGC +
Preference number: 4 (lower is better)
Translates to: YHLTESCSCSGLIILIYRSPGKA*GRFPFG
Trigger: GCCAAAGGGAAACCTCCCCCAAGCTTTTCCTGGACT...GCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGACTCAGTCAAATGATA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp TTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCTACCCATAAATGGGGGCTGGAGTTaGAGTAGGAGCGACAACCCT +
Preference number: 4 (lower is better)
Translates to: LLWSHNTHIPQKTFFLPINGGWS*SRSDNP
Trigger: AGGGTTGTCGCTCCTACTCCAACTCCAGCCCCCATT...TATGGGTAGAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020939.16
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp AATAGTCTCTCAAAAAGACTAACACCAGCTAGACATAGTCACGAGTTTAACAACAATGGGGGCTGGAGTTaGAGTAGGAGCGACAACCCT +
Preference number: 4 (lower is better)
Translates to: NSLSKRLTPARHSHEFNNNGGWS*SRSDNP
Trigger: AGGGTTGTCGCTCCTACTCCAACTCCAGCCCCCATT...GTTGTTAAACTCGTGACTATGTCTAGCTGGTGTTAGTCTTTTTGAGAGACTATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp GAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTGGAGACAGCTTCAGTTaGGCTGTGGTCTGTGTTCCA +
Preference number: 4 (lower is better)
Translates to: ESCSCSGLIILIYRRKHSGDSFS*AVVCVP
Trigger: TGGAACACAGACCACAGCCCAACTGAAGCTGTCTCC...AGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp CTCTCAAAAAGACTAACACCAGCTAGACATAGTCACGAGTTTAACAACAATGTCCAGCTCACTTTGTACTaGAGGCCAGGCCCATTCGAT +
Preference number: 4 (lower is better)
Translates to: LSKRLTPARHSHEFNNNVQLTLY*RPGPFD
Trigger: ATCGAATGGGCCTGGCCTCCAGTACAAAGTGAGCTG...GACATTGTTGTTAAACTCGTGACTATGTCTAGCTGGTGTTAGTCTTTTTGAGAG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp GAGAAACCAATTTATTGGCAAATGAAACTGAGCATCCCTTCAACCATAGGTGGTTCGTCACCATCTTTCTaGCGCCAGCTCACTTTGTAC +
Preference number: 4 (lower is better)
Translates to: EKPIYWQMKLSIPSTIGGSSPSF*RQLTLY
Trigger: GTACAAAGTGAGCTGGCGCCAGAAAGATGGTGACGA...ACCACCTATGGTTGAAGGGATGCTCAGTTTCATTTGCCAATAAATTGGTTTCTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
CDS-3UTR CCA 90 bp GAAGCTCTAGAGAACACTACAGCAACACTCTTCACAATGACAACGGAATTCATATCGTCACCATCTTTCTaGCGCCAGCTCACTTTGTAC +
Preference number: 4 (lower is better)
Translates to: EALENTTATLFTMTTEFISSPSF*RQLTLY
Trigger: GTACAAAGTGAGCTGGCGCCAGAAAGATGGTGACGA...TATGAATTCCGTTGTCATTGTGAAGAGTGTTGCTGTAGTGTTCTCTAGAGCTTC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp GGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTAGACATTGGCACAGAAACTTTTATCAGGTATaGGACAAAGGTTGGTGTGCC +
Preference number: 4 (lower is better)
Translates to: GMTGVQENHSREIRHWHRNFYQV*DKGWCA
Trigger: GGCACACCAACCTTTGTCCCATACCTGATAAAAGTT...TCTGTGCCAATGTCTAATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp GAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTCCGGCTTGCCATTGCTaGTCCTGTCTCAAACACATC +
Preference number: 4 (lower is better)
Translates to: ESCSCSGLIILIYRRKHSPACHC*SCLKHI
Trigger: GATGTGTTTGAGACAGGACCAGCAATGGCAAGCCGG...AGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGACTC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020939.16
ENSMUST00000218062.2
CDS-3UTR CCA 90 bp CAGCGAGCATTAGTGGATGCAACTGTCATAAGTAACTCATGTAGCAAGTATATACCTATGAACCAGCCTTaGGTCGCGATATCCACTTGC +
Preference number: 4 (lower is better)
Translates to: QRALVDATVISNSCSKYIPMNQP*VAISTC
Trigger: GCAAGTGGATATCGCGACCCAAGGCTGGTTCATAGG...TATATACTTGCTACATGAGTTACTTATGACAGTTGCATCCACTAATGCTCGCTG
44% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220123.2
3UTR CAA 72 bp CCTATGCTCCCAGTTTCAGTTCGAATTATCTCTGCCTaGGAAAAGTTCCTTTCCAACAACAGTAGCGTAGGA +
Preference number: 4 (lower is better)
Translates to: PMLPVSVRIISA*EKFLSNNSSVG
Trigger: TCCTACGCTACTGTTGTTGGAAAGGAACTTTTCCAAGGCAGAGATAATTCGAACTGAAACTGGGAGCATAGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp TTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCTACCCATAGTGACAGAAATGGTGTaGTGGACGGCTCCTAATGCG +
Preference number: 4 (lower is better)
Translates to: LLWSHNTHIPQKTFFLPIVTEMV*WTAPNA
Trigger: CGCATTAGGAGCCGTCCATCACACCATTTCTGTCAC...TATGGGTAGAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp GATGCAACTGTCATAAGTAACTCATGTAGCAAGTATATACTGTACACACTGTTCGTGACAGAAATGGTGTaGTGGACGGCTCCTAATGCG +
Preference number: 4 (lower is better)
Translates to: DATVISNSCSKYILYTLFVTEMV*WTAPNA
Trigger: CGCATTAGGAGCCGTCCATCACACCATTTCTGTCAC...GAACAGTGTGTACAGTATATACTTGCTACATGAGTTACTTATGACAGTTGCATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp TTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCTACCCGTACAGTGTGTTTGCTaGTGTGAGAATCCGAGGTGG +
Preference number: 4 (lower is better)
Translates to: FLLWSHNTHIPQKTFFLPVQCVC*CENPRW
Trigger: CCACCTCGGATTCTCACATCAGCAAACACACTGTAC...GGGTAGAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp TCAAAAAGACTAACACCAGCTAGACATAGTCACGAGTTTAACAACAATGTCCACGTACAGTGTGTTTGCTaGTGTGAGAATCCGAGGTGG +
Preference number: 4 (lower is better)
Translates to: SKRLTPARHSHEFNNNVHVQCVC*CENPRW
Trigger: CCACCTCGGATTCTCACATCAGCAAACACACTGTAC...GTGGACATTGTTGTTAAACTCGTGACTATGTCTAGCTGGTGTTAGTCTTTTTGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp GTCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCCAGGCCCATTCGATTaGAAACCATTCAGGGGCTTC +
Preference number: 4 (lower is better)
Translates to: VMFLLWSHNTHIPQKTFFPGPFD*KPFRGF
Trigger: GAAGCCCCTGAATGGTTTTCAATCGAATGGGCCTGG...AAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp GAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTACTGCCTGGCCCCACTaGTGTCTGTGCATAGAAATA +
Preference number: 4 (lower is better)
Translates to: ESCSCSGLIILIYRRKHSTAWPH*CLCIEI
Trigger: TATTTCTATGCACAGACATCAGTGGGGCCAGGCAGT...AGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp TCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCTACCCAACTGCCTGGCCCCACTaGTGTCTGTGCATAGAAATA +
Preference number: 4 (lower is better)
Translates to: SCSGLIILIYRRKHSFYPTAWPH*CLCIEI
Trigger: TATTTCTATGCACAGACATCAGTGGGGCCAGGCAGT...TGGGTAGAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp CAGCGAGCATTAGTGGATGCAACTGTCATAAGTAACTCATGTAGCAAGTATATACCCAATGCTGTTCTCTaGCATGACACGGAAGGAGTA +
Preference number: 4 (lower is better)
Translates to: QRALVDATVISNSCSKYIPNAVL*HDTEGV
Trigger: TACTCCTTCCGTGTCATGGCAGAGAACAGCATTGGG...TATATACTTGCTACATGAGTTACTTATGACAGTTGCATCCACTAATGCTCGCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp TTAGTGGATGCAACTGTCATAAGTAACTCATGTAGCAAGTATATACTGTACACAAGGTCTTCTCCAGAATaGCCCATGACTGCAGCTGGC +
Preference number: 4 (lower is better)
Translates to: LVDATVISNSCSKYILYTRSSPE*PMTAAG
Trigger: GCCAGCTGCAGTCATGGGGCATTCTGGAGAAGACCT...TGTGTACAGTATATACTTGCTACATGAGTTACTTATGACAGTTGCATCCACTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp ATGTATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACGTCGCGATATCCACTTaGCGGCTTGCCATTGCTGGT +
Preference number: 4 (lower is better)
Translates to: MYHLTESCSCSGLIILIYVAIST*RLAIAG
Trigger: ACCAGCAATGGCAAGCCGGCAAGTGGATATCGCGAC...GTATATGAGTATTATGAGACCAGAGCAAGAACATGACTCAGTCAAATGATACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020939.16
ENSMUST00000218062.2
CDS-3UTR CCA 90 bp AATAGTCTCTCAAAAAGACTAACACCAGCTAGACATAGTCACGAGTTTAACAACAGCGCGCTGATCATCTaGCACAGGAAGAGAATCAGG +
Preference number: 4 (lower is better)
Translates to: NSLSKRLTPARHSHEFNNSALII*HRKRIR
Trigger: CCTGATTCTCTTCCTGTGCCAGATGATCAGCGCGCT...GTTGTTAAACTCGTGACTATGTCTAGCTGGTGTTAGTCTTTTTGAGAGACTATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp CACTCTGAACAAAAACGTATGCACTTTGCACCCCAGTTCATATTAATGTATCATTGTCCAGCGTTGTGTTaGCCGTACACGTGTAGGTTC +
Preference number: 4 (lower is better)
Translates to: HSEQKRMHFAPQFILMYHCPALC*PYTCRF
Trigger: GAACCTACACGTGTACGGCCAACACAACGCTGGACA...ATGATACATTAATATGAACTGGGGTGCAAAGTGCATACGTTTTTGTTCAGAGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp CACTCTGAACAAAAACGTATGCACTTTGCACCCCAGTTCATATTAATGTATCATATCGTAAATGGGGGCTaGAGTTGGAGTAGGAGCGAC +
Preference number: 4 (lower is better)
Translates to: HSEQKRMHFAPQFILMYHIVNGG*SWSRSD
Trigger: GTCGCTCCTACTCCAACTCCAGCCCCCATTTACGAT...ATGATACATTAATATGAACTGGGGTGCAAAGTGCATACGTTTTTGTTCAGAGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000020939.16
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp TTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCTACCCATAATCGTAAATGGGGGCTaGAGTTGGAGTAGGAGCGAC +
Preference number: 4 (lower is better)
Translates to: LLWSHNTHIPQKTFFLPIIVNGG*SWSRSD
Trigger: GTCGCTCCTACTCCAACTCCAGCCCCCATTTACGAT...TATGGGTAGAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000020939.16
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp TTTGGAGGCCTGATATTTGTGTGGGGAACACCACTTCAAATAAAGTTGTTCCTAGCTTCAGTTGGGCTGTaGTCTGTGTTCCAGAAACTT +
Preference number: 4 (lower is better)
Translates to: FGGLIFVWGTPLQIKLFLASVGL*SVFQKL
Trigger: AAGTTTCTGGAACACAGACCACAGCCCAACTGAAGC...TAGGAACAACTTTATTTGAAGTGGTGTTCCCCACACAAATATCAGGCCTCCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp TCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCGGAGACAGCTTCAGTTaGGCTGTGGTCTGTGTTCCA +
Preference number: 4 (lower is better)
Translates to: SCSCSGLIILIYRRKHSFGDSFS*AVVCVP
Trigger: TGGAACACAGACCACAGCCCAACTGAAGCTGTCTCC...GAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp CACTCTGAACAAAAACGTATGCACTTTGCACCCCAGTTCATATTAATGTATCATCAGCTCACTTTGTACTaGAGGCCAGGCCCATTCGAT +
Preference number: 4 (lower is better)
Translates to: HSEQKRMHFAPQFILMYHQLTLY*RPGPFD
Trigger: ATCGAATGGGCCTGGCCTCCAGTACAAAGTGAGCTG...ATGATACATTAATATGAACTGGGGTGCAAAGTGCATACGTTTTTGTTCAGAGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp CACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTTGCTCGTCACCATCTTTCTaGCGCCAGCTCACTTTGTAC +
Preference number: 4 (lower is better)
Translates to: HFAPQFILMYHLTESCSCSSPSF*RQLTLY
Trigger: GTACAAAGTGAGCTGGCGCCAGAAAGATGGTGACGA...GCAAGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp TTAGTGGATGCAACTGTCATAAGTAACTCATGTAGCAAGTATATACTGTACACAGGCATAGTGACTGTATaGCTGCAGCCCTGGCAGCAT +
Preference number: 4 (lower is better)
Translates to: LVDATVISNSCSKYILYTGIVTV*LQPWQH
Trigger: ATGCTGCCAGGGCTGCAGCCATACAGTCACTATGCC...TGTGTACAGTATATACTTGCTACATGAGTTACTTATGACAGTTGCATCCACTAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp GAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTGCACCTACATCAGGTaGAGGAATACCAGCTTCGTC +
Preference number: 4 (lower is better)
Translates to: ESCSCSGLIILIYRRKHSCTYIR*RNTSFV
Trigger: GACGAAGCTGGTATTCCTCCACCTGATGTAGGTGCA...AGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp GTTCCTAATAGTCTCTCAAAAAGACTAACACCAGCTAGACATAGTCACGAGTTTTGCACCTACATCAGGTaGAGGAATACCAGCTTCGTC +
Preference number: 4 (lower is better)
Translates to: VPNSLSKRLTPARHSHEFCTYIR*RNTSFV
Trigger: GACGAAGCTGGTATTCCTCCACCTGATGTAGGTGCA...AAACTCGTGACTATGTCTAGCTGGTGTTAGTCTTTTTGAGAGACTATTAGGAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp ATGCACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTCCGGCTTGCCATTGCTaGTCCTGTCTCAAACACATC +
Preference number: 4 (lower is better)
Translates to: MHFAPQFILMYHLTESCSPACHC*SCLKHI
Trigger: GATGTGTTTGAGACAGGACCAGCAATGGCAAGCCGG...AGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTGCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020939.16
ENSMUST00000218062.2
CDS-3UTR CCA 90 bp CACTCTGAACAAAAACGTATGCACTTTGCACCCCAGTTCATATTAATGTATCATCCTATGAACCAGCCTTaGGTCGCGATATCCACTTGC +
Preference number: 4 (lower is better)
Translates to: HSEQKRMHFAPQFILMYHPMNQP*VAISTC
Trigger: GCAAGTGGATATCGCGACCCAAGGCTGGTTCATAGG...ATGATACATTAATATGAACTGGGGTGCAAAGTGCATACGTTTTTGTTCAGAGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp TTTGGAGGCCTGATATTTGTGTGGGGAACACCACTTCAAATAAAGTTGTTCCTACATCATCTTCCTTCATaGGCTGGATTTCAGGGTCTG +
Preference number: 4 (lower is better)
Translates to: FGGLIFVWGTPLQIKLFLHHLPS*AGFQGL
Trigger: CAGACCCTGAAATCCAGCCCATGAAGGAAGATGATG...TAGGAACAACTTTATTTGAAGTGGTGTTCCCCACACAAATATCAGGCCTCCAAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp CCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCCATCATCTTCCTTCATaGGCTGGATTTCAGGGTCTG +
Preference number: 4 (lower is better)
Translates to: PQFILMYHLTESCSCSGLHHLPS*AGFQGL
Trigger: CAGACCCTGAAATCCAGCCCATGAAGGAAGATGATG...GAGACCAGAGCAAGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp CTGAATGCTGCGGAATTTGAAAGCTTGTCTAGGCAGAGTGAATCATTTAGTACTGATGTAGTCTTTTGGTaGCTGTTGAGTGATGGTTGG +
Preference number: 4 (lower is better)
Translates to: LNAAEFESLSRQSESFSTDVVFW*LLSDGW
Trigger: CCAACCATCACTCAACAGTCACCAAAAGACTACATC...AGTACTAAATGATTCACTCTGCCTAGACAAGCTTTCAAATTCCGCAGCATTCAG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
CDS-3UTR TCA 90 bp CAGCGAGCATTAGTGGATGCAACTGTCATAAGTAACTCATGTAGCAAGTATATATCTCCCGAGGGTCAATaGTGTAGTCTTTTGGTGACT +
Preference number: 4 (lower is better)
Translates to: QRALVDATVISNSCSKYISPEGQ*CSLLVT
Trigger: AGTCACCAAAAGACTACATCATTGACCCTCGGGAGA...TATATACTTGCTACATGAGTTACTTATGACAGTTGCATCCACTAATGCTCGCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp ATGCACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTTGGTGCCCTGGAAGGTaGGGATCTTCTTCTCAATGT +
Preference number: 4 (lower is better)
Translates to: MHFAPQFILMYHLTESCSWCPGR*GSSSQC
Trigger: ACATTGAGAAGAAGATCCTCACCTTCCAGGGCACCA...AGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTGCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp TTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCTACCCATATGGTGCCCTGGAAGGTaGGGATCTTCTTCTCAATGT +
Preference number: 4 (lower is better)
Translates to: LLWSHNTHIPQKTFFLPIWCPGR*GSSSQC
Trigger: ACATTGAGAAGAAGATCCTCACCTTCCAGGGCACCA...TATGGGTAGAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp ATGCACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTACTGCCTGGCCCCACTaGTGTCTGTGCATAGAAATA +
Preference number: 4 (lower is better)
Translates to: MHFAPQFILMYHLTESCSTAWPH*CLCIEI
Trigger: TATTTCTATGCACAGACATCAGTGGGGCCAGGCAGT...AGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTGCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp TCAAAAAGACTAACACCAGCTAGACATAGTCACGAGTTTAACAACAATGTCCACTCCTTCATAGGTCTCTaGCTTCCCCTCACTCATGAT +
Preference number: 4 (lower is better)
Translates to: SKRLTPARHSHEFNNNVHSFIGL*LPLTHD
Trigger: ATCATGAGTGAGGGGAAGGCAGAGACCTATGAAGGA...GTGGACATTGTTGTTAAACTCGTGACTATGTCTAGCTGGTGTTAGTCTTTTTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp TTTGGAGGCCTGATATTTGTGTGGGGAACACCACTTCAAATAAAGTTGTTCCTACTTTGTGGCTTTCATTaGCCTCTGGAGTTAGAAACG +
Preference number: 4 (lower is better)
Translates to: FGGLIFVWGTPLQIKLFLLCGFH*PLELET
Trigger: CGTTTCTAACTCCAGAGGGCAATGAAAGCCACAAAG...TAGGAACAACTTTATTTGAAGTGGTGTTCCCCACACAAATATCAGGCCTCCAAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp TCAAAAAGACTAACACCAGCTAGACATAGTCACGAGTTTAACAACAATGTCCACCAAAGCAGGCCTGTTTaGAATGACCTGGTACAGTGT +
Preference number: 4 (lower is better)
Translates to: SKRLTPARHSHEFNNNVHQSRPV*NDLVQC
Trigger: ACACTGTACCAGGTCATTGCAAACAGGCCTGCTTTG...GTGGACATTGTTGTTAAACTCGTGACTATGTCTAGCTGGTGTTAGTCTTTTTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp ATGCACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTCCCAATGCTGTTCTCTaGCATGACACGGAAGGAGTA +
Preference number: 4 (lower is better)
Translates to: MHFAPQFILMYHLTESCSPNAVL*HDTEGV
Trigger: TACTCCTTCCGTGTCATGGCAGAGAACAGCATTGGG...AGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTGCAT
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp TCTTTCTACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACATTCTGATCTGGTTCTaGGGCTTTTGTAAGATACTG +
Preference number: 4 (lower is better)
Translates to: SFYPYVRSMRGMTGVQENILIWF*GFCKIL
Trigger: CAGTATCTTACAAAAGCCGCAGAACCAGATCAGAAT...GTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTAGAAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp GAACAAAAACGTATGCACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTAGAATGCCCCATGACTaGAGCTGGCTCTGGTGCAAA +
Preference number: 4 (lower is better)
Translates to: EQKRMHFAPQFILMYHLTRMPHD*SWLWCK
Trigger: TTTGCACCAGAGCCAGCTGCAGTCATGGGGCATTCT...AGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTGCATACGTTTTTGTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp TCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCTACCCAAACAAAGGAGTTCATTaGGTTGACAGGAGAAGGGGC +
Preference number: 4 (lower is better)
Translates to: SCSGLIILIYRRKHSFYPNKGVH*VDRRRG
Trigger: GCCCCTTCTCCTGTCAACGCAATGAACTCCTTTGTT...TGGGTAGAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
CDS-3UTR GCA 90 bp TATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCAACAAAGGAGTTCATTaGGTTGACAGGAGAAGGGGC +
Preference number: 4 (lower is better)
Translates to: YHLTESCSCSGLIILIYRNKGVH*VDRRRG
Trigger: GCCCCTTCTCCTGTCAACGCAATGAACTCCTTTGTT...GCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGACTCAGTCAAATGATA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
CDS-3UTR GCA 90 bp CACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTTGCAACAAAGGAGTTCATTaGGTTGACAGGAGAAGGGGC +
Preference number: 4 (lower is better)
Translates to: HFAPQFILMYHLTESCSCNKGVH*VDRRRG
Trigger: GCCCCTTCTCCTGTCAACGCAATGAACTCCTTTGTT...GCAAGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
CDS-3UTR GCA 90 bp TTTCTTCTCTCACGGAAGATTGGTGTGCGGCGTTTAAATAATTTTTCATGCAGGACTATGTCAAGGGCTTaGAAGAGAAAACGAAGTCGC +
Preference number: 4 (lower is better)
Translates to: FLLSRKIGVRRLNNFSCRTMSRA*KRKRSR
Trigger: GCGACTTCGTTTTCTCTTGCAAGCCCTTGACATAGT...CCTGCATGAAAAATTATTTAAACGCCGCACACCAATCTTCCGTGAGAGAAGAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000217907.2
CDS-3UTR GCA 90 bp ATGTATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACTGCCATTGCTTTGCCTaGACCTACATCAGGTGGAGG +
Preference number: 4 (lower is better)
Translates to: MYHLTESCSCSGLIILIYCHCFA*TYIRWR
Trigger: CCTCCACCTGATGTAGGTGCAGGCAAAGCAATGGCA...GTATATGAGTATTATGAGACCAGAGCAAGAACATGACTCAGTCAAATGATACAT
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp TTCTACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATCATCTATTTTTCTGCTaGGGTCATCGAGAGCAATTT +
Preference number: 4 (lower is better)
Translates to: FYPYVRSMRGMTGVQENHHLFFC*GHREQF
Trigger: AAATTGCTCTCGATGACCCCAGCAGAAAAATAGATG...ATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTAGAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp TTCATTTGGGGAATCACTTTAAAACAAGCTTTACCTGTACACATCAAAGGTGTCGTCCTTCCACAGCCATaGGATTCTGATCTGGTTCTG +
Preference number: 4 (lower is better)
Translates to: FIWGITLKQALPVHIKGVVLPQP*DSDLVL
Trigger: CAGAACCAGATCAGAATCCCATGGCTGTGGAAGGAC...GACACCTTTGATGTGTACAGGTAAAGCTTGTTTTAAAGTGATTCCCCAAATGAA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
CDS-3UTR CCA 90 bp GAACAAAAACGTATGCACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTCAGCTCACTTTGTACTaGAGGCCAGGCCCATTCGAT +
Preference number: 4 (lower is better)
Translates to: EQKRMHFAPQFILMYHLTQLTLY*RPGPFD
Trigger: ATCGAATGGGCCTGGCCTCCAGTACAAAGTGAGCTG...AGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTGCATACGTTTTTGTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp GAACAAAAACGTATGCACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTCCTATGAACCAGCCTTaGGTCGCGATATCCACTTGC +
Preference number: 4 (lower is better)
Translates to: EQKRMHFAPQFILMYHLTPMNQP*VAISTC
Trigger: GCAAGTGGATATCGCGACCCAAGGCTGGTTCATAGG...AGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTGCATACGTTTTTGTTC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp TTTCTTCTCTCACGGAAGATTGGTGTGCGGCGTTTAAATAATTTTTCATGCAGGGGTACTGGCTTTCACTaGAGAGCAGCACAAAAATTC +
Preference number: 4 (lower is better)
Translates to: FLLSRKIGVRRLNNFSCRGTGFH*RAAQKF
Trigger: GAATTTTTGTGCTGCTCTCCAGTGAAAGCCAGTACC...CCTGCATGAAAAATTATTTAAACGCCGCACACCAATCTTCCGTGAGAGAAGAAA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 1 transcripts:
ENSMUST00000217907.2
CDS-3UTR CCA 90 bp TCAAAAAGACTAACACCAGCTAGACATAGTCACGAGTTTAACAACAATGTCCACGTCATGAAGGAGCTTTaGATCGAGAGGAACATCCAG +
Preference number: 4 (lower is better)
Translates to: SKRLTPARHSHEFNNNVHVMKEL*IERNIQ
Trigger: CTGGATGTTCCTCTCGATCCAAAGCTCCTTCATGAC...GTGGACATTGTTGTTAAACTCGTGACTATGTCTAGCTGGTGTTAGTCTTTTTGA
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000220123.2
3UTR CAA 72 bp CACCTTCAAAGAAATAGGCTGCTTCTGCTGGATGGTTaGAGTGTGATTAAATCTGGCATAGCAGATATAGTC +
Preference number: 4 (lower is better)
Translates to: HLQRNRLLLLDG*SVIKSGIADIV
Trigger: GACTATATCTGCTATGCCAGATTTAATCACACTCAAACCATCCAGCAGAAGCAGCCTATTTCTTTGAAGGTG
42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000219939.2
CDS-3UTR TCA 90 bp ATGCACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTTCTCCCGAGGGTCAATaGTGTAGTCTTTTGGTGACT +
Preference number: 4 (lower is better)
Translates to: MHFAPQFILMYHLTESCSSPEGQ*CSLLVT
Trigger: AGTCACCAAAAGACTACATCATTGACCCTCGGGAGA...AGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTGCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp GAACAAAAACGTATGCACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTCAGGCCTGTTTGCAATaGCCTGGTACAGTGTGTTTG +
Preference number: 4 (lower is better)
Translates to: EQKRMHFAPQFILMYHLTQACLQ*PGTVCL
Trigger: CAAACACACTGTACCAGGTCATTGCAAACAGGCCTG...AGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTGCATACGTTTTTGTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp GAACAAAAACGTATGCACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTTGGTGCCCTGGAAGGTaGGGATCTTCTTCTCAATGT +
Preference number: 4 (lower is better)
Translates to: EQKRMHFAPQFILMYHLTWCPGR*GSSSQC
Trigger: ACATTGAGAAGAAGATCCTCACCTTCCAGGGCACCA...AGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTGCATACGTTTTTGTTC
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp GAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTCAGCAAAATTAAGATaGGGAGAGCAACAGCGCACA +
Preference number: 4 (lower is better)
Translates to: ESCSCSGLIILIYRRKHSSAKLR*GEQQRT
Trigger: TGTGCGCTGTTGCTCTCCTCATCTTAATTTTGCTGA...AGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGACTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp TTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCTACCCTCAGCAAAATTAAGATaGGGAGAGCAACAGCGCACA +
Preference number: 4 (lower is better)
Translates to: FLLWSHNTHIPQKTFFLPSAKLR*GEQQRT
Trigger: TGTGCGCTGTTGCTCTCCTCATCTTAATTTTGCTGA...GGGTAGAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp CACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTTGCCCGCCTGCAGATAAGTaGTTCTTCTTCGGCATTATT +
Preference number: 4 (lower is better)
Translates to: HFAPQFILMYHLTESCSCPPADK*FFFGII
Trigger: AATAATGCCGAAGAAGAAGCACTTATCTGCAGGCGG...GCAAGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp CAGAGTGAATCATTTAGTACTTTAGGCATGCTGTTGTACGCTTTTACTTCTGCACCGCCTGCAGATAAGTaGTTCTTCTTCGGCATTATT +
Preference number: 4 (lower is better)
Translates to: QSESFSTLGMLLYAFTSAPPADK*FFFGII
Trigger: AATAATGCCGAAGAAGAAGCACTTATCTGCAGGCGG...TGCAGAAGTAAAAGCGTACAACAGCATGCCTAAAGTACTAAATGATTCACTCTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
CDS-3UTR GCA 90 bp ATGCACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTTCCTTCATAGGTCTCTaGCTTCCCCTCACTCATGAT +
Preference number: 4 (lower is better)
Translates to: MHFAPQFILMYHLTESCSSFIGL*LPLTHD
Trigger: ATCATGAGTGAGGGGAAGGCAGAGACCTATGAAGGA...AGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTGCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp ATGCACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTCGCCATCTATTTTTCTaGTGGGGTCATCGAGAGCAA +
Preference number: 4 (lower is better)
Translates to: MHFAPQFILMYHLTESCSRHLFF*WGHREQ
Trigger: TTGCTCTCGATGACCCCAGCAGAAAAATAGATGGCG...AGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTGCAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp TATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCCACAGCCCTGCATCATaGATTGCATCTTCATACTCA +
Preference number: 4 (lower is better)
Translates to: YHLTESCSCSGLIILIYRHSPAS*IASSYS
Trigger: TGAGTATGAAGATGCAATGCATGATGCAGGGCTGTG...GCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGACTCAGTCAAATGATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp CACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTTGCCACAGCCCTGCATCATaGATTGCATCTTCATACTCA +
Preference number: 4 (lower is better)
Translates to: HFAPQFILMYHLTESCSCHSPAS*IASSYS
Trigger: TGAGTATGAAGATGCAATGCATGATGCAGGGCTGTG...GCAAGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp TATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCATTCTTCTTTGCCTTTaGCTGCACCTACATCAGGTG +
Preference number: 4 (lower is better)
Translates to: YHLTESCSCSGLIILIYRILLCL*LHLHQV
Trigger: CACCTGATGTAGGTGCAGGCAAAGGCAAAGAAGAAT...GCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGACTCAGTCAAATGATA
41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020939.16
CDS-3UTR GCA 90 bp CACTCTGAACAAAAACGTATGCACTTTGCACCCCAGTTCATATTAATGTATCATCTGGATTTCAGGGTCTaGATGAGCATCCTCCTTTTC +
Preference number: 4 (lower is better)
Translates to: HSEQKRMHFAPQFILMYHLDFRV*MSILLF
Trigger: GAAAAGGAGGATGCTCATGCAGACCCTGAAATCCAG...ATGATACATTAATATGAACTGGGGTGCAAAGTGCATACGTTTTTGTTCAGAGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 5 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp TCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCTACCCAAACCCGCTCACTCTGTaGAAGTCTCTGAAAGGAATT +
Preference number: 4 (lower is better)
Translates to: SCSGLIILIYRRKHSFYPNPLTL*KSLKGI
Trigger: AATTCCTTTCAGAGACTTCCACAGAGTGAGCGGGTT...TGGGTAGAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp CCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCCCTGTACTATCCTTTTaGGCCACGGGAATTTCTAAT +
Preference number: 4 (lower is better)
Translates to: PQFILMYHLTESCSCSGLPVLSF*ATGISN
Trigger: ATTAGAAATTCCCGTGGCCCAAAAGGATAGTACAGG...GAGACCAGAGCAAGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGG
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp CTCTCAAAAAGACTAACACCAGCTAGACATAGTCACGAGTTTAACAACAATGTCGTGGGGATTAAGGTGTaGTCATGTTTCACTCTGCAT +
Preference number: 4 (lower is better)
Translates to: LSKRLTPARHSHEFNNNVVGIKV*SCFTLH
Trigger: ATGCAGAGTGAAACATGACCACACCTTAATCCCCAC...GACATTGTTGTTAAACTCGTGACTATGTCTAGCTGGTGTTAGTCTTTTTGAGAG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp GTCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTGCTTCAGTTGGGCTGTaGTCTGTGTTCCAGAAACTT +
Preference number: 4 (lower is better)
Translates to: VMFLLWSHNTHIPQKTFFASVGL*SVFQKL
Trigger: AAGTTTCTGGAACACAGACCACAGCCCAACTGAAGC...AAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGAC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp AATAGTCTCTCAAAAAGACTAACACCAGCTAGACATAGTCACGAGTTTAACAACGCTTCAGTTGGGCTGTaGTCTGTGTTCCAGAAACTT +
Preference number: 4 (lower is better)
Translates to: NSLSKRLTPARHSHEFNNASVGL*SVFQKL
Trigger: AAGTTTCTGGAACACAGACCACAGCCCAACTGAAGC...GTTGTTAAACTCGTGACTATGTCTAGCTGGTGTTAGTCTTTTTGAGAGACTATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp GAAGCTCTAGAGAACACTACAGCAACACTCTTCACAATGACAACGGAATTCATAAACTTTTATCAGGTATaGGACAAAGGTTGGTGTGCC +
Preference number: 4 (lower is better)
Translates to: EALENTTATLFTMTTEFINFYQV*DKGWCA
Trigger: GGCACACCAACCTTTGTCCCATACCTGATAAAAGTT...TATGAATTCCGTTGTCATTGTGAAGAGTGTTGCTGTAGTGTTCTCTAGAGCTTC
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp ATGCACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTCATCATCTTCCTTCATaGGCTGGATTTCAGGGTCTG +
Preference number: 4 (lower is better)
Translates to: MHFAPQFILMYHLTESCSHHLPS*AGFQGL
Trigger: CAGACCCTGAAATCCAGCCCATGAAGGAAGATGATG...AGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTGCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp GTCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTTCTTTTGGTGACTGTTaGGTGATGGTTGGAGGTTGT +
Preference number: 4 (lower is better)
Translates to: VMFLLWSHNTHIPQKTFFSFGDC*VMVGGC
Trigger: ACAACCTCCAACCATCACTCAACAGTCACCAAAAGA...AAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp GAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTATTTCAGGGTCTGCATaGGCATCCTCCTTTTCTTTA +
Preference number: 4 (lower is better)
Translates to: ESCSCSGLIILIYRRKHSISGSA*ASSFSL
Trigger: TAAAGAAAAGGAGGATGCTCATGCAGACCCTGAAAT...AGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGACTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp TCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCTACCCAATTTCAGGGTCTGCATaGGCATCCTCCTTTTCTTTA +
Preference number: 4 (lower is better)
Translates to: SCSGLIILIYRRKHSFYPISGSA*ASSFSL
Trigger: TAAAGAAAAGGAGGATGCTCATGCAGACCCTGAAAT...TGGGTAGAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp CAGCGAGCATTAGTGGATGCAACTGTCATAAGTAACTCATGTAGCAAGTATATACTCAAACACATCCTCTaGACTCACAAAACCAGAGTN +
Preference number: 4 (lower is better)
Translates to: QRALVDATVISNSCSKYILKHIL*THKTRV
Trigger: NACTCTGGTTTTGTGAGTTCAGAGGATGTGTTTGAG...TATATACTTGCTACATGAGTTACTTATGACAGTTGCATCCACTAATGCTCGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000218062.2
CDS-3UTR GCA 90 bp ATGTATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCCATCTATTTTTCTaGTGGGGTCATCGAGAGCAA +
Preference number: 4 (lower is better)
Translates to: MYHLTESCSCSGLIILIYRHLFF*WGHREQ
Trigger: TTGCTCTCGATGACCCCAGCAGAAAAATAGATGGCG...GTATATGAGTATTATGAGACCAGAGCAAGAACATGACTCAGTCAAATGATACAT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp CACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTTGCCCATCCAAAATATTATaGCCGGAGGTAATCCAATCG +
Preference number: 4 (lower is better)
Translates to: HFAPQFILMYHLTESCSCPSKIL*PEVIQS
Trigger: CGATTGGATTACCTCCGGCCATAATATTTTGGATGG...GCAAGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp CAGCGAGCATTAGTGGATGCAACTGTCATAAGTAACTCATGTAGCAAGTATATACCATCCAAAATATTATaGCCGGAGGTAATCCAATCG +
Preference number: 4 (lower is better)
Translates to: QRALVDATVISNSCSKYIPSKIL*PEVIQS
Trigger: CGATTGGATTACCTCCGGCCATAATATTTTGGATGG...TATATACTTGCTACATGAGTTACTTATGACAGTTGCATCCACTAATGCTCGCTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp CTGAATGCTGCGGAATTTGAAAGCTTGTCTAGGCAGAGTGAATCATTTAGTACTCATCTATTTTTCTGCTaGGGTCATCGAGAGCAATTT +
Preference number: 4 (lower is better)
Translates to: LNAAEFESLSRQSESFSTHLFFC*GHREQF
Trigger: AAATTGCTCTCGATGACCCCAGCAGAAAAATAGATG...AGTACTAAATGATTCACTCTGCCTAGACAAGCTTTCAAATTCCGCAGCATTCAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
CDS-3UTR CCA 90 bp GAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTCCTGTACTATCCTTTTaGGCCACGGGAATTTCTAAT +
Preference number: 4 (lower is better)
Translates to: ESCSCSGLIILIYRRKHSPVLSF*ATGISN
Trigger: ATTAGAAATTCCCGTGGCCCAAAAGGATAGTACAGG...AGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGACTC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp GTCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTGTGGGGATTAAGGTGTaGTCATGTTTCACTCTGCAT +
Preference number: 4 (lower is better)
Translates to: VMFLLWSHNTHIPQKTFFVGIKV*SCFTLH
Trigger: ATGCAGAGTGAAACATGACCACACCTTAATCCCCAC...AAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp CACTCTGAACAAAAACGTATGCACTTTGCACCCCAGTTCATATTAATGTATCATGTGGGGATTAAGGTGTaGTCATGTTTCACTCTGCAT +
Preference number: 4 (lower is better)
Translates to: HSEQKRMHFAPQFILMYHVGIKV*SCFTLH
Trigger: ATGCAGAGTGAAACATGACCACACCTTAATCCCCAC...ATGATACATTAATATGAACTGGGGTGCAAAGTGCATACGTTTTTGTTCAGAGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp GATGCAACTGTCATAAGTAACTCATGTAGCAAGTATATACTGTACACACTGTTCTGTATTTGGATACATTaGCCACAACCACAGACGTCC +
Preference number: 4 (lower is better)
Translates to: DATVISNSCSKYILYTLFCIWIH*PQPQTS
Trigger: GGACGTCTGTGGTTGTGGCCAATGTATCCAAATACA...GAACAGTGTGTACAGTATATACTTGCTACATGAGTTACTTATGACAGTTGCATC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp TCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCTGTATTTGGATACATTaGCCACAACCACAGACGTCC +
Preference number: 4 (lower is better)
Translates to: SCSCSGLIILIYRRKHSFCIWIH*PQPQTS
Trigger: GGACGTCTGTGGTTGTGGCCAATGTATCCAAATACA...GAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp ATGTATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACTCAGCAAAATTAAGATaGGGAGAGCAACAGCGCACA +
Preference number: 4 (lower is better)
Translates to: MYHLTESCSCSGLIILIYSAKLR*GEQQRT
Trigger: TGTGCGCTGTTGCTCTCCTCATCTTAATTTTGCTGA...GTATATGAGTATTATGAGACCAGAGCAAGAACATGACTCAGTCAAATGATACAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp GTCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTATTTCAGGGTCTGCATaGGCATCCTCCTTTTCTTTA +
Preference number: 4 (lower is better)
Translates to: VMFLLWSHNTHIPQKTFFISGSA*ASSFSL
Trigger: TAAAGAAAAGGAGGATGCTCATGCAGACCCTGAAAT...AAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGAC
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 5 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp TTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCTACCCCCCTGCATCATGCATTaGATCTTCATACTCAATGAT +
Preference number: 4 (lower is better)
Translates to: FLLWSHNTHIPQKTFFLPPCIMH*IFILND
Trigger: ATCATTGAGTATGAAGATGCAATGCATGATGCAGGG...GGGTAGAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAA
39% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp GTTCCTAATAGTCTCTCAAAAAGACTAACACCAGCTAGACATAGTCACGAGTTTCCCTGCATCATGCATTaGATCTTCATACTCAATGAT +
Preference number: 4 (lower is better)
Translates to: VPNSLSKRLTPARHSHEFPCIMH*IFILND
Trigger: ATCATTGAGTATGAAGATGCAATGCATGATGCAGGG...AAACTCGTGACTATGTCTAGCTGGTGTTAGTCTTTTTGAGAGACTATTAGGAAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR GCA 90 bp TATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCATTCTGATCTGGTTCTaGGGCTTTTGTAAGATACTG +
Preference number: 4 (lower is better)
Translates to: YHLTESCSCSGLIILIYRILIWF*GFCKIL
Trigger: CAGTATCTTACAAAAGCCGCAGAACCAGATCAGAAT...GCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGACTCAGTCAAATGATA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp ATGCACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTCTTAATTCCTCTTTGTaGCTTTCATTGCCCTCTGGA +
Preference number: 4 (lower is better)
Translates to: MHFAPQFILMYHLTESCSLNSSL*LSLPSG
Trigger: TCCAGAGGGCAATGAAAGCCACAAAGAGGAATTAAG...AGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTGCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp TTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCTACCCATAAACTTTTATCAGGTATaGGACAAAGGTTGGTGTGCC +
Preference number: 4 (lower is better)
Translates to: LLWSHNTHIPQKTFFLPINFYQV*DKGWCA
Trigger: GGCACACCAACCTTTGTCCCATACCTGATAAAAGTT...TATGGGTAGAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp TATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCTCCAGCGGGTCTTGTTaGCAGGAATTTTTAAATCTA +
Preference number: 4 (lower is better)
Translates to: YHLTESCSCSGLIILIYRSSGSC*QEFLNL
Trigger: TAGATTTAAAAATTCCTGCCAACAAGACCCGCTGGA...GCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGACTCAGTCAAATGATA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp AACTTGACTTGTTTGGCTAGAAACCACAAAAGACAACAAAACCATCCTGTACACTCCAGCGGGTCTTGTTaGCAGGAATTTTTAAATCTA +
Preference number: 4 (lower is better)
Translates to: NLTCLARNHKRQQNHPVHSSGSC*QEFLNL
Trigger: TAGATTTAAAAATTCCTGCCAACAAGACCCGCTGGA...GTGTACAGGATGGTTTTGTTGTCTTTTGTGGTTTCTAGCCAAACAAGTCAAGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp TTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCTACCCTCTTTGATTTCCAAGTaGACTTCATTCTTTGCCATC +
Preference number: 4 (lower is better)
Translates to: FLLWSHNTHIPQKTFFLPSLISK*TSFFAI
Trigger: GATGGCAAAGAATGAAGTTCACTTGGAAATCAAAGA...GGGTAGAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp CAGCGAGCATTAGTGGATGCAACTGTCATAAGTAACTCATGTAGCAAGTATATATCTTTGATTTCCAAGTaGACTTCATTCTTTGCCATC +
Preference number: 4 (lower is better)
Translates to: QRALVDATVISNSCSKYISLISK*TSFFAI
Trigger: GATGGCAAAGAATGAAGTTCACTTGGAAATCAAAGA...TATATACTTGCTACATGAGTTACTTATGACAGTTGCATCCACTAATGCTCGCTG
38% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp ATGTATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACATTTCAGGGTCTGCATaGGCATCCTCCTTTTCTTTA +
Preference number: 4 (lower is better)
Translates to: MYHLTESCSCSGLIILIYISGSA*ASSFSL
Trigger: TAAAGAAAAGGAGGATGCTCATGCAGACCCTGAAAT...GTATATGAGTATTATGAGACCAGAGCAAGAACATGACTCAGTCAAATGATACAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp CACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTTGCTTTTTCAAAGGCTTGTaGTCTTCTGCATCACTGTAT +
Preference number: 4 (lower is better)
Translates to: HFAPQFILMYHLTESCSCFFKGL*SSASLY
Trigger: ATACAGTGATGCAGAAGATCACAAGCCTTTGAAAAA...GCAAGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220082.2
CDS-3UTR TCA 90 bp AACTTGACTTGTTTGGCTAGAAACCACAAAAGACAACAAAACCATCCTGTACACTTTTTCAAAGGCTTGTaGTCTTCTGCATCACTGTAT +
Preference number: 4 (lower is better)
Translates to: NLTCLARNHKRQQNHPVHFFKGL*SSASLY
Trigger: ATACAGTGATGCAGAAGATCACAAGCCTTTGAAAAA...GTGTACAGGATGGTTTTGTTGTCTTTTGTGGTTTCTAGCCAAACAAGTCAAGTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
CDS-3UTR TCA 90 bp GAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTTTTCAAAGGCTTGTaGTCTTCTGCATCACTTTCA +
Preference number: 4 (lower is better)
Translates to: ESCSCSGLIILIYRRKHSFFKGL*SSASLS
Trigger: TGAAAGTGATGCAGAAGATCACAAGCCTTTGAAAAA...AGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGACTC
38% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 1 transcripts:
ENSMUST00000218062.2
CDS-3UTR GCA 90 bp TTCATTTGGGGAATCACTTTAAAACAAGCTTTACCTGTACACATCAAAGGTGTCATTCTGATCTGGTTCTaGGGCTTTTGTAAGATACTG +
Preference number: 4 (lower is better)
Translates to: FIWGITLKQALPVHIKGVILIWF*GFCKIL
Trigger: CAGTATCTTACAAAAGCCGCAGAACCAGATCAGAAT...GACACCTTTGATGTGTACAGGTAAAGCTTGTTTTAAAGTGATTCCCCAAATGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
CDS-3UTR GCA 90 bp ATGCACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTAGGCTTGTGATCTTCTaGATCACTTTCAAAAGACCT +
Preference number: 4 (lower is better)
Translates to: MHFAPQFILMYHLTESCSRLVIF*ITFKRP
Trigger: AGGTCTTTTGAAAGTGATGCAGAAGATCACAAGCCT...AGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTGCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000218062.2
CDS-3UTR CCA 90 bp CACTCTGAACAAAAACGTATGCACTTTGCACCCCAGTTCATATTAATGTATCATCATCTATTTTTCTGCTaGGGTCATCGAGAGCAATTT +
Preference number: 4 (lower is better)
Translates to: HSEQKRMHFAPQFILMYHHLFFC*GHREQF
Trigger: AAATTGCTCTCGATGACCCCAGCAGAAAAATAGATG...ATGATACATTAATATGAACTGGGGTGCAAAGTGCATACGTTTTTGTTCAGAGTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp ATGTATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACCCTGTACTATCCTTTTaGGCCACGGGAATTTCTAAT +
Preference number: 4 (lower is better)
Translates to: MYHLTESCSCSGLIILIYPVLSF*ATGISN
Trigger: ATTAGAAATTCCCGTGGCCCAAAAGGATAGTACAGG...GTATATGAGTATTATGAGACCAGAGCAAGAACATGACTCAGTCAAATGATACAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp ATGCACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTATCTTCTTCTCAATGTaGCGCCTGTTTCTTTTAGAG +
Preference number: 4 (lower is better)
Translates to: MHFAPQFILMYHLTESCSIFFSM*RLFLLE
Trigger: CTCTAAAAGAAACAGGCGCCACATTGAGAAGAAGAT...AGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTGCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp TCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCATCTTCTTCTCAATGTaGCGCCTGTTTCTTTTAGAG +
Preference number: 4 (lower is better)
Translates to: SCSCSGLIILIYRRKHSFIFFSM*RLFLLE
Trigger: CTCTAAAAGAAACAGGCGCCACATTGAGAAGAAGAT...GAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CCA 90 bp TCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCTCCAGCGGGTCTTGTTaGCAGGAATTTTTAAATCTA +
Preference number: 4 (lower is better)
Translates to: SCSCSGLIILIYRRKHSFSSGSC*QEFLNL
Trigger: TAGATTTAAAAATTCCTGCCAACAAGACCCGCTGGA...GAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGA
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220082.2
ENSMUST00000220123.2
3UTR CAA 72 bp ATGCACTTTGCACCCCAGTTCATATTAATGTATCATTaGACTGAGTCATGTTCTTGCTCTGGTCTCATAATA +
Preference number: 4 (lower is better)
Translates to: MHFAPQFILMYH*TESCSCSGLII
Trigger: TATTATGAGACCAGAGCAAGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTGCAT
38% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp TTCAACTTGACTTGTTTGGCTAGAAACCACAAAAGACAACAAAACCATCCTGTATCTTTGATTTCCAAGTaGACTTCATTCTTTGCCATC +
Preference number: 4 (lower is better)
Translates to: FNLTCLARNHKRQQNHPVSLISK*TSFFAI
Trigger: GATGGCAAAGAATGAAGTTCACTTGGAAATCAAAGA...TACAGGATGGTTTTGTTGTCTTTTGTGGTTTCTAGCCAAACAAGTCAAGTTGAA
37% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR TCA 90 bp ATGCACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTTTTTTCAAAGGCTTGTaGTCTTCTGCATCACTGTAT +
Preference number: 4 (lower is better)
Translates to: MHFAPQFILMYHLTESCSFFKGL*SSASLY
Trigger: ATACAGTGATGCAGAAGATCACAAGCCTTTGAAAAA...AGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTGCAT
37% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220082.2
CDS-3UTR CCA 90 bp TTAGTGGATGCAACTGTCATAAGTAACTCATGTAGCAAGTATATACTGTACACATCCAGCGGGTCTTGTTaGCAGGAATTTTTAAATCTA +
Preference number: 4 (lower is better)
Translates to: LVDATVISNSCSKYILYTSSGSC*QEFLNL
Trigger: TAGATTTAAAAATTCCTGCCAACAAGACCCGCTGGA...TGTGTACAGTATATACTTGCTACATGAGTTACTTATGACAGTTGCATCCACTAA
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
3UTR CAA 72 bp ACTTCACATTTGTCTTTCACTGAAGGCATTGATGACTaGAAAGGAACTTTTGTCTTTGTGCTTTGTTATGTT +
Preference number: 4 (lower is better)
Translates to: TSHLSFTEGIDD*KGTFVFVLCYV
Trigger: AACATAACAAAGCACAAAGACAAAAGTTCCTTTCAAGTCATCAATGCCTTCAGTGAAAGACAAATGTGAAGT
35% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
CDS CCA 90 bp ACTAGGGACTCCCTCCGGTGTATGGAAGCCTCTGTCCGTGCTGGCTaGGCCCTCCCCTTTCCCGTTGACCACTCGGACGTTGAGGGCATA +
Preference number: 5 (lower is better)
Translates to: TRDSLRCMEASVRAG*ALPFPVDHSDVEGI
Trigger: TATGCCCTCAACGTCCGAGTGGTCAACGGGAAAGGGGAGGGCCCAGCCAGCACGGACAGAGGCTTCCATACACCGGAGGGAGTCCCTAGT
62% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS GCA 90 bp GTGTCCTCGGACACTCTTGGGAGGAACTGGGTCCCAGTGCACCTCTaGCAGCGTACTGTTCACCACGCTGACGCGAACATTTCCAGGAGC +
Preference number: 5 (lower is better)
Translates to: VSSDTLGRNWVPVHL*QRTVHHADANISRS
Trigger: GCTCCTGGAAATGTTCGCGTCAGCGTGGTGAACAGTACGCTGGCAGAGGTGCACTGGGACCCAGTTCCTCCCAAGAGTGTCCGAGGACAC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CCA 90 bp CCCTTTCCCGTTGACCACTCGGACGTTGAGGGCATAGTGACTGTATaGCTGCAGCCCTGGCAGCATGCCGTGAGTCTTGGTGCCCTGGAA +
Preference number: 5 (lower is better)
Translates to: PFPVDHSDVEGIVTV*LQPWQHAVSLGALE
Trigger: TTCCAGGGCACCAAGACTCACGGCATGCTGCCAGGGCTGCAGCCATACAGTCACTATGCCCTCAACGTCCGAGTGGTCAACGGGAAAGGG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CCA 90 bp GACCACTCGGACGTTGAGGGCATAGTGACTGTATGGCTGCAGCCCTaGCAGCATGCCGTGAGTCTTGGTGCCCTGGAAGGTGAGGATCTT +
Preference number: 5 (lower is better)
Translates to: DHSDVEGIVTVWLQP*QHAVSLGALEGEDL
Trigger: AAGATCCTCACCTTCCAGGGCACCAAGACTCACGGCATGCTGCCAGGGCTGCAGCCATACAGTCACTATGCCCTCAACGTCCGAGTGGTC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS TCA 90 bp GAACTGGGTCCCAGTGCACCTCTGCCAGCGTACTGTTCACCACGCTaGCGCGAACATTTCCAGGAGCCACCATTGGAAGGTCTTCTCCAG +
Preference number: 5 (lower is better)
Translates to: ELGPSAPLPAYCSPR*REHFQEPPLEGLLQ
Trigger: CTGGAGAAGACCTTCCAATGGTGGCTCCTGGAAATGTTCGCGTCAGCGTGGTGAACAGTACGCTGGCAGAGGTGCACTGGGACCCAGTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS GCA 90 bp CCTTGTAAGTGTCCTCGGACACTCTTGGGAGGAACTGGGTCCCAGTaGACCTCTGCCAGCGTACTGTTCACCACGCTGACGCGAACATTT +
Preference number: 5 (lower is better)
Translates to: PCKCPRTLLGGTGSQ*TSASVLFTTLTRTF
Trigger: AAATGTTCGCGTCAGCGTGGTGAACAGTACGCTGGCAGAGGTGCACTGGGACCCAGTTCCTCCCAAGAGTGTCCGAGGACACTTACAAGG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CCA 90 bp GGAGGTTGTACCAGATCGAGAGGAACATCCAGCGCGCTGATCATCTaGCACAGGAAGAGAATCAGGGGCACTCCGCCTGCAGATAAGTGC +
Preference number: 5 (lower is better)
Translates to: GGCTRSRGTSSALII*HRKRIRGTPPADKC
Trigger: GCACTTATCTGCAGGCGGAGTGCCCCTGATTCTCTTCCTGTGCCAGATGATCAGCGCGCTGGATGTTCCTCTCGATCTGGTACAACCTCC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218540.2
ENSMUST00000220126.2
CDS CCA 90 bp CACGGAAGGAGTAGTTCACATAGGGAGACAGCTTCAGTTGGGCTGTaGTCTGTGTTCCAGAAACTTCAGCCTGGTGGCGCCACAGCCCTG +
Preference number: 5 (lower is better)
Translates to: HGRSSSHRETASVGL*SVFQKLQPGGATAL
Trigger: CAGGGCTGTGGCGCCACCAGGCTGAAGTTTCTGGAACACAGACCACAGCCCAACTGAAGCTGTCTCCCTATGTGAACTACTCCTTCCGTG
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp GCCAACAAAGTACCCAACCACATCGCAGTCACATACACAGGTGTGTCCTCTGTGCCCTCCCCTTTCCCGTaGACCACTCGGACGTTGAGG +
Preference number: 5 (lower is better)
Translates to: ANKVPNHIAVTYTGVSSVPSPFP*TTRTLR
Trigger: CCTCAACGTCCGAGTGGTCAACGGGAAAGGGGAGGG...CACAGAGGACACACCTGTGTATGTGACTGCGATGTGGTTGGGTACTTTGTTGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS TCA 90 bp CGGATGCCTCGCTCGGCATACTTCTCCCAATGCTGTTCTCTGCCATaGCACGGAAGGAGTAGTTCACATAGGGAGACAGCTTCAGTTGGG +
Preference number: 5 (lower is better)
Translates to: RMPRSAYFSQCCSLP*HGRSSSHRETASVG
Trigger: CCCAACTGAAGCTGTCTCCCTATGTGAACTACTCCTTCCGTGTCATGGCAGAGAACAGCATTGGGAGAAGTATGCCGAGCGAGGCATCCG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CCA 90 bp TCCAGTAGTAAATCCGGTAGCCTTGTAAGTGTCCTCGGACACTCTTaGGAGGAACTGGGTCCCAGTGCACCTCTGCCAGCGTACTGTTCA +
Preference number: 5 (lower is better)
Translates to: SSSKSGSLVSVLGHS*EELGPSAPLPAYCS
Trigger: TGAACAGTACGCTGGCAGAGGTGCACTGGGACCCAGTTCCTCCCAAGAGTGTCCGAGGACACTTACAAGGCTACCGGATTTACTACTGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp GTACAGGAGTCAGGGAATGCTAATTGTCTGAAGGCACTGCGTGTGTCTTGCCCTAAGGAGCCATCCTCGTaGAATTGGCCGTTCACCCCC +
Preference number: 5 (lower is better)
Translates to: VQESGNANCLKALRVSCPKEPSS*NWPFTP
Trigger: GGGGGTGAACGGCCAATTCAACGAGGATGGCTCCTT...AGGGCAAGACACACGCAGTGCCTTCAGACAATTAGCATTCCCTGACTCCTGTAC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000218062.2
CDS TCA 90 bp AAGTTGTCCGGCTCTGTCCCTAGTCCTTCCACAGCCATGGGATTCTaGTCTGGTTCTGCGGCTTTTGTAAGATACTGCTCGGATGCCTCG +
Preference number: 5 (lower is better)
Translates to: KLSGSVPSPSTAMGF*SGSAAFVRYCSDAS
Trigger: CGAGGCATCCGAGCAGTATCTTACAAAAGCCGCAGAACCAGATCAGAATCCCATGGCTGTGGAAGGACTAGGGACAGAGCCGGACAACTT
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS TCA 90 bp TTCTGGCGCCAGCTCACTTTGTACTGGAGGCCAGGCCCATTCGATTaGAAACCATTCAGGGGCTTCCATGTAATCACCAAGTTGTCCGGC +
Preference number: 5 (lower is better)
Translates to: FWRQLTLYWRPGPFD*KPFRGFHVITKLSG
Trigger: GCCGGACAACTTGGTGATTACATGGAAGCCCCTGAATGGTTTTCAATCGAATGGGCCTGGCCTCCAGTACAAAGTGAGCTGGCGCCAGAA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CCA 90 bp GACAGCTTCAGTTGGGCTGTGGTCTGTGTTCCAGAAACTTCAGCCTaGTGGCGCCACAGCCCTGCATCATGCATTGCATCTTCATACTCA +
Preference number: 5 (lower is better)
Translates to: DSFSWAVVCVPETSA*WRHSPASCIASSYS
Trigger: TGAGTATGAAGATGCAATGCATGATGCAGGGCTGTGGCGCCACCAGGCTGAAGTTTCTGGAACACAGACCACAGCCCAACTGAAGCTGTC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp GTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTCCCTCCCCTTTCCCGTaGACCACTCGGACGTTGAGG +
Preference number: 5 (lower is better)
Translates to: VRSMRGMTGVQENHSREIPSPFP*TTRTLR
Trigger: CCTCAACGTCCGAGTGGTCAACGGGAAAGGGGAGGG...AATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGAC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp GGTCAGGTTTCTCAGGTTCTGGAGTGTGCCTGTTGCAATTTGCATACACGTTGCAAGGAGCCATCCTCGTaGAATTGGCCGTTCACCCCC +
Preference number: 5 (lower is better)
Translates to: GQVSQVLECACCNLHTRCKEPSS*NWPFTP
Trigger: GGGGGTGAACGGCCAATTCAACGAGGATGGCTCCTT...GCAACGTGTATGCAAATTGCAACAGGCACACTCCAGAACCTGAGAAACCTGACC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
CDS GCA 90 bp GGGATTCTGATCTGGTTCTGCGGCTTTTGTAAGATACTGCTCGGATaGCTCGCTCGGCATACTTCTCCCAATGCTGTTCTCTGCCATGAC +
Preference number: 5 (lower is better)
Translates to: GILIWFCGFCKILLG*LARHTSPNAVLCHD
Trigger: GTCATGGCAGAGAACAGCATTGGGAGAAGTATGCCGAGCGAGGCATCCGAGCAGTATCTTACAAAAGCCGCAGAACCAGATCAGAATCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CCA 90 bp AGCTTCAGTTGGGCTGTGGTCTGTGTTCCAGAAACTTCAGCCTGGTaGCGCCACAGCCCTGCATCATGCATTGCATCTTCATACTCAATG +
Preference number: 5 (lower is better)
Translates to: SFSWAVVCVPETSAW*RHSPASCIASSYSM
Trigger: CATTGAGTATGAAGATGCAATGCATGATGCAGGGCTGTGGCGCCACCAGGCTGAAGTTTCTGGAACACAGACCACAGCCCAACTGAAGCT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp GGTCAGGTTTCTCAGGTTCTGGAGTGTGCCTGTTGCAATTTGCATACACGTTGCCGGACAACAATGTTATaGGAGACGGCAGCTCCACGC +
Preference number: 5 (lower is better)
Translates to: GQVSQVLECACCNLHTRCRTTML*ETAAPR
Trigger: GCGTGGAGCTGCCGTCTCCAATAACATTGTTGTCCG...GCAACGTGTATGCAAATTGCAACAGGCACACTCCAGAACCTGAGAAACCTGACC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
CDS-3UTR CAA 90 bp GTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTGGTCGCGATATCCACTaGCCGGCTTGCCATTGCTGG +
Preference number: 5 (lower is better)
Translates to: VRSMRGMTGVQENHSREIGRDIH*PACHCW
Trigger: CCAGCAATGGCAAGCCGGCAAGTGGATATCGCGACC...AATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGAC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020939.16
ENSMUST00000218062.2
CDS TCA 90 bp GTGGAGGAATACCAGCTTCGTCCACAGTCGTTATCGCTTCCTCTGTaGTCTGACTGCCTGGCCCCACTGATGTCTGTGCATAGAAATAGA +
Preference number: 5 (lower is better)
Translates to: VEEYQLRPQSLSLPL*SDCLAPLMSVHRNR
Trigger: TCTATTTCTATGCACAGACATCAGTGGGGCCAGGCAGTCAGATCACAGAGGAAGCGATAACGACTGTGGACGAAGCTGGTATTCCTCCAC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp TCAGCTGAGGATAGTGCCAACAAAGTACCCAACCACATCGCAGTCACATACACAGAGTCCAGGAAAAGCTaGGGGGAGGTTTCCCTTTGG +
Preference number: 5 (lower is better)
Translates to: SAEDSANKVPNHIAVTYTESRKS*GEVSLW
Trigger: CCAAAGGGAAACCTCCCCCAAGCTTTTCCTGGACTC...TGTGTATGTGACTGCGATGTGGTTGGGTACTTTGTTGGCACTATCCTCAGCTGA
51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp AGAGGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTAGACATTGGCACGGGAGACAGCTTCAGTaGGGCTGTGGTCTGTGTTCC +
Preference number: 5 (lower is better)
Translates to: RGMTGVQENHSREIRHWHGRQLQ*GCGLCS
Trigger: GGAACACAGACCACAGCCCAACTGAAGCTGTCTCCC...GTGCCAATGTCTAATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCCTCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp AGAGACATTGAAGCTCTAGAGAACACTACAGCAACACTCTTCACAATGACAACGTGGCGCCAGCTCACTTaGTACTGGAGGCCAGGCCCA +
Preference number: 5 (lower is better)
Translates to: RDIEALENTTATLFTMTTWRQLT*YWRPGP
Trigger: TGGGCCTGGCCTCCAGTACAAAGTGAGCTGGCGCCA...CGTTGTCATTGTGAAGAGTGTTGCTGTAGTGTTCTCTAGAGCTTCAATGTCTCT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp GTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTAAGGAGCCATCCTCGTaGAATTGGCCGTTCACCCCC +
Preference number: 5 (lower is better)
Translates to: VRSMRGMTGVQENHSREIKEPSS*NWPFTP
Trigger: GGGGGTGAACGGCCAATTCAACGAGGATGGCTCCTT...AATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGAC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
CDS-3UTR CAA 90 bp GGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTAGACATTGGCACAGAAAGGAGCCATCCTCGTaGAATTGGCCGTTCACCCCC +
Preference number: 5 (lower is better)
Translates to: GMTGVQENHSREIRHWHRKEPSS*NWPFTP
Trigger: GGGGGTGAACGGCCAATTCAACGAGGATGGCTCCTT...TCTGTGCCAATGTCTAATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
CDS TCA 90 bp TTCCAAAGTGAGGGAGTCCAGTGTGGGATTAACAATTTTCAAAGATaGGGGAGCACTAGGGACTCCCTCCGGTGTATGGAAGCCTCTGTC +
Preference number: 5 (lower is better)
Translates to: FQSEGVQCGINNFQR*GSTRDSLRCMEASV
Trigger: GACAGAGGCTTCCATACACCGGAGGGAGTCCCTAGTGCTCCCTCATCTTTGAAAATTGTTAATCCCACACTGGACTCCCTCACTTTGGAA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS TCA 90 bp CCATTGCCTTCTTACCTTCGTCCACAGTCGTTATCGCTTCCTCTGTaGTCTGACTGCCTGGCCCCACTGATGTCTGTGCATAGAAATAGA +
Preference number: 5 (lower is better)
Translates to: PLPSYLRPQSLSLPL*SDCLAPLMSVHRNR
Trigger: TCTATTTCTATGCACAGACATCAGTGGGGCCAGGCAGTCAGATCACAGAGGAAGCGATAACGACTGTGGACGAAGGTAAGAAGGCAATGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
CDS-3UTR CAA 90 bp GGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTAGACATTGGCACAGACGGACAACAATGTTATaGGAGACGGCAGCTCCACGC +
Preference number: 5 (lower is better)
Translates to: GMTGVQENHSREIRHWHRRTTML*ETAAPR
Trigger: GCGTGGAGCTGCCGTCTCCAATAACATTGTTGTCCG...TCTGTGCCAATGTCTAATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp GGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTAGACATTGGCACAGACATTCAAAGGACACCTaGCTCCCCCTCTGGACGACT +
Preference number: 5 (lower is better)
Translates to: GMTGVQENHSREIRHWHRHSKDT*LPLWTT
Trigger: AGTCGTCCAGAGGGGGAGCAAGGTGTCCTTTGAATG...TCTGTGCCAATGTCTAATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp GGTCAGGTTTCTCAGGTTCTGGAGTGTGCCTGTTGCAATTTGCATACACGTTGCTTGGGCAGCTCTCCATaGTCCTTCAGCCACATAATG +
Preference number: 5 (lower is better)
Translates to: GQVSQVLECACCNLHTRCLGSSP*SFSHIM
Trigger: CATTATGTGGCTGAAGGACAATGGAGAGCTGCCCAA...GCAACGTGTATGCAAATTGCAACAGGCACACTCCAGAACCTGAGAAACCTGACC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
CDS-3UTR CAA 90 bp GAGTCAGGGAATGCTAATTGTCTGAAGGCACTGCGTGTGTCTTGCCCTGCATTTGAGAACCTTTCATCATaGGGCAGCTCTCCATTGTCC +
Preference number: 5 (lower is better)
Translates to: ESGNANCLKALRVSCPAFENLSS*GSSPLS
Trigger: GGACAATGGAGAGCTGCCCAATGATGAAAGGTTCTC...AAATGCAGGGCAAGACACACGCAGTGCCTTCAGACAATTAGCATTCCCTGACTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp GGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTAGACATTGGCACAGAGTAATGGGGCTATTGTaGTCGTCGCCTGGGGTCCAT +
Preference number: 5 (lower is better)
Translates to: GMTGVQENHSREIRHWHRVMGLL*SSPGVH
Trigger: ATGGACCCCAGGCGACGACAACAATAGCCCCATTAC...TCTGTGCCAATGTCTAATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp GAAGCTCTAGAGAACACTACAGCAACACTCTTCACAATGACAACGGAATTCATATGGCGCCAGCTCACTTaGTACTGGAGGCCAGGCCCA +
Preference number: 5 (lower is better)
Translates to: EALENTTATLFTMTTEFIWRQLT*YWRPGP
Trigger: TGGGCCTGGCCTCCAGTACAAAGTGAGCTGGCGCCA...TATGAATTCCGTTGTCATTGTGAAGAGTGTTGCTGTAGTGTTCTCTAGAGCTTC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CCA 90 bp CGTCGCCTGGGGTCCATGTCAGCTGAACACTTTTGTCAAGTTGATTaGTCAATTCTAAATCAAAGGGAGGATTCGGGACATCGACAACCC +
Preference number: 5 (lower is better)
Translates to: RRLGSMSAEHFCQVD*SILNQREDSGHRQP
Trigger: GGGTTGTCGATGTCCCGAATCCTCCCTTTGATTTAGAATTGACCAATCAACTTGACAAAAGTGTTCAGCTGACATGGACCCCAGGCGACG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
CDS-3UTR CAA 90 bp GTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTGGAAAGCACGAGGTTTaGAGGTGCCACGATCCAGTA +
Preference number: 5 (lower is better)
Translates to: VRSMRGMTGVQENHSREIGKHEV*RCHDPV
Trigger: TACTGGATCGTGGCACCTCAAAACCTCGTGCTTTCC...AATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGAC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp CAACAAAACCATCCTGTACACCCGACAATGACAGAGCTTTGGAGGCCTGATATTGGAAAGCACGAGGTTTaGAGGTGCCACGATCCAGTA +
Preference number: 5 (lower is better)
Translates to: QQNHPVHPTMTELWRPDIGKHEV*RCHDPV
Trigger: TACTGGATCGTGGCACCTCAAAACCTCGTGCTTTCC...AATATCAGGCCTCCAAAGCTCTGTCATTGTCGGGTGTACAGGATGGTTTTGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp TACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATTCCTTTGTAATGGGGCTATaGTTGTCGTCGCCTGGGGTC +
Preference number: 5 (lower is better)
Translates to: YPYVRSMRGMTGVQENHSFVMGL*LSSPGV
Trigger: GACCCCAGGCGACGACAACAATAGCCCCATTACAAA...GGAATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp CAACAAAACCATCCTGTACACCCGACAATGACAGAGCTTTGGAGGCCTGATATTAAGGAGTTCATTGCGTaGACAGGAGAAGGGGCCTCT +
Preference number: 5 (lower is better)
Translates to: QQNHPVHPTMTELWRPDIKEFIA*TGEGAS
Trigger: AGAGGCCCCTTCTCCTGTCAACGCAATGAACTCCTT...AATATCAGGCCTCCAAAGCTCTGTCATTGTCGGGTGTACAGGATGGTTTTGTTG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000218062.2
CDS-3UTR CAA 90 bp TTCTACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATTATCCACTTGCCGGCTaGCCATTGCTTTGCCTGCAC +
Preference number: 5 (lower is better)
Translates to: FYPYVRSMRGMTGVQENHYPLAG*PLLCLH
Trigger: GTGCAGGCAAAGCAATGGCAAGCCGGCAAGTGGATA...ATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTAGAA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS TCA 90 bp ATGACTGCAGCTGGCTCTGGTGCAAACCCCACATCATTCAGAGCTTaGACTTTTATCAGGTATGGGACAAAGGTTGGTGTGCCAGAAACA +
Preference number: 5 (lower is better)
Translates to: MTAAGSGANPTSFRA*TFIRYGTKVGVPET
Trigger: TGTTTCTGGCACACCAACCTTTGTCCCATACCTGATAAAAGTTCAAGCTCTGAATGATGTGGGGTTTGCACCAGAGCCAGCTGCAGTCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS TCA 90 bp CACAGTCGTTATCGCTTCCTCTGTGATCTGACTGCCTGGCCCCACTaGTGTCTGTGCATAGAAATAGAACTTGTACCGAGTGCTGAAATT +
Preference number: 5 (lower is better)
Translates to: HSRYRFLCDLTAWPH*CLCIEIELVPSAEI
Trigger: AATTTCAGCACTCGGTACAAGTTCTATTTCTATGCACAGACATCAGTGGGGCCAGGCAGTCAGATCACAGAGGAAGCGATAACGACTGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS CCA 90 bp TGGTCATGTTTCACTCTGCATTCAAAGGACACCTTGCTCCCCCTCTaGACGACTGCATACTCAGGTTGTTTAATGATCCTGGTTGGATCT +
Preference number: 5 (lower is better)
Translates to: WSCFTLHSKDTLLPL*TTAYSGCLMILVGS
Trigger: AGATCCAACCAGGATCATTAAACAACCTGAGTATGCAGTCGTCCAGAGGGGGAGCAAGGTGTCCTTTGAATGCAGAGTGAAACATGACCA
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CCA 90 bp ATGGGACAAAGGTTGGTGTGCCAGAAACAATGTATTTGGATACATTaGCCACAACCACAGACGTCCACTCATCGTCACCATCTTTCTGGC +
Preference number: 5 (lower is better)
Translates to: MGQRLVCQKQCIWIH*PQPQTSTHRHHLSG
Trigger: GCCAGAAAGATGGTGACGATGAGTGGACGTCTGTGGTTGTGGCCAATGTATCCAAATACATTGTTTCTGGCACACCAACCTTTGTCCCAT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp TGTTTGGCTAGAAACCACAAAAGACAACAAAACCATCCTGTACACCCGACAATGGGGGGAGGTTTCCCTTaGGCCTCACACTGGATTACA +
Preference number: 5 (lower is better)
Translates to: CLARNHKRQQNHPVHPTMGGGFP*ASHWIT
Trigger: TGTAATCCAGTGTGAGGCCAAAGGGAAACCTCCCCC...CATTGTCGGGTGTACAGGATGGTTTTGTTGTCTTTTGTGGTTTCTAGCCAAACA
48% GC, longest homopolymer 6 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp AGAGACATTGAAGCTCTAGAGAACACTACAGCAACACTCTTCACAATGACAACGGAGTCCAGGAAAAGCTaGGGGGAGGTTTCCCTTTGG +
Preference number: 5 (lower is better)
Translates to: RDIEALENTTATLFTMTTESRKS*GEVSLW
Trigger: CCAAAGGGAAACCTCCCCCAAGCTTTTCCTGGACTC...CGTTGTCATTGTGAAGAGTGTTGCTGTAGTGTTCTCTAGAGCTTCAATGTCTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp AGAGACATTGAAGCTCTAGAGAACACTACAGCAACACTCTTCACAATGACAACGCATTCAAAGGACACCTaGCTCCCCCTCTGGACGACT +
Preference number: 5 (lower is better)
Translates to: RDIEALENTTATLFTMTTHSKDT*LPLWTT
Trigger: AGTCGTCCAGAGGGGGAGCAAGGTGTCCTTTGAATG...CGTTGTCATTGTGAAGAGTGTTGCTGTAGTGTTCTCTAGAGCTTCAATGTCTCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp AATGCTAATTGTCTGAAGGCACTGCGTGTGTCTTGCCCTGCATTTTCTGAACTATTTGTAATGGGGCTATaGTTGTCGTCGCCTGGGGTC +
Preference number: 5 (lower is better)
Translates to: NANCLKALRVSCPAFSELFVMGL*LSSPGV
Trigger: GACCCCAGGCGACGACAACAATAGCCCCATTACAAA...TAGTTCAGAAAATGCAGGGCAAGACACACGCAGTGCCTTCAGACAATTAGCATT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp TTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCTACCCATACCCTCCCCTTTCCCGTaGACCACTCGGACGTTGAGG +
Preference number: 5 (lower is better)
Translates to: LLWSHNTHIPQKTFFLPIPSPFP*TTRTLR
Trigger: CCTCAACGTCCGAGTGGTCAACGGGAAAGGGGAGGG...TATGGGTAGAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp CACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTTGCGGTCGCGATATCCACTaGCCGGCTTGCCATTGCTGG +
Preference number: 5 (lower is better)
Translates to: HFAPQFILMYHLTESCSCGRDIH*PACHCW
Trigger: CCAGCAATGGCAAGCCGGCAAGTGGATATCGCGACC...GCAAGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTG
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000020939.16
ENSMUST00000218062.2
CDS-3UTR CAA 90 bp TCTTTCTACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACAAGGAGTTCATTGCGTaGACAGGAGAAGGGGCCTCT +
Preference number: 5 (lower is better)
Translates to: SFYPYVRSMRGMTGVQENKEFIA*TGEGAS
Trigger: AGAGGCCCCTTCTCCTGTCAACGCAATGAACTCCTT...GTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTAGAAAGA
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
CDS-3UTR CAA 90 bp GAAGCTCTAGAGAACACTACAGCAACACTCTTCACAATGACAACGGAATTCATAGGTCGCGATATCCACTaGCCGGCTTGCCATTGCCTT +
Preference number: 5 (lower is better)
Translates to: EALENTTATLFTMTTEFIGRDIH*PACHCL
Trigger: AAGGCAATGGCAAGCCGGCAAGTGGATATCGCGACC...TATGAATTCCGTTGTCATTGTGAAGAGTGTTGCTGTAGTGTTCTCTAGAGCTTC
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
CDS-3UTR CAA 90 bp AGAGACATTGAAGCTCTAGAGAACACTACAGCAACACTCTTCACAATGACAACGCGGCTTGCCATTGCTTaGCCTGCACCTACATCAGGT +
Preference number: 5 (lower is better)
Translates to: RDIEALENTTATLFTMTTRLAIA*PAPTSG
Trigger: ACCTGATGTAGGTGCAGGCAAAGCAATGGCAAGCCG...CGTTGTCATTGTGAAGAGTGTTGCTGTAGTGTTCTCTAGAGCTTCAATGTCTCT
48% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220123.2
CDS GCA 90 bp TGTGTTCCAGAAACTTCAGCCTGGTGGCGCCACAGCCCTGCATCATaGATTGCATCTTCATACTCAATGATGAATTTTGTAATGGGGCTA +
Preference number: 5 (lower is better)
Translates to: CVPETSAWWRHSPAS*IASSYSMMNFVMGL
Trigger: TAGCCCCATTACAAAATTCATCATTGAGTATGAAGATGCAATGCATGATGCAGGGCTGTGGCGCCACCAGGCTGAAGTTTCTGGAACACA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CCA 90 bp CGTCGCCTGGGGTCCATGTCAGCTGAACACTTTTGTCAAGTTGATTaGTCAATTCTAAATCAAAGGGAGGATTCGGGACATCGTAAATGG +
Preference number: 5 (lower is better)
Translates to: RRLGSMSAEHFCQVD*SILNQREDSGHRKW
Trigger: CCATTTACGATGTCCCGAATCCTCCCTTTGATTTAGAATTGACCAATCAACTTGACAAAAGTGTTCAGCTGACATGGACCCCAGGCGACG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000020939.16
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp AATGCTAATTGTCTGAAGGCACTGCGTGTGTCTTGCCCTGCATTTTCTGAACTAAGTGATGGTTGGAGGTaGTACCAGATCGAGAGGAAC +
Preference number: 5 (lower is better)
Translates to: NANCLKALRVSCPAFSELSDGWR*YQIERN
Trigger: GTTCCTCTCGATCTGGTACAACCTCCAACCATCACT...TAGTTCAGAAAATGCAGGGCAAGACACACGCAGTGCCTTCAGACAATTAGCATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
CDS-3UTR CAA 90 bp CCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCGTAATGGGGCTATTGTaGTCGTCGCCTGGGGTCCAT +
Preference number: 5 (lower is better)
Translates to: PQFILMYHLTESCSCSGLVMGLL*SSPGVH
Trigger: ATGGACCCCAGGCGACGACAACAATAGCCCCATTAC...GAGACCAGAGCAAGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp ATGTATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACTGGCGCCAGCTCACTTaGTACTGGAGGCCAGGCCCA +
Preference number: 5 (lower is better)
Translates to: MYHLTESCSCSGLIILIYWRQLT*YWRPGP
Trigger: TGGGCCTGGCCTCCAGTACAAAGTGAGCTGGCGCCA...GTATATGAGTATTATGAGACCAGAGCAAGAACATGACTCAGTCAAATGATACAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp AATGCTAATTGTCTGAAGGCACTGCGTGTGTCTTGCCCTGCATTTTCTGAACTATTCCAGGAGCCACCATaGGAAGGTCTTCTCCAGAAT +
Preference number: 5 (lower is better)
Translates to: NANCLKALRVSCPAFSELFQEPP*EGLLQN
Trigger: ATTCTGGAGAAGACCTTCCAATGGTGGCTCCTGGAA...TAGTTCAGAAAATGCAGGGCAAGACACACGCAGTGCCTTCAGACAATTAGCATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp GTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTTTCCTCCATTCTTCTTaGCCTTTGCCTGCACCTACA +
Preference number: 5 (lower is better)
Translates to: VRSMRGMTGVQENHSREIFLHSS*PLPAPT
Trigger: TGTAGGTGCAGGCAAAGGCAAAGAAGAATGGAGGAA...AATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGAC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 1 transcripts:
ENSMUST00000020939.16
CDS-3UTR CAA 90 bp GGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTAGACATTGGCACAGAGCACCAACTCGAACTTaGTATGCTGTTCCTGGCATT +
Preference number: 5 (lower is better)
Translates to: GMTGVQENHSREIRHWHRAPTRT*YAVPGI
Trigger: AATGCCAGGAACAGCATACAAAGTTCGAGTTGGTGC...TCTGTGCCAATGTCTAATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020939.16
CDS-3UTR CAA 90 bp GAGTCAGGGAATGCTAATTGTCTGAAGGCACTGCGTGTGTCTTGCCCTGCATTTTTTCTTACCACTGTATaGGCCAATAAAGGAGCCATC +
Preference number: 5 (lower is better)
Translates to: ESGNANCLKALRVSCPAFFLTTV*ANKGAI
Trigger: GATGGCTCCTTTATTGGCCAATACAGTGGTAAGAAA...AAATGCAGGGCAAGACACACGCAGTGCCTTCAGACAATTAGCATTCCCTGACTC
47% GC, longest homopolymer 6 nt, total homopolymer stretches 6 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000218062.2
CDS-3UTR CAA 90 bp AGAGGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTAGACATTGGCACAGTGATGGTTGGAGGTaGTACCAAGTCATGAAGGAG +
Preference number: 5 (lower is better)
Translates to: RGMTGVQENHSREIRHWHSDGWR*YQVMKE
Trigger: CTCCTTCATGACTTGGTACAACCTCCAACCATCACT...GTGCCAATGTCTAATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCCTCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220123.2
CDS GCA 90 bp TTTCACTCTGCATTCAAAGGACACCTTGCTCCCCCTCTGGACGACTaGATACTCAGGTTGTTTAATGATCCTGGTTGGATCTTTGATTTC +
Preference number: 5 (lower is better)
Translates to: FHSAFKGHLAPPLDD*ILRLFNDPGWIFDF
Trigger: GAAATCAAAGATCCAACCAGGATCATTAAACAACCTGAGTATGCAGTCGTCCAGAGGGGGAGCAAGGTGTCCTTTGAATGCAGAGTGAAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS GCA 90 bp TCCAGAAACTTCAGCCTGGTGGCGCCACAGCCCTGCATCATGCATTaGATCTTCATACTCAATGATGAATTTTGTAATGGGGCTATTGTT +
Preference number: 5 (lower is better)
Translates to: SRNFSLVAPQPCIMH*IFILNDEFCNGAIV
Trigger: AACAATAGCCCCATTACAAAATTCATCATTGAGTATGAAGATGCAATGCATGATGCAGGGCTGTGGCGCCACCAGGCTGAAGTTTCTGGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS GCA 90 bp TGTGGTCTGTGTTCCAGAAACTTCAGCCTGGTGGCGCCACAGCCCTaGATCATGCATTGCATCTTCATACTCAATGATGAATTTTGTAAT +
Preference number: 5 (lower is better)
Translates to: CGLCSRNFSLVAPQP*IMHCIFILNDEFCN
Trigger: ATTACAAAATTCATCATTGAGTATGAAGATGCAATGCATGATGCAGGGCTGTGGCGCCACCAGGCTGAAGTTTCTGGAACACAGACCACA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp TTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCTACCCGAGTCCAGGAAAAGCTaGGGGGAGGTTTCCCTTTGG +
Preference number: 5 (lower is better)
Translates to: FLLWSHNTHIPQKTFFLPESRKS*GEVSLW
Trigger: CCAAAGGGAAACCTCCCCCAAGCTTTTCCTGGACTC...GGGTAGAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp TATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCCGGACAACAATGTTATaGGAGACGGCAGCTCCACGC +
Preference number: 5 (lower is better)
Translates to: YHLTESCSCSGLIILIYRRTTML*ETAAPR
Trigger: GCGTGGAGCTGCCGTCTCCAATAACATTGTTGTCCG...GCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGACTCAGTCAAATGATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp TACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATTCCTCTTTGTGGCTTTCATaGCCCTCTGGAGTTAGAAAC +
Preference number: 5 (lower is better)
Translates to: YPYVRSMRGMTGVQENHSSLWLS*PSGVRN
Trigger: GTTTCTAACTCCAGAGGGCAATGAAAGCCACAAAGA...GGAATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp CCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCTTTGTAATGGGGCTATaGTTGTCGTCGCCTGGGGTC +
Preference number: 5 (lower is better)
Translates to: PQFILMYHLTESCSCSGLFVMGL*LSSPGV
Trigger: GACCCCAGGCGACGACAACAATAGCCCCATTACAAA...GAGACCAGAGCAAGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp TTCAACTTGACTTGTTTGGCTAGAAACCACAAAAGACAACAAAACCATCCTGTAGGGAGACAGCTTCAGTaGGGCTGTGGTCTGTGTTCC +
Preference number: 5 (lower is better)
Translates to: FNLTCLARNHKRQQNHPVGRQLQ*GCGLCS
Trigger: GGAACACAGACCACAGCCCAACTGAAGCTGTCTCCC...TACAGGATGGTTTTGTTGTCTTTTGTGGTTTCTAGCCAAACAAGTCAAGTTGAA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp CACTCTGAACAAAAACGTATGCACTTTGCACCCCAGTTCATATTAATGTATCATGGGAGACAGCTTCAGTaGGGCTGTGGTCTGTGTTCC +
Preference number: 5 (lower is better)
Translates to: HSEQKRMHFAPQFILMYHGRQLQ*GCGLCS
Trigger: GGAACACAGACCACAGCCCAACTGAAGCTGTCTCCC...ATGATACATTAATATGAACTGGGGTGCAAAGTGCATACGTTTTTGTTCAGAGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp TACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATTCCATGTATTTGGATACATaGGCCACAACCACAGACGTC +
Preference number: 5 (lower is better)
Translates to: YPYVRSMRGMTGVQENHSMYLDT*ATTTDV
Trigger: GACGTCTGTGGTTGTGGCCAATGTATCCAAATACAT...GGAATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp AGACAACAAAACCATCCTGTACACCCGACAATGACAGAGCTTTGGAGGCCTGATCCAGAAACAATGTATTaGGATACATTGGCCACAACC +
Preference number: 5 (lower is better)
Translates to: RQQNHPVHPTMTELWRPDPETMY*DTLATT
Trigger: GGTTGTGGCCAATGTATCCAAATACATTGTTTCTGG...ATCAGGCCTCCAAAGCTCTGTCATTGTCGGGTGTACAGGATGGTTTTGTTGTCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp GTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATTCCAGAGAGATTGTCCAGCGGGTCTTGTaGGCAGGAATTTTTAAATCT +
Preference number: 5 (lower is better)
Translates to: VRSMRGMTGVQENHSREIVQRVL*AGIFKS
Trigger: AGATTTAAAAATTCCTGCCAACAAGACCCGCTGGAC...AATCTCTCTGGAATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGAC
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp CACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTTGCCGGCTTGCCATTGCTTaGCCTGCACCTACATCAGGT +
Preference number: 5 (lower is better)
Translates to: HFAPQFILMYHLTESCSCRLAIA*PAPTSG
Trigger: ACCTGATGTAGGTGCAGGCAAAGCAATGGCAAGCCG...GCAAGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp CACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTTGCGGTCGCGATATCCACTaGCCGGCTTGCCATTGCTTT +
Preference number: 5 (lower is better)
Translates to: HFAPQFILMYHLTESCSCGRDIH*PACHCF
Trigger: AAAGCAATGGCAAGCCGGCAAGTGGATATCGCGACC...GCAAGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp CAGCGAGCATTAGTGGATGCAACTGTCATAAGTAACTCATGTAGCAAGTATATAGGTCGCGATATCCACTaGCCGGCTTGCCATTGCTTT +
Preference number: 5 (lower is better)
Translates to: QRALVDATVISNSCSKYIGRDIH*PACHCF
Trigger: AAAGCAATGGCAAGCCGGCAAGTGGATATCGCGACC...TATATACTTGCTACATGAGTTACTTATGACAGTTGCATCCACTAATGCTCGCTG
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp GTCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTGGGGGAGGTTTCCCTTaGGCCTCACACTGGATTACA +
Preference number: 5 (lower is better)
Translates to: VMFLLWSHNTHIPQKTFFGGGFP*ASHWIT
Trigger: TGTAATCCAGTGTGAGGCCAAAGGGAAACCTCCCCC...AAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp ATGCACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTGGGGGAGGTTTCCCTTaGGCCTCACACTGGATTACA +
Preference number: 5 (lower is better)
Translates to: MHFAPQFILMYHLTESCSGGGFP*ASHWIT
Trigger: TGTAATCCAGTGTGAGGCCAAAGGGAAACCTCCCCC...AGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTGCAT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp TCTTTCACTGAAGGCATTGATGACTTGAAAGGAACTTTTGTCTTTGTGCTTTGTCATTCAAAGGACACCTaGCTCCCCCTCTGGACGACT +
Preference number: 5 (lower is better)
Translates to: SFTEGIDDLKGTFVFVLCHSKDT*LPLWTT
Trigger: AGTCGTCCAGAGGGGGAGCAAGGTGTCCTTTGAATG...ACAAAGCACAAAGACAAAAGTTCCTTTCAAGTCATCAATGCCTTCAGTGAAAGA
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
CDS-3UTR CAA 90 bp CCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCTTGGGCAGCTCTCCATaGTCCTTCAGCCACATAATG +
Preference number: 5 (lower is better)
Translates to: PQFILMYHLTESCSCSGLLGSSP*SFSHIM
Trigger: CATTATGTGGCTGAAGGACAATGGAGAGCTGCCCAA...GAGACCAGAGCAAGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp CAATTTGCATACACGTTGCTGAATGCTGCGGAATTTGAAAGCTTGTCTAGGCAGATGTATTTGGATACATaGGCCACAACCACAGACGTC +
Preference number: 5 (lower is better)
Translates to: QFAYTLLNAAEFESLSRQMYLDT*ATTTDV
Trigger: GACGTCTGTGGTTGTGGCCAATGTATCCAAATACAT...CTGCCTAGACAAGCTTTCAAATTCCGCAGCATTCAGCAACGTGTATGCAAATTG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
CDS-3UTR CAA 90 bp CCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCTTCCAGGAGCCACCATaGGAAGGTCTTCTCCAGAAT +
Preference number: 5 (lower is better)
Translates to: PQFILMYHLTESCSCSGLFQEPP*EGLLQN
Trigger: ATTCTGGAGAAGACCTTCCAATGGTGGCTCCTGGAA...GAGACCAGAGCAAGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp TCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCTACCCAACCTATGAACCAGCCTaGGGTCGCGATATCCACTTG +
Preference number: 5 (lower is better)
Translates to: SCSGLIILIYRRKHSFYPTYEPA*GRDIHL
Trigger: CAAGTGGATATCGCGACCCAAGGCTGGTTCATAGGT...TGGGTAGAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp TTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCTACCCAAGGAGTTCATTGCGTaGACAGGAGAAGGGGCCTCT +
Preference number: 5 (lower is better)
Translates to: FLLWSHNTHIPQKTFFLPKEFIA*TGEGAS
Trigger: AGAGGCCCCTTCTCCTGTCAACGCAATGAACTCCTT...GGGTAGAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
CDS TCA 90 bp TTTAAATCTACCAGAGGGCCTAGCTCATGTGTGCTGTTAATTGGCTaGTATTGTAAGATGTACTCAGTCAGGATGCCATTTGGGTGGCTT +
Preference number: 5 (lower is better)
Translates to: FKSTRGPSSCVLLIG*YCKMYSVRMPFGWL
Trigger: AAGCCACCCAAATGGCATCCTGACTGAGTACATCTTACAATATCAGCCAATTAACAGCACACATGAGCTAGGCCCTCTGGTAGATTTAAA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS TCA 90 bp GCCCCACTGATGTCTGTGCATAGAAATAGAACTTGTACCGAGTGCTaGAATTTAAATTTTTCAAAGTCCAGCGGGTCTTGTTGGCAGGAA +
Preference number: 5 (lower is better)
Translates to: APLMSVHRNRTCTEC*NLNFSKSSGSCWQE
Trigger: TTCCTGCCAACAAGACCCGCTGGACTTTGAAAAATTTAAATTTCAGCACTCGGTACAAGTTCTATTTCTATGCACAGACATCAGTGGGGC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS GCA 90 bp CATTCAGAGCTTGAACTTTTATCAGGTATGGGACAAAGGTTGGTGTaGCAGAAACAATGTATTTGGATACATTGGCCACAACCACAGACG +
Preference number: 5 (lower is better)
Translates to: HSELELLSGMGQRLV*QKQCIWIHWPQPQT
Trigger: CGTCTGTGGTTGTGGCCAATGTATCCAAATACATTGTTTCTGGCACACCAACCTTTGTCCCATACCTGATAAAAGTTCAAGCTCTGAATG
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp TATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCAGTGATGGTTGGAGGTaGTACCAGATCGAGAGGAAC +
Preference number: 5 (lower is better)
Translates to: YHLTESCSCSGLIILIYRSDGWR*YQIERN
Trigger: GTTCCTCTCGATCTGGTACAACCTCCAACCATCACT...GCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGACTCAGTCAAATGATA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
CDS-3UTR CAA 90 bp ATGCACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTGGAAAGCACGAGGTTTaGAGGTGCCACGATCCAGTA +
Preference number: 5 (lower is better)
Translates to: MHFAPQFILMYHLTESCSGKHEV*RCHDPV
Trigger: TACTGGATCGTGGCACCTCAAAACCTCGTGCTTTCC...AGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTGCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp TTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCTACCCATTCTGGGTTTCGGGTaGCCATTAGCTCTGCAGATG +
Preference number: 5 (lower is better)
Translates to: FLLWSHNTHIPQKTFFLPILGFG*PLALQM
Trigger: CATCTGCAGAGCTAATGGCAACCCGAAACCCAGAAT...GGGTAGAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp AACTTGACTTGTTTGGCTAGAAACCACAAAAGACAACAAAACCATCCTGTACACATTCTGGGTTTCGGGTaGCCATTAGCTCTGCAGATG +
Preference number: 5 (lower is better)
Translates to: NLTCLARNHKRQQNHPVHILGFG*PLALQM
Trigger: CATCTGCAGAGCTAATGGCAACCCGAAACCCAGAAT...GTGTACAGGATGGTTTTGTTGTCTTTTGTGGTTTCTAGCCAAACAAGTCAAGTT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp TCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCTACCCAATTCTGGGTTTCGGGTaGCCATTAGCTCTGCAGATG +
Preference number: 5 (lower is better)
Translates to: SCSGLIILIYRRKHSFYPILGFG*PLALQM
Trigger: CATCTGCAGAGCTAATGGCAACCCGAAACCCAGAAT...TGGGTAGAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp GAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTGGGCAGCTCTCCATaGTCCTTCAGCCACATAATG +
Preference number: 5 (lower is better)
Translates to: ESCSCSGLIILIYRRKHSLGSSP*SFSHIM
Trigger: CATTATGTGGCTGAAGGACAATGGAGAGCTGCCCAA...AGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGACTC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp TTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCTACCCGAGAACCTTTCATCATaGGGCAGCTCTCCATTGTCC +
Preference number: 5 (lower is better)
Translates to: FLLWSHNTHIPQKTFFLPENLSS*GSSPLS
Trigger: GGACAATGGAGAGCTGCCCAATGATGAAAGGTTCTC...GGGTAGAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp CAGCGAGCATTAGTGGATGCAACTGTCATAAGTAACTCATGTAGCAAGTATATAGAGAACCTTTCATCATaGGGCAGCTCTCCATTGTCC +
Preference number: 5 (lower is better)
Translates to: QRALVDATVISNSCSKYIENLSS*GSSPLS
Trigger: GGACAATGGAGAGCTGCCCAATGATGAAAGGTTCTC...TATATACTTGCTACATGAGTTACTTATGACAGTTGCATCCACTAATGCTCGCTG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp ATGTATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACGTAATGGGGCTATTGTaGTCGTCGCCTGGGGTCCAT +
Preference number: 5 (lower is better)
Translates to: MYHLTESCSCSGLIILIYVMGLL*SSPGVH
Trigger: ATGGACCCCAGGCGACGACAACAATAGCCCCATTAC...GTATATGAGTATTATGAGACCAGAGCAAGAACATGACTCAGTCAAATGATACAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp CCCAGTTTCAGTTCGAATTATCTCTGCCTTGGAAAAGTTCCTTTCCAACAACAGGTCCAGCGGGTCTTGTaGGCAGGAATTTTTAAATCT +
Preference number: 5 (lower is better)
Translates to: PSFSSNYLCLGKVPFQQQVQRVL*AGIFKS
Trigger: AGATTTAAAAATTCCTGCCAACAAGACCCGCTGGAC...CTGTTGTTGGAAAGGAACTTTTCCAAGGCAGAGATAATTCGAACTGAAACTGGG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp CACCAGCTAGACATAGTCACGAGTTTAACAACAATGTCCACAGAGACATTGAAGGTCCAGCGGGTCTTGTaGGCAGGAATTTTTAAATCT +
Preference number: 5 (lower is better)
Translates to: HQLDIVTSLTTMSTETLKVQRVL*AGIFKS
Trigger: AGATTTAAAAATTCCTGCCAACAAGACCCGCTGGAC...CTTCAATGTCTCTGTGGACATTGTTGTTAAACTCGTGACTATGTCTAGCTGGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp TCTTTCTACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACAAAGTCCAGCGGGTCTaGTTGGCAGGAATTTTTAAA +
Preference number: 5 (lower is better)
Translates to: SFYPYVRSMRGMTGVQENKVQRV*LAGIFK
Trigger: TTTAAAAATTCCTGCCAACAAGACCCGCTGGACTTT...GTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTAGAAAGA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp TCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCACCTATGAACCAGCCTaGGGTCGCGATATCCACTTG +
Preference number: 5 (lower is better)
Translates to: SCSCSGLIILIYRRKHSFTYEPA*GRDIHL
Trigger: CAAGTGGATATCGCGACCCAAGGCTGGTTCATAGGT...GAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp CACTCTGAACAAAAACGTATGCACTTTGCACCCCAGTTCATATTAATGTATCATACCTATGAACCAGCCTaGGGTCGCGATATCCACTTG +
Preference number: 5 (lower is better)
Translates to: HSEQKRMHFAPQFILMYHTYEPA*GRDIHL
Trigger: CAAGTGGATATCGCGACCCAAGGCTGGTTCATAGGT...ATGATACATTAATATGAACTGGGGTGCAAAGTGCATACGTTTTTGTTCAGAGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp GATGCAACTGTCATAAGTAACTCATGTAGCAAGTATATACTGTACACACTGTTCACCTATGAACCAGCCTaGGGTCGCGATATCCACTTG +
Preference number: 5 (lower is better)
Translates to: DATVISNSCSKYILYTLFTYEPA*GRDIHL
Trigger: CAAGTGGATATCGCGACCCAAGGCTGGTTCATAGGT...GAACAGTGTGTACAGTATATACTTGCTACATGAGTTACTTATGACAGTTGCATC
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp TTCTACCCATATGTCCGTAGTATGAGAGGGATGACAGGTGTTCAGGAAAACCATTTTCTTACCACTGTATaGGCCAATAAAGGAGCCATC +
Preference number: 5 (lower is better)
Translates to: FYPYVRSMRGMTGVQENHFLTTV*ANKGAI
Trigger: GATGGCTCCTTTATTGGCCAATACAGTGGTAAGAAA...ATGGTTTTCCTGAACACCTGTCATCCCTCTCATACTACGGACATATGGGTAGAA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
CDS-3UTR CAA 90 bp ATGCACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTAAGGAGTTCATTGCGTaGACAGGAGAAGGGGCCTCT +
Preference number: 5 (lower is better)
Translates to: MHFAPQFILMYHLTESCSKEFIA*TGEGAS
Trigger: AGAGGCCCCTTCTCCTGTCAACGCAATGAACTCCTT...AGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTGCAT
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
CDS-3UTR CAA 90 bp ATGTATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACTATCCACTTGCCGGCTaGCCATTGCTTTGCCTGCAC +
Preference number: 5 (lower is better)
Translates to: MYHLTESCSCSGLIILIYYPLAG*PLLCLH
Trigger: GTGCAGGCAAAGCAATGGCAAGCCGGCAAGTGGATA...GTATATGAGTATTATGAGACCAGAGCAAGAACATGACTCAGTCAAATGATACAT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS CCA 90 bp CACATCATTCAGAGCTTGAACTTTTATCAGGTATGGGACAAAGGTTaGTGTGCCAGAAACAATGTATTTGGATACATTGGCCACAACCAC +
Preference number: 5 (lower is better)
Translates to: HIIQSLNFYQVWDKG*CARNNVFGYIGHNH
Trigger: GTGGTTGTGGCCAATGTATCCAAATACATTGTTTCTGGCACACCAACCTTTGTCCCATACCTGATAAAAGTTCAAGCTCTGAATGATGTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp CCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCCTTCTGCTGGATGGTTaGAGTGTGATTAAATCTGGC +
Preference number: 5 (lower is better)
Translates to: PQFILMYHLTESCSCSGLLLLDG*SVIKSG
Trigger: GCCAGATTTAATCACACTCAAACCATCCAGCAGAAG...GAGACCAGAGCAAGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp CCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCTCTTTGTGGCTTTCATaGCCCTCTGGAGTTAGAAAC +
Preference number: 5 (lower is better)
Translates to: PQFILMYHLTESCSCSGLSLWLS*PSGVRN
Trigger: GTTTCTAACTCCAGAGGGCAATGAAAGCCACAAAGA...GAGACCAGAGCAAGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp GGCACAGAGCTTAAAGACTTAAACAAAGGAGTTCATTGCGTTGACAGGAGAAGGCACATCATTCAGAGCTaGAACTTTTATCAGGTATGG +
Preference number: 5 (lower is better)
Translates to: GTELKDLNKGVHCVDRRRHIIQS*NFYQVW
Trigger: CCATACCTGATAAAAGTTCAAGCTCTGAATGATGTG...CCTTCTCCTGTCAACGCAATGAACTCCTTTGTTTAAGTCTTTAAGCTCTGTGCC
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000220123.2
CDS CCA 90 bp TGGTGCAAACCCCACATCATTCAGAGCTTGAACTTTTATCAGGTATaGGACAAAGGTTGGTGTGCCAGAAACAATGTATTTGGATACATT +
Preference number: 5 (lower is better)
Translates to: WCKPHIIQSLNFYQV*DKGWCARNNVFGYI
Trigger: AATGTATCCAAATACATTGTTTCTGGCACACCAACCTTTGTCCCATACCTGATAAAAGTTCAAGCTCTGAATGATGTGGGGTTTGCACCA
41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp TCAAAAAGACTAACACCAGCTAGACATAGTCACGAGTTTAACAACAATGTCCACCTTCTGCTGGATGGTTaGAGTGTGATTAAATCTGGC +
Preference number: 5 (lower is better)
Translates to: SKRLTPARHSHEFNNNVHLLLDG*SVIKSG
Trigger: GCCAGATTTAATCACACTCAAACCATCCAGCAGAAG...GTGGACATTGTTGTTAAACTCGTGACTATGTCTAGCTGGTGTTAGTCTTTTTGA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp TTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCTACCCGTCCAGCGGGTCTTGTaGGCAGGAATTTTTAAATCT +
Preference number: 5 (lower is better)
Translates to: FLLWSHNTHIPQKTFFLPVQRVL*AGIFKS
Trigger: AGATTTAAAAATTCCTGCCAACAAGACCCGCTGGAC...GGGTAGAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAA
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp ATGCACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTCATTCTTCTTTGCCTTaGCCTGCACCTACATCAGGT +
Preference number: 5 (lower is better)
Translates to: MHFAPQFILMYHLTESCSHSSLP*PAPTSG
Trigger: ACCTGATGTAGGTGCAGGCAAAGGCAAAGAAGAATG...AGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTGCAT
41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000020939.16
CDS-3UTR CAA 90 bp ATGCACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTTCTTTGTGGCTTTCATaGCCCTCTGGAGTTAGAAAC +
Preference number: 5 (lower is better)
Translates to: MHFAPQFILMYHLTESCSSLWLS*PSGVRN
Trigger: GTTTCTAACTCCAGAGGGCAATGAAAGCCACAAAGA...AGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTGCAT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp CAGCGAGCATTAGTGGATGCAACTGTCATAAGTAACTCATGTAGCAAGTATATACGAGAGCAATTTCTATaGGGACTCCATTTGTTAACC +
Preference number: 5 (lower is better)
Translates to: QRALVDATVISNSCSKYIREQFL*GLHLLT
Trigger: GGTTAACAAATGGAGTCCCAATAGAAATTGCTCTCG...TATATACTTGCTACATGAGTTACTTATGACAGTTGCATCCACTAATGCTCGCTG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp CCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCAGTGAACTTCATTCTTaGCCATCCCTAGTTTATTCC +
Preference number: 5 (lower is better)
Translates to: PQFILMYHLTESCSCSGLSELHS*PSLVYS
Trigger: GGAATAAACTAGGGATGGCAAAGAATGAAGTTCACT...GAGACCAGAGCAAGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp TTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTCTACCCCCAGAAACAATGTATTaGGATACATTGGCCACAACC +
Preference number: 5 (lower is better)
Translates to: FLLWSHNTHIPQKTFFLPPETMY*DTLATT
Trigger: GGTTGTGGCCAATGTATCCAAATACATTGTTTCTGG...GGGTAGAAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAA
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp CCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCCACATCATTCAGAGCTaGAACTTTTATCAGGTATGG +
Preference number: 5 (lower is better)
Translates to: PQFILMYHLTESCSCSGLHIIQS*NFYQVW
Trigger: CCATACCTGATAAAAGTTCAAGCTCTGAATGATGTG...GAGACCAGAGCAAGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp AACTTGACTTGTTTGGCTAGAAACCACAAAAGACAACAAAACCATCCTGTACACTTTCTTACCACTGTATaGGCCAATAAAGGAGCCATC +
Preference number: 5 (lower is better)
Translates to: NLTCLARNHKRQQNHPVHFLTTV*ANKGAI
Trigger: GATGGCTCCTTTATTGGCCAATACAGTGGTAAGAAA...GTGTACAGGATGGTTTTGTTGTCTTTTGTGGTTTCTAGCCAAACAAGTCAAGTT
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000218062.2
CDS-3UTR CAA 90 bp GAACAAAAACGTATGCACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTCTTCTGCTGGATGGTTaGAGTGTGATTAAATCTGGC +
Preference number: 5 (lower is better)
Translates to: EQKRMHFAPQFILMYHLTLLLDG*SVIKSG
Trigger: GCCAGATTTAATCACACTCAAACCATCCAGCAGAAG...AGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTGCATACGTTTTTGTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp ATGCACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTGAGTCATGTTCTCGAGAGCAATTTCTATaGGGACTCCATTTGTTAACC +
Preference number: 5 (lower is better)
Translates to: MHFAPQFILMYHLTESCSREQFL*GLHLLT
Trigger: GGTTAACAAATGGAGTCCCAATAGAAATTGCTCTCG...AGAACATGACTCAGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTGCAT
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp GAACAAAAACGTATGCACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTATGTATTTGGATACATaGGCCACAACCACAGACGTC +
Preference number: 5 (lower is better)
Translates to: EQKRMHFAPQFILMYHLTMYLDT*ATTTDV
Trigger: GACGTCTGTGGTTGTGGCCAATGTATCCAAATACAT...AGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTGCATACGTTTTTGTTC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp GTCATGTTCTTGCTCTGGTCTCATAATACTCATATACCGCAGAAAACATTCTTTAAAGTCCAGCGGGTCTaGTTGGCAGGAATTTTTAAA +
Preference number: 5 (lower is better)
Translates to: VMFLLWSHNTHIPQKTFFKVQRV*LAGIFK
Trigger: TTTAAAAATTCCTGCCAACAAGACCCGCTGGACTTT...AAAGAATGTTTTCTGCGGTATATGAGTATTATGAGACCAGAGCAAGAACATGAC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp TTCATTTGGGGAATCACTTTAAAACAAGCTTTACCTGTACACATCAAAGGTGTCAAAGTCCAGCGGGTCTaGTTGGCAGGAATTTTTAAA +
Preference number: 5 (lower is better)
Translates to: FIWGITLKQALPVHIKGVKVQRV*LAGIFK
Trigger: TTTAAAAATTCCTGCCAACAAGACCCGCTGGACTTT...GACACCTTTGATGTGTACAGGTAAAGCTTGTTTTAAAGTGATTCCCCAAATGAA
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
CDS-3UTR CAA 90 bp GATGCAACTGTCATAAGTAACTCATGTAGCAAGTATATACTGTACACACTGTTCAAAGTCCAGCGGGTCTaGTTGGCAGGAATTTTTAAA +
Preference number: 5 (lower is better)
Translates to: DATVISNSCSKYILYTLFKVQRV*LAGIFK
Trigger: TTTAAAAATTCCTGCCAACAAGACCCGCTGGACTTT...GAACAGTGTGTACAGTATATACTTGCTACATGAGTTACTTATGACAGTTGCATC
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp CACTCTGAACAAAAACGTATGCACTTTGCACCCCAGTTCATATTAATGTATCATTTTCTTACCACTGTATaGGCCAATAAAGGAGCCATC +
Preference number: 5 (lower is better)
Translates to: HSEQKRMHFAPQFILMYHFLTTV*ANKGAI
Trigger: GATGGCTCCTTTATTGGCCAATACAGTGGTAAGAAA...ATGATACATTAATATGAACTGGGGTGCAAAGTGCATACGTTTTTGTTCAGAGTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218062.2
ENSMUST00000220082.2
CDS-3UTR CAA 90 bp GAACAAAAACGTATGCACTTTGCACCCCAGTTCATATTAATGTATCATTTGACTCGAGAGCAATTTCTATaGGGACTCCATTTGTTAACC +
Preference number: 5 (lower is better)
Translates to: EQKRMHFAPQFILMYHLTREQFL*GLHLLT
Trigger: GGTTAACAAATGGAGTCCCAATAGAAATTGCTCTCG...AGTCAAATGATACATTAATATGAACTGGGGTGCAAAGTGCATACGTTTTTGTTC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp AATAGTCTCTCAAAAAGACTAACACCAGCTAGACATAGTCACGAGTTTAACAACAGTGAACTTCATTCTTaGCCATCCCTAGTTTATTCC +
Preference number: 5 (lower is better)
Translates to: NSLSKRLTPARHSHEFNNSELHS*PSLVYS
Trigger: GGAATAAACTAGGGATGGCAAAGAATGAAGTTCACT...GTTGTTAAACTCGTGACTATGTCTAGCTGGTGTTAGTCTTTTTGAGAGACTATT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS-3UTR CAA 90 bp TTCATTTGGGGAATCACTTTAAAACAAGCTTTACCTGTACACATCAAAGGTGTCCACATCATTCAGAGCTaGAACTTTTATCAGGTATGG +
Preference number: 5 (lower is better)
Translates to: FIWGITLKQALPVHIKGVHIIQS*NFYQVW
Trigger: CCATACCTGATAAAAGTTCAAGCTCTGAATGATGTG...GACACCTTTGATGTGTACAGGTAAAGCTTGTTTTAAAGTGATTCCCCAAATGAA
38% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
CDS-3UTR CAA 90 bp ATGTATCATTTGACTGAGTCATGTTCTTGCTCTGGTCTCATAATACTCATATACAGTGAACTTCATTCTTaGCCATCCCTAGTTTATTCC +
Preference number: 5 (lower is better)
Translates to: MYHLTESCSCSGLIILIYSELHS*PSLVYS
Trigger: GGAATAAACTAGGGATGGCAAAGAATGAAGTTCACT...GTATATGAGTATTATGAGACCAGAGCAAGAACATGACTCAGTCAAATGATACAT
37% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CCA 72 bp TCCCTCCGGTGTATGGAAGCCTCTGTCCGTGCTGGCTaGGCCCTCCCCTTTCCCGTTGACCACTCGGACGTT +
Preference number: 6 (lower is better)
Translates to: SLRCMEASVRAG*ALPFPVDHSDV
Trigger: AACGTCCGAGTGGTCAACGGGAAAGGGGAGGGCCCAGCCAGCACGGACAGAGGCTTCCATACACCGGAGGGA
64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS GCA 72 bp TGTCCTCGGACACTCTTGGGAGGAACTGGGTCCCAGTaGACCTCTGCCAGCGTACTGTTCACCACGCTGACG +
Preference number: 6 (lower is better)
Translates to: CPRTLLGGTGSQ*TSASVLFTTLT
Trigger: CGTCAGCGTGGTGAACAGTACGCTGGCAGAGGTGCACTGGGACCCAGTTCCTCCCAAGAGTGTCCGAGGACA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CCA 72 bp GCACAGCGCTGGCCGAAGCACTGTCCAGCGTTGTGTTaGCCGTACACGTGTAGGTTCCGCCATCGTCATCCT +
Preference number: 6 (lower is better)
Translates to: AQRWPKHCPALC*PYTCRFRHRHP
Trigger: AGGATGACGATGGCGGAACCTACACGTGTACGGCCAACACAACGCTGGACAGTGCTTCGGCCAGCGCTGTGC
61% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CCA 72 bp GGGAGGATTCGGGACATCGTAAATGGGGGCTGGAGTTaGAGTAGGAGCGACAACCCTGAGCACAGCGCTGGC +
Preference number: 6 (lower is better)
Translates to: GRIRDIVNGGWS*SRSDNPEHSAG
Trigger: GCCAGCGCTGTGCTCAGGGTTGTCGCTCCTACTCCAACTCCAGCCCCCATTTACGATGTCCCGAATCCTCCC
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020939.16
ENSMUST00000220123.2
CDS TCA 72 bp CCCAGTGCACCTCTGCCAGCGTACTGTTCACCACGCTaGCGCGAACATTTCCAGGAGCCACCATTGGAAGGT +
Preference number: 6 (lower is better)
Translates to: PSAPLPAYCSPR*REHFQEPPLEG
Trigger: ACCTTCCAATGGTGGCTCCTGGAAATGTTCGCGTCAGCGTGGTGAACAGTACGCTGGCAGAGGTGCACTGGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS GCA 72 bp GACACTCTTGGGAGGAACTGGGTCCCAGTGCACCTCTaGCAGCGTACTGTTCACCACGCTGACGCGAACATT +
Preference number: 6 (lower is better)
Translates to: DTLGRNWVPVHL*QRTVHHADANI
Trigger: AATGTTCGCGTCAGCGTGGTGAACAGTACGCTGGCAGAGGTGCACTGGGACCCAGTTCCTCCCAAGAGTGTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS GCA 72 bp GAACCAGCCTTGGGTCGCGATATCCACTTGCCGGCTTaGCATTGCTTTGCCTGCACCTACATCAGGTGGAGG +
Preference number: 6 (lower is better)
Translates to: EPALGRDIHLPA*HCFACTYIRWR
Trigger: CCTCCACCTGATGTAGGTGCAGGCAAAGCAATGGCAAGCCGGCAAGTGGATATCGCGACCCAAGGCTGGTTC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS CCA 72 bp ACCAGATCGAGAGGAACATCCAGCGCGCTGATCATCTaGCACAGGAAGAGAATCAGGGGCACTCCGCCTGCA +
Preference number: 6 (lower is better)
Translates to: TRSRGTSSALII*HRKRIRGTPPA
Trigger: TGCAGGCGGAGTGCCCCTGATTCTCTTCCTGTGCCAGATGATCAGCGCGCTGGATGTTCCTCTCGATCTGGT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000218540.2
ENSMUST00000220126.2
CDS CCA 72 bp AAATCCGGTAGCCTTGTAAGTGTCCTCGGACACTCTTaGGAGGAACTGGGTCCCAGTGCACCTCTGCCAGCG +
Preference number: 6 (lower is better)
Translates to: KSGSLVSVLGHS*EELGPSAPLPA
Trigger: CGCTGGCAGAGGTGCACTGGGACCCAGTTCCTCCCAAGAGTGTCCGAGGACACTTACAAGGCTACCGGATTT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CCA 72 bp GTTGACCACTCGGACGTTGAGGGCATAGTGACTGTATaGCTGCAGCCCTGGCAGCATGCCGTGAGTCTTGGT +
Preference number: 6 (lower is better)
Translates to: VDHSDVEGIVTV*LQPWQHAVSLG
Trigger: ACCAAGACTCACGGCATGCTGCCAGGGCTGCAGCCATACAGTCACTATGCCCTCAACGTCCGAGTGGTCAAC
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CCA 72 bp ACAACCACAGACGTCCACTCATCGTCACCATCTTTCTaGCGCCAGCTCACTTTGTACTGGAGGCCAGGCCCA +
Preference number: 6 (lower is better)
Translates to: TTTDVHSSSPSF*RQLTLYWRPGP
Trigger: TGGGCCTGGCCTCCAGTACAAAGTGAGCTGGCGCCAGAAAGATGGTGACGATGAGTGGACGTCTGTGGTTGT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS GCA 72 bp GCCTTGGGTCGCGATATCCACTTGCCGGCTTGCCATTaGCTTCTTACCTTCGTCCACAGTCGTTATCGCTTC +
Preference number: 6 (lower is better)
Translates to: ALGRDIHLPACH*LLTFVHSRYRF
Trigger: GAAGCGATAACGACTGTGGACGAAGGTAAGAAGGCAATGGCAAGCCGGCAAGTGGATATCGCGACCCAAGGC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
CDS CCA 72 bp ATCAAAGGGAGGATTCGGGACATCGTAAATGGGGGCTaGAGTTGGAGTAGGAGCGACAACCCTGAGCACAGC +
Preference number: 6 (lower is better)
Translates to: IKGRIRDIVNGG*SWSRSDNPEHS
Trigger: GCTGTGCTCAGGGTTGTCGCTCCTACTCCAACTCCAGCCCCCATTTACGATGTCCCGAATCCTCCCTTTGAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000020939.16
ENSMUST00000220123.2
CDS CCA 72 bp TGGGCTGTGGTCTGTGTTCCAGAAACTTCAGCCTGGTaGCGCCACAGCCCTGCATCATGCATTGCATCTTCA +
Preference number: 6 (lower is better)
Translates to: WAVVCVPETSAW*RHSPASCIASS
Trigger: TGAAGATGCAATGCATGATGCAGGGCTGTGGCGCCACCAGGCTGAAGTTTCTGGAACACAGACCACAGCCCA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CCA 72 bp AGTTGGGCTGTGGTCTGTGTTCCAGAAACTTCAGCCTaGTGGCGCCACAGCCCTGCATCATGCATTGCATCT +
Preference number: 6 (lower is better)
Translates to: SWAVVCVPETSA*WRHSPASCIAS
Trigger: AGATGCAATGCATGATGCAGGGCTGTGGCGCCACCAGGCTGAAGTTTCTGGAACACAGACCACAGCCCAACT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CCA 72 bp CCGGCTTGCCATTGCTTTGCCTGCACCTACATCAGGTaGAGGAATACCAGCTTCGTCCACAGTCGTTATCGC +
Preference number: 6 (lower is better)
Translates to: PACHCFACTYIR*RNTSFVHSRYR
Trigger: GCGATAACGACTGTGGACGAAGCTGGTATTCCTCCACCTGATGTAGGTGCAGGCAAAGCAATGGCAAGCCGG
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS TCA 72 bp CTGGCAGCATGCCGTGAGTCTTGGTGCCCTGGAAGGTaGGGATCTTCTTCTCAATGTGGCGCCTGTTTCTTT +
Preference number: 6 (lower is better)
Translates to: LAACRESWCPGR*GSSSQCGACFF
Trigger: AAAGAAACAGGCGCCACATTGAGAAGAAGATCCTCACCTTCCAGGGCACCAAGACTCACGGCATGCTGCCAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS TCA 72 bp TACCAGCTTCGTCCACAGTCGTTATCGCTTCCTCTGTaGTCTGACTGCCTGGCCCCACTGATGTCTGTGCAT +
Preference number: 6 (lower is better)
Translates to: YQLRPQSLSLPL*SDCLAPLMSVH
Trigger: ATGCACAGACATCAGTGGGGCCAGGCAGTCAGATCACAGAGGAAGCGATAACGACTGTGGACGAAGCTGGTA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS CAA 72 bp AGCCTTGGGTCGCGATATCCACTTGCCGGCTTGCCATaGCCTTCTTACCTTCGTCCACAGTCGTTATCGCTT +
Preference number: 6 (lower is better)
Translates to: SLGSRYPLAGLP*PSYLRPQSLSL
Trigger: AAGCGATAACGACTGTGGACGAAGGTAAGAAGGCAATGGCAAGCCGGCAAGTGGATATCGCGACCCAAGGCT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
CDS TCA 72 bp GGCTCTGTCCCTAGTCCTTCCACAGCCATGGGATTCTaGTCTGGTTCTGCGGCTTTTGTAAGATACTGCTCG +
Preference number: 6 (lower is better)
Translates to: GSVPSPSTAMGF*SGSAAFVRYCS
Trigger: CGAGCAGTATCTTACAAAAGCCGCAGAACCAGATCAGAATCCCATGGCTGTGGAAGGACTAGGGACAGAGCC
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS TCA 72 bp TCTTACCTTCGTCCACAGTCGTTATCGCTTCCTCTGTaGTCTGACTGCCTGGCCCCACTGATGTCTGTGCAT +
Preference number: 6 (lower is better)
Translates to: SYLRPQSLSLPL*SDCLAPLMSVH
Trigger: ATGCACAGACATCAGTGGGGCCAGGCAGTCAGATCACAGAGGAAGCGATAACGACTGTGGACGAAGGTAAGA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000110748.4
CDS GCA 72 bp TGCCTCGCTCGGCATACTTCTCCCAATGCTGTTCTCTaGCATGACACGGAAGGAGTAGTTCACATAGGGAGA +
Preference number: 6 (lower is better)
Translates to: CLARHTSPNAVL*HDTEGVVHIGR
Trigger: TCTCCCTATGTGAACTACTCCTTCCGTGTCATGGCAGAGAACAGCATTGGGAGAAGTATGCCGAGCGAGGCA
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CAA 90 bp TTTCTGGCGCCAGCTCACTTTGTACTGGAGGCCAGGCCCATTCGATaGAAAACCATTCAGGGGCTTCCATGTAATCACCAAGTTGTCCGG +
Preference number: 6 (lower is better)
Translates to: FLAPAHFVLEARPIR*KTIQGLPCNHQVVR
Trigger: CCGGACAACTTGGTGATTACATGGAAGCCCCTGAATGGTTTTCAATCGAATGGGCCTGGCCTCCAGTACAAAGTGAGCTGGCGCCAGAAA
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS GCA 72 bp ATCTGGTTCTGCGGCTTTTGTAAGATACTGCTCGGATaGCTCGCTCGGCATACTTCTCCCAATGCTGTTCTC +
Preference number: 6 (lower is better)
Translates to: IWFCGFCKILLG*LARHTSPNAVL
Trigger: GAGAACAGCATTGGGAGAAGTATGCCGAGCGAGGCATCCGAGCAGTATCTTACAAAAGCCGCAGAACCAGAT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CCA 72 bp TTGGTGCCCTGGAAGGTGAGGATCTTCTTCTCAATGTaGCGCCTGTTTCTTTTAGAGGAGCTCTGGGTCTTC +
Preference number: 6 (lower is better)
Translates to: LVPWKVRIFFSM*RLFLLEELWVF
Trigger: GAAGACCCAGAGCTCCTCTAAAAGAAACAGGCGCCACATTGAGAAGAAGATCCTCACCTTCCAGGGCACCAA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CCA 72 bp CCATTCTTCTTTGCCTTTGCCTGCACCTACATCAGGTaGAGGAATACCAGCTTCGTCCACAGTCGTTATCGC +
Preference number: 6 (lower is better)
Translates to: PFFFAFACTYIR*RNTSFVHSRYR
Trigger: GCGATAACGACTGTGGACGAAGCTGGTATTCCTCCACCTGATGTAGGTGCAGGCAAAGGCAAAGAAGAATGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000020939.16
CDS CAA 72 bp ACGGAAGGAGTAGTTCACATAGGGAGACAGCTTCAGTaGGGCTGTGGTCTGTGTTCCAGAAACTTCAGCCTG +
Preference number: 6 (lower is better)
Translates to: TEGVVHIGRQLQ*GCGLCSRNFSL
Trigger: CAGGCTGAAGTTTCTGGAACACAGACCACAGCCCAACTGAAGCTGTCTCCCTATGTGAACTACTCCTTCCGT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS TCA 72 bp CAGCTCACTTTGTACTGGAGGCCAGGCCCATTCGATTaGAAACCATTCAGGGGCTTCCATGTAATCACCAAG +
Preference number: 6 (lower is better)
Translates to: QLTLYWRPGPFD*KPFRGFHVITK
Trigger: CTTGGTGATTACATGGAAGCCCCTGAATGGTTTTCAATCGAATGGGCCTGGCCTCCAGTACAAAGTGAGCTG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS GCA 72 bp GCATTCAAAGGACACCTTGCTCCCCCTCTGGACGACTaGATACTCAGGTTGTTTAATGATCCTGGTTGGATC +
Preference number: 6 (lower is better)
Translates to: AFKGHLAPPLDD*ILRLFNDPGWI
Trigger: GATCCAACCAGGATCATTAAACAACCTGAGTATGCAGTCGTCCAGAGGGGGAGCAAGGTGTCCTTTGAATGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CCA 72 bp CACTGTATTCTCCAAACGTCCCATCATCTTCCTTCATaGGCTGGATTTCAGGGTCTGCATGAGCATCCTCCT +
Preference number: 6 (lower is better)
Translates to: HCILQTSHHLPS*AGFQGLHEHPP
Trigger: AGGAGGATGCTCATGCAGACCCTGAAATCCAGCCCATGAAGGAAGATGATGGGACGTTTGGAGAATACAGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220082.2
CDS CCA 72 bp GTCTGTATTCTCCAAACGTCCCATCATCTTCCTTCATaGGCTGGATTTCAGGGTCTGCATGAGCATCCTCCT +
Preference number: 6 (lower is better)
Translates to: VCILQTSHHLPS*AGFQGLHEHPP
Trigger: AGGAGGATGCTCATGCAGACCCTGAAATCCAGCCCATGAAGGAAGATGATGGGACGTTTGGAGAATACAGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000220123.2
CDS CAA 72 bp CCAGCTCACTTTGTACTGGAGGCCAGGCCCATTCGATaGAAAACCATTCAGGGGCTTCCATGTAATCACCAA +
Preference number: 6 (lower is better)
Translates to: PAHFVLEARPIR*KTIQGLPCNHQ
Trigger: TTGGTGATTACATGGAAGCCCCTGAATGGTTTTCAATCGAATGGGCCTGGCCTCCAGTACAAAGTGAGCTGG
50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CAA 90 bp CATGACTGCAGCTGGCTCTGGTGCAAACCCCACATCATTCAGAGCTaGAACTTTTATCAGGTATGGGACAAAGGTTGGTGTGCCAGAAAC +
Preference number: 6 (lower is better)
Translates to: HDCSWLWCKPHIIQS*NFYQVWDKGWCARN
Trigger: GTTTCTGGCACACCAACCTTTGTCCCATACCTGATAAAAGTTCAAGCTCTGAATGATGTGGGGTTTGCACCAGAGCCAGCTGCAGTCATG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS TCA 72 bp AGGCCTGTTTGCAATGACCTGGTACAGTGTGTTTGCTaGTGTGAGAATCCGAGGTGGTTCAGCGAGAACATT +
Preference number: 6 (lower is better)
Translates to: RPVCNDLVQCVC*CENPRWFSENI
Trigger: AATGTTCTCGCTGAACCACCTCGGATTCTCACATCAGCAAACACACTGTACCAGGTCATTGCAAACAGGCCT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS TCA 72 bp GCTGGCTCTGGTGCAAACCCCACATCATTCAGAGCTTaGACTTTTATCAGGTATGGGACAAAGGTTGGTGTG +
Preference number: 6 (lower is better)
Translates to: AGSGANPTSFRA*TFIRYGTKVGV
Trigger: CACACCAACCTTTGTCCCATACCTGATAAAAGTTCAAGCTCTGAATGATGTGGGGTTTGCACCAGAGCCAGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS TCA 72 bp TATCGCTTCCTCTGTGATCTGACTGCCTGGCCCCACTaGTGTCTGTGCATAGAAATAGAACTTGTACCGAGT +
Preference number: 6 (lower is better)
Translates to: YRFLCDLTAWPH*CLCIEIELVPS
Trigger: ACTCGGTACAAGTTCTATTTCTATGCACAGACATCAGTGGGGCCAGGCAGTCAGATCACAGAGGAAGCGATA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS GCA 72 bp TGTTCCAGAAACTTCAGCCTGGTGGCGCCACAGCCCTaGATCATGCATTGCATCTTCATACTCAATGATGAA +
Preference number: 6 (lower is better)
Translates to: CSRNFSLVAPQP*IMHCIFILNDE
Trigger: TTCATCATTGAGTATGAAGATGCAATGCATGATGCAGGGCTGTGGCGCCACCAGGCTGAAGTTTCTGGAACA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CCA 72 bp TTCACTCTGCATTCAAAGGACACCTTGCTCCCCCTCTaGACGACTGCATACTCAGGTTGTTTAATGATCCTG +
Preference number: 6 (lower is better)
Translates to: FTLHSKDTLLPL*TTAYSGCLMIL
Trigger: CAGGATCATTAAACAACCTGAGTATGCAGTCGTCCAGAGGGGGAGCAAGGTGTCCTTTGAATGCAGAGTGAA
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CAA 72 bp TCAGTGGAGAACCTTTCATCATTGGGCAGCTCTCCATaGTCCTTCAGCCACATAATGGTGGGGATTAAGGTG +
Preference number: 6 (lower is better)
Translates to: SVENLSSLGSSP*SFSHIMVGIKV
Trigger: CACCTTAATCCCCACCATTATGTGGCTGAAGGACAATGGAGAGCTGCCCAATGATGAAAGGTTCTCCACTGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CAA 72 bp ACAAAACCAGAGTCCCCCTCAGCACCAACTCGAACTTaGTATGCTGTTCCTGGCATTAGACCCTTTAACCCA +
Preference number: 6 (lower is better)
Translates to: TKPESPSAPTRT*YAVPGIRPFNP
Trigger: TGGGTTAAAGGGTCTAATGCCAGGAACAGCATACAAAGTTCGAGTTGGTGCTGAGGGGGACTCTGGTTTTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020939.16
CDS CAA 90 bp GGGATTAAGGTGTGGTCATGTTTCACTCTGCATTCAAAGGACACCTaGCTCCCCCTCTGGACGACTGCATACTCAGGTTGTTTAATGATC +
Preference number: 6 (lower is better)
Translates to: GIKVWSCFTLHSKDT*LPLWTTAYSGCLMI
Trigger: GATCATTAAACAACCTGAGTATGCAGTCGTCCAGAGGGGGAGCAAGGTGTCCTTTGAATGCAGAGTGAAACATGACCACACCTTAATCCC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CAA 90 bp TATGGGACAAAGGTTGGTGTGCCAGAAACAATGTATTTGGATACATaGGCCACAACCACAGACGTCCACTCATCGTCACCATCTTTCTGG +
Preference number: 6 (lower is better)
Translates to: YGTKVGVPETMYLDT*ATTTDVHSSSPSFW
Trigger: CCAGAAAGATGGTGACGATGAGTGGACGTCTGTGGTTGTGGCCAATGTATCCAAATACATTGTTTCTGGCACACCAACCTTTGTCCCATA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CAA 90 bp TCTGAACTCACAAAACCAGAGTCCCCCTCAGCACCAACTCGAACTTaGTATGCTGTTCCTGGCATTAGACCCTTTAACCCAAAGAAGCTT +
Preference number: 6 (lower is better)
Translates to: SELTKPESPSAPTRT*YAVPGIRPFNPKKL
Trigger: AAGCTTCTTTGGGTTAAAGGGTCTAATGCCAGGAACAGCATACAAAGTTCGAGTTGGTGCTGAGGGGGACTCTGGTTTTGTGAGTTCAGA
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 1 transcripts:
ENSMUST00000020939.16
CDS CCA 72 bp AGGTTGGTGTGCCAGAAACAATGTATTTGGATACATTaGCCACAACCACAGACGTCCACTCATCGTCACCAT +
Preference number: 6 (lower is better)
Translates to: RLVCQKQCIWIH*PQPQTSTHRHH
Trigger: ATGGTGACGATGAGTGGACGTCTGTGGTTGTGGCCAATGTATCCAAATACATTGTTTCTGGCACACCAACCT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CAA 72 bp CACCTTGCTCCCCCTCTGGACGACTGCATACTCAGGTaGTTTAATGATCCTGGTTGGATCTTTGATTTCCAA +
Preference number: 6 (lower is better)
Translates to: HLAPPLDDCILR*FNDPGWIFDFQ
Trigger: TTGGAAATCAAAGATCCAACCAGGATCATTAAACAACCTGAGTATGCAGTCGTCCAGAGGGGGAGCAAGGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CAA 72 bp AAGGTTGGTGTGCCAGAAACAATGTATTTGGATACATaGGCCACAACCACAGACGTCCACTCATCGTCACCA +
Preference number: 6 (lower is better)
Translates to: KVGVPETMYLDT*ATTTDVHSSSP
Trigger: TGGTGACGATGAGTGGACGTCTGTGGTTGTGGCCAATGTATCCAAATACATTGTTTCTGGCACACCAACCTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CAA 72 bp AGCTGGCTCTGGTGCAAACCCCACATCATTCAGAGCTaGAACTTTTATCAGGTATGGGACAAAGGTTGGTGT +
Preference number: 6 (lower is better)
Translates to: SWLWCKPHIIQS*NFYQVWDKGWC
Trigger: ACACCAACCTTTGTCCCATACCTGATAAAAGTTCAAGCTCTGAATGATGTGGGGTTTGCACCAGAGCCAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CAA 90 bp TTCAAAGGACACCTTGCTCCCCCTCTGGACGACTGCATACTCAGGTaGTTTAATGATCCTGGTTGGATCTTTGATTTCCAAGTGAACTTC +
Preference number: 6 (lower is better)
Translates to: FKGHLAPPLDDCILR*FNDPGWIFDFQVNF
Trigger: GAAGTTCACTTGGAAATCAAAGATCCAACCAGGATCATTAAACAACCTGAGTATGCAGTCGTCCAGAGGGGGAGCAAGGTGTCCTTTGAA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CAA 90 bp TTTATCAGGTATGGGACAAAGGTTGGTGTGCCAGAAACAATGTATTaGGATACATTGGCCACAACCACAGACGTCCACTCATCGTCACCA +
Preference number: 6 (lower is better)
Translates to: FIRYGTKVGVPETMY*DTLATTTDVHSSSP
Trigger: TGGTGACGATGAGTGGACGTCTGTGGTTGTGGCCAATGTATCCAAATACATTGTTTCTGGCACACCAACCTTTGTCCCATACCTGATAAA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CCA 72 bp CGTGCGACACAAGTATACGTCCCTGTACTATCCTTTTaGGCCACGGGAATTTCTAATGTTCCATTATCATGC +
Preference number: 6 (lower is better)
Translates to: RATQVYVPVLSF*ATGISNVPLSC
Trigger: GCATGATAATGGAACATTAGAAATTCCCGTGGCCCAAAAGGATAGTACAGGGACGTATACTTGTGTCGCACG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CAA 72 bp TATGGGACAAAGGTTGGTGTGCCAGAAACAATGTATTaGGATACATTGGCCACAACCACAGACGTCCACTCA +
Preference number: 6 (lower is better)
Translates to: YGTKVGVPETMY*DTLATTTDVHS
Trigger: TGAGTGGACGTCTGTGGTTGTGGCCAATGTATCCAAATACATTGTTTCTGGCACACCAACCTTTGTCCCATA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS TCA 72 bp ACCAGAGGGCCTAGCTCATGTGTGCTGTTAATTGGCTaGTATTGTAAGATGTACTCAGTCAGGATGCCATTT +
Preference number: 6 (lower is better)
Translates to: TRGPSSCVLLIG*YCKMYSVRMPF
Trigger: AAATGGCATCCTGACTGAGTACATCTTACAATATCAGCCAATTAACAGCACACATGAGCTAGGCCCTCTGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CCA 72 bp GGGTCCATGTCAGCTGAACACTTTTGTCAAGTTGATTaGTCAATTCTAAATCAAAGGGAGGATTCGGGACAT +
Preference number: 6 (lower is better)
Translates to: GSMSAEHFCQVD*SILNQREDSGH
Trigger: ATGTCCCGAATCCTCCCTTTGATTTAGAATTGACCAATCAACTTGACAAAAGTGTTCAGCTGACATGGACCC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CAA 90 bp CCACATCATTCAGAGCTTGAACTTTTATCAGGTATGGGACAAAGGTaGGTGTGCCAGAAACAATGTATTTGGATACATTGGCCACAACCA +
Preference number: 6 (lower is better)
Translates to: PHHSELELLSGMGQR*VCQKQCIWIHWPQP
Trigger: TGGTTGTGGCCAATGTATCCAAATACATTGTTTCTGGCACACCAACCTTTGTCCCATACCTGATAAAAGTTCAAGCTCTGAATGATGTGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CCA 72 bp CAGAGCTTGAACTTTTATCAGGTATGGGACAAAGGTTaGTGTGCCAGAAACAATGTATTTGGATACATTGGC +
Preference number: 6 (lower is better)
Translates to: QSLNFYQVWDKG*CARNNVFGYIG
Trigger: GCCAATGTATCCAAATACATTGTTTCTGGCACACCAACCTTTGTCCCATACCTGATAAAAGTTCAAGCTCTG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CCA 72 bp CCCCACATCATTCAGAGCTTGAACTTTTATCAGGTATaGGACAAAGGTTGGTGTGCCAGAAACAATGTATTT +
Preference number: 6 (lower is better)
Translates to: PHIIQSLNFYQV*DKGWCARNNVF
Trigger: AAATACATTGTTTCTGGCACACCAACCTTTGTCCCATACCTGATAAAAGTTCAAGCTCTGAATGATGTGGGG
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CCA 72 bp GACGACTGCATACTCAGGTTGTTTAATGATCCTGGTTaGATCTTTGATTTCCAAGTGAACTTCATTCTTTGC +
Preference number: 6 (lower is better)
Translates to: DDCILRLFNDPG*IFDFQVNFILC
Trigger: GCAAAGAATGAAGTTCACTTGGAAATCAAAGATCCAACCAGGATCATTAAACAACCTGAGTATGCAGTCGTC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CAA 72 bp TCAGAGCTTGAACTTTTATCAGGTATGGGACAAAGGTaGGTGTGCCAGAAACAATGTATTTGGATACATTGG +
Preference number: 6 (lower is better)
Translates to: SELELLSGMGQR*VCQKQCIWIHW
Trigger: CCAATGTATCCAAATACATTGTTTCTGGCACACCAACCTTTGTCCCATACCTGATAAAAGTTCAAGCTCTGA
40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220123.2
CDS CAA 72 bp CTGAAATTTAAATTTTTCAAAGTCCAGCGGGTCTTGTaGGCAGGAATTTTTAAATCTACCAGAGGGCCTAGC +
Preference number: 6 (lower is better)
Translates to: LKFKFFKVQRVL*AGIFKSTRGPS
Trigger: GCTAGGCCCTCTGGTAGATTTAAAAATTCCTGCCAACAAGACCCGCTGGACTTTGAAAAATTTAAATTTCAG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220082.2
ENSMUST00000220123.2
CDS TCA 72 bp ATGTCTGTGCATAGAAATAGAACTTGTACCGAGTGCTaGAATTTAAATTTTTCAAAGTCCAGCGGGTCTTGT +
Preference number: 6 (lower is better)
Translates to: MSVHRNRTCTEC*NLNFSKSSGSC
Trigger: ACAAGACCCGCTGGACTTTGAAAAATTTAAATTTCAGCACTCGGTACAAGTTCTATTTCTATGCACAGACAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 4 transcripts:
ENSMUST00000020939.16
ENSMUST00000110748.4
ENSMUST00000220082.2
ENSMUST00000220123.2