Pregenerated sensors for NRARP (Mus musculus)
Ensembl gene IDs: ENSMUSG00000078202Ensembl transcript IDs: ENSMUST00000104999.4
Found 64 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | CGGCGGGCGCCGCACTGTGAGCGGCCGGGTCTCACGAGCGGCGGCTaGAGCGCGAGTCCGCCCGCGCCTTTCACCTTCCGGAGAAAACAT | + |
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Preference number: 1 (lower is better) Translates to: RRAPHCERPGLTSGG*SASPPAPFTFRRKH Trigger: ATGTTTTCTCCGGAAGGTGAAAGGCGCGGGCGGACTCGCGCTCCAGCCGCCGCTCGTGAGACCCGGCCGCTCACAGTGCGGCGCCCGCCG 72% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| 3UTR CCA 90 bp | CCGATTTCCACGCGGACCAGCAAACCTGGCGCACACCGAGGTAGTTaGCGGGAAGGTACAGCAGAGACGACGCGGGTGGGGGCCAGGGGC | + |
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Preference number: 1 (lower is better) Translates to: PISTRTSKPGAHRGS*REGTAETTRVGARG Trigger: GCCCCTGGCCCCCACCCGCGTCGTCTCTGCTGTACCTTCCCGCCAACTACCTCGGTGTGCGCCAGGTTTGCTGGTCCGCGTGGAAATCGG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| 3UTR GCA 90 bp | TATGGCCAGGCGGCACAAAGGGCTCCACCCACCTGTGTCCTCAAGTaGTCCCCATTTTTGCACGCAGGGTCAGCAGCACTTCTACGAAGG | + |
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Preference number: 1 (lower is better) Translates to: YGQAAQRAPPTCVLK*SPFLHAGSAALLRR Trigger: CCTTCGTAGAAGTGCTGCTGACCCTGCGTGCAAAAATGGGGAGCACTTGAGGACACAGGTGGGTGGAGCCCTTTGTGCCGCCTGGCCATA 59% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| 3UTR CCA 90 bp | CGCGGGCTTCAAGAGCCCTTTGGAACTTTGCTAAACCAGCCTGTGTaGGGAATGGTGGCCTCTCACGGGAGGGGAAAGGGAGACAGATCC | + |
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Preference number: 1 (lower is better) Translates to: RGLQEPFGTLLNQPV*GMVASHGRGKGDRS Trigger: GGATCTGTCTCCCTTTCCCCTCCCGTGAGAGGCCACCATTCCCCACACAGGCTGGTTTAGCAAAGTTCCAAAGGGCTCTTGAAGCCCGCG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| 3UTR CCA 90 bp | TCTCAGAATCCCCACGTCCCAGCCACGCGGGCTTCAAGAGCCCTTTaGAACTTTGCTAAACCAGCCTGTGTGGGGAATGGTGGCCTCTCA | + |
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Preference number: 1 (lower is better) Translates to: SQNPHVPATRASRAL*NFAKPACVGNGGLS Trigger: TGAGAGGCCACCATTCCCCACACAGGCTGGTTTAGCAAAGTTCCAAAGGGCTCTTGAAGCCCGCGTGGCTGGGACGTGGGGATTCTGAGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| 3UTR CCA 90 bp | ATTCCTCCCACACTGGTTCATAAAAGCGCAGAAGACCGAAGAATATaGCCAGGCGGCACAAAGGGCTCCACCCACCTGTGTCCTCAAGTG | + |
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Preference number: 1 (lower is better) Translates to: IPPTLVHKSAEDRRI*PGGTKGSTHLCPQV Trigger: CACTTGAGGACACAGGTGGGTGGAGCCCTTTGTGCCGCCTGGCCATATTCTTCGGTCTTCTGCGCTTTTATGAACCAGTGTGGGAGGAAT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| 3UTR TCA 90 bp | GCGCACAAACTTCACCCACAAATATACACACACGTGATAAATAGTTaGGGACATCAGGAACCCGGAGCGTCCCCTTCCCTTCCTAAGTGC | + |
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Preference number: 1 (lower is better) Translates to: AHKLHPQIYTHVINS*GHQEPGASPSLPKC Trigger: GCACTTAGGAAGGGAAGGGGACGCTCCGGGTTCCTGATGTCCTCAACTATTTATCACGTGTGTGTATATTTGTGGGTGAAGTTTGTGCGC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| 3UTR GCA 90 bp | CCATACAGAACTCCTTTTGAAGTAATCTGTGCTTGTCTCAGTGTCTaGCATTCTCATGACATTATCACTATTCCTCCCACACTGGTTCAT | + |
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Preference number: 1 (lower is better) Translates to: PYRTPFEVICACLSV*HSHDIITIPPTLVH Trigger: ATGAACCAGTGTGGGAGGAATAGTGATAATGTCATGAGAATGGCAGACACTGAGACAAGCACAGATTACTTCAAAAGGAGTTCTGTATGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| 3UTR-3UTR CCA 90 bp | CACCTGTGTCCTCAAGTGCTCCCCATTTTTGCACGCAGGGTCAGCAGCACTTCTCAGAGACGACGCGGGTaGGGGCCAGGGGCCGGAGTC | + |
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Preference number: 2 (lower is better) Translates to: HLCPQVLPIFARRVSSTSQRRRG*GPGAGV Trigger: GACTCCGGCCCCTGGCCCCCACCCGCGTCGTCTCTG...AGAAGTGCTGCTGACCCTGCGTGCAAAAATGGGGAGCACTTGAGGACACAGGTG 63% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| 3UTR CAA 90 bp | ATCCCCACGTCCCAGCCACGCGGGCTTCAAGAGCCCTTTGGAACTTaGCTAAACCAGCCTGTGTGGGGAATGGTGGCCTCTCACGGGAGG | + |
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Preference number: 2 (lower is better) Translates to: IPTSQPRGLQEPFGT*LNQPVWGMVASHGR Trigger: CCTCCCGTGAGAGGCCACCATTCCCCACACAGGCTGGTTTAGCAAAGTTCCAAAGGGCTCTTGAAGCCCGCGTGGCTGGGACGTGGGGAT 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| 3UTR-3UTR CCA 90 bp | TGCTCTCAGAATCCCCACGTCCCAGCCACGCGGGCTTCAAGAGCCCTTTGGAACGCACACCGAGGTAGTTaGCGGGAAGGTACAGCAGAG | + |
|
Preference number: 2 (lower is better) Translates to: CSQNPHVPATRASRALWNAHRGS*REGTAE Trigger: CTCTGCTGTACCTTCCCGCCAACTACCTCGGTGTGC...GTTCCAAAGGGCTCTTGAAGCCCGCGTGGCTGGGACGTGGGGATTCTGAGAGCA 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| 3UTR-3UTR CCA 90 bp | TTTCACCTTCCGGAGAAAACATTTCAAGCGGAGGATCCGGTATCTCGGGATTCCAATTTCAAAACGGACTaGAGCCTGCGCCCCGCCCCC | + |
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Preference number: 2 (lower is better) Translates to: FHLPEKTFQAEDPVSRDSNFKTD*SLRPAP Trigger: GGGGGCGGGGCGCAGGCTCCAGTCCGTTTTGAAATT...GGAATCCCGAGATACCGGATCCTCCGCTTGAAATGTTTTCTCCGGAAGGTGAAA 54% GC, longest homopolymer 5 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| 3UTR-3UTR TCA 90 bp | CATTTTTGCACGCAGGGTCAGCAGCACTTCTACGAAGGGGAAACCTCATTTAAATTCTGGGACAGCCAGTaGCGCTCCAGCACCTCCTCC | + |
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Preference number: 2 (lower is better) Translates to: HFCTQGQQHFYEGETSFKFWDSQ*RSSTSS Trigger: GGAGGAGGTGCTGGAGCGTCACTGGCTGTCCCAGAA...TTTAAATGAGGTTTCCCCTTCGTAGAAGTGCTGCTGACCCTGCGTGCAAAAATG 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| 3UTR-3UTR TCA 90 bp | GGCCTCTCACGGGAGGGGAAAGGGAGACAGATCCTAGGCTCTCTAAACTCAGAACGAAGTCTCCCGGTGTaGGACTCAAATTTCAAAACG | + |
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Preference number: 2 (lower is better) Translates to: GLSREGKGRQILGSLNSERSLPV*DSNFKT Trigger: CGTTTTGAAATTTGAGTCTCACACCGGGAGACTTCG...TTCTGAGTTTAGAGAGCCTAGGATCTGTCTCCCTTTCCCCTCCCGTGAGAGGCC 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| 3UTR-3UTR GCA 90 bp | AAAAATATAAATATGGGTACACAACAGCCTTCACAACGCTGGATACAACGCCCTGGGGAGGCGCTCTTTTaGGGAGAGCCGAACCCTGGG | + |
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Preference number: 2 (lower is better) Translates to: KNINMGTQQPSQRWIQRPGEALF*GEPNPG Trigger: CCCAGGGTTCGGCTCTCCGCAAAAGAGCGCCTCCCC...AGGGCGTTGTATCCAGCGTTGTGAAGGCTGTTGTGTACCCATATTTATATTTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| 3UTR-3UTR CCA 90 bp | CACCTGTGTCCTCAAGTGCTCCCCATTTTTGCACGCAGGGTCAGCAGCACTTCTCAGCCTTCACAACGCTaGATACAACGCCCTTTAAAA | + |
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Preference number: 2 (lower is better) Translates to: HLCPQVLPIFARRVSSTSQPSQR*IQRPLK Trigger: TTTTAAAGGGCGTTGTATCCAGCGTTGTGAAGGCTG...AGAAGTGCTGCTGACCCTGCGTGCAAAAATGGGGAGCACTTGAGGACACAGGTG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| 3UTR-3UTR GCA 90 bp | CACCTGTGTCCTCAAGTGCTCCCCATTTTTGCACGCAGGGTCAGCAGCACTTCTGAAGGGGAATGGAGATaGATAGAAAATTGGAACCAC | + |
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Preference number: 2 (lower is better) Translates to: HLCPQVLPIFARRVSSTSEGEWR*IENWNH Trigger: GTGGTTCCAATTTTCTATGCATCTCCATTCCCCTTC...AGAAGTGCTGCTGACCCTGCGTGCAAAAATGGGGAGCACTTGAGGACACAGGTG 50% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| 3UTR CCA 72 bp | ACGCGGACCAGCAAACCTGGCGCACACCGAGGTAGTTaGCGGGAAGGTACAGCAGAGACGACGCGGGTGGGG | + |
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Preference number: 3 (lower is better) Translates to: TRTSKPGAHRGS*REGTAETTRVG Trigger: CCCCACCCGCGTCGTCTCTGCTGTACCTTCCCGCCAACTACCTCGGTGTGCGCCAGGTTTGCTGGTCCGCGT 67% GC, longest homopolymer 4 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| 3UTR GCA 72 bp | CATCAGGAACCCGGAGCGTCCCCTTCCCTTCCTAAGTaGGAGGGCGCGCAGATGGTGGAGCCCGGTAATGGT | + |
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Preference number: 3 (lower is better) Translates to: HQEPGASPSLPK*EGAQMVEPGNG Trigger: ACCATTACCGGGCTCCACCATCTGCGCGCCCTCGCACTTAGGAAGGGAAGGGGACGCTCCGGGTTCCTGATG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| 3UTR GCA 72 bp | GCGGCACAAAGGGCTCCACCCACCTGTGTCCTCAAGTaGTCCCCATTTTTGCACGCAGGGTCAGCAGCACTT | + |
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Preference number: 3 (lower is better) Translates to: AAQRAPPTCVLK*SPFLHAGSAAL Trigger: AAGTGCTGCTGACCCTGCGTGCAAAAATGGGGAGCACTTGAGGACACAGGTGGGTGGAGCCCTTTGTGCCGC 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| 3UTR CCA 72 bp | CAAGAGCCCTTTGGAACTTTGCTAAACCAGCCTGTGTaGGGAATGGTGGCCTCTCACGGGAGGGGAAAGGGA | + |
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Preference number: 3 (lower is better) Translates to: QEPFGTLLNQPV*GMVASHGRGKG Trigger: TCCCTTTCCCCTCCCGTGAGAGGCCACCATTCCCCACACAGGCTGGTTTAGCAAAGTTCCAAAGGGCTCTTG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| 3UTR TCA 72 bp | GGATCCGGTATCTCGGGATTCCGAAGTCTCCCGGTGTaGGACTCAAATTTCAAAACGGACTGGAGCCTGCGC | + |
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Preference number: 3 (lower is better) Translates to: GSGISGFRSLPV*DSNFKTDWSLR Trigger: GCGCAGGCTCCAGTCCGTTTTGAAATTTGAGTCTCACACCGGGAGACTTCGGAATCCCGAGATACCGGATCC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| 3UTR CCA 72 bp | ACACTGGTTCATAAAAGCGCAGAAGACCGAAGAATATaGCCAGGCGGCACAAAGGGCTCCACCCACCTGTGT | + |
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Preference number: 3 (lower is better) Translates to: TLVHKSAEDRRI*PGGTKGSTHLC Trigger: ACACAGGTGGGTGGAGCCCTTTGTGCCGCCTGGCCATATTCTTCGGTCTTCTGCGCTTTTATGAACCAGTGT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| 3UTR CCA 72 bp | GCCATTCTCATGACATTATCACTATTCCTCCCACACTaGTTCATAAAAGCGCAGAAGACCGAAGAATATGGC | + |
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Preference number: 3 (lower is better) Translates to: AILMTLSLFLPH*FIKAQKTEEYG Trigger: GCCATATTCTTCGGTCTTCTGCGCTTTTATGAACCAGTGTGGGAGGAATAGTGATAATGTCATGAGAATGGC 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| 3UTR GCA 72 bp | ACTCCTTTTGAAGTAATCTGTGCTTGTCTCAGTGTCTaGCATTCTCATGACATTATCACTATTCCTCCCACA | + |
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Preference number: 3 (lower is better) Translates to: TPFEVICACLSV*HSHDIITIPPT Trigger: TGTGGGAGGAATAGTGATAATGTCATGAGAATGGCAGACACTGAGACAAGCACAGATTACTTCAAAAGGAGT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS-3UTR CCA 90 bp | CACCGAGGTAGTTGGCGGGAAGGTACAGCAGAGACGACGCGGGTGGGGGCCAGGGATGCGCTGCGTCTGTaGCGCCGAGCAGGTGGACAG | + |
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Preference number: 4 (lower is better) Translates to: HRGSWREGTAETTRVGARDALRL*RRAGGQ Trigger: CTGTCCACCTGCTCGGCGCCACAGACGCAGCGCATC...CCTGGCCCCCACCCGCGTCGTCTCTGCTGTACCTTCCCGCCAACTACCTCGGTG 68% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS-3UTR GCA 90 bp | GCGGCTGGAGCGCGAGTCCGCCCGCGCCTTTCACCTTCCGGAGAAAACATTTCACCGCTTCCTGGAAGATaGGCTGCGTCTGTGGCGCCG | + |
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Preference number: 4 (lower is better) Translates to: AAGARVRPRLSPSGENISPLPGR*AASVAP Trigger: CGGCGCCACAGACGCAGCGCATCTTCCAGGAAGCGG...TGAAATGTTTTCTCCGGAAGGTGAAAGGCGCGGGCGGACTCGCGCTCCAGCCGC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS-3UTR CCA 90 bp | CCTGGTCCTTGGCACAGCCCCTCCCTCATGGCTGGATCCTCAGATCATAATAGGGTGGCGCCGAGCAGGTaGACAGCTCGGCTTGGCTCA | + |
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Preference number: 4 (lower is better) Translates to: PGPWHSPSLMAGSSDHNRVAPSR*TARLGS Trigger: TGAGCCAAGCCGAGCTGTCCACCTGCTCGGCGCCAC...CCTATTATGATCTGAGGATCCAGCCATGAGGGAGGGGCTGTGCCAAGGACCAGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS-3UTR CCA 90 bp | TTGCTAAACCAGCCTGTGTGGGGAATGGTGGCCTCTCACGGGAGGGGAAAGGGATTGCGCACCGCTTCCTaGAAGATGCGCTGCGTCTGT | + |
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Preference number: 4 (lower is better) Translates to: LLNQPVWGMVASHGRGKGLRTAS*KMRCVC Trigger: ACAGACGCAGCGCATCTTCCAGGAAGCGGTGCGCAA...TCCCTTTCCCCTCCCGTGAGAGGCCACCATTCCCCACACAGGCTGGTTTAGCAA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS-3UTR CCA 90 bp | CACCTGTGTCCTCAAGTGCTCCCCATTTTTGCACGCAGGGTCAGCAGCACTTCTAGCACGATGTCCTGGTaGCCCCCGAAAGCGGCGATG | + |
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Preference number: 4 (lower is better) Translates to: HLCPQVLPIFARRVSSTSSTMSW*PPKAAM Trigger: CATCGCCGCTTTCGGGGGCCACCAGGACATCGTGCT...AGAAGTGCTGCTGACCCTGCGTGCAAAAATGGGGAGCACTTGAGGACACAGGTG 59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| 3UTR CAA 72 bp | TCCCAGCCACGCGGGCTTCAAGAGCCCTTTGGAACTTaGCTAAACCAGCCTGTGTGGGGAATGGTGGCCTCT | + |
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Preference number: 4 (lower is better) Translates to: SQPRGLQEPFGT*LNQPVWGMVAS Trigger: AGAGGCCACCATTCCCCACACAGGCTGGTTTAGCAAAGTTCCAAAGGGCTCTTGAAGCCCGCGTGGCTGGGA 58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS-3UTR GCA 90 bp | CATTTTTGCACGCAGGGTCAGCAGCACTTCTACGAAGGGGAAACCTCATTTAAATTCTGCAGCAGCGACTaGAGCTCCTGCGTGTTGCCC | + |
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Preference number: 4 (lower is better) Translates to: HFCTQGQQHFYEGETSFKFCSSD*SSCVLP Trigger: GGGCAACACGCAGGAGCTGCAGTCGCTGCTGCAGAA...TTTAAATGAGGTTTCCCCTTCGTAGAAGTGCTGCTGACCCTGCGTGCAAAAATG 52% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS-3UTR CCA 90 bp | TGTCTCAGTGTCTGCCATTCTCATGACATTATCACTATTCCTCCCACACTGGTTTGGTGTAGTGCTGTCTaGCCCTCCGGCCCGAACGAG | + |
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Preference number: 4 (lower is better) Translates to: CLSVCHSHDIITIPPTLVWCSAV*PSGPNE Trigger: CTCGTTCGGGCCGGAGGGCCAGACAGCACTACACCA...AACCAGTGTGGGAGGAATAGTGATAATGTCATGAGAATGGCAGACACTGAGACA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS-3UTR TCA 90 bp | CATTTTTGCACGCAGGGTCAGCAGCACTTCTACGAAGGGGAAACCTCATTTAAACCAGGTTGCCGTCGATaGCTGACTGGTGTAGTGCTG | + |
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Preference number: 4 (lower is better) Translates to: HFCTQGQQHFYEGETSFKPGCRR*LTGVVL Trigger: CAGCACTACACCAGTCAGTCATCGACGGCAACCTGG...TTTAAATGAGGTTTCCCCTTCGTAGAAGTGCTGCTGACCCTGCGTGCAAAAATG 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS-3UTR GCA 90 bp | AAAAATATAAATATGGGTACACAACAGCCTTCACAACGCTGGATACAACGCCCTTCCTGGAAGATGCGCTaGGTCTGTGGCGCCGAGCAG | + |
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Preference number: 4 (lower is better) Translates to: KNINMGTQQPSQRWIQRPSWKMR*VCGAEQ Trigger: CTGCTCGGCGCCACAGACGCAGCGCATCTTCCAGGA...AGGGCGTTGTATCCAGCGTTGTGAAGGCTGTTGTGTACCCATATTTATATTTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS-3UTR GCA 90 bp | AGTGTCTGCCATTCTCATGACATTATCACTATTCCTCCCACACTGGTTCATAAAGCAGCTCCTGCGTGTTaGCCTTGCGCACCGCTTCCT | + |
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Preference number: 4 (lower is better) Translates to: SVCHSHDIITIPPTLVHKAAPAC*PCAPLP Trigger: AGGAAGCGGTGCGCAAGGGCAACACGCAGGAGCTGC...TTTATGAACCAGTGTGGGAGGAATAGTGATAATGTCATGAGAATGGCAGACACT 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS-3UTR GCA 90 bp | AAAAATATAAATATGGGTACACAACAGCCTTCACAACGCTGGATACAACGCCCTAGCGACTGCAGCTCCTaGGTGTTGCCCTTGCGCACC | + |
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Preference number: 4 (lower is better) Translates to: KNINMGTQQPSQRWIQRPSDCSS*VLPLRT Trigger: GGTGCGCAAGGGCAACACGCAGGAGCTGCAGTCGCT...AGGGCGTTGTATCCAGCGTTGTGAAGGCTGTTGTGTACCCATATTTATATTTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS-3UTR CCA 90 bp | AAAAATATAAATATGGGTACACAACAGCCTTCACAACGCTGGATACAACGCCCTCCGTCGATGACTGACTaGTGTAGTGCTGTCTGGCCC | + |
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Preference number: 4 (lower is better) Translates to: KNINMGTQQPSQRWIQRPPSMTD*CSAVWP Trigger: GGGCCAGACAGCACTACACCAGTCAGTCATCGACGG...AGGGCGTTGTATCCAGCGTTGTGAAGGCTGTTGTGTACCCATATTTATATTTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS-3UTR GCA 90 bp | AAAAATATAAATATGGGTACACAACAGCCTTCACAACGCTGGATACAACGCCCTCAGTTAGTCATGTTCTaGAGCAGCGACTGCAGCTCC | + |
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Preference number: 4 (lower is better) Translates to: KNINMGTQQPSQRWIQRPQLVMF*SSDCSS Trigger: GGAGCTGCAGTCGCTGCTGCAGAACATGACTAACTG...AGGGCGTTGTATCCAGCGTTGTGAAGGCTGTTGTGTACCCATATTTATATTTTT 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS GCA 90 bp | ACTGCAGCTCCTGCGTGTTGCCCTTGCGCACCGCTTCCTGGAAGATaGGCTGCGTCTGTGGCGCCGAGCAGGTGGACAGCTCGGCTTGGC | + |
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Preference number: 5 (lower is better) Translates to: TAAPACCPCAPLPGR*AASVAPSRWTARLG Trigger: GCCAAGCCGAGCTGTCCACCTGCTCGGCGCCACAGACGCAGCGCATCTTCCAGGAAGCGGTGCGCAAGGGCAACACGCAGGAGCTGCAGT 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS-3UTR CAA 90 bp | CACCTGTGTCCTCAAGTGCTCCCCATTTTTGCACGCAGGGTCAGCAGCACTTCTTGCAGCTCCTGCGTGTaGCCCTTGCGCACCGCTTCC | + |
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Preference number: 5 (lower is better) Translates to: HLCPQVLPIFARRVSSTSCSSCV*PLRTAS Trigger: GGAAGCGGTGCGCAAGGGCAACACGCAGGAGCTGCA...AGAAGTGCTGCTGACCCTGCGTGCAAAAATGGGGAGCACTTGAGGACACAGGTG 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS GCA 90 bp | TCCGGCCCGAACGAGTTCACGTTGAATTCGCAGTTAGTCATGTTCTaGAGCAGCGACTGCAGCTCCTGCGTGTTGCCCTTGCGCACCGCT | + |
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Preference number: 5 (lower is better) Translates to: SGPNEFTLNSQLVMF*SSDCSSCVLPLRTA Trigger: AGCGGTGCGCAAGGGCAACACGCAGGAGCTGCAGTCGCTGCTGCAGAACATGACTAACTGCGAATTCAACGTGAACTCGTTCGGGCCGGA 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS GCA 90 bp | TTGAATTCGCAGTTAGTCATGTTCTGCAGCAGCGACTGCAGCTCCTaGGTGTTGCCCTTGCGCACCGCTTCCTGGAAGATGCGCTGCGTC | + |
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Preference number: 5 (lower is better) Translates to: LNSQLVMFCSSDCSS*VLPLRTASWKMRCV Trigger: GACGCAGCGCATCTTCCAGGAAGCGGTGCGCAAGGGCAACACGCAGGAGCTGCAGTCGCTGCTGCAGAACATGACTAACTGCGAATTCAA 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS CCA 90 bp | ACCAGCTCCAGGTTGCCGTCGATGACTGACTGGTGTAGTGCTGTCTaGCCCTCCGGCCCGAACGAGTTCACGTTGAATTCGCAGTTAGTC | + |
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Preference number: 5 (lower is better) Translates to: TSSRLPSMTDWCSAV*PSGPNEFTLNSQLV Trigger: GACTAACTGCGAATTCAACGTGAACTCGTTCGGGCCGGAGGGCCAGACAGCACTACACCAGTCAGTCATCGACGGCAACCTGGAGCTGGT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS-3UTR CAA 90 bp | AGAATATGGCCAGGCGGCACAAAGGGCTCCACCCACCTGTGTCCTCAAGTGCTCATGTCGGCTCCGAACTaGACCAACAGCTTCACCAGC | + |
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Preference number: 5 (lower is better) Translates to: RIWPGGTKGSTHLCPQVLMSAPN*TNSFTS Trigger: GCTGGTGAAGCTGTTGGTCAAGTTCGGAGCCGACAT...GAGCACTTGAGGACACAGGTGGGTGGAGCCCTTTGTGCCGCCTGGCCATATTCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS GCA 90 bp | GAGTTCACGTTGAATTCGCAGTTAGTCATGTTCTGCAGCAGCGACTaGAGCTCCTGCGTGTTGCCCTTGCGCACCGCTTCCTGGAAGATG | + |
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Preference number: 5 (lower is better) Translates to: EFTLNSQLVMFCSSD*SSCVLPLRTASWKM Trigger: CATCTTCCAGGAAGCGGTGCGCAAGGGCAACACGCAGGAGCTGCAGTCGCTGCTGCAGAACATGACTAACTGCGAATTCAACGTGAACTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS-3UTR CAA 90 bp | TGTGTCCTCAAGTGCTCCCCATTTTTGCACGCAGGGTCAGCAGCACTTCTACGATTCACCAGCTCCAGGTaGCCGTCGATGACTGACTGG | + |
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Preference number: 5 (lower is better) Translates to: CVLKCSPFLHAGSAALLRFTSSR*PSMTDW Trigger: CCAGTCAGTCATCGACGGCAACCTGGAGCTGGTGAA...TCGTAGAAGTGCTGCTGACCCTGCGTGCAAAAATGGGGAGCACTTGAGGACACA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS-3UTR CAA 90 bp | GTATCTCGGGATTCCGAAGTCTCCCGGTGTGAGACTCAAATTTCAAAACGGACTTCCTGCGTGTTGCCCTaGCGCACCGCTTCCTGGAAG | + |
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Preference number: 5 (lower is better) Translates to: VSRDSEVSRCETQISKRTSCVLP*RTASWK Trigger: CTTCCAGGAAGCGGTGCGCAAGGGCAACACGCAGGA...AGTCCGTTTTGAAATTTGAGTCTCACACCGGGAGACTTCGGAATCCCGAGATAC 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS-3UTR CAA 90 bp | AAAAATATAAATATGGGTACACAACAGCCTTCACAACGCTGGATACAACGCCCTCCGAACGAGTTCACGTaGAATTCGCAGTTAGTCATG | + |
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Preference number: 5 (lower is better) Translates to: KNINMGTQQPSQRWIQRPPNEFT*NSQLVM Trigger: CATGACTAACTGCGAATTCAACGTGAACTCGTTCGG...AGGGCGTTGTATCCAGCGTTGTGAAGGCTGTTGTGTACCCATATTTATATTTTT 43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS GCA 72 bp | GTGTTGCCCTTGCGCACCGCTTCCTGGAAGATGCGCTaGGTCTGTGGCGCCGAGCAGGTGGACAGCTCGGCT | + |
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Preference number: 6 (lower is better) Translates to: VLPLRTASWKMR*VCGAEQVDSSA Trigger: AGCCGAGCTGTCCACCTGCTCGGCGCCACAGACGCAGCGCATCTTCCAGGAAGCGGTGCGCAAGGGCAACAC 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS GCA 72 bp | CCTGCGTGTTGCCCTTGCGCACCGCTTCCTGGAAGATaGGCTGCGTCTGTGGCGCCGAGCAGGTGGACAGCT | + |
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Preference number: 6 (lower is better) Translates to: PACCPCAPLPGR*AASVAPSRWTA Trigger: AGCTGTCCACCTGCTCGGCGCCACAGACGCAGCGCATCTTCCAGGAAGCGGTGCGCAAGGGCAACACGCAGG 67% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS CCA 72 bp | CTTGCGCACCGCTTCCTGGAAGATGCGCTGCGTCTGTaGCGCCGAGCAGGTGGACAGCTCGGCTTGGCTCAT | + |
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Preference number: 6 (lower is better) Translates to: LAHRFLEDALRL*RRAGGQLGLAH Trigger: ATGAGCCAAGCCGAGCTGTCCACCTGCTCGGCGCCACAGACGCAGCGCATCTTCCAGGAAGCGGTGCGCAAG 65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS CAA 90 bp | TTAGTCATGTTCTGCAGCAGCGACTGCAGCTCCTGCGTGTTGCCCTaGCGCACCGCTTCCTGGAAGATGCGCTGCGTCTGTGGCGCCGAG | + |
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Preference number: 6 (lower is better) Translates to: LVMFCSSDCSSCVLP*RTASWKMRCVCGAE Trigger: CTCGGCGCCACAGACGCAGCGCATCTTCCAGGAAGCGGTGCGCAAGGGCAACACGCAGGAGCTGCAGTCGCTGCTGCAGAACATGACTAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS GCA 72 bp | TCATGTTCTGCAGCAGCGACTGCAGCTCCTGCGTGTTaGCCTTGCGCACCGCTTCCTGGAAGATGCGCTGCG | + |
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Preference number: 6 (lower is better) Translates to: SCSAAATAAPAC*PCAPLPGRCAA Trigger: CGCAGCGCATCTTCCAGGAAGCGGTGCGCAAGGGCAACACGCAGGAGCTGCAGTCGCTGCTGCAGAACATGA 62% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS CCA 72 bp | AGCTTCACCAGCTCCAGGTTGCCGTCGATGACTGACTaGTGTAGTGCTGTCTGGCCCTCCGGCCCGAACGAG | + |
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Preference number: 6 (lower is better) Translates to: SFTSSRLPSMTD*CSAVWPSGPNE Trigger: CTCGTTCGGGCCGGAGGGCCAGACAGCACTACACCAGTCAGTCATCGACGGCAACCTGGAGCTGGTGAAGCT 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS CAA 72 bp | TTCTGCAGCAGCGACTGCAGCTCCTGCGTGTTGCCCTaGCGCACCGCTTCCTGGAAGATGCGCTGCGTCTGT | + |
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Preference number: 6 (lower is better) Translates to: FCSSDCSSCVLP*RTASWKMRCVC Trigger: ACAGACGCAGCGCATCTTCCAGGAAGCGGTGCGCAAGGGCAACACGCAGGAGCTGCAGTCGCTGCTGCAGAA 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS CAA 72 bp | GTCATGTTCTGCAGCAGCGACTGCAGCTCCTGCGTGTaGCCCTTGCGCACCGCTTCCTGGAAGATGCGCTGC | + |
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Preference number: 6 (lower is better) Translates to: VMFCSSDCSSCV*PLRTASWKMRC Trigger: GCAGCGCATCTTCCAGGAAGCGGTGCGCAAGGGCAACACGCAGGAGCTGCAGTCGCTGCTGCAGAACATGAC 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS CAA 90 bp | TCGCAGTTAGTCATGTTCTGCAGCAGCGACTGCAGCTCCTGCGTGTaGCCCTTGCGCACCGCTTCCTGGAAGATGCGCTGCGTCTGTGGC | + |
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Preference number: 6 (lower is better) Translates to: SQLVMFCSSDCSSCV*PLRTASWKMRCVCG Trigger: GCCACAGACGCAGCGCATCTTCCAGGAAGCGGTGCGCAAGGGCAACACGCAGGAGCTGCAGTCGCTGCTGCAGAACATGACTAACTGCGA 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS CAA 90 bp | GACTGGTGTAGTGCTGTCTGGCCCTCCGGCCCGAACGAGTTCACGTaGAATTCGCAGTTAGTCATGTTCTGCAGCAGCGACTGCAGCTCC | + |
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Preference number: 6 (lower is better) Translates to: DWCSAVWPSGPNEFT*NSQLVMFCSSDCSS Trigger: GGAGCTGCAGTCGCTGCTGCAGAACATGACTAACTGCGAATTCAACGTGAACTCGTTCGGGCCGGAGGGCCAGACAGCACTACACCAGTC 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS GCA 72 bp | CAGTTAGTCATGTTCTGCAGCAGCGACTGCAGCTCCTaGGTGTTGCCCTTGCGCACCGCTTCCTGGAAGATG | + |
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Preference number: 6 (lower is better) Translates to: QLVMFCSSDCSS*VLPLRTASWKM Trigger: CATCTTCCAGGAAGCGGTGCGCAAGGGCAACACGCAGGAGCTGCAGTCGCTGCTGCAGAACATGACTAACTG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS CCA 72 bp | AGGTTGCCGTCGATGACTGACTGGTGTAGTGCTGTCTaGCCCTCCGGCCCGAACGAGTTCACGTTGAATTCG | + |
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Preference number: 6 (lower is better) Translates to: RLPSMTDWCSAV*PSGPNEFTLNS Trigger: CGAATTCAACGTGAACTCGTTCGGGCCGGAGGGCCAGACAGCACTACACCAGTCAGTCATCGACGGCAACCT 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS GCA 72 bp | TTGAATTCGCAGTTAGTCATGTTCTGCAGCAGCGACTaGAGCTCCTGCGTGTTGCCCTTGCGCACCGCTTCC | + |
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Preference number: 6 (lower is better) Translates to: LNSQLVMFCSSD*SSCVLPLRTAS Trigger: GGAAGCGGTGCGCAAGGGCAACACGCAGGAGCTGCAGTCGCTGCTGCAGAACATGACTAACTGCGAATTCAA 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS CAA 72 bp | AGTGCTGTCTGGCCCTCCGGCCCGAACGAGTTCACGTaGAATTCGCAGTTAGTCATGTTCTGCAGCAGCGAC | + |
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Preference number: 6 (lower is better) Translates to: SAVWPSGPNEFT*NSQLVMFCSSD Trigger: GTCGCTGCTGCAGAACATGACTAACTGCGAATTCAACGTGAACTCGTTCGGGCCGGAGGGCCAGACAGCACT 57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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| CDS GCA 72 bp | AACGAGTTCACGTTGAATTCGCAGTTAGTCATGTTCTaGAGCAGCGACTGCAGCTCCTGCGTGTTGCCCTTG | + |
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Preference number: 6 (lower is better) Translates to: NEFTLNSQLVMF*SSDCSSCVLPL Trigger: CAAGGGCAACACGCAGGAGCTGCAGTCGCTGCTGCAGAACATGACTAACTGCGAATTCAACGTGAACTCGTT 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000104999.4 |
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