Pregenerated sensors for NRADD (Mus musculus)
Ensembl gene IDs: ENSMUSG00000032491Ensembl transcript IDs: ENSMUST00000035069.14, ENSMUST00000196735.2, ENSMUST00000196876.2
Found 28 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | CCCCATGTCCCTCGCTTCTATCTTGGAGAGGATGGAGAAGGAACATaGAGTGGCCGGATCTTTTGTGTTCTGCTGCCACAACAGCAAGCT | + |
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Preference number: 1 (lower is better) Translates to: PHVPRFYLGEDGEGT*SGRIFCVLLPQQQA Trigger: AGCTTGCTGTTGTGGCAGCAGAACACAAAAGATCCGGCCACTTCATGTTCCTTCTCCATCCTCTCCAAGATAGAAGCGAGGGACATGGGG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035069.14 |
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| 3UTR-3UTR CCA 90 bp | AAGGGGCAGAACGAGAATCTGTGGGCAAAGCCATGCCCACTCTCTTACCCACCCCCCTCGCTTCTATCTTaGAGAGGATGGAGAAGGAAC | + |
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Preference number: 2 (lower is better) Translates to: KGQNENLWAKPCPLSYPPPSLLS*RGWRRN Trigger: GTTCCTTCTCCATCCTCTCCAAGATAGAAGCGAGGG...GGGTGGGTAAGAGAGTGGGCATGGCTTTGCCCACAGATTCTCGTTCTGCCCCTT 54% GC, longest homopolymer 6 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000035069.14 |
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| 3UTR-3UTR CCA 90 bp | AAGGGGCAGAACGAGAATCTGTGGGCAAAGCCATGCCCACTCTCTTACCCACCCAGAAGGAACATGAAGTaGCCGGATCTTTTGTGTTCT | + |
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Preference number: 2 (lower is better) Translates to: KGQNENLWAKPCPLSYPPRRNMK*PDLLCS Trigger: AGAACACAAAAGATCCGGCCACTTCATGTTCCTTCT...GGGTGGGTAAGAGAGTGGGCATGGCTTTGCCCACAGATTCTCGTTCTGCCCCTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000035069.14 |
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| 3UTR TCA 72 bp | CCTCGCTTCTATCTTGGAGAGGATGGAGAAGGAACATaGAGTGGCCGGATCTTTTGTGTTCTGCTGCCACAA | + |
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Preference number: 3 (lower is better) Translates to: PRFYLGEDGEGT*SGRIFCVLLPQ Trigger: TTGTGGCAGCAGAACACAAAAGATCCGGCCACTTCATGTTCCTTCTCCATCCTCTCCAAGATAGAAGCGAGG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035069.14 |
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| 3UTR GCA 72 bp | GAGAAGGAACATGAAGTGGCCGGATCTTTTGTGTTCTaGTGCCACAACAGCAAGCTGAAGCCAGAGAAGTAC | + |
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Preference number: 3 (lower is better) Translates to: EKEHEVAGSFVF*CHNSKLKPEKY Trigger: GTACTTCTCTGGCTTCAGCTTGCTGTTGTGGCAGCAGAACACAAAAGATCCGGCCACTTCATGTTCCTTCTC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035069.14 |
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| CDS-3UTR CCA 90 bp | AAGGGGCAGAACGAGAATCTGTGGGCAAAGCCATGCCCACTCTCTTACCCACCCCTGTCACCACGCCTCTaGTCCCTGTCAGGGTCCCCT | + |
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Preference number: 4 (lower is better) Translates to: KGQNENLWAKPCPLSYPPLSPRL*SLSGSP Trigger: AGGGGACCCTGACAGGGACCAGAGGCGTGGTGACAG...GGGTGGGTAAGAGAGTGGGCATGGCTTTGCCCACAGATTCTCGTTCTGCCCCTT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000035069.14 |
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| CDS-3UTR CCA 90 bp | AGAAGTACTAGGAAGCCCATGAAAGACATGAGGCCAGGGCAGGCAGCCCTGGGAGCCAAGGTCCGGGTGTaGTCCCTGGCTGGGAATACA | + |
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Preference number: 4 (lower is better) Translates to: RSTRKPMKDMRPGQAALGAKVRV*SLAGNT Trigger: TGTATTCCCAGCCAGGGACCACACCCGGACCTTGGC...TCCCAGGGCTGCCTGCCCTGGCCTCATGTCTTTCATGGGCTTCCTAGTACTTCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035069.14 |
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| CDS-3UTR CCA 90 bp | AGAAGTACTAGGAAGCCCATGAAAGACATGAGGCCAGGGCAGGCAGCCCTGGGACTGCCAGCCCTTGGCTaGCTCACCCATCATCAGGAG | + |
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Preference number: 4 (lower is better) Translates to: RSTRKPMKDMRPGQAALGLPALG*LTHHQE Trigger: CTCCTGATGATGGGTGAGCCAGCCAAGGGCTGGCAG...TCCCAGGGCTGCCTGCCCTGGCCTCATGTCTTTCATGGGCTTCCTAGTACTTCT 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035069.14 |
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| CDS-3UTR GCA 90 bp | CCCTCGCTTCTATCTTGGAGAGGATGGAGAAGGAACATGAAGTGGCCGGATCTTTCCCTGTCCCCGTCCTaGCCCTGCAGGGCTGTATCT | + |
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Preference number: 4 (lower is better) Translates to: PSLLSWRGWRRNMKWPDLSLSPS*PCRAVS Trigger: AGATACAGCCCTGCAGGGGCAGGACGGGGACAGGGA...AAGATCCGGCCACTTCATGTTCCTTCTCCATCCTCTCCAAGATAGAAGCGAGGG 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035069.14 |
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| CDS-3UTR CCA 90 bp | TCCCTCGCTTCTATCTTGGAGAGGATGGAGAAGGAACATGAAGTGGCCGGATCTATAGGGAGGAGGTATTaGGGGCTAGGGCTCCCCCAG | + |
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Preference number: 4 (lower is better) Translates to: SLASILERMEKEHEVAGSIGRRY*GLGLPQ Trigger: CTGGGGGAGCCCTAGCCCCCAATACCTCCTCCCTAT...AGATCCGGCCACTTCATGTTCCTTCTCCATCCTCTCCAAGATAGAAGCGAGGGA 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000035069.14 |
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| CDS-3UTR CCA 90 bp | CCCTCGCTTCTATCTTGGAGAGGATGGAGAAGGAACATGAAGTGGCCGGATCTTATCATCAGGAGCCGCTaGACTTCCTCCTGCTGCTGC | + |
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Preference number: 4 (lower is better) Translates to: PSLLSWRGWRRNMKWPDLIIRSR*TSSCCC Trigger: GCAGCAGCAGGAGGAAGTCCAGCGGCTCCTGATGAT...AAGATCCGGCCACTTCATGTTCCTTCTCCATCCTCTCCAAGATAGAAGCGAGGG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035069.14 |
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| CDS-3UTR CCA 90 bp | AAGGGGCAGAACGAGAATCTGTGGGCAAAGCCATGCCCACTCTCTTACCCACCCTTTGGTCACAGGCCATaGTTTCCACAGCCTCAGCTT | + |
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Preference number: 4 (lower is better) Translates to: KGQNENLWAKPCPLSYPPFGHRP*FPQPQL Trigger: AAGCTGAGGCTGTGGAAACCATGGCCTGTGACCAAA...GGGTGGGTAAGAGAGTGGGCATGGCTTTGCCCACAGATTCTCGTTCTGCCCCTT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035069.14 |
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| CDS-3UTR TCA 90 bp | CCCTCGCTTCTATCTTGGAGAGGATGGAGAAGGAACATGAAGTGGCCGGATCTTCACAGTAGACAGGAATaGTGTTGCTCGAGGCCCCTG | + |
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Preference number: 4 (lower is better) Translates to: PSLLSWRGWRRNMKWPDLHSRQE*CCSRPL Trigger: CAGGGGCCTCGAGCAACATCATTCCTGTCTACTGTG...AAGATCCGGCCACTTCATGTTCCTTCTCCATCCTCTCCAAGATAGAAGCGAGGG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035069.14 |
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| CDS-3UTR GCA 90 bp | AAGGGGCAGAACGAGAATCTGTGGGCAAAGCCATGCCCACTCTCTTACCCACCCGCTTTAGCCAACTGTTaGCTTTGCTTATGTGAGCGC | + |
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Preference number: 4 (lower is better) Translates to: KGQNENLWAKPCPLSYPPALANC*LCLCER Trigger: GCGCTCACATAAGCAAAGGCAACAGTTGGCTAAAGC...GGGTGGGTAAGAGAGTGGGCATGGCTTTGCCCACAGATTCTCGTTCTGCCCCTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035069.14 |
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| CDS-3UTR CCA 90 bp | AAAGGGGCAGAACGAGAATCTGTGGGCAAAGCCATGCCCACTCTCTTACCCACCCTCCTGCTGCTGCTGTaGAATATGCAGGTAAAGCTG | + |
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Preference number: 4 (lower is better) Translates to: KGAERESVGKAMPTLLPTLLLLL*NMQVKL Trigger: CAGCTTTACCTGCATATTCCACAGCAGCAGCAGGAG...GGTGGGTAAGAGAGTGGGCATGGCTTTGCCCACAGATTCTCGTTCTGCCCCTTT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035069.14 |
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| CDS-3UTR GCA 90 bp | CCCATGTCCCTCGCTTCTATCTTGGAGAGGATGGAGAAGGAACATGAAGTGGCCGCCAACTGTTGCCTTTaGTTATGTGAGCGCCAGCAT | + |
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Preference number: 4 (lower is better) Translates to: PMSLASILERMEKEHEVAANCCL*LCERQH Trigger: ATGCTGGCGCTCACATAAGCAAAGGCAACAGTTGGC...GGCCACTTCATGTTCCTTCTCCATCCTCTCCAAGATAGAAGCGAGGGACATGGG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035069.14 |
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| CDS-3UTR CCA 90 bp | TCCCTCGCTTCTATCTTGGAGAGGATGGAGAAGGAACATGAAGTGGCCGGATCTGCTCTATTGCCTTCTTaGGCAGCCCAGTTCCTTAGC | + |
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Preference number: 4 (lower is better) Translates to: SLASILERMEKEHEVAGSALLPS*AAQFLS Trigger: GCTAAGGAACTGGGCTGCCCAAGAAGGCAATAGAGC...AGATCCGGCCACTTCATGTTCCTTCTCCATCCTCTCCAAGATAGAAGCGAGGGA 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035069.14 |
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| CDS-3UTR GCA 90 bp | ATCTTGGAGAGGATGGAGAAGGAACATGAAGTGGCCGGATCTTTTGTGTTCTGCTGGACTTCCTCCTGCTaGTGCTGTGGAATATGCAGG | + |
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Preference number: 4 (lower is better) Translates to: ILERMEKEHEVAGSFVFCWTSSC*CCGICR Trigger: CCTGCATATTCCACAGCAGCAGCAGGAGGAAGTCCA...GCAGAACACAAAAGATCCGGCCACTTCATGTTCCTTCTCCATCCTCTCCAAGAT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035069.14 |
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| CDS CCA 90 bp | AGCTTGGTAGCCGAGGTGGCCTGCCAGCTCCTGCCAGCCCTTGGCTaGCTCACCCATCATCAGGAGCCGCTGGACTTCCTCCTGCTGCTG | + |
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Preference number: 5 (lower is better) Translates to: SLVAEVACQLLPALG*LTHHQEPLDFLLLL Trigger: CAGCAGCAGGAGGAAGTCCAGCGGCTCCTGATGATGGGTGAGCCAGCCAAGGGCTGGCAGGAGCTGGCAGGCCACCTCGGCTACCAAGCT 66% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035069.14 ENSMUST00000196735.2 |
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| CDS CCA 90 bp | AGACTAGGAGGAGAGTCCACGAAGACGTTGCTGTCACCACGCCTCTaGTCCCTGTCAGGGTCCCCTAGCTCTACAGTCCGAGCTTTAGCC | + |
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Preference number: 5 (lower is better) Translates to: RLGGESTKTLLSPRL*SLSGSPSSTVRALA Trigger: GGCTAAAGCTCGGACTGTAGAGCTAGGGGACCCTGACAGGGACCAGAGGCGTGGTGACAGCAACGTCTTCGTGGACTCTCCTCCTAGTCT 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035069.14 ENSMUST00000196735.2 |
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| CDS-3UTR CAA 90 bp | AGAAGTACTAGGAAGCCCATGAAAGACATGAGGCCAGGGCAGGCAGCCCTGGGAGGTATAGGCTGGCATTaGGTCACAGGCCATGGTTTC | + |
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Preference number: 5 (lower is better) Translates to: RSTRKPMKDMRPGQAALGGIGWH*VTGHGF Trigger: GAAACCATGGCCTGTGACCAAATGCCAGCCTATACC...TCCCAGGGCTGCCTGCCCTGGCCTCATGTCTTTCATGGGCTTCCTAGTACTTCT 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000035069.14 |
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| CDS-3UTR CAA 90 bp | ATCTTGGAGAGGATGGAGAAGGAACATGAAGTGGCCGGATCTTTTGTGTTCTGCAATAGGGAGGAGGTATaGGGGGCTAGGGCTCCCCCA | + |
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Preference number: 5 (lower is better) Translates to: ILERMEKEHEVAGSFVFCNREEV*GARAPP Trigger: TGGGGGAGCCCTAGCCCCCAATACCTCCTCCCTATT...GCAGAACACAAAAGATCCGGCCACTTCATGTTCCTTCTCCATCCTCTCCAAGAT 53% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000035069.14 |
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| CDS CAA 72 bp | CAGGGCTCCAGACTAGGAGGAGAGTCCACGAAGACGTaGCTGTCACCACGCCTCTGGTCCCTGTCAGGGTCC | + |
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Preference number: 6 (lower is better) Translates to: QGSRLGGESTKT*LSPRLWSLSGS Trigger: GGACCCTGACAGGGACCAGAGGCGTGGTGACAGCAACGTCTTCGTGGACTCTCCTCCTAGTCTGGAGCCCTG 62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035069.14 ENSMUST00000196735.2 |
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| CDS CCA 72 bp | CAGCCCTTGGCTGGCTCACCCATCATCAGGAGCCGCTaGACTTCCTCCTGCTGCTGCTGTGGAATATGCAGG | + |
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Preference number: 6 (lower is better) Translates to: QPLAGSPIIRSR*TSSCCCCGICR Trigger: CCTGCATATTCCACAGCAGCAGCAGGAGGAAGTCCAGCGGCTCCTGATGATGGGTGAGCCAGCCAAGGGCTG 61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000035069.14 ENSMUST00000196735.2 |
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| CDS CAA 90 bp | CTGGGAATACAGGGCTCCAGACTAGGAGGAGAGTCCACGAAGACGTaGCTGTCACCACGCCTCTGGTCCCTGTCAGGGTCCCCTAGCTCT | + |
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Preference number: 6 (lower is better) Translates to: LGIQGSRLGGESTKT*LSPRLWSLSGSPSS Trigger: AGAGCTAGGGGACCCTGACAGGGACCAGAGGCGTGGTGACAGCAACGTCTTCGTGGACTCTCCTCCTAGTCTGGAGCCCTGTATTCCCAG 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000035069.14 ENSMUST00000196735.2 |
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| CDS CCA 72 bp | ACCACCGAGGAGCTCTCAGCTGGCGAGCTCAAAACCTaGACCACATCTTCTCGGCCTATGGCAGCCAGAGCA | + |
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Preference number: 6 (lower is better) Translates to: TTEELSAGELKT*TTSSRPMAARA Trigger: TGCTCTGGCTGCCATAGGCCGAGAAGATGTGGTCCAGGTTTTGAGCTCGCCAGCTGAGAGCTCCTCGGTGGT 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000035069.14 |
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| CDS GCA 72 bp | TCCCCTAGCTCTACAGTCCGAGCTTTAGCCAACTGTTaGCTTTGCTTATGTGAGCGCCAGCATTTGAAGGCC | + |
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Preference number: 6 (lower is better) Translates to: SPSSTVRALANC*LCLCERQHLKA Trigger: GGCCTTCAAATGCTGGCGCTCACATAAGCAAAGGCAACAGTTGGCTAAAGCTCGGACTGTAGAGCTAGGGGA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000035069.14 ENSMUST00000196735.2 ENSMUST00000196876.2 |
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| CDS TCA 72 bp | GGCCACATAGGCCAGCAGACCAAGGATCACTGTAGCTaGATAGACCACACCTTTGCTGACGTTATAAAGCAT | + |
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Preference number: 6 (lower is better) Translates to: GHIGQQTKDHCS*IDHTFADVIKH Trigger: ATGCTTTATAACGTCAGCAAAGGTGTGGTCTATTCAGCTACAGTGATCCTTGGTCTGCTGGCCTATGTGGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000196876.2 |
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