RADAR | Search for sensor designs | Human genes | Mouse genes | Code

Pregenerated sensors for NR6A1 (Mus musculus)

Ensembl gene IDs: ENSMUSG00000063972

Ensembl transcript IDs: ENSMUST00000076275.11, ENSMUST00000112877.8, ENSMUST00000142113.8, ENSMUST00000142130.2, ENSMUST00000168098.8

Found 441 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).

Type Sensor Details
3UTR CCA 90 bp GCCCGCCAACTATCATTTGGTCATGCAGGGTTGATGGAGCCAGGCTaGCAGGCAGCCCTTGGCCGGCCCTTTGGGAACAAGGGCTCAGAG +
Preference number: 1 (lower is better)
Translates to: ARQLSFGHAGLMEPG*QAALGRPFGNKGSE
Trigger: CTCTGAGCCCTTGTTCCCAAAGGGCCGGCCAAGGGCTGCCTGCCAGCCTGGCTCCATCAACCCTGCATGACCAAATGATAGTTGGCGGGC
62% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR GCA 90 bp TCACAGACACTGCATGAGGAGAAGGGAGGAGGATGGACGGCAGAGTaGGGGCGGGCATTCCCACAGACCAAGGTGGGGGAGTCACTGAGT +
Preference number: 1 (lower is better)
Translates to: SQTLHEEKGGGWTAE*GRAFPQTKVGESLS
Trigger: ACTCAGTGACTCCCCCACCTTGGTCTGTGGGAATGCCCGCCCGCACTCTGCCGTCCATCCTCCTCCCTTCTCCTCATGCAGTGTCTGTGA
61% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CCA 90 bp GGTAGCTGCTCCACAGTCTCCATCTTGGTCTCTGGCTCTTTCCTCTaGAGCCTGTGCTGCCTACCCAAGGCACTGTGGGTGGCCCAAGGA +
Preference number: 1 (lower is better)
Translates to: GSCSTVSILVSGSFL*SLCCLPKALWVAQG
Trigger: TCCTTGGGCCACCCACAGTGCCTTGGGTAGGCAGCACAGGCTCCAGAGGAAAGAGCCAGAGACCAAGATGGAGACTGTGGAGCAGCTACC
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CCA 90 bp CCTGCTTCCCTCTACCCTAGAGACCTGTCTCCTTCACTTGTAGGTTaGCCCTGGGGACTGGGTGTCCGGACCCAGGTAGAGTGCTTTGAG +
Preference number: 1 (lower is better)
Translates to: PASLYPRDLSPSLVG*PWGLGVRTQVECFE
Trigger: CTCAAAGCACTCTACCTGGGTCCGGACACCCAGTCCCCAGGGCCAACCTACAAGTGAAGGAGACAGGTCTCTAGGGTAGAGGGAAGCAGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CCA 90 bp ATTTGGTCATGCAGGGTTGATGGAGCCAGGCTGGCAGGCAGCCCTTaGCCGGCCCTTTGGGAACAAGGGCTCAGAGACATCCATTCATTC +
Preference number: 1 (lower is better)
Translates to: IWSCRVDGARLAGSP*PALWEQGLRDIHSF
Trigger: GAATGAATGGATGTCTCTGAGCCCTTGTTCCCAAAGGGCCGGCCAAGGGCTGCCTGCCAGCCTGGCTCCATCAACCCTGCATGACCAAAT
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CCA 90 bp AAGGCGGTCCACAGGTCAGGCTCCAGCTCGGAACACACAGCCACTTaGCTCAGAGATTCTGCAGGGCTCTTGGCAATGAATGGGCTCTTT +
Preference number: 1 (lower is better)
Translates to: KAVHRSGSSSEHTAT*LRDSAGLLAMNGLF
Trigger: AAAGAGCCCATTCATTGCCAAGAGCCCTGCAGAATCTCTGAGCCAAGTGGCTGTGTGTTCCGAGCTGGAGCCTGACCTGTGGACCGCCTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR TCA 90 bp GTTCAGTGGCCTGGGGCTGCTCACTCAGAGGAAGTTGTCAGGGTCTaGCTCCAAGTCCAGGAAAGATGCTACTTGTGGCAGCCAAGAGAG +
Preference number: 1 (lower is better)
Translates to: VQWPGAAHSEEVVRV*LQVQERCYLWQPRE
Trigger: CTCTCTTGGCTGCCACAAGTAGCATCTTTCCTGGACTTGGAGTCAGACCCTGACAACTTCCTCTGAGTGAGCAGCCCCAGGCCACTGAAC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR TCA 90 bp GGGTGGAGGCCTCTTCTAGCGATGGCTTGTCCCTATTTGGGCAGGTaGAAAGGACTCCCCAGACACTGCCCAGACATTACAATACAGCCA +
Preference number: 1 (lower is better)
Translates to: GWRPLLAMACPYLGR*KGLPRHCPDITIQP
Trigger: TGGCTGTATTGTAATGTCTGGGCAGTGTCTGGGGAGTCCTTTTCACCTGCCCAAATAGGGACAAGCCATCGCTAGAAGAGGCCTCCACCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR GCA 90 bp CTTGTAGGTTGGCCCTGGGGACTGGGTGTCCGGACCCAGGTAGAGTaGTTTGAGAGGAGTTGTAGGGAATTTCATCGAACTAAGGGTGAG +
Preference number: 1 (lower is better)
Translates to: LVGWPWGLGVRTQVE*FERSCREFHRTKGE
Trigger: CTCACCCTTAGTTCGATGAAATTCCCTACAACTCCTCTCAAAGCACTCTACCTGGGTCCGGACACCCAGTCCCCAGGGCCAACCTACAAG
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR GCA 90 bp AAGACGGTCAAAAGTCTTGAGGAAGCCCAGACCCATAGGCAAGCTTaGGTTCAGTTCAGTGGCCTGGGGCTGCTCACTCAGAGGAAGTTG +
Preference number: 1 (lower is better)
Translates to: KTVKSLEEAQTHRQA*VQFSGLGLLTQRKL
Trigger: CAACTTCCTCTGAGTGAGCAGCCCCAGGCCACTGAACTGAACGCAAGCTTGCCTATGGGTCTGGGCTTCCTCAAGACTTTTGACCGTCTT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR TCA 90 bp ATACACATCCCTGAGCTGTGGTCCCAGAAGTGCCTGCTTCAAGGCTaGCCAGTTTCCAGCACCTGGTGGGATGATTGCCGTTTTTCATCC +
Preference number: 1 (lower is better)
Translates to: IHIPELWSQKCLLQG*PVSSTWWDDCRFSS
Trigger: GGATGAAAAACGGCAATCATCCCACCAGGTGCTGGAAACTGGTCAGCCTTGAAGCAGGCACTTCTGGGACCACAGCTCAGGGATGTGTAT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR GCA 90 bp GTCAGGCTCCAGCTCGGAACACACAGCCACTTGGCTCAGAGATTCTaGAGGGCTCTTGGCAATGAATGGGCTCTTTGTTCTGTGGAATCT +
Preference number: 1 (lower is better)
Translates to: VRLQLGTHSHLAQRF*RALGNEWALCSVES
Trigger: AGATTCCACAGAACAAAGAGCCCATTCATTGCCAAGAGCCCTGCAGAATCTCTGAGCCAAGTGGCTGTGTGTTCCGAGCTGGAGCCTGAC
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR GCA 90 bp CCTGTAATTAAATACACATCCCTGAGCTGTGGTCCCAGAAGTGCCTaGTTCAAGGCTGACCAGTTTCCAGCACCTGGTGGGATGATTGCC +
Preference number: 1 (lower is better)
Translates to: PVIKYTSLSCGPRSA*FKADQFPAPGGMIA
Trigger: GGCAATCATCCCACCAGGTGCTGGAAACTGGTCAGCCTTGAAGCAGGCACTTCTGGGACCACAGCTCAGGGATGTGTATTTAATTACAGG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CCA 90 bp AGGTTCATGATGCACTTGCCATCAGAGTCCCTGAAATCCAAGCTATaGAGCATAGGAAGGGGGTGGAGGCCTCTTCTAGCGATGGCTTGT +
Preference number: 1 (lower is better)
Translates to: RFMMHLPSESLKSKL*SIGRGWRPLLAMAC
Trigger: ACAAGCCATCGCTAGAAGAGGCCTCCACCCCCTTCCTATGCTCCATAGCTTGGATTTCAGGGACTCTGATGGCAAGTGCATCATGAACCT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR TCA 90 bp GCAGCAGAAGGTAAGGCAGAGTTTCTGCCCTTCAGGCTTGTGGGATaGGATGATCAAAATCAAATTGCCTCTCAGATGTCCCACTGGCCA +
Preference number: 1 (lower is better)
Translates to: AAEGKAEFLPFRLVG*DDQNQIASQMSHWP
Trigger: TGGCCAGTGGGACATCTGAGAGGCAATTTGATTTTGATCATCTCATCCCACAAGCCTGAAGGGCAGAAACTCTGCCTTACCTTCTGCTGC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CCA 90 bp ACTGCCCAGACATTACAATACAGCCACAAGCTCCTATCACAGGCCTaGGATGGCAACACAGACAAAAACACAACAGTCCAGGGTTTCATT +
Preference number: 1 (lower is better)
Translates to: TAQTLQYSHKLLSQA*DGNTDKNTTVQGFI
Trigger: AATGAAACCCTGGACTGTTGTGTTTTTGTCTGTGTTGCCATCCCAGGCCTGTGATAGGAGCTTGTGGCTGTATTGTAATGTCTGGGCAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR TCA 90 bp AAGTCTAAGCAAAGAAGGCTGCTGTGTGCACAGAGGTGCTGTCTCTaGACTGTGTCTCTGATTTCTAGCTTGAGGAAAGCAGCTGAGAAT +
Preference number: 1 (lower is better)
Translates to: KSKQRRLLCAQRCCL*TVSLISSLRKAAEN
Trigger: ATTCTCAGCTGCTTTCCTCAAGCTAGAAATCAGAGACACAGTTCAGAGACAGCACCTCTGTGCACACAGCAGCCTTCTTTGCTTAGACTT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CCA 90 bp GGAAGAGCTGGGCTTCTCTGGGTCTTGACTTTCTGTTCTAGACCCTaGCAAACAAATCTCATTTTGGGACTAATGGGAGAACTTACAACA +
Preference number: 1 (lower is better)
Translates to: GRAGLLWVLTFCSRP*QTNLILGLMGELTT
Trigger: TGTTGTAAGTTCTCCCATTAGTCCCAAAATGAGATTTGTTTGCCAGGGTCTAGAACAGAAAGTCAAGACCCAGAGAAGCCCAGCTCTTCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CCA 90 bp CACAGCCACTTGGCTCAGAGATTCTGCAGGGCTCTTGGCAATGAATaGGCTCTTTGTTCTGTGGAATCTGCTGCAAACATTTGTAAAAAT +
Preference number: 1 (lower is better)
Translates to: HSHLAQRFCRALGNE*ALCSVESAANICKN
Trigger: ATTTTTACAAATGTTTGCAGCAGATTCCACAGAACAAAGAGCCCATTCATTGCCAAGAGCCCTGCAGAATCTCTGAGCCAAGTGGCTGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR TCA 90 bp TTTCTCTGTGTCCTTCAAACCAAAATCACAAATACATCTAGTGGCTaGCCTAATGTCTCCACGCTGCTAGCTACACTCCTACCTTCTCCT +
Preference number: 1 (lower is better)
Translates to: FLCVLQTKITNTSSG*PNVSTLLATLLPSP
Trigger: AGGAGAAGGTAGGAGTGTAGCTAGCAGCGTGGAGACATTAGGTCAGCCACTAGATGTATTTGTGATTTTGGTTTGAAGGACACAGAGAAA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR TCA 90 bp GTGGCAGTTTTGGATTTTGGATTTGGTTCAGAGGATAAGGTTGGGTaGGAACAGCGACTTCCAAAGAAGTCTTTATTCTTTCAGCAGCCT +
Preference number: 1 (lower is better)
Translates to: VAVLDFGFGSEDKVG*EQRLPKKSLFFQQP
Trigger: AGGCTGCTGAAAGAATAAAGACTTCTTTGGAAGTCGCTGTTCTCACCCAACCTTATCCTCTGAACCAAATCCAAAATCCAAAACTGCCAC
43% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR TCA 90 bp TTGTCACTTTGCTGGTACCTGTATCATTTCACTAAAGAGAAAAACTaGCAAATGGAGGCACTACCTAGGAGGCACAGGATGCTGTTGTCT +
Preference number: 1 (lower is better)
Translates to: LSLCWYLYHFTKEKN*QMEALPRRHRMLLS
Trigger: AGACAACAGCATCCTGTGCCTCCTAGGTAGTGCCTCCATTTGTCAGTTTTTCTCTTTAGTGAAATGATACAGGTACCAGCAAAGTGACAA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR GCA 90 bp AGTTGTAGGGAATTTCATCGAACTAAGGGTGAGACTACCAAACCTTaGAAAGGACAAAAATGGCCTTTAAAGGGAGCCAGAGAACAGGAA +
Preference number: 1 (lower is better)
Translates to: SCREFHRTKGETTKP*KGQKWPLKGAREQE
Trigger: TTCCTGTTCTCTGGCTCCCTTTAAAGGCCATTTTTGTCCTTTGCAAGGTTTGGTAGTCTCACCCTTAGTTCGATGAAATTCCCTACAACT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR TCA 90 bp GAGCTCAGAAACAGACACATCAATACATATATCTTCCCACAAACGTaGAAAACATTCTATCTGGAACTTTTTCTCTCTCAAGTGGCTGGG +
Preference number: 1 (lower is better)
Translates to: ELRNRHINTYIFPQT*KTFYLELFLSQVAG
Trigger: CCCAGCCACTTGAGAGAGAAAAAGTTCCAGATAGAATGTTTTTCACGTTTGTGGGAAGATATATGTATTGATGTGTCTGTTTCTGAGCTC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp GGACAGGGAGGTTCCTGCCTGCTTCCCTCTACCCTAGAGACCTGTCTCCTTCACTCTGGCTCTTTCCTCTaGAGCCTGTGCTGCCTACCC +
Preference number: 2 (lower is better)
Translates to: GQGGSCLLPSTLETCLLHSGSFL*SLCCLP
Trigger: GGGTAGGCAGCACAGGCTCCAGAGGAAAGAGCCAGA...GTGAAGGAGACAGGTCTCTAGGGTAGAGGGAAGCAGGCAGGAACCTCCCTGTCC
59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp ATGGACGGCAGAGTGCGGGCGGGCATTCCCACAGACCAAGGTGGGGGAGTCACTGGTCTGGCCAAAGTCTaGAGGGTAAAAACTCTTCCT +
Preference number: 2 (lower is better)
Translates to: MDGRVRAGIPTDQGGGVTGLAKV*RVKTLP
Trigger: AGGAAGAGTTTTTACCCTCCAGACTTTGGCCAGACC...AGTGACTCCCCCACCTTGGTCTGTGGGAATGCCCGCCCGCACTCTGCCGTCCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CAA 90 bp AAAGGCGGTCCACAGGTCAGGCTCCAGCTCGGAACACACAGCCACTaGGCTCAGAGATTCTGCAGGGCTCTTGGCAATGAATGGGCTCTT +
Preference number: 2 (lower is better)
Translates to: KGGPQVRLQLGTHSH*AQRFCRALGNEWAL
Trigger: AAGAGCCCATTCATTGCCAAGAGCCCTGCAGAATCTCTGAGCCAAGTGGCTGTGTGTTCCGAGCTGGAGCCTGACCTGTGGACCGCCTTT
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp CACAACAGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTGGATGGACGGCAGAGTaGGGGCGGGCATTCCCACAG +
Preference number: 2 (lower is better)
Translates to: HNSPGFHSRQKHVNSTGAGWTAE*GRAFPQ
Trigger: CTGTGGGAATGCCCGCCCGCACTCTGCCGTCCATCC...AGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACTGTTGTG
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp GGACAGGGAGGTTCCTGCCTGCTTCCCTCTACCCTAGAGACCTGTCTCCTTCACGAACACACAGCCACTTaGCTCAGAGATTCTGCAGGG +
Preference number: 2 (lower is better)
Translates to: GQGGSCLLPSTLETCLLHEHTAT*LRDSAG
Trigger: CCCTGCAGAATCTCTGAGCCAAGTGGCTGTGTGTTC...GTGAAGGAGACAGGTCTCTAGGGTAGAGGGAAGCAGGCAGGAACCTCCCTGTCC
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CAA 90 bp GCTTGCGTTCAGTTCAGTGGCCTGGGGCTGCTCACTCAGAGGAAGTaGTCAGGGTCTGACTCCAAGTCCAGGAAAGATGCTACTTGTGGC +
Preference number: 2 (lower is better)
Translates to: ACVQFSGLGLLTQRK*SGSDSKSRKDATCG
Trigger: GCCACAAGTAGCATCTTTCCTGGACTTGGAGTCAGACCCTGACAACTTCCTCTGAGTGAGCAGCCCCAGGCCACTGAACTGAACGCAAGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp GGACAGGGAGGTTCCTGCCTGCTTCCCTCTACCCTAGAGACCTGTCTCCTTCACGAGGATAAGGTTGGGTaGGAACAGCGACTTCCAAAG +
Preference number: 2 (lower is better)
Translates to: GQGGSCLLPSTLETCLLHEDKVG*EQRLPK
Trigger: CTTTGGAAGTCGCTGTTCTCACCCAACCTTATCCTC...GTGAAGGAGACAGGTCTCTAGGGTAGAGGGAAGCAGGCAGGAACCTCCCTGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp AGCTACAGTATTCTTTTCCCACAGGACTCCTCAGAGAGGAATCGACCAGGATGTCCAAGGCACTGTGGGTaGCCCAAGGAGGTGCAGGGC +
Preference number: 2 (lower is better)
Translates to: SYSILFPQDSSERNRPGCPRHCG*PKEVQG
Trigger: GCCCTGCACCTCCTTGGGCCACCCACAGTGCCTTGG...ACATCCTGGTCGATTCCTCTCTGAGGAGTCCTGTGGGAAAAGAATACTGTAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp ATGGACGGCAGAGTGCGGGCGGGCATTCCCACAGACCAAGGTGGGGGAGTCACTGTTAATAGGCTTCACTaGGGAAGTGTAAACAGTTCC +
Preference number: 2 (lower is better)
Translates to: MDGRVRAGIPTDQGGGVTVNRLH*GSVNSS
Trigger: GGAACTGTTTACACTTCCCCAGTGAAGCCTATTAAC...AGTGACTCCCCCACCTTGGTCTGTGGGAATGCCCGCCCGCACTCTGCCGTCCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp AGCTACAGTATTCTTTTCCCACAGGACTCCTCAGAGAGGAATCGACCAGGATGTGAGAAGGGAGGAGGATaGACGGCAGAGTGCGGGCGG +
Preference number: 2 (lower is better)
Translates to: SYSILFPQDSSERNRPGCEKGGG*TAECGR
Trigger: CCGCCCGCACTCTGCCGTCCATCCTCCTCCCTTCTC...ACATCCTGGTCGATTCCTCTCTGAGGAGTCCTGTGGGAAAAGAATACTGTAGCT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp GGACAGGGAGGTTCCTGCCTGCTTCCCTCTACCCTAGAGACCTGTCTCCTTCACAGGACTCTACCTGGATaGAAACTTGACAGCAGCATC +
Preference number: 2 (lower is better)
Translates to: GQGGSCLLPSTLETCLLHRTLPG*KLDSSI
Trigger: GATGCTGCTGTCAAGTTTTCATCCAGGTAGAGTCCT...GTGAAGGAGACAGGTCTCTAGGGTAGAGGGAAGCAGGCAGGAACCTCCCTGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp GCCTCTTCTAGCGATGGCTTGTCCCTATTTGGGCAGGTGAAAAGGACTCCCCAGTTCACAGACACTGCATaGGGAGAAGGGAGGAGGATG +
Preference number: 2 (lower is better)
Translates to: ASSSDGLSLFGQVKRTPQFTDTA*GEGRRM
Trigger: CATCCTCCTCCCTTCTCCTCATGCAGTGTCTGTGAA...CTGGGGAGTCCTTTTCACCTGCCCAAATAGGGACAAGCCATCGCTAGAAGAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp CATCAACAGACAACAGCGTGTGGGGGAGGGGTGCAGCAGAAGGTAAGGCAGAGTTGTGATGGAGGTAGCTaGTCCACAGTCTCCATCTTG +
Preference number: 2 (lower is better)
Translates to: HQQTTACGGGVQQKVRQSCDGGS*STVSIL
Trigger: CAAGATGGAGACTGTGGAGCAGCTACCTCCATCACA...ACTCTGCCTTACCTTCTGCTGCACCCCTCCCCCACACGCTGTTGTCTGTTGATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp GCCTCTTCTAGCGATGGCTTGTCCCTATTTGGGCAGGTGAAAAGGACTCCCCAGAAGAAGGCTGCTGTGTaGACAGAGGTGCTGTCTCTG +
Preference number: 2 (lower is better)
Translates to: ASSSDGLSLFGQVKRTPQKKAAV*TEVLSL
Trigger: CAGAGACAGCACCTCTGTGCACACAGCAGCCTTCTT...CTGGGGAGTCCTTTTCACCTGCCCAAATAGGGACAAGCCATCGCTAGAAGAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp CGGGCATTCCCACAGACCAAGGTGGGGGAGTCACTGAGTGCGCTTGCTTTCTTTCTAAGCAAAGAAGGCTaGTGTGTGCACAGAGGTGCT +
Preference number: 2 (lower is better)
Translates to: RAFPQTKVGESLSALAFFLSKEG*CVHRGA
Trigger: AGCACCTCTGTGCACACAGCAGCCTTCTTTGCTTAG...AAAGAAAGCAAGCGCACTCAGTGACTCCCCCACCTTGGTCTGTGGGAATGCCCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp GCCTCTTCTAGCGATGGCTTGTCCCTATTTGGGCAGGTGAAAAGGACTCCCCAGCGGACCCAGGTAGAGTaGTTTGAGAGGAGTTGTAGG +
Preference number: 2 (lower is better)
Translates to: ASSSDGLSLFGQVKRTPQRTQVE*FERSCR
Trigger: CCTACAACTCCTCTCAAAGCACTCTACCTGGGTCCG...CTGGGGAGTCCTTTTCACCTGCCCAAATAGGGACAAGCCATCGCTAGAAGAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp GCCTCTTCTAGCGATGGCTTGTCCCTATTTGGGCAGGTGAAAAGGACTCCCCAGGAACACACAGCCACTTaGCTCAGAGATTCTGCAGGG +
Preference number: 2 (lower is better)
Translates to: ASSSDGLSLFGQVKRTPQEHTAT*LRDSAG
Trigger: CCCTGCAGAATCTCTGAGCCAAGTGGCTGTGTGTTC...CTGGGGAGTCCTTTTCACCTGCCCAAATAGGGACAAGCCATCGCTAGAAGAGGC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp CACAACAGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTTGCCTGCTTCAAGGCTaGCCAGTTTCCAGCACCTGG +
Preference number: 2 (lower is better)
Translates to: HNSPGFHSRQKHVNSTGACLLQG*PVSSTW
Trigger: CCAGGTGCTGGAAACTGGTCAGCCTTGAAGCAGGCA...AGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACTGTTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp AGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTACAGTACTCTGGAGCCTGTGCTaGCTACCCAAGGCACTGTGG +
Preference number: 2 (lower is better)
Translates to: SPGFHSRQKHVNSTGATVLWSLC*LPKALW
Trigger: CCACAGTGCCTTGGGTAGGCAGCACAGGCTCCAGAG...TACTGTAGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp CAAGGAGGTGGGCTCTCCTTCTCCACATGGCTTTGGGGGCTATATGTTTTTATGTTCCTCTGGAGCCTGTaGTGCCTACCCAAGGCACTG +
Preference number: 2 (lower is better)
Translates to: QGGGLSFSTWLWGLYVFMFLWSL*CLPKAL
Trigger: CAGTGCCTTGGGTAGGCAGCACAGGCTCCAGAGGAA...CATAAAAACATATAGCCCCCAAAGCCATGTGGAGAAGGAGAGCCCACCTCCTTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp CACAACAGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTTTCCTCTGGAGCCTGTaGTGCCTACCCAAGGCACTG +
Preference number: 2 (lower is better)
Translates to: HNSPGFHSRQKHVNSTGAFLWSL*CLPKAL
Trigger: CAGTGCCTTGGGTAGGCAGCACAGGCTCCAGAGGAA...AGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACTGTTGTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp CAATACAGCCACAAGCTCCTATCACAGGCCTGGGATGGCAACACAGACAAAAACGGACAGGGAGGTTCCTaGCTGCTTCCCTCTACCCTA +
Preference number: 2 (lower is better)
Translates to: QYSHKLLSQAWDGNTDKNGQGGS*LLPSTL
Trigger: TAGGGTAGAGGGAAGCAGGCAGGAACCTCCCTGTCC...GTTTTTGTCTGTGTTGCCATCCCAGGCCTGTGATAGGAGCTTGTGGCTGTATTG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp TGGAGGCACTACCTAGGAGGCACAGGATGCTGTTGTCTCCAGGGTAAGTTAATAACAGACAACAGCGTGTaGGGGAGGGGTGCAGCAGAA +
Preference number: 2 (lower is better)
Translates to: WRHYLGGTGCCCLQGKLITDNSV*GRGAAE
Trigger: TTCTGCTGCACCCCTCCCCCACACGCTGTTGTCTGT...TATTAACTTACCCTGGAGACAACAGCATCCTGTGCCTCCTAGGTAGTGCCTCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp CGGGCATTCCCACAGACCAAGGTGGGGGAGTCACTGAGTGCGCTTGCTTTCTTTCTTTCTAGGTCTTTCTaGCTCCATCCCTCCAAACCT +
Preference number: 2 (lower is better)
Translates to: RAFPQTKVGESLSALAFFLSRSF*LHPSKP
Trigger: AGGTTTGGAGGGATGGAGCCAGAAAGACCTAGAAAG...AAAGAAAGCAAGCGCACTCAGTGACTCCCCCACCTTGGTCTGTGGGAATGCCCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp CACAACAGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTCCTTCACTTGTAGGTTaGCCCTGGGGACTGGGTGTC +
Preference number: 2 (lower is better)
Translates to: HNSPGFHSRQKHVNSTGAPSLVG*PWGLGV
Trigger: GACACCCAGTCCCCAGGGCCAACCTACAAGTGAAGG...AGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACTGTTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CAA 90 bp ACAAATTCTTCTTGTGATGGAGGTAGCTGCTCCACAGTCTCCATCTaGGTCTCTGGCTCTTTCCTCTGGAGCCTGTGCTGCCTACCCAAG +
Preference number: 2 (lower is better)
Translates to: TNSSCDGGSCSTVSI*VSGSFLWSLCCLPK
Trigger: CTTGGGTAGGCAGCACAGGCTCCAGAGGAAAGAGCCAGAGACCAAGATGGAGACTGTGGAGCAGCTACCTCCATCACAAGAAGAATTTGT
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp GCCTCTTCTAGCGATGGCTTGTCCCTATTTGGGCAGGTGAAAAGGACTCCCCAGAGGACTCTACCTGGATaGAAACTTGACAGCAGCATC +
Preference number: 2 (lower is better)
Translates to: ASSSDGLSLFGQVKRTPQRTLPG*KLDSSI
Trigger: GATGCTGCTGTCAAGTTTTCATCCAGGTAGAGTCCT...CTGGGGAGTCCTTTTCACCTGCCCAAATAGGGACAAGCCATCGCTAGAAGAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp GGACAGGGAGGTTCCTGCCTGCTTCCCTCTACCCTAGAGACCTGTCTCCTTCACGCAAGGAAATGCATCTaGTGCATTCACACAAAAGCA +
Preference number: 2 (lower is better)
Translates to: GQGGSCLLPSTLETCLLHARKCI*CIHTKA
Trigger: TGCTTTTGTGTGAATGCAGCAGATGCATTTCCTTGC...GTGAAGGAGACAGGTCTCTAGGGTAGAGGGAAGCAGGCAGGAACCTCCCTGTCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp GGACAGGGAGGTTCCTGCCTGCTTCCCTCTACCCTAGAGACCTGTCTCCTTCACGAGACTACCAAACCTTaGAAAGGACAAAAATGGCCT +
Preference number: 2 (lower is better)
Translates to: GQGGSCLLPSTLETCLLHETTKP*KGQKWP
Trigger: AGGCCATTTTTGTCCTTTGCAAGGTTTGGTAGTCTC...GTGAAGGAGACAGGTCTCTAGGGTAGAGGGAAGCAGGCAGGAACCTCCCTGTCC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp GGGAGCTACAGTATTCTTTTCCCACAGGACTCCTCAGAGAGGAATCGACCAGGACGGACCCAGGTAGAGTaGTTTGAGAGGAGTTGTAGG +
Preference number: 2 (lower is better)
Translates to: GSYSILFPQDSSERNRPGRTQVE*FERSCR
Trigger: CCTACAACTCCTCTCAAAGCACTCTACCTGGGTCCG...TCCTGGTCGATTCCTCTCTGAGGAGTCCTGTGGGAAAAGAATACTGTAGCTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp ACTAAGGGTGAGACTACCAAACCTTGCAAAGGACAAAAATGGCCTTTAAAGGGACCAAGGCACTGTGGGTaGCCCAAGGAGGTGCAGGGC +
Preference number: 2 (lower is better)
Translates to: TKGETTKPCKGQKWPLKGPRHCG*PKEVQG
Trigger: GCCCTGCACCTCCTTGGGCCACCCACAGTGCCTTGG...TCCCTTTAAAGGCCATTTTTGTCCTTTGCAAGGTTTGGTAGTCTCACCCTTAGT
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp GCCTCTTCTAGCGATGGCTTGTCCCTATTTGGGCAGGTGAAAAGGACTCCCCAGCTTTCTAGGTCTTTCTaGCTCCATCCCTCCAAACCT +
Preference number: 2 (lower is better)
Translates to: ASSSDGLSLFGQVKRTPQLSRSF*LHPSKP
Trigger: AGGTTTGGAGGGATGGAGCCAGAAAGACCTAGAAAG...CTGGGGAGTCCTTTTCACCTGCCCAAATAGGGACAAGCCATCGCTAGAAGAGGC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp CGGGCATTCCCACAGACCAAGGTGGGGGAGTCACTGAGTGCGCTTGCTTTCTTTGCTCTTGGCAATGAATaGGCTCTTTGTTCTGTGGAA +
Preference number: 2 (lower is better)
Translates to: RAFPQTKVGESLSALAFFALGNE*ALCSVE
Trigger: TTCCACAGAACAAAGAGCCCATTCATTGCCAAGAGC...AAAGAAAGCAAGCGCACTCAGTGACTCCCCCACCTTGGTCTGTGGGAATGCCCG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp CAATACAGCCACAAGCTCCTATCACAGGCCTGGGATGGCAACACAGACAAAAACCACAGTGCAAGGAGGTaGGCTCTCCTTCTCCACATG +
Preference number: 2 (lower is better)
Translates to: QYSHKLLSQAWDGNTDKNHSARR*ALLLHM
Trigger: CATGTGGAGAAGGAGAGCCCACCTCCTTGCACTGTG...GTTTTTGTCTGTGTTGCCATCCCAGGCCTGTGATAGGAGCTTGTGGCTGTATTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp CAATACAGCCACAAGCTCCTATCACAGGCCTGGGATGGCAACACAGACAAAAACCACATCCCTGAGCTGTaGTCCCAGAAGTGCCTGCTT +
Preference number: 2 (lower is better)
Translates to: QYSHKLLSQAWDGNTDKNHIPEL*SQKCLL
Trigger: AAGCAGGCACTTCTGGGACCACAGCTCAGGGATGTG...GTTTTTGTCTGTGTTGCCATCCCAGGCCTGTGATAGGAGCTTGTGGCTGTATTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp CAATACAGCCACAAGCTCCTATCACAGGCCTGGGATGGCAACACAGACAAAAACTTCAGTTCAGTGGCCTaGGGCTGCTCACTCAGAGGA +
Preference number: 2 (lower is better)
Translates to: QYSHKLLSQAWDGNTDKNFSSVA*GCSLRG
Trigger: TCCTCTGAGTGAGCAGCCCCAGGCCACTGAACTGAA...GTTTTTGTCTGTGTTGCCATCCCAGGCCTGTGATAGGAGCTTGTGGCTGTATTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp GCCTCTTCTAGCGATGGCTTGTCCCTATTTGGGCAGGTGAAAAGGACTCCCCAGGCATGTGCATCATGTTaGAGGCCATACATTCAACTC +
Preference number: 2 (lower is better)
Translates to: ASSSDGLSLFGQVKRTPQACASC*RPYIQL
Trigger: GAGTTGAATGTATGGCCTTCAACATGATGCACATGC...CTGGGGAGTCCTTTTCACCTGCCCAAATAGGGACAAGCCATCGCTAGAAGAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp GCCTCTTCTAGCGATGGCTTGTCCCTATTTGGGCAGGTGAAAAGGACTCCCCAGATCCCTGATAATACTTaGAGGAAGAGCTGGGCTTCT +
Preference number: 2 (lower is better)
Translates to: ASSSDGLSLFGQVKRTPQIPDNT*RKSWAS
Trigger: AGAAGCCCAGCTCTTCCTTCAAGTATTATCAGGGAT...CTGGGGAGTCCTTTTCACCTGCCCAAATAGGGACAAGCCATCGCTAGAAGAGGC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp GGACAGGGAGGTTCCTGCCTGCTTCCCTCTACCCTAGAGACCTGTCTCCTTCACACTAAAGAGAAAAACTaGCAAATGGAGGCACTACCT +
Preference number: 2 (lower is better)
Translates to: GQGGSCLLPSTLETCLLHTKEKN*QMEALP
Trigger: AGGTAGTGCCTCCATTTGTCAGTTTTTCTCTTTAGT...GTGAAGGAGACAGGTCTCTAGGGTAGAGGGAAGCAGGCAGGAACCTCCCTGTCC
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp AGTAGCACATTTTTCTTGGGTTTGGAGCAGGCCTTAGCCTTTCCCACAGCTTCCCTTGAGGAAAGCAGCTaGGAATCTGACCCAGAGCCA +
Preference number: 2 (lower is better)
Translates to: SSTFFLGLEQALAFPTASLEESS*ESDPEP
Trigger: TGGCTCTGGGTCAGATTCTCAGCTGCTTTCCTCAAG...GGAAGCTGTGGGAAAGGCTAAGGCCTGCTCCAAACCCAAGAAAAATGTGCTACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp GGGAGCTACAGTATTCTTTTCCCACAGGACTCCTCAGAGAGGAATCGACCAGGACAGGGCTCTTGGCAATaGATGGGCTCTTTGTTCTGT +
Preference number: 2 (lower is better)
Translates to: GSYSILFPQDSSERNRPGQGSWQ*MGSLFC
Trigger: ACAGAACAAAGAGCCCATTCATTGCCAAGAGCCCTG...TCCTGGTCGATTCCTCTCTGAGGAGTCCTGTGGGAAAAGAATACTGTAGCTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp CCTTTAAAGGGAGCCAGAGAACAGGAATTACAAAGCTCTAAGACTCCACACTTCCTCTGGAGCCTGTGCTaGCTACCCAAGGCACTGTGG +
Preference number: 2 (lower is better)
Translates to: PLKGAREQELQSSKTPHFLWSLC*LPKALW
Trigger: CCACAGTGCCTTGGGTAGGCAGCACAGGCTCCAGAG...GAAGTGTGGAGTCTTAGAGCTTTGTAATTCCTGTTCTCTGGCTCCCTTTAAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp CACAACAGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTAAGAAGGCTGCTGTGTaGACAGAGGTGCTGTCTCTG +
Preference number: 2 (lower is better)
Translates to: HNSPGFHSRQKHVNSTGAKKAAV*TEVLSL
Trigger: CAGAGACAGCACCTCTGTGCACACAGCAGCCTTCTT...AGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACTGTTGTG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp AGTAGCACATTTTTCTTGGGTTTGGAGCAGGCCTTAGCCTTTCCCACAGCTTCCGGTCCCAGAAGTGCCTaGTTCAAGGCTGACCAGTTT +
Preference number: 2 (lower is better)
Translates to: SSTFFLGLEQALAFPTASGPRSA*FKADQF
Trigger: AAACTGGTCAGCCTTGAAGCAGGCACTTCTGGGACC...GGAAGCTGTGGGAAAGGCTAAGGCCTGCTCCAAACCCAAGAAAAATGTGCTACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp TGGCCTTTAAAGGGAGCCAGAGAACAGGAATTACAAAGCTCTAAGACTCCACACACAGACAACAGCGTGTaGGGGAGGGGTGCAGCAGAA +
Preference number: 2 (lower is better)
Translates to: WPLKGAREQELQSSKTPHTDNSV*GRGAAE
Trigger: TTCTGCTGCACCCCTCCCCCACACGCTGTTGTCTGT...GTGTGGAGTCTTAGAGCTTTGTAATTCCTGTTCTCTGGCTCCCTTTAAAGGCCA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp AGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTACAGTACACAGTGCAAGGAGGTaGGCTCTCCTTCTCCACATG +
Preference number: 2 (lower is better)
Translates to: SPGFHSRQKHVNSTGATVHSARR*ALLLHM
Trigger: CATGTGGAGAAGGAGAGCCCACCTCCTTGCACTGTG...TACTGTAGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp CGGGCATTCCCACAGACCAAGGTGGGGGAGTCACTGAGTGCGCTTGCTTTCTTTTGCAAAGGACAAAAATaGCCTTTAAAGGGAGCCAGA +
Preference number: 2 (lower is better)
Translates to: RAFPQTKVGESLSALAFFCKGQK*PLKGAR
Trigger: TCTGGCTCCCTTTAAAGGCCATTTTTGTCCTTTGCA...AAAGAAAGCAAGCGCACTCAGTGACTCCCCCACCTTGGTCTGTGGGAATGCCCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp AGCTACAGTATTCTTTTCCCACAGGACTCCTCAGAGAGGAATCGACCAGGATGTCACATCCCTGAGCTGTaGTCCCAGAAGTGCCTGCTT +
Preference number: 2 (lower is better)
Translates to: SYSILFPQDSSERNRPGCHIPEL*SQKCLL
Trigger: AAGCAGGCACTTCTGGGACCACAGCTCAGGGATGTG...ACATCCTGGTCGATTCCTCTCTGAGGAGTCCTGTGGGAAAAGAATACTGTAGCT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp GGACAGGGAGGTTCCTGCCTGCTTCCCTCTACCCTAGAGACCTGTCTCCTTCACATCTTCCCACAAACGTaGAAAACATTCTATCTGGAA +
Preference number: 2 (lower is better)
Translates to: GQGGSCLLPSTLETCLLHIFPQT*KTFYLE
Trigger: TTCCAGATAGAATGTTTTTCACGTTTGTGGGAAGAT...GTGAAGGAGACAGGTCTCTAGGGTAGAGGGAAGCAGGCAGGAACCTCCCTGTCC
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp AGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTACAGTACTTGAGGAAAGCAGCTaGGAATCTGACCCAGAGCCA +
Preference number: 2 (lower is better)
Translates to: SPGFHSRQKHVNSTGATVLEESS*ESDPEP
Trigger: TGGCTCTGGGTCAGATTCTCAGCTGCTTTCCTCAAG...TACTGTAGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp CACAACAGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTCAGGGCTCTTGGCAATaGATGGGCTCTTTGTTCTGT +
Preference number: 2 (lower is better)
Translates to: HNSPGFHSRQKHVNSTGAQGSWQ*MGSLFC
Trigger: ACAGAACAAAGAGCCCATTCATTGCCAAGAGCCCTG...AGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACTGTTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp TGGAGGCACTACCTAGGAGGCACAGGATGCTGTTGTCTCCAGGGTAAGTTAATAGTAAGGCAGAGTTTCTaGCCTTCAGGCTTGTGGGAT +
Preference number: 2 (lower is better)
Translates to: WRHYLGGTGCCCLQGKLIVRQSF*PSGLWD
Trigger: ATCCCACAAGCCTGAAGGGCAGAAACTCTGCCTTAC...TATTAACTTACCCTGGAGACAACAGCATCCTGTGCCTCCTAGGTAGTGCCTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp CAATACAGCCACAAGCTCCTATCACAGGCCTGGGATGGCAACACAGACAAAAACGTAAGGCAGAGTTTCTaGCCTTCAGGCTTGTGGGAT +
Preference number: 2 (lower is better)
Translates to: QYSHKLLSQAWDGNTDKNVRQSF*PSGLWD
Trigger: ATCCCACAAGCCTGAAGGGCAGAAACTCTGCCTTAC...GTTTTTGTCTGTGTTGCCATCCCAGGCCTGTGATAGGAGCTTGTGGCTGTATTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp GTCCGGACCCAGGTAGAGTGCTTTGAGAGGAGTTGTAGGGAATTTCATCGAACTCTAAGCAAAGAAGGCTaGTGTGTGCACAGAGGTGCT +
Preference number: 2 (lower is better)
Translates to: VRTQVECFERSCREFHRTLSKEG*CVHRGA
Trigger: AGCACCTCTGTGCACACAGCAGCCTTCTTTGCTTAG...AGTTCGATGAAATTCCCTACAACTCCTCTCAAAGCACTCTACCTGGGTCCGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp GGGAGCTACAGTATTCTTTTCCCACAGGACTCCTCAGAGAGGAATCGACCAGGATGTACAATGGCAACTTaGAGAACCTTTCCCCCACTC +
Preference number: 2 (lower is better)
Translates to: GSYSILFPQDSSERNRPGCTMAT*RTFPPL
Trigger: GAGTGGGGGAAAGGTTCTGCAAGTTGCCATTGTACA...TCCTGGTCGATTCCTCTCTGAGGAGTCCTGTGGGAAAAGAATACTGTAGCTCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp GTTGAAAAATTCTCACTCAAAGTGAGTATTTTTGGTGGTCTGGATCAGAGAGGACCAAGGCACTGTGGGTaGCCCAAGGAGGTGCAGGGC +
Preference number: 2 (lower is better)
Translates to: VEKFSLKVSIFGGLDQRGPRHCG*PKEVQG
Trigger: GCCCTGCACCTCCTTGGGCCACCCACAGTGCCTTGG...TCCTCTCTGATCCAGACCACCAAAAATACTCACTTTGAGTGAGAATTTTTCAAC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp CACAAACGTGAAAAACATTCTATCTGGAACTTTTTCTCTCTCAAGTGGCTGGGGCTACCCAAGGCACTGTaGGTGGCCCAAGGAGGTGCA +
Preference number: 2 (lower is better)
Translates to: HKREKHSIWNFFSLKWLGLPKAL*VAQGGA
Trigger: TGCACCTCCTTGGGCCACCCACAGTGCCTTGGGTAG...CCCCAGCCACTTGAGAGAGAAAAAGTTCCAGATAGAATGTTTTTCACGTTTGTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp AGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTACAGTAGAGGATAAGGTTGGGTaGGAACAGCGACTTCCAAAG +
Preference number: 2 (lower is better)
Translates to: SPGFHSRQKHVNSTGATVEDKVG*EQRLPK
Trigger: CTTTGGAAGTCGCTGTTCTCACCCAACCTTATCCTC...TACTGTAGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp GTCCGGACCCAGGTAGAGTGCTTTGAGAGGAGTTGTAGGGAATTTCATCGAACTAATACATCTAGTGGCTaGCCTAATGTCTCCACGCTG +
Preference number: 2 (lower is better)
Translates to: VRTQVECFERSCREFHRTNTSSG*PNVSTL
Trigger: CAGCGTGGAGACATTAGGTCAGCCACTAGATGTATT...AGTTCGATGAAATTCCCTACAACTCCTCTCAAAGCACTCTACCTGGGTCCGGAC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp GCAAGGAGGTGGGCTCTCCTTCTCCACATGGCTTTGGGGGCTATATGTTTTTATAATACATCTAGTGGCTaGCCTAATGTCTCCACGCTG +
Preference number: 2 (lower is better)
Translates to: ARRWALLLHMALGAICFYNTSSG*PNVSTL
Trigger: CAGCGTGGAGACATTAGGTCAGCCACTAGATGTATT...ATAAAAACATATAGCCCCCAAAGCCATGTGGAGAAGGAGAGCCCACCTCCTTGC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp GATTTGTACAATGGCAACTTGCAGAACCTTTCCCCCACTCTACAAATTAACAACCTCTGGAGCCTGTGCTaGCTACCCAAGGCACTGTGG +
Preference number: 2 (lower is better)
Translates to: DLYNGNLQNLSPTLQINNLWSLC*LPKALW
Trigger: CCACAGTGCCTTGGGTAGGCAGCACAGGCTCCAGAG...GTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTGCAAGTTGCCATTGTACAAATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp AGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTACAGTAGTAAGGCAGAGTTTCTaGCCTTCAGGCTTGTGGGAT +
Preference number: 2 (lower is better)
Translates to: SPGFHSRQKHVNSTGATVVRQSF*PSGLWD
Trigger: ATCCCACAAGCCTGAAGGGCAGAAACTCTGCCTTAC...TACTGTAGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp AGTAGCACATTTTTCTTGGGTTTGGAGCAGGCCTTAGCCTTTCCCACAGCTTCCTGTACAATGGCAACTTaGAGAACCTTTCCCCCACTC +
Preference number: 2 (lower is better)
Translates to: SSTFFLGLEQALAFPTASCTMAT*RTFPPL
Trigger: GAGTGGGGGAAAGGTTCTGCAAGTTGCCATTGTACA...GGAAGCTGTGGGAAAGGCTAAGGCCTGCTCCAAACCCAAGAAAAATGTGCTACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp AGCTACAGTATTCTTTTCCCACAGGACTCCTCAGAGAGGAATCGACCAGGATGTTATGTTTCAGCACAGTaGAAGGAGGTGGGCTCTCCT +
Preference number: 2 (lower is better)
Translates to: SYSILFPQDSSERNRPGCYVSAQ*KEVGSP
Trigger: AGGAGAGCCCACCTCCTTGCACTGTGCTGAAACATA...ACATCCTGGTCGATTCCTCTCTGAGGAGTCCTGTGGGAAAAGAATACTGTAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp AGCTACAGTATTCTTTTCCCACAGGACTCCTCAGAGAGGAATCGACCAGGATGTGGGGGAGTCACTGAGTaGGCTTGCTTTCTTTCCTTT +
Preference number: 2 (lower is better)
Translates to: SYSILFPQDSSERNRPGCGGVTE*ACFLSF
Trigger: AAAGGAAAGAAAGCAAGCGCACTCAGTGACTCCCCC...ACATCCTGGTCGATTCCTCTCTGAGGAGTCCTGTGGGAAAAGAATACTGTAGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp TCTGTAAACTGCAAGGAAATGCATCTGCTGCATTCACACAAAAGCATGTGCATCTCTGGCTCTTTCCTCTaGAGCCTGTGCTGCCTACCC +
Preference number: 2 (lower is better)
Translates to: SVNCKEMHLLHSHKSMCISGSFL*SLCCLP
Trigger: GGGTAGGCAGCACAGGCTCCAGAGGAAAGAGCCAGA...GATGCACATGCTTTTGTGTGAATGCAGCAGATGCATTTCCTTGCAGTTTACAGA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp ACTAAGGGTGAGACTACCAAACCTTGCAAAGGACAAAAATGGCCTTTAAAGGGAACAGACAACAGCGTGTaGGGGAGGGGTGCAGCAGAA +
Preference number: 2 (lower is better)
Translates to: TKGETTKPCKGQKWPLKGTDNSV*GRGAAE
Trigger: TTCTGCTGCACCCCTCCCCCACACGCTGTTGTCTGT...TCCCTTTAAAGGCCATTTTTGTCCTTTGCAAGGTTTGGTAGTCTCACCCTTAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp CACAACAGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTGGTCTGGCCAAAGTCTaGAGGGTAAAAACTCTTCCT +
Preference number: 2 (lower is better)
Translates to: HNSPGFHSRQKHVNSTGAGLAKV*RVKTLP
Trigger: AGGAAGAGTTTTTACCCTCCAGACTTTGGCCAGACC...AGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACTGTTGTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CAA 90 bp ATGAGCTACAAGGGCGCTGGGAGGCAAGTCCTACATACTGGCTTATaGTTAGGACTCTACCTGGATGAAAACTTGACAGCAGCATCAACA +
Preference number: 2 (lower is better)
Translates to: MSYKGAGRQVLHTGL*LGLYLDENLTAAST
Trigger: TGTTGATGCTGCTGTCAAGTTTTCATCCAGGTAGAGTCCTAACAATAAGCCAGTATGTAGGACTTGCCTCCCAGCGCCCTTGTAGCTCAT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp GCAAGGAGGTGGGCTCTCCTTCTCCACATGGCTTTGGGGGCTATATGTTTTTATACCTGGATGAAAACTTaGCAGCAGCATCAACAGACA +
Preference number: 2 (lower is better)
Translates to: ARRWALLLHMALGAICFYTWMKT*QQHQQT
Trigger: TGTCTGTTGATGCTGCTGTCAAGTTTTCATCCAGGT...ATAAAAACATATAGCCCCCAAAGCCATGTGGAGAAGGAGAGCCCACCTCCTTGC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp GTCCGGACCCAGGTAGAGTGCTTTGAGAGGAGTTGTAGGGAATTTCATCGAACTACCTGGATGAAAACTTaGCAGCAGCATCAACAGACA +
Preference number: 2 (lower is better)
Translates to: VRTQVECFERSCREFHRTTWMKT*QQHQQT
Trigger: TGTCTGTTGATGCTGCTGTCAAGTTTTCATCCAGGT...AGTTCGATGAAATTCCCTACAACTCCTCTCAAAGCACTCTACCTGGGTCCGGAC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp TGGCCTTTAAAGGGAGCCAGAGAACAGGAATTACAAAGCTCTAAGACTCCACACGGCTTCTCTGGGTCTTaGCTTTCTGTTCTAGACCCT +
Preference number: 2 (lower is better)
Translates to: WPLKGAREQELQSSKTPHGFSGS*LSVLDP
Trigger: AGGGTCTAGAACAGAAAGTCAAGACCCAGAGAAGCC...GTGTGGAGTCTTAGAGCTTTGTAATTCCTGTTCTCTGGCTCCCTTTAAAGGCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp AGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTACAGTACAGAGGTGCTGTCTCTaGACTGTGTCTCTGATTTCT +
Preference number: 2 (lower is better)
Translates to: SPGFHSRQKHVNSTGATVQRCCL*TVSLIS
Trigger: AGAAATCAGAGACACAGTTCAGAGACAGCACCTCTG...TACTGTAGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp TGGCCTTTAAAGGGAGCCAGAGAACAGGAATTACAAAGCTCTAAGACTCCACACCTAAGCAAAGAAGGCTaGTGTGTGCACAGAGGTGCT +
Preference number: 2 (lower is better)
Translates to: WPLKGAREQELQSSKTPHLSKEG*CVHRGA
Trigger: AGCACCTCTGTGCACACAGCAGCCTTCTTTGCTTAG...GTGTGGAGTCTTAGAGCTTTGTAATTCCTGTTCTCTGGCTCCCTTTAAAGGCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp AGCTACAGTATTCTTTTCCCACAGGACTCCTCAGAGAGGAATCGACCAGGATGTTTGGCTCAGAGATTCTaGAGGGCTCTTGGCAATGAA +
Preference number: 2 (lower is better)
Translates to: SYSILFPQDSSERNRPGCLAQRF*RALGNE
Trigger: TTCATTGCCAAGAGCCCTGCAGAATCTCTGAGCCAA...ACATCCTGGTCGATTCCTCTCTGAGGAGTCCTGTGGGAAAAGAATACTGTAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp AGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTACAGTAATTCTTTCAGCAGCCTaGTCTTTGCCCCTCTACCTT +
Preference number: 2 (lower is better)
Translates to: SPGFHSRQKHVNSTGATVILSAA*SLPLYL
Trigger: AAGGTAGAGGGGCAAAGACCAGGCTGCTGAAAGAAT...TACTGTAGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp CGGGCATTCCCACAGACCAAGGTGGGGGAGTCACTGAGTGCGCTTGCTTTCTTTATATTGTCACTTTGCTaGTACCTGTATCATTTCACT +
Preference number: 2 (lower is better)
Translates to: RAFPQTKVGESLSALAFFILSLC*YLYHFT
Trigger: AGTGAAATGATACAGGTACCAGCAAAGTGACAATAT...AAAGAAAGCAAGCGCACTCAGTGACTCCCCCACCTTGGTCTGTGGGAATGCCCG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp AGCTACAGTATTCTTTTCCCACAGGACTCCTCAGAGAGGAATCGACCAGGATGTCTCTCCTTCTCCACATaGCTTTGGGGGCTATATGTT +
Preference number: 2 (lower is better)
Translates to: SYSILFPQDSSERNRPGCLSFST*LWGLYV
Trigger: AACATATAGCCCCCAAAGCCATGTGGAGAAGGAGAG...ACATCCTGGTCGATTCCTCTCTGAGGAGTCCTGTGGGAAAAGAATACTGTAGCT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp CACAACAGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTGCTTGTGGGATGAGATaGTCAAAATCAAATTGCCTC +
Preference number: 2 (lower is better)
Translates to: HNSPGFHSRQKHVNSTGAACGMR*SKSNCL
Trigger: GAGGCAATTTGATTTTGATCATCTCATCCCACAAGC...AGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACTGTTGTG
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp CAAGGAGGTGGGCTCTCCTTCTCCACATGGCTTTGGGGGCTATATGTTTTTATGGCTTGTGGGATGAGATaGTCAAAATCAAATTGCCTC +
Preference number: 2 (lower is better)
Translates to: QGGGLSFSTWLWGLYVFMACGMR*SKSNCL
Trigger: GAGGCAATTTGATTTTGATCATCTCATCCCACAAGC...CATAAAAACATATAGCCCCCAAAGCCATGTGGAGAAGGAGAGCCCACCTCCTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp AGCTACAGTATTCTTTTCCCACAGGACTCCTCAGAGAGGAATCGACCAGGATGTACCTGGATGAAAACTTaGCAGCAGCATCAACAGACA +
Preference number: 2 (lower is better)
Translates to: SYSILFPQDSSERNRPGCTWMKT*QQHQQT
Trigger: TGTCTGTTGATGCTGCTGTCAAGTTTTCATCCAGGT...ACATCCTGGTCGATTCCTCTCTGAGGAGTCCTGTGGGAAAAGAATACTGTAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp CACAACAGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTGTCTCATCAGAGCTTTaGCATTCAACACAACAGGTA +
Preference number: 2 (lower is better)
Translates to: HNSPGFHSRQKHVNSTGAVSSEL*HSTQQV
Trigger: TACCTGTTGTGTTGAATGTCAAAGCTCTGATGAGAC...AGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACTGTTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp AGTAGCACATTTTTCTTGGGTTTGGAGCAGGCCTTAGCCTTTCCCACAGCTTCCGTGGAAGGGCTGGTCTaGAAGGTTGAATTTCTTAAA +
Preference number: 2 (lower is better)
Translates to: SSTFFLGLEQALAFPTASVEGLV*KVEFLK
Trigger: TTTAAGAAATTCAACCTTTCAGACCAGCCCTTCCAC...GGAAGCTGTGGGAAAGGCTAAGGCCTGCTCCAAACCCAAGAAAAATGTGCTACT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp TGGCCTTTAAAGGGAGCCAGAGAACAGGAATTACAAAGCTCTAAGACTCCACACTTGGCTCAGAGATTCTaGAGGGCTCTTGGCAATGAA +
Preference number: 2 (lower is better)
Translates to: WPLKGAREQELQSSKTPHLAQRF*RALGNE
Trigger: TTCATTGCCAAGAGCCCTGCAGAATCTCTGAGCCAA...GTGTGGAGTCTTAGAGCTTTGTAATTCCTGTTCTCTGGCTCCCTTTAAAGGCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp CAGAACCTTTCCCCCACTCTACAAATTAACAACTTGCTCTGTTTAATACTACATCTACCCAAGGCACTGTaGGTGGCCCAAGGAGGTGCA +
Preference number: 2 (lower is better)
Translates to: QNLSPTLQINNLLCLILHLPKAL*VAQGGA
Trigger: TGCACCTCCTTGGGCCACCCACAGTGCCTTGGGTAG...ATGTAGTATTAAACAGAGCAAGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp GCAAGGAGGTGGGCTCTCCTTCTCCACATGGCTTTGGGGGCTATATGTTTTTATGGGCTCTTTGTTCTGTaGAATCTGCTGCAAACATTT +
Preference number: 2 (lower is better)
Translates to: ARRWALLLHMALGAICFYGLFVL*NLLQTF
Trigger: AAATGTTTGCAGCAGATTCCACAGAACAAAGAGCCC...ATAAAAACATATAGCCCCCAAAGCCATGTGGAGAAGGAGAGCCCACCTCCTTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp GCAAGGAGGTGGGCTCTCCTTCTCCACATGGCTTTGGGGGCTATATGTTTTTATCAAAGTGAGTATTTTTaGTGGTCTGGATCAGAGAGG +
Preference number: 2 (lower is better)
Translates to: ARRWALLLHMALGAICFYQSEYF*WSGSER
Trigger: CCTCTCTGATCCAGACCACCAAAAATACTCACTTTG...ATAAAAACATATAGCCCCCAAAGCCATGTGGAGAAGGAGAGCCCACCTCCTTGC
47% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp CACAACAGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTCAAAGTGAGTATTTTTaGTGGTCTGGATCAGAGAGG +
Preference number: 2 (lower is better)
Translates to: HNSPGFHSRQKHVNSTGAQSEYF*WSGSER
Trigger: CCTCTCTGATCCAGACCACCAAAAATACTCACTTTG...AGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACTGTTGTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp CAAGGAGGTGGGCTCTCCTTCTCCACATGGCTTTGGGGGCTATATGTTTTTATGCAAAGTGAGTATTTTTaGTGGTCTGGATCAGAGAGG +
Preference number: 2 (lower is better)
Translates to: QGGGLSFSTWLWGLYVFMQSEYF*WSGSER
Trigger: CCTCTCTGATCCAGACCACCAAAAATACTCACTTTG...CATAAAAACATATAGCCCCCAAAGCCATGTGGAGAAGGAGAGCCCACCTCCTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp CACAACAGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTTCCACACTTCTGCCTTaGGTCAAGAAAGCATACATA +
Preference number: 2 (lower is better)
Translates to: HNSPGFHSRQKHVNSTGASTLLP*VKKAYI
Trigger: TATGTATGCTTTCTTGACCCAAGGCAGAAGTGTGGA...AGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACTGTTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp GTCCGGACCCAGGTAGAGTGCTTTGAGAGGAGTTGTAGGGAATTTCATCGAACTTCCACACTTCTGCCTTaGGTCAAGAAAGCATACATA +
Preference number: 2 (lower is better)
Translates to: VRTQVECFERSCREFHRTSTLLP*VKKAYI
Trigger: TATGTATGCTTTCTTGACCCAAGGCAGAAGTGTGGA...AGTTCGATGAAATTCCCTACAACTCCTCTCAAAGCACTCTACCTGGGTCCGGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CAA 90 bp CCAGAGAACAGGAATTACAAAGCTCTAAGACTCCACACTTCTGCCTaGGGTCAAGAAAGCATACATAAGAAAAGGCAGGGGGAAACCTCT +
Preference number: 2 (lower is better)
Translates to: PENRNYKALRLHTSA*GQESIHKKRQGETS
Trigger: AGAGGTTTCCCCCTGCCTTTTCTTATGTATGCTTTCTTGACCCAAGGCAGAAGTGTGGAGTCTTAGAGCTTTGTAATTCCTGTTCTCTGG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp TGGCCTTTAAAGGGAGCCAGAGAACAGGAATTACAAAGCTCTAAGACTCCACACGCATGTGCATCATGTTaGAGGCCATACATTCAACTC +
Preference number: 2 (lower is better)
Translates to: WPLKGAREQELQSSKTPHACASC*RPYIQL
Trigger: GAGTTGAATGTATGGCCTTCAACATGATGCACATGC...GTGTGGAGTCTTAGAGCTTTGTAATTCCTGTTCTCTGGCTCCCTTTAAAGGCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp AGTAGCACATTTTTCTTGGGTTTGGAGCAGGCCTTAGCCTTTCCCACAGCTTCCTACACCTGTTTCCATTaGGGTAGTTGTCTTTGTCAA +
Preference number: 2 (lower is better)
Translates to: SSTFFLGLEQALAFPTASYTCFH*GSCLCQ
Trigger: TTGACAAAGACAACTACCTCAATGGAAACAGGTGTA...GGAAGCTGTGGGAAAGGCTAAGGCCTGCTCCAAACCCAAGAAAAATGTGCTACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp AGTAGCACATTTTTCTTGGGTTTGGAGCAGGCCTTAGCCTTTCCCACAGCTTCCCAAGTGTGTATCTGCTaGGAAAATGTGGAAAAGGTA +
Preference number: 2 (lower is better)
Translates to: SSTFFLGLEQALAFPTASQVCIC*ENVEKV
Trigger: TACCTTTTCCACATTTTCTCAGCAGATACACACTTG...GGAAGCTGTGGGAAAGGCTAAGGCCTGCTCCAAACCCAAGAAAAATGTGCTACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp AGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTACAGTAGTCTCATCAGAGCTTTaGCATTCAACACAACAGGTA +
Preference number: 2 (lower is better)
Translates to: SPGFHSRQKHVNSTGATVVSSEL*HSTQQV
Trigger: TACCTGTTGTGTTGAATGTCAAAGCTCTGATGAGAC...TACTGTAGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp TGGCCTTTAAAGGGAGCCAGAGAACAGGAATTACAAAGCTCTAAGACTCCACACTCTCCTCATAATACCTaGGTTTGCAAAGCAGCCCAT +
Preference number: 2 (lower is better)
Translates to: WPLKGAREQELQSSKTPHSPHNT*VCKAAH
Trigger: ATGGGCTGCTTTGCAAACTCAGGTATTATGAGGAGA...GTGTGGAGTCTTAGAGCTTTGTAATTCCTGTTCTCTGGCTCCCTTTAAAGGCCA
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp AGTAGCACATTTTTCTTGGGTTTGGAGCAGGCCTTAGCCTTTCCCACAGCTTCCAATTCTCACTCAAAGTaGGTATTTTTGGTGGTCTGG +
Preference number: 2 (lower is better)
Translates to: SSTFFLGLEQALAFPTASNSHSK*VFLVVW
Trigger: CCAGACCACCAAAAATACTCACTTTGAGTGAGAATT...GGAAGCTGTGGGAAAGGCTAAGGCCTGCTCCAAACCCAAGAAAAATGTGCTACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp CAATACAGCCACAAGCTCCTATCACAGGCCTGGGATGGCAACACAGACAAAAACAATTCTCACTCAAAGTaGGTATTTTTGGTGGTCTGG +
Preference number: 2 (lower is better)
Translates to: QYSHKLLSQAWDGNTDKNNSHSK*VFLVVW
Trigger: CCAGACCACCAAAAATACTCACTTTGAGTGAGAATT...GTTTTTGTCTGTGTTGCCATCCCAGGCCTGTGATAGGAGCTTGTGGCTGTATTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp TCTGTAAACTGCAAGGAAATGCATCTGCTGCATTCACACAAAAGCATGTGCATCTGTGATGGAGGTAGCTaGTCCACAGTCTCCATCTTG +
Preference number: 2 (lower is better)
Translates to: SVNCKEMHLLHSHKSMCICDGGS*STVSIL
Trigger: CAAGATGGAGACTGTGGAGCAGCTACCTCCATCACA...GATGCACATGCTTTTGTGTGAATGCAGCAGATGCATTTCCTTGCAGTTTACAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp AGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTACAGTAGAGACTACCAAACCTTaGAAAGGACAAAAATGGCCT +
Preference number: 2 (lower is better)
Translates to: SPGFHSRQKHVNSTGATVETTKP*KGQKWP
Trigger: AGGCCATTTTTGTCCTTTGCAAGGTTTGGTAGTCTC...TACTGTAGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp AGTAGCACATTTTTCTTGGGTTTGGAGCAGGCCTTAGCCTTTCCCACAGCTTCCTCAGAATTCAGAACATaGCATTTTCCTGTCCCTTTC +
Preference number: 2 (lower is better)
Translates to: SSTFFLGLEQALAFPTASSEFRT*HFPVPF
Trigger: GAAAGGGACAGGAAAATGCCATGTTCTGAATTCTGA...GGAAGCTGTGGGAAAGGCTAAGGCCTGCTCCAAACCCAAGAAAAATGTGCTACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp CCTTTAAAGGGAGCCAGAGAACAGGAATTACAAAGCTCTAAGACTCCACACTTCATTCTTTCAGCAGCCTaGTCTTTGCCCCTCTACCTT +
Preference number: 2 (lower is better)
Translates to: PLKGAREQELQSSKTPHFILSAA*SLPLYL
Trigger: AAGGTAGAGGGGCAAAGACCAGGCTGCTGAAAGAAT...GAAGTGTGGAGTCTTAGAGCTTTGTAATTCCTGTTCTCTGGCTCCCTTTAAAGG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp GGGAGCTACAGTATTCTTTTCCCACAGGACTCCTCAGAGAGGAATCGACCAGGAAATGGATTTGTACAATaGCAACTTGCAGAACCTTTC +
Preference number: 2 (lower is better)
Translates to: GSYSILFPQDSSERNRPGNGFVQ*QLAEPF
Trigger: GAAAGGTTCTGCAAGTTGCCATTGTACAAATCCATT...TCCTGGTCGATTCCTCTCTGAGGAGTCCTGTGGGAAAAGAATACTGTAGCTCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp AGCTACAGTATTCTTTTCCCACAGGACTCCTCAGAGAGGAATCGACCAGGATGTGGGCTCTTTGTTCTGTaGAATCTGCTGCAAACATTT +
Preference number: 2 (lower is better)
Translates to: SYSILFPQDSSERNRPGCGLFVL*NLLQTF
Trigger: AAATGTTTGCAGCAGATTCCACAGAACAAAGAGCCC...ACATCCTGGTCGATTCCTCTCTGAGGAGTCCTGTGGGAAAAGAATACTGTAGCT
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp AGCTACAGTATTCTTTTCCCACAGGACTCCTCAGAGAGGAATCGACCAGGATGTAGTGAGTATTTTTGGTaGTCTGGATCAGAGAGGACA +
Preference number: 2 (lower is better)
Translates to: SYSILFPQDSSERNRPGCSEYFW*SGSERT
Trigger: TGTCCTCTCTGATCCAGACCACCAAAAATACTCACT...ACATCCTGGTCGATTCCTCTCTGAGGAGTCCTGTGGGAAAAGAATACTGTAGCT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp AGCTACAGTATTCTTTTCCCACAGGACTCCTCAGAGAGGAATCGACCAGGATGTACTAAAGAGAAAAACTaGCAAATGGAGGCACTACCT +
Preference number: 2 (lower is better)
Translates to: SYSILFPQDSSERNRPGCTKEKN*QMEALP
Trigger: AGGTAGTGCCTCCATTTGTCAGTTTTTCTCTTTAGT...ACATCCTGGTCGATTCCTCTCTGAGGAGTCCTGTGGGAAAAGAATACTGTAGCT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp CACAACAGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTCTTCGCTCCTTTGTTTaGTTCTTTTACTTAGAAGTC +
Preference number: 2 (lower is better)
Translates to: HNSPGFHSRQKHVNSTGALRSFV*FFYLEV
Trigger: GACTTCTAAGTAAAAGAAGCAAACAAAGGAGCGAAG...AGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACTGTTGTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp ACTAAGGGTGAGACTACCAAACCTTGCAAAGGACAAAAATGGCCTTTAAAGGGAATTCTTTCAGCAGCCTaGTCTTTGCCCCTCTACCTT +
Preference number: 2 (lower is better)
Translates to: TKGETTKPCKGQKWPLKGILSAA*SLPLYL
Trigger: AAGGTAGAGGGGCAAAGACCAGGCTGCTGAAAGAAT...TCCCTTTAAAGGCCATTTTTGTCCTTTGCAAGGTTTGGTAGTCTCACCCTTAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp GGGAGCTACAGTATTCTTTTCCCACAGGACTCCTCAGAGAGGAATCGACCAGGAATATTGTCACTTTGCTaGTACCTGTATCATTTCACT +
Preference number: 2 (lower is better)
Translates to: GSYSILFPQDSSERNRPGILSLC*YLYHFT
Trigger: AGTGAAATGATACAGGTACCAGCAAAGTGACAATAT...TCCTGGTCGATTCCTCTCTGAGGAGTCCTGTGGGAAAAGAATACTGTAGCTCCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp GTTGAAAAATTCTCACTCAAAGTGAGTATTTTTGGTGGTCTGGATCAGAGAGGAGAACACACAGCCACTTaGCTCAGAGATTCTGCAGGG +
Preference number: 2 (lower is better)
Translates to: VEKFSLKVSIFGGLDQRGEHTAT*LRDSAG
Trigger: CCCTGCAGAATCTCTGAGCCAAGTGGCTGTGTGTTC...TCCTCTCTGATCCAGACCACCAAAAATACTCACTTTGAGTGAGAATTTTTCAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp AGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTACAGTATTCTCCACATGGCTTTaGGGGCTATATGTTTTTATG +
Preference number: 2 (lower is better)
Translates to: SPGFHSRQKHVNSTGATVFSTWL*GLYVFM
Trigger: CATAAAAACATATAGCCCCCAAAGCCATGTGGAGAA...TACTGTAGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp ACTAAGGGTGAGACTACCAAACCTTGCAAAGGACAAAAATGGCCTTTAAAGGGACTCTCCTTCTCCACATaGCTTTGGGGGCTATATGTT +
Preference number: 2 (lower is better)
Translates to: TKGETTKPCKGQKWPLKGLSFST*LWGLYV
Trigger: AACATATAGCCCCCAAAGCCATGTGGAGAAGGAGAG...TCCCTTTAAAGGCCATTTTTGTCCTTTGCAAGGTTTGGTAGTCTCACCCTTAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp GTTGAAAAATTCTCACTCAAAGTGAGTATTTTTGGTGGTCTGGATCAGAGAGGAGGCTTCTCTGGGTCTTaGCTTTCTGTTCTAGACCCT +
Preference number: 2 (lower is better)
Translates to: VEKFSLKVSIFGGLDQRGGFSGS*LSVLDP
Trigger: AGGGTCTAGAACAGAAAGTCAAGACCCAGAGAAGCC...TCCTCTCTGATCCAGACCACCAAAAATACTCACTTTGAGTGAGAATTTTTCAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp CACAAACGTGAAAAACATTCTATCTGGAACTTTTTCTCTCTCAAGTGGCTGGGGATCCCTGATAATACTTaGAGGAAGAGCTGGGCTTCT +
Preference number: 2 (lower is better)
Translates to: HKREKHSIWNFFSLKWLGIPDNT*RKSWAS
Trigger: AGAAGCCCAGCTCTTCCTTCAAGTATTATCAGGGAT...CCCCAGCCACTTGAGAGAGAAAAAGTTCCAGATAGAATGTTTTTCACGTTTGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp AACTTGCAGAACCTTTCCCCCACTCTACAAATTAACAACTTGCTCTGTTTAATACTTGAGGAAAGCAGCTaGGAATCTGACCCAGAGCCA +
Preference number: 2 (lower is better)
Translates to: NLQNLSPTLQINNLLCLILEESS*ESDPEP
Trigger: TGGCTCTGGGTCAGATTCTCAGCTGCTTTCCTCAAG...TATTAAACAGAGCAAGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTGCAAGTT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp GATTTGTACAATGGCAACTTGCAGAACCTTTCCCCCACTCTACAAATTAACAACCAGAGGTGCTGTCTCTaGACTGTGTCTCTGATTTCT +
Preference number: 2 (lower is better)
Translates to: DLYNGNLQNLSPTLQINNQRCCL*TVSLIS
Trigger: AGAAATCAGAGACACAGTTCAGAGACAGCACCTCTG...GTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTGCAAGTTGCCATTGTACAAATC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp CCTTTAAAGGGAGCCAGAGAACAGGAATTACAAAGCTCTAAGACTCCACACTTCGTCTCATCAGAGCTTTaGCATTCAACACAACAGGTA +
Preference number: 2 (lower is better)
Translates to: PLKGAREQELQSSKTPHFVSSEL*HSTQQV
Trigger: TACCTGTTGTGTTGAATGTCAAAGCTCTGATGAGAC...GAAGTGTGGAGTCTTAGAGCTTTGTAATTCCTGTTCTCTGGCTCCCTTTAAAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp GTTGAAAAATTCTCACTCAAAGTGAGTATTTTTGGTGGTCTGGATCAGAGAGGACCACAGTCTCCATCTTaGTCTCTGGCTCTTTCCTCT +
Preference number: 2 (lower is better)
Translates to: VEKFSLKVSIFGGLDQRGPQSPS*SLALSS
Trigger: AGAGGAAAGAGCCAGAGACCAAGATGGAGACTGTGG...TCCTCTCTGATCCAGACCACCAAAAATACTCACTTTGAGTGAGAATTTTTCAAC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp CACAAACGTGAAAAACATTCTATCTGGAACTTTTTCTCTCTCAAGTGGCTGGGGAGTGGTAGGAGAGCCTaGTACAAAGAAAGGGAAAAG +
Preference number: 2 (lower is better)
Translates to: HKREKHSIWNFFSLKWLGSGRRA*YKEREK
Trigger: CTTTTCCCTTTCTTTGTACCAGGCTCTCCTACCACT...CCCCAGCCACTTGAGAGAGAAAAAGTTCCAGATAGAATGTTTTTCACGTTTGTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp CCTTTAAAGGGAGCCAGAGAACAGGAATTACAAAGCTCTAAGACTCCACACTTCGTTAATAGGCTTCACTaGGGAAGTGTAAACAGTTCC +
Preference number: 2 (lower is better)
Translates to: PLKGAREQELQSSKTPHFVNRLH*GSVNSS
Trigger: GGAACTGTTTACACTTCCCCAGTGAAGCCTATTAAC...GAAGTGTGGAGTCTTAGAGCTTTGTAATTCCTGTTCTCTGGCTCCCTTTAAAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp TGGCCTTTAAAGGGAGCCAGAGAACAGGAATTACAAAGCTCTAAGACTCCACACTTCTCCACATGGCTTTaGGGGCTATATGTTTTTATG +
Preference number: 2 (lower is better)
Translates to: WPLKGAREQELQSSKTPHFSTWL*GLYVFM
Trigger: CATAAAAACATATAGCCCCCAAAGCCATGTGGAGAA...GTGTGGAGTCTTAGAGCTTTGTAATTCCTGTTCTCTGGCTCCCTTTAAAGGCCA
43% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp CACAAACGTGAAAAACATTCTATCTGGAACTTTTTCTCTCTCAAGTGGCTGGGGGCTTGTGGGATGAGATaGTCAAAATCAAATTGCCTC +
Preference number: 2 (lower is better)
Translates to: HKREKHSIWNFFSLKWLGACGMR*SKSNCL
Trigger: GAGGCAATTTGATTTTGATCATCTCATCCCACAAGC...CCCCAGCCACTTGAGAGAGAAAAAGTTCCAGATAGAATGTTTTTCACGTTTGTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp CCTTTAAAGGGAGCCAGAGAACAGGAATTACAAAGCTCTAAGACTCCACACTTCAATTCTCACTCAAAGTaGGTATTTTTGGTGGTCTGG +
Preference number: 2 (lower is better)
Translates to: PLKGAREQELQSSKTPHFNSHSK*VFLVVW
Trigger: CCAGACCACCAAAAATACTCACTTTGAGTGAGAATT...GAAGTGTGGAGTCTTAGAGCTTTGTAATTCCTGTTCTCTGGCTCCCTTTAAAGG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp CAGAACCTTTCCCCCACTCTACAAATTAACAACTTGCTCTGTTTAATACTACATTGTGATGGAGGTAGCTaGTCCACAGTCTCCATCTTG +
Preference number: 2 (lower is better)
Translates to: QNLSPTLQINNLLCLILHCDGGS*STVSIL
Trigger: CAAGATGGAGACTGTGGAGCAGCTACCTCCATCACA...ATGTAGTATTAAACAGAGCAAGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp ACTAAGGGTGAGACTACCAAACCTTGCAAAGGACAAAAATGGCCTTTAAAGGGAGCAAGGAAATGCATCTaGTGCATTCACACAAAAGCA +
Preference number: 2 (lower is better)
Translates to: TKGETTKPCKGQKWPLKGARKCI*CIHTKA
Trigger: TGCTTTTGTGTGAATGCAGCAGATGCATTTCCTTGC...TCCCTTTAAAGGCCATTTTTGTCCTTTGCAAGGTTTGGTAGTCTCACCCTTAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp AACTTGCAGAACCTTTCCCCCACTCTACAAATTAACAACTTGCTCTGTTTAATACCACAGTCTCCATCTTaGTCTCTGGCTCTTTCCTCT +
Preference number: 2 (lower is better)
Translates to: NLQNLSPTLQINNLLCLIPQSPS*SLALSS
Trigger: AGAGGAAAGAGCCAGAGACCAAGATGGAGACTGTGG...TATTAAACAGAGCAAGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTGCAAGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp ATTTGTACAATGGCAACTTGCAGAACCTTTCCCCCACTCTACAAATTAACAACTCTTTCTAGGTCTTTCTaGCTCCATCCCTCCAAACCT +
Preference number: 2 (lower is better)
Translates to: ICTMATCRTFPPLYKLTTLSRSF*LHPSKP
Trigger: AGGTTTGGAGGGATGGAGCCAGAAAGACCTAGAAAG...AGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTGCAAGTTGCCATTGTACAAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp GATTTGTACAATGGCAACTTGCAGAACCTTTCCCCCACTCTACAAATTAACAACAGTGGTAGGAGAGCCTaGTACAAAGAAAGGGAAAAG +
Preference number: 2 (lower is better)
Translates to: DLYNGNLQNLSPTLQINNSGRRA*YKEREK
Trigger: CTTTTCCCTTTCTTTGTACCAGGCTCTCCTACCACT...GTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTGCAAGTTGCCATTGTACAAATC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp ACTAAGGGTGAGACTACCAAACCTTGCAAAGGACAAAAATGGCCTTTAAAGGGATACACCTGTTTCCATTaGGGTAGTTGTCTTTGTCAA +
Preference number: 2 (lower is better)
Translates to: TKGETTKPCKGQKWPLKGYTCFH*GSCLCQ
Trigger: TTGACAAAGACAACTACCTCAATGGAAACAGGTGTA...TCCCTTTAAAGGCCATTTTTGTCCTTTGCAAGGTTTGGTAGTCTCACCCTTAGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp CACAAACGTGAAAAACATTCTATCTGGAACTTTTTCTCTCTCAAGTGGCTGGGGCAAGTGTGTATCTGCTaGGAAAATGTGGAAAAGGTA +
Preference number: 2 (lower is better)
Translates to: HKREKHSIWNFFSLKWLGQVCIC*ENVEKV
Trigger: TACCTTTTCCACATTTTCTCAGCAGATACACACTTG...CCCCAGCCACTTGAGAGAGAAAAAGTTCCAGATAGAATGTTTTTCACGTTTGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 22 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp CAGAACCTTTCCCCCACTCTACAAATTAACAACTTGCTCTGTTTAATACTACATAGGACTCTACCTGGATaGAAACTTGACAGCAGCATC +
Preference number: 2 (lower is better)
Translates to: QNLSPTLQINNLLCLILHRTLPG*KLDSSI
Trigger: GATGCTGCTGTCAAGTTTTCATCCAGGTAGAGTCCT...ATGTAGTATTAAACAGAGCAAGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp ACATATTGTCACTTTGCTGGTACCTGTATCATTTCACTAAAGAGAAAAACTGACGAGGATAAGGTTGGGTaGGAACAGCGACTTCCAAAG +
Preference number: 2 (lower is better)
Translates to: TYCHFAGTCIISLKRKTDEDKVG*EQRLPK
Trigger: CTTTGGAAGTCGCTGTTCTCACCCAACCTTATCCTC...GTCAGTTTTTCTCTTTAGTGAAATGATACAGGTACCAGCAAAGTGACAATATGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp ACATATTGTCACTTTGCTGGTACCTGTATCATTTCACTAAAGAGAAAAACTGACCCACAGTCTCCATCTTaGTCTCTGGCTCTTTCCTCT +
Preference number: 2 (lower is better)
Translates to: TYCHFAGTCIISLKRKTDPQSPS*SLALSS
Trigger: AGAGGAAAGAGCCAGAGACCAAGATGGAGACTGTGG...GTCAGTTTTTCTCTTTAGTGAAATGATACAGGTACCAGCAAAGTGACAATATGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp CAGAACCTTTCCCCCACTCTACAAATTAACAACTTGCTCTGTTTAATACTACATAGAGCTGGGCTTCTCTaGGTCTTGACTTTCTGTTCT +
Preference number: 2 (lower is better)
Translates to: QNLSPTLQINNLLCLILHRAGLL*VLTFCS
Trigger: AGAACAGAAAGTCAAGACCCAGAGAAGCCCAGCTCT...ATGTAGTATTAAACAGAGCAAGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp ATTTGTACAATGGCAACTTGCAGAACCTTTCCCCCACTCTACAAATTAACAACTAGTGGTAGGAGAGCCTaGTACAAAGAAAGGGAAAAG +
Preference number: 2 (lower is better)
Translates to: ICTMATCRTFPPLYKLTTSGRRA*YKEREK
Trigger: CTTTTCCCTTTCTTTGTACCAGGCTCTCCTACCACT...AGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTGCAAGTTGCCATTGTACAAAT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp GATTTGTACAATGGCAACTTGCAGAACCTTTCCCCCACTCTACAAATTAACAACCAAGTGTGTATCTGCTaGGAAAATGTGGAAAAGGTA +
Preference number: 2 (lower is better)
Translates to: DLYNGNLQNLSPTLQINNQVCIC*ENVEKV
Trigger: TACCTTTTCCACATTTTCTCAGCAGATACACACTTG...GTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTGCAAGTTGCCATTGTACAAATC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp GATTTGTACAATGGCAACTTGCAGAACCTTTCCCCCACTCTACAAATTAACAACACTAAAGAGAAAAACTaGCAAATGGAGGCACTACCT +
Preference number: 2 (lower is better)
Translates to: DLYNGNLQNLSPTLQINNTKEKN*QMEALP
Trigger: AGGTAGTGCCTCCATTTGTCAGTTTTTCTCTTTAGT...GTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTGCAAGTTGCCATTGTACAAATC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp CACAAACGTGAAAAACATTCTATCTGGAACTTTTTCTCTCTCAAGTGGCTGGGGCTTCGCTCCTTTGTTTaGTTCTTTTACTTAGAAGTC +
Preference number: 2 (lower is better)
Translates to: HKREKHSIWNFFSLKWLGLRSFV*FFYLEV
Trigger: GACTTCTAAGTAAAAGAAGCAAACAAAGGAGCGAAG...CCCCAGCCACTTGAGAGAGAAAAAGTTCCAGATAGAATGTTTTTCACGTTTGTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp GATTTGTACAATGGCAACTTGCAGAACCTTTCCCCCACTCTACAAATTAACAACTCAGAATTCAGAACATaGCATTTTCCTGTCCCTTTC +
Preference number: 2 (lower is better)
Translates to: DLYNGNLQNLSPTLQINNSEFRT*HFPVPF
Trigger: GAAAGGGACAGGAAAATGCCATGTTCTGAATTCTGA...GTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTGCAAGTTGCCATTGTACAAATC
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp ACATATTGTCACTTTGCTGGTACCTGTATCATTTCACTAAAGAGAAAAACTGACAGAGCTGGGCTTCTCTaGGTCTTGACTTTCTGTTCT +
Preference number: 2 (lower is better)
Translates to: TYCHFAGTCIISLKRKTDRAGLL*VLTFCS
Trigger: AGAACAGAAAGTCAAGACCCAGAGAAGCCCAGCTCT...GTCAGTTTTTCTCTTTAGTGAAATGATACAGGTACCAGCAAAGTGACAATATGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp CCTTTAAAGGGAGCCAGAGAACAGGAATTACAAAGCTCTAAGACTCCACACTTCATATTGTCACTTTGCTaGTACCTGTATCATTTCACT +
Preference number: 2 (lower is better)
Translates to: PLKGAREQELQSSKTPHFILSLC*YLYHFT
Trigger: AGTGAAATGATACAGGTACCAGCAAAGTGACAATAT...GAAGTGTGGAGTCTTAGAGCTTTGTAATTCCTGTTCTCTGGCTCCCTTTAAAGG
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CAA 90 bp CTCTTTGTTCTGTGGAATCTGCTGCAAACATTTGTAAAAATGGATTaGTACAATGGCAACTTGCAGAACCTTTCCCCCACTCTACAAATT +
Preference number: 2 (lower is better)
Translates to: LFVLWNLLQTFVKMD*YNGNLQNLSPTLQI
Trigger: AATTTGTAGAGTGGGGGAAAGGTTCTGCAAGTTGCCATTGTACAAATCCATTTTTACAAATGTTTGCAGCAGATTCCACAGAACAAAGAG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp CAGAACCTTTCCCCCACTCTACAAATTAACAACTTGCTCTGTTTAATACTACATGCAAGGAAATGCATCTaGTGCATTCACACAAAAGCA +
Preference number: 2 (lower is better)
Translates to: QNLSPTLQINNLLCLILHARKCI*CIHTKA
Trigger: TGCTTTTGTGTGAATGCAGCAGATGCATTTCCTTGC...ATGTAGTATTAAACAGAGCAAGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp AACTTGCAGAACCTTTCCCCCACTCTACAAATTAACAACTTGCTCTGTTTAATATACACCTGTTTCCATTaGGGTAGTTGTCTTTGTCAA +
Preference number: 2 (lower is better)
Translates to: NLQNLSPTLQINNLLCLIYTCFH*GSCLCQ
Trigger: TTGACAAAGACAACTACCTCAATGGAAACAGGTGTA...TATTAAACAGAGCAAGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTGCAAGTT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR TCA 90 bp GTTGAAAAATTCTCACTCAAAGTGAGTATTTTTGGTGGTCTGGATCAGAGAGGAATCTTCCCACAAACGTaGAAAACATTCTATCTGGAA +
Preference number: 2 (lower is better)
Translates to: VEKFSLKVSIFGGLDQRGIFPQT*KTFYLE
Trigger: TTCCAGATAGAATGTTTTTCACGTTTGTGGGAAGAT...TCCTCTCTGATCCAGACCACCAAAAATACTCACTTTGAGTGAGAATTTTTCAAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp GTTGAAAAATTCTCACTCAAAGTGAGTATTTTTGGTGGTCTGGATCAGAGAGGAAATGGATTTGTACAATaGCAACTTGCAGAACCTTTC +
Preference number: 2 (lower is better)
Translates to: VEKFSLKVSIFGGLDQRGNGFVQ*QLAEPF
Trigger: GAAAGGTTCTGCAAGTTGCCATTGTACAAATCCATT...TCCTCTCTGATCCAGACCACCAAAAATACTCACTTTGAGTGAGAATTTTTCAAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR GCA 90 bp CAGAACCTTTCCCCCACTCTACAAATTAACAACTTGCTCTGTTTAATACTACATCTTCGCTCCTTTGTTTaGTTCTTTTACTTAGAAGTC +
Preference number: 2 (lower is better)
Translates to: QNLSPTLQINNLLCLILHLRSFV*FFYLEV
Trigger: GACTTCTAAGTAAAAGAAGCAAACAAAGGAGCGAAG...ATGTAGTATTAAACAGAGCAAGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTG
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CCA 90 bp ACATATTGTCACTTTGCTGGTACCTGTATCATTTCACTAAAGAGAAAAACTGACTCAGAATTCAGAACATaGCATTTTCCTGTCCCTTTC +
Preference number: 2 (lower is better)
Translates to: TYCHFAGTCIISLKRKTDSEFRT*HFPVPF
Trigger: GAAAGGGACAGGAAAATGCCATGTTCTGAATTCTGA...GTCAGTTTTTCTCTTTAGTGAAATGATACAGGTACCAGCAAAGTGACAATATGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CAA 90 bp AATGGCAACTTGCAGAACCTTTCCCCCACTCTACAAATTAACAACTaGCTCTGTTTAATACTACATTATTGGAAAGATATGTTCTTGTCT +
Preference number: 2 (lower is better)
Translates to: NGNLQNLSPTLQINN*LCLILHYWKDMFLS
Trigger: AGACAAGAACATATCTTTCCAATAATGTAGTATTAAACAGAGCAAGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTGCAAGTTGCCATT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR GCA 72 bp CTGCATGAGGAGAAGGGAGGAGGATGGACGGCAGAGTaGGGGCGGGCATTCCCACAGACCAAGGTGGGGGAG +
Preference number: 3 (lower is better)
Translates to: LHEEKGGGWTAE*GRAFPQTKVGE
Trigger: CTCCCCCACCTTGGTCTGTGGGAATGCCCGCCCGCACTCTGCCGTCCATCCTCCTCCCTTCTCCTCATGCAG
65% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp ATGGACGGCAGAGTGCGGGCGGGCATTCCCACAGACCAAGGTGGGGGAGTCACTTCCTTCACTTGTAGGTaGGCCCTGGGGACTGGGTGT +
Preference number: 3 (lower is better)
Translates to: MDGRVRAGIPTDQGGGVTSFTCR*ALGTGC
Trigger: ACACCCAGTCCCCAGGGCCAACCTACAAGTGAAGGA...AGTGACTCCCCCACCTTGGTCTGTGGGAATGCCCGCCCGCACTCTGCCGTCCAT
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CCA 72 bp GGAGCCAGGCTGGCAGGCAGCCCTTGGCCGGCCCTTTaGGAACAAGGGCTCAGAGACATCCATTCATTCGAT +
Preference number: 3 (lower is better)
Translates to: GARLAGSPWPAL*EQGLRDIHSFD
Trigger: ATCGAATGAATGGATGTCTCTGAGCCCTTGTTCCCAAAGGGCCGGCCAAGGGCTGCCTGCCAGCCTGGCTCC
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp ATGGACGGCAGAGTGCGGGCGGGCATTCCCACAGACCAAGGTGGGGGAGTCACTTCCACAGTCTCCATCTaGGTCTCTGGCTCTTTCCTC +
Preference number: 3 (lower is better)
Translates to: MDGRVRAGIPTDQGGGVTSTVSI*VSGSFL
Trigger: GAGGAAAGAGCCAGAGACCAAGATGGAGACTGTGGA...AGTGACTCCCCCACCTTGGTCTGTGGGAATGCCCGCCCGCACTCTGCCGTCCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR GCA 72 bp ATCTTGGTCTCTGGCTCTTTCCTCTGGAGCCTGTGCTaGCTACCCAAGGCACTGTGGGTGGCCCAAGGAGGT +
Preference number: 3 (lower is better)
Translates to: ILVSGSFLWSLC*LPKALWVAQGG
Trigger: ACCTCCTTGGGCCACCCACAGTGCCTTGGGTAGGCAGCACAGGCTCCAGAGGAAAGAGCCAGAGACCAAGAT
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CCA 72 bp CTATCATTTGGTCATGCAGGGTTGATGGAGCCAGGCTaGCAGGCAGCCCTTGGCCGGCCCTTTGGGAACAAG +
Preference number: 3 (lower is better)
Translates to: LSFGHAGLMEPG*QAALGRPFGNK
Trigger: CTTGTTCCCAAAGGGCCGGCCAAGGGCTGCCTGCCAGCCTGGCTCCATCAACCCTGCATGACCAAATGATAG
60% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR TCA 72 bp CCTGAGCTGTGGTCCCAGAAGTGCCTGCTTCAAGGCTaGCCAGTTTCCAGCACCTGGTGGGATGATTGCCGT +
Preference number: 3 (lower is better)
Translates to: PELWSQKCLLQG*PVSSTWWDDCR
Trigger: ACGGCAATCATCCCACCAGGTGCTGGAAACTGGTCAGCCTTGAAGCAGGCACTTCTGGGACCACAGCTCAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CCA 72 bp CCTAGAGACCTGTCTCCTTCACTTGTAGGTTGGCCCTaGGGACTGGGTGTCCGGACCCAGGTAGAGTGCTTT +
Preference number: 3 (lower is better)
Translates to: PRDLSPSLVGWP*GLGVRTQVECF
Trigger: AAAGCACTCTACCTGGGTCCGGACACCCAGTCCCCAGGGCCAACCTACAAGTGAAGGAGACAGGTCTCTAGG
58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR TCA 72 bp CCTGGGGCTGCTCACTCAGAGGAAGTTGTCAGGGTCTaGCTCCAAGTCCAGGAAAGATGCTACTTGTGGCAG +
Preference number: 3 (lower is better)
Translates to: PGAAHSEEVVRV*LQVQERCYLWQ
Trigger: CTGCCACAAGTAGCATCTTTCCTGGACTTGGAGTCAGACCCTGACAACTTCCTCTGAGTGAGCAGCCCCAGG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR GCA 72 bp TGGCCCTGGGGACTGGGTGTCCGGACCCAGGTAGAGTaGTTTGAGAGGAGTTGTAGGGAATTTCATCGAACT +
Preference number: 3 (lower is better)
Translates to: WPWGLGVRTQVE*FERSCREFHRT
Trigger: AGTTCGATGAAATTCCCTACAACTCCTCTCAAAGCACTCTACCTGGGTCCGGACACCCAGTCCCCAGGGCCA
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR GCA 72 bp AAATACACATCCCTGAGCTGTGGTCCCAGAAGTGCCTaGTTCAAGGCTGACCAGTTTCCAGCACCTGGTGGG +
Preference number: 3 (lower is better)
Translates to: KYTSLSCGPRSA*FKADQFPAPGG
Trigger: CCCACCAGGTGCTGGAAACTGGTCAGCCTTGAAGCAGGCACTTCTGGGACCACAGCTCAGGGATGTGTATTT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR GCA 72 bp ATAGGCAAGCTTGCGTTCAGTTCAGTGGCCTGGGGCTaGTCACTCAGAGGAAGTTGTCAGGGTCTGACTCCA +
Preference number: 3 (lower is better)
Translates to: IGKLAFSSVAWG*SLRGSCQGLTP
Trigger: TGGAGTCAGACCCTGACAACTTCCTCTGAGTGAGCAGCCCCAGGCCACTGAACTGAACGCAAGCTTGCCTAT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR GCA 72 bp AAAAGTCTTGAGGAAGCCCAGACCCATAGGCAAGCTTaGGTTCAGTTCAGTGGCCTGGGGCTGCTCACTCAG +
Preference number: 3 (lower is better)
Translates to: KSLEEAQTHRQA*VQFSGLGLLTQ
Trigger: CTGAGTGAGCAGCCCCAGGCCACTGAACTGAACGCAAGCTTGCCTATGGGTCTGGGCTTCCTCAAGACTTTT
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp GGACAGGGAGGTTCCTGCCTGCTTCCCTCTACCCTAGAGACCTGTCTCCTTCACTTGTACAATGGCAACTaGCAGAACCTTTCCCCCACT +
Preference number: 3 (lower is better)
Translates to: GQGGSCLLPSTLETCLLHLYNGN*QNLSPT
Trigger: AGTGGGGGAAAGGTTCTGCAAGTTGCCATTGTACAA...GTGAAGGAGACAGGTCTCTAGGGTAGAGGGAAGCAGGCAGGAACCTCCCTGTCC
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR TCA 72 bp TCCTACATAGGACTGTGGGAGGACTGGGAGGTAGCCTaGGGTAGGTTCATGATGCACTTGCCATCAGAGTCC +
Preference number: 3 (lower is better)
Translates to: SYIGLWEDWEVA*GRFMMHLPSES
Trigger: GGACTCTGATGGCAAGTGCATCATGAACCTACCTCAGGCTACCTCCCAGTCCTCCCACAGTCCTATGTAGGA
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CCA 72 bp CTTCCATTTGAGCCTACAGCTGATACCCAAGCGAGCTaGGTGTACTTAGGACTGCCAGATAAGACCCTGGGC +
Preference number: 3 (lower is better)
Translates to: LPFEPTADTQAS*VYLGLPDKTLG
Trigger: GCCCAGGGTCTTATCTGGCAGTCCTAAGTACACCCAGCTCGCTTGGGTATCAGCTGTAGGCTCAAATGGAAG
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CCA 72 bp ATGCACTTGCCATCAGAGTCCCTGAAATCCAAGCTATaGAGCATAGGAAGGGGGTGGAGGCCTCTTCTAGCG +
Preference number: 3 (lower is better)
Translates to: MHLPSESLKSKL*SIGRGWRPLLA
Trigger: CGCTAGAAGAGGCCTCCACCCCCTTCCTATGCTCCATAGCTTGGATTTCAGGGACTCTGATGGCAAGTGCAT
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp CGGGCATTCCCACAGACCAAGGTGGGGGAGTCACTGAGTGCGCTTGCTTTCTTTTTCTGCCCTTCAGGCTaGTGGGATGAGATGATCAAA +
Preference number: 3 (lower is better)
Translates to: RAFPQTKVGESLSALAFFFCPSG*WDEMIK
Trigger: TTTGATCATCTCATCCCACAAGCCTGAAGGGCAGAA...AAAGAAAGCAAGCGCACTCAGTGACTCCCCCACCTTGGTCTGTGGGAATGCCCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp CGGGCATTCCCACAGACCAAGGTGGGGGAGTCACTGAGTGCGCTTGCTTTCTTTTTGTACAATGGCAACTaGCAGAACCTTTCCCCCACT +
Preference number: 3 (lower is better)
Translates to: RAFPQTKVGESLSALAFFLYNGN*QNLSPT
Trigger: AGTGGGGGAAAGGTTCTGCAAGTTGCCATTGTACAA...AAAGAAAGCAAGCGCACTCAGTGACTCCCCCACCTTGGTCTGTGGGAATGCCCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 15 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR TCA 72 bp CCTCTTCTAGCGATGGCTTGTCCCTATTTGGGCAGGTaGAAAGGACTCCCCAGACACTGCCCAGACATTACA +
Preference number: 3 (lower is better)
Translates to: PLLAMACPYLGR*KGLPRHCPDIT
Trigger: TGTAATGTCTGGGCAGTGTCTGGGGAGTCCTTTTCACCTGCCCAAATAGGGACAAGCCATCGCTAGAAGAGG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR GCA 72 bp GAAAAGGCAGGGGGAAACCTCTATGTTTCAGCACAGTaGAAGGAGGTGGGCTCTCCTTCTCCACATGGCTTT +
Preference number: 3 (lower is better)
Translates to: EKAGGNLYVSAQ*KEVGSPSPHGF
Trigger: AAAGCCATGTGGAGAAGGAGAGCCCACCTCCTTGCACTGTGCTGAAACATAGAGGTTTCCCCCTGCCTTTTC
53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR GCA 72 bp ACTTCCACTGTTCTAAGATCAGGACAGGGAGGTTCCTaGCTGCTTCCCTCTACCCTAGAGACCTGTCTCCTT +
Preference number: 3 (lower is better)
Translates to: TSTVLRSGQGGS*LLPSTLETCLL
Trigger: AAGGAGACAGGTCTCTAGGGTAGAGGGAAGCAGGCAGGAACCTCCCTGTCCTGATCTTAGAACAGTGGAAGT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CCA 72 bp TCCCTGAAATCCAAGCTATGGAGCATAGGAAGGGGGTaGAGGCCTCTTCTAGCGATGGCTTGTCCCTATTTG +
Preference number: 3 (lower is better)
Translates to: SLKSKLWSIGRG*RPLLAMACPYL
Trigger: CAAATAGGGACAAGCCATCGCTAGAAGAGGCCTCCACCCCCTTCCTATGCTCCATAGCTTGGATTTCAGGGA
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp GGACAGGGAGGTTCCTGCCTGCTTCCCTCTACCCTAGAGACCTGTCTCCTTCACACATCAAAGGACATATaGTCACTTTGCTGGTACCTG +
Preference number: 3 (lower is better)
Translates to: GQGGSCLLPSTLETCLLHTSKDI*SLCWYL
Trigger: CAGGTACCAGCAAAGTGACAATATGTCCTTTGATGT...GTGAAGGAGACAGGTCTCTAGGGTAGAGGGAAGCAGGCAGGAACCTCCCTGTCC
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp CAATACAGCCACAAGCTCCTATCACAGGCCTGGGATGGCAACACAGACAAAAACGGAACACACAGCCACTaGGCTCAGAGATTCTGCAGG +
Preference number: 3 (lower is better)
Translates to: QYSHKLLSQAWDGNTDKNGTHSH*AQRFCR
Trigger: CCTGCAGAATCTCTGAGCCAAGTGGCTGTGTGTTCC...GTTTTTGTCTGTGTTGCCATCCCAGGCCTGTGATAGGAGCTTGTGGCTGTATTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp CAAGGAGGTGGGCTCTCCTTCTCCACATGGCTTTGGGGGCTATATGTTTTTATGGGAACACACAGCCACTaGGCTCAGAGATTCTGCAGG +
Preference number: 3 (lower is better)
Translates to: QGGGLSFSTWLWGLYVFMGTHSH*AQRFCR
Trigger: CCTGCAGAATCTCTGAGCCAAGTGGCTGTGTGTTCC...CATAAAAACATATAGCCCCCAAAGCCATGTGGAGAAGGAGAGCCCACCTCCTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp GGGAGCTACAGTATTCTTTTCCCACAGGACTCCTCAGAGAGGAATCGACCAGGAGAGCAAGAGAACCCTTaGGCTGGCTTCCAGGTTAGA +
Preference number: 3 (lower is better)
Translates to: GSYSILFPQDSSERNRPGEQENP*AGFQVR
Trigger: TCTAACCTGGAAGCCAGCCAAAGGGTTCTCTTGCTC...TCCTGGTCGATTCCTCTCTGAGGAGTCCTGTGGGAAAAGAATACTGTAGCTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp CAATACAGCCACAAGCTCCTATCACAGGCCTGGGATGGCAACACAGACAAAAACTCCACAGTCTCCATCTaGGTCTCTGGCTCTTTCCTC +
Preference number: 3 (lower is better)
Translates to: QYSHKLLSQAWDGNTDKNSTVSI*VSGSFL
Trigger: GAGGAAAGAGCCAGAGACCAAGATGGAGACTGTGGA...GTTTTTGTCTGTGTTGCCATCCCAGGCCTGTGATAGGAGCTTGTGGCTGTATTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp CGGGCATTCCCACAGACCAAGGTGGGGGAGTCACTGAGTGCGCTTGCTTTCTTTCTACATACTGGCTTATaGTTAGGACTCTACCTGGAT +
Preference number: 3 (lower is better)
Translates to: RAFPQTKVGESLSALAFFLHTGL*LGLYLD
Trigger: ATCCAGGTAGAGTCCTAACAATAAGCCAGTATGTAG...AAAGAAAGCAAGCGCACTCAGTGACTCCCCCACCTTGGTCTGTGGGAATGCCCG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR TCA 72 bp GCCTTGGTAGATCTAGAACAGCAAACTAGGCAGCTATaGGCTACAAGGGCGCTGGGAGGCAAGTCCTACATA +
Preference number: 3 (lower is better)
Translates to: ALVDLEQQTRQL*ATRALGGKSYI
Trigger: TATGTAGGACTTGCCTCCCAGCGCCCTTGTAGCTCATAGCTGCCTAGTTTGCTGTTCTAGATCTACCAAGGC
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CCA 72 bp GGAGCATGTGTCTGGGGTACTAGTGGTAGGAGAGCCTaGTACAAAGAAAGGGAAAAGCAGCTGAAACAGCTC +
Preference number: 3 (lower is better)
Translates to: GACVWGTSGRRA*YKEREKQLKQL
Trigger: GAGCTGTTTCAGCTGCTTTTCCCTTTCTTTGTACCAGGCTCTCCTACCACTAGTACCCCAGACACATGCTCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp CACAACAGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTGTTCAGAGGATAAGGTaGGGTGAGAACAGCGACTTC +
Preference number: 3 (lower is better)
Translates to: HNSPGFHSRQKHVNSTGAVQRIR*GENSDF
Trigger: GAAGTCGCTGTTCTCACCCAACCTTATCCTCTGAAC...AGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACTGTTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp GGGAGCTACAGTATTCTTTTCCCACAGGACTCCTCAGAGAGGAATCGACCAGGATTGTACAATGGCAACTaGCAGAACCTTTCCCCCACT +
Preference number: 3 (lower is better)
Translates to: GSYSILFPQDSSERNRPGLYNGN*QNLSPT
Trigger: AGTGGGGGAAAGGTTCTGCAAGTTGCCATTGTACAA...TCCTGGTCGATTCCTCTCTGAGGAGTCCTGTGGGAAAAGAATACTGTAGCTCCC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp AGCTACAGTATTCTTTTCCCACAGGACTCCTCAGAGAGGAATCGACCAGGATGTCAGGAAAGATGCTACTaGTGGCAGCCAAGAGAGGCT +
Preference number: 3 (lower is better)
Translates to: SYSILFPQDSSERNRPGCQERCY*WQPREA
Trigger: AGCCTCTCTTGGCTGCCACAAGTAGCATCTTTCCTG...ACATCCTGGTCGATTCCTCTCTGAGGAGTCCTGTGGGAAAAGAATACTGTAGCT
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR TCA 72 bp CAGATAAGACCCTGGGCAAAGGGTCTAGGCTTCTCATaGGCACTAGAGAAGCTCACGTGTAAGACGGTCAAA +
Preference number: 3 (lower is better)
Translates to: QIRPWAKGLGFS*ALEKLTCKTVK
Trigger: TTTGACCGTCTTACACGTGAGCTTCTCTAGTGCTCATGAGAAGCCTAGACCCTTTGCCCAGGGTCTTATCTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CCA 72 bp AACAGCAAACTAGGCAGCTATGAGCTACAAGGGCGCTaGGAGGCAAGTCCTACATACTGGCTTATTGTTAGG +
Preference number: 3 (lower is better)
Translates to: NSKLGSYELQGR*EASPTYWLIVR
Trigger: CCTAACAATAAGCCAGTATGTAGGACTTGCCTCCCAGCGCCCTTGTAGCTCATAGCTGCCTAGTTTGCTGTT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp TGGAGGCACTACCTAGGAGGCACAGGATGCTGTTGTCTCCAGGGTAAGTTAATATTCTGCCCTTCAGGCTaGTGGGATGAGATGATCAAA +
Preference number: 3 (lower is better)
Translates to: WRHYLGGTGCCCLQGKLIFCPSG*WDEMIK
Trigger: TTTGATCATCTCATCCCACAAGCCTGAAGGGCAGAA...TATTAACTTACCCTGGAGACAACAGCATCCTGTGCCTCCTAGGTAGTGCCTCCA
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp AGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTACAGTAGTTCAGAGGATAAGGTaGGGTGAGAACAGCGACTTC +
Preference number: 3 (lower is better)
Translates to: SPGFHSRQKHVNSTGATVVQRIR*GENSDF
Trigger: GAAGTCGCTGTTCTCACCCAACCTTATCCTCTGAAC...TACTGTAGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp AGTAGCACATTTTTCTTGGGTTTGGAGCAGGCCTTAGCCTTTCCCACAGCTTCCCTCCACACTTCTGCCTaGGGTCAAGAAAGCATACAT +
Preference number: 3 (lower is better)
Translates to: SSTFFLGLEQALAFPTASLHTSA*GQESIH
Trigger: ATGTATGCTTTCTTGACCCAAGGCAGAAGTGTGGAG...GGAAGCTGTGGGAAAGGCTAAGGCCTGCTCCAAACCCAAGAAAAATGTGCTACT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR GCA 72 bp ACTGACAAATGGAGGCACTACCTAGGAGGCACAGGATaGTGTTGTCTCCAGGGTAAGTTAATAGGCTTCACT +
Preference number: 3 (lower is better)
Translates to: TDKWRHYLGGTG*CCLQGKLIGFT
Trigger: AGTGAAGCCTATTAACTTACCCTGGAGACAACAGCATCCTGTGCCTCCTAGGTAGTGCCTCCATTTGTCAGT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp CAATACAGCCACAAGCTCCTATCACAGGCCTGGGATGGCAACACAGACAAAAACTACCTGGATGAAAACTaGACAGCAGCATCAACAGAC +
Preference number: 3 (lower is better)
Translates to: QYSHKLLSQAWDGNTDKNYLDEN*TAASTD
Trigger: GTCTGTTGATGCTGCTGTCAAGTTTTCATCCAGGTA...GTTTTTGTCTGTGTTGCCATCCCAGGCCTGTGATAGGAGCTTGTGGCTGTATTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp GTCCGGACCCAGGTAGAGTGCTTTGAGAGGAGTTGTAGGGAATTTCATCGAACTAGCATGTGCATCATGTaGAAGGCCATACATTCAACT +
Preference number: 3 (lower is better)
Translates to: VRTQVECFERSCREFHRTSMCIM*KAIHST
Trigger: AGTTGAATGTATGGCCTTCAACATGATGCACATGCT...AGTTCGATGAAATTCCCTACAACTCCTCTCAAAGCACTCTACCTGGGTCCGGAC
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp TGGAGGCACTACCTAGGAGGCACAGGATGCTGTTGTCTCCAGGGTAAGTTAATAAGCATGTGCATCATGTaGAAGGCCATACATTCAACT +
Preference number: 3 (lower is better)
Translates to: WRHYLGGTGCCCLQGKLISMCIM*KAIHST
Trigger: AGTTGAATGTATGGCCTTCAACATGATGCACATGCT...TATTAACTTACCCTGGAGACAACAGCATCCTGTGCCTCCTAGGTAGTGCCTCCA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp CACAACAGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTACATCAAAGGACATATaGTCACTTTGCTGGTACCTG +
Preference number: 3 (lower is better)
Translates to: HNSPGFHSRQKHVNSTGATSKDI*SLCWYL
Trigger: CAGGTACCAGCAAAGTGACAATATGTCCTTTGATGT...AGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACTGTTGTG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp GGGAGCTACAGTATTCTTTTCCCACAGGACTCCTCAGAGAGGAATCGACCAGGATGGAAAGATATGTTCTaGTCTCATCAGAGCTTTGAC +
Preference number: 3 (lower is better)
Translates to: GSYSILFPQDSSERNRPGWKDMF*SHQSFD
Trigger: GTCAAAGCTCTGATGAGACAAGAACATATCTTTCCA...TCCTGGTCGATTCCTCTCTGAGGAGTCCTGTGGGAAAAGAATACTGTAGCTCCC
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CCA 72 bp AGCACAGTGCAAGGAGGTGGGCTCTCCTTCTCCACATaGCTTTGGGGGCTATATGTTTTTATGGTTGAAAAA +
Preference number: 3 (lower is better)
Translates to: STVQGGGLSFST*LWGLYVFMVEK
Trigger: TTTTTCAACCATAAAAACATATAGCCCCCAAAGCCATGTGGAGAAGGAGAGCCCACCTCCTTGCACTGTGCT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CCA 72 bp ACATTACAATACAGCCACAAGCTCCTATCACAGGCCTaGGATGGCAACACAGACAAAAACACAACAGTCCAG +
Preference number: 3 (lower is better)
Translates to: TLQYSHKLLSQA*DGNTDKNTTVQ
Trigger: CTGGACTGTTGTGTTTTTGTCTGTGTTGCCATCCCAGGCCTGTGATAGGAGCTTGTGGCTGTATTGTAATGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp CAATACAGCCACAAGCTCCTATCACAGGCCTGGGATGGCAACACAGACAAAAACATGATCAAAATCAAATaGCCTCTCAGATGTCCCACT +
Preference number: 3 (lower is better)
Translates to: QYSHKLLSQAWDGNTDKNMIKIK*PLRCPT
Trigger: AGTGGGACATCTGAGAGGCAATTTGATTTTGATCAT...GTTTTTGTCTGTGTTGCCATCCCAGGCCTGTGATAGGAGCTTGTGGCTGTATTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp GTCCGGACCCAGGTAGAGTGCTTTGAGAGGAGTTGTAGGGAATTTCATCGAACTATGATCAAAATCAAATaGCCTCTCAGATGTCCCACT +
Preference number: 3 (lower is better)
Translates to: VRTQVECFERSCREFHRTMIKIK*PLRCPT
Trigger: AGTGGGACATCTGAGAGGCAATTTGATTTTGATCAT...AGTTCGATGAAATTCCCTACAACTCCTCTCAAAGCACTCTACCTGGGTCCGGAC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp AGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTACAGTACTACATACTGGCTTATaGTTAGGACTCTACCTGGAT +
Preference number: 3 (lower is better)
Translates to: SPGFHSRQKHVNSTGATVLHTGL*LGLYLD
Trigger: ATCCAGGTAGAGTCCTAACAATAAGCCAGTATGTAG...TACTGTAGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACT
46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp AGTAGCACATTTTTCTTGGGTTTGGAGCAGGCCTTAGCCTTTCCCACAGCTTCCTGGCAGTTTTGGATTTaGGATTTGGTTCAGAGGATA +
Preference number: 3 (lower is better)
Translates to: SSTFFLGLEQALAFPTASWQFWI*DLVQRI
Trigger: TATCCTCTGAACCAAATCCAAAATCCAAAACTGCCA...GGAAGCTGTGGGAAAGGCTAAGGCCTGCTCCAAACCCAAGAAAAATGTGCTACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp AGTAGCACATTTTTCTTGGGTTTGGAGCAGGCCTTAGCCTTTCCCACAGCTTCCTGGAAAGATATGTTCTaGTCTCATCAGAGCTTTGAC +
Preference number: 3 (lower is better)
Translates to: SSTFFLGLEQALAFPTASWKDMF*SHQSFD
Trigger: GTCAAAGCTCTGATGAGACAAGAACATATCTTTCCA...GGAAGCTGTGGGAAAGGCTAAGGCCTGCTCCAAACCCAAGAAAAATGTGCTACT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CCA 72 bp CAGAAGGTAAGGCAGAGTTTCTGCCCTTCAGGCTTGTaGGATGAGATGATCAAAATCAAATTGCCTCTCAGA +
Preference number: 3 (lower is better)
Translates to: QKVRQSFCPSGL*DEMIKIKLPLR
Trigger: TCTGAGAGGCAATTTGATTTTGATCATCTCATCCCACAAGCCTGAAGGGCAGAAACTCTGCCTTACCTTCTG
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CCA 72 bp GCGACTTCCAAAGAAGTCTTTATTCTTTCAGCAGCCTaGTCTTTGCCCCTCTACCTTTTGAGGGAAACAATG +
Preference number: 3 (lower is better)
Translates to: ATSKEVFILSAA*SLPLYLLRETM
Trigger: CATTGTTTCCCTCAAAAGGTAGAGGGGCAAAGACCAGGCTGCTGAAAGAATAAAGACTTCTTTGGAAGTCGC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CCA 72 bp GGGCTTCTCTGGGTCTTGACTTTCTGTTCTAGACCCTaGCAAACAAATCTCATTTTGGGACTAATGGGAGAA +
Preference number: 3 (lower is better)
Translates to: GLLWVLTFCSRP*QTNLILGLMGE
Trigger: TTCTCCCATTAGTCCCAAAATGAGATTTGTTTGCCAGGGTCTAGAACAGAAAGTCAAGACCCAGAGAAGCCC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp GCAAGGAGGTGGGCTCTCCTTCTCCACATGGCTTTGGGGGCTATATGTTTTTATACTTCGCTCCTTTGTTaGCTTCTTTTACTTAGAAGT +
Preference number: 3 (lower is better)
Translates to: ARRWALLLHMALGAICFYTSLLC*LLLLRS
Trigger: ACTTCTAAGTAAAAGAAGCAAACAAAGGAGCGAAGT...ATAAAAACATATAGCCCCCAAAGCCATGTGGAGAAGGAGAGCCCACCTCCTTGC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp CAATACAGCCACAAGCTCCTATCACAGGCCTGGGATGGCAACACAGACAAAAACACTTCGCTCCTTTGTTaGCTTCTTTTACTTAGAAGT +
Preference number: 3 (lower is better)
Translates to: QYSHKLLSQAWDGNTDKNTSLLC*LLLLRS
Trigger: ACTTCTAAGTAAAAGAAGCAAACAAAGGAGCGAAGT...GTTTTTGTCTGTGTTGCCATCCCAGGCCTGTGATAGGAGCTTGTGGCTGTATTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp GATTTGTACAATGGCAACTTGCAGAACCTTTCCCCCACTCTACAAATTAACAACGTTCAGAGGATAAGGTaGGGTGAGAACAGCGACTTC +
Preference number: 3 (lower is better)
Translates to: DLYNGNLQNLSPTLQINNVQRIR*GENSDF
Trigger: GAAGTCGCTGTTCTCACCCAACCTTATCCTCTGAAC...GTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTGCAAGTTGCCATTGTACAAATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp AGCTACAGTATTCTTTTCCCACAGGACTCCTCAGAGAGGAATCGACCAGGATGTTGGCAGTTTTGGATTTaGGATTTGGTTCAGAGGATA +
Preference number: 3 (lower is better)
Translates to: SYSILFPQDSSERNRPGCWQFWI*DLVQRI
Trigger: TATCCTCTGAACCAAATCCAAAATCCAAAACTGCCA...ACATCCTGGTCGATTCCTCTCTGAGGAGTCCTGTGGGAAAAGAATACTGTAGCT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp ACTAAGGGTGAGACTACCAAACCTTGCAAAGGACAAAAATGGCCTTTAAAGGGACTCCACACTTCTGCCTaGGGTCAAGAAAGCATACAT +
Preference number: 3 (lower is better)
Translates to: TKGETTKPCKGQKWPLKGLHTSA*GQESIH
Trigger: ATGTATGCTTTCTTGACCCAAGGCAGAAGTGTGGAG...TCCCTTTAAAGGCCATTTTTGTCCTTTGCAAGGTTTGGTAGTCTCACCCTTAGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR TCA 72 bp GGCAGTTTGCTCTCTAACAGACAAGTGTGTATCTGCTaGGAAAATGTGGAAAAGGTAGGGATGGTCATACAC +
Preference number: 3 (lower is better)
Translates to: GSLLSNRQVCIC*ENVEKVGMVIH
Trigger: GTGTATGACCATCCCTACCTTTTCCACATTTTCTCAGCAGATACACACTTGTCTGTTAGAGAGCAAACTGCC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR TCA 72 bp CCTACATACTGGCTTATTGTTAGGACTCTACCTGGATaGAAACTTGACAGCAGCATCAACAGACAACAGCGT +
Preference number: 3 (lower is better)
Translates to: PTYWLIVRTLPG*KLDSSINRQQR
Trigger: ACGCTGTTGTCTGTTGATGCTGCTGTCAAGTTTTCATCCAGGTAGAGTCCTAACAATAAGCCAGTATGTAGG
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR TCA 72 bp CAGAACATGGCATTTTCCTGTCCCTTTCTAAAGGACTaGCAGGAAGTCAAATTCATAAGAGGTAGGGATGGG +
Preference number: 3 (lower is better)
Translates to: QNMAFSCPFLKD*QEVKFIRGRDG
Trigger: CCCATCCCTACCTCTTATGAATTTGACTTCCTGTCAGTCCTTTAGAAAGGGACAGGAAAATGCCATGTTCTG
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR TCA 72 bp GTCCTTCAAACCAAAATCACAAATACATCTAGTGGCTaGCCTAATGTCTCCACGCTGCTAGCTACACTCCTA +
Preference number: 3 (lower is better)
Translates to: VLQTKITNTSSG*PNVSTLLATLL
Trigger: TAGGAGTGTAGCTAGCAGCGTGGAGACATTAGGTCAGCCACTAGATGTATTTGTGATTTTGGTTTGAAGGAC
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR GCA 72 bp ACCAATTTGATAAATGGAAGTCTAAGCAAAGAAGGCTaGTGTGTGCACAGAGGTGCTGTCTCTGAACTGTGT +
Preference number: 3 (lower is better)
Translates to: TNLINGSLSKEG*CVHRGAVSELC
Trigger: ACACAGTTCAGAGACAGCACCTCTGTGCACACAGCAGCCTTCTTTGCTTAGACTTCCATTTATCAAATTGGT
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp CAGAACCTTTCCCCCACTCTACAAATTAACAACTTGCTCTGTTTAATACTACATTCCACAGTCTCCATCTaGGTCTCTGGCTCTTTCCTC +
Preference number: 3 (lower is better)
Translates to: QNLSPTLQINNLLCLILHSTVSI*VSGSFL
Trigger: GAGGAAAGAGCCAGAGACCAAGATGGAGACTGTGGA...ATGTAGTATTAAACAGAGCAAGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTG
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR GCA 72 bp GAATTTCATCGAACTAAGGGTGAGACTACCAAACCTTaGAAAGGACAAAAATGGCCTTTAAAGGGAGCCAGA +
Preference number: 3 (lower is better)
Translates to: EFHRTKGETTKP*KGQKWPLKGAR
Trigger: TCTGGCTCCCTTTAAAGGCCATTTTTGTCCTTTGCAAGGTTTGGTAGTCTCACCCTTAGTTCGATGAAATTC
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp ATTTGTACAATGGCAACTTGCAGAACCTTTCCCCCACTCTACAAATTAACAACTTTCTGCCCTTCAGGCTaGTGGGATGAGATGATCAAA +
Preference number: 3 (lower is better)
Translates to: ICTMATCRTFPPLYKLTTFCPSG*WDEMIK
Trigger: TTTGATCATCTCATCCCACAAGCCTGAAGGGCAGAA...AGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTGCAAGTTGCCATTGTACAAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp TGGCCTTTAAAGGGAGCCAGAGAACAGGAATTACAAAGCTCTAAGACTCCACACTTTTGGATTTTGGATTaGGTTCAGAGGATAAGGTTG +
Preference number: 3 (lower is better)
Translates to: WPLKGAREQELQSSKTPHFWILD*VQRIRL
Trigger: CAACCTTATCCTCTGAACCAAATCCAAAATCCAAAA...GTGTGGAGTCTTAGAGCTTTGTAATTCCTGTTCTCTGGCTCCCTTTAAAGGCCA
42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp AATGGGAGAACTTACAACAAAAATTTGCAGCAAAGTTTCTGGTCCTTTCTACTGTACCTGGATGAAAACTaGACAGCAGCATCAACAGAC +
Preference number: 3 (lower is better)
Translates to: NGRTYNKNLQQSFWSFLLYLDEN*TAASTD
Trigger: GTCTGTTGATGCTGCTGTCAAGTTTTCATCCAGGTA...CAGTAGAAAGGACCAGAAACTTTGCTGCAAATTTTTGTTGTAAGTTCTCCCATT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp AACTTGCAGAACCTTTCCCCCACTCTACAAATTAACAACTTGCTCTGTTTAATATACCTGGATGAAAACTaGACAGCAGCATCAACAGAC +
Preference number: 3 (lower is better)
Translates to: NLQNLSPTLQINNLLCLIYLDEN*TAASTD
Trigger: GTCTGTTGATGCTGCTGTCAAGTTTTCATCCAGGTA...TATTAAACAGAGCAAGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTGCAAGTT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp ATTTGTACAATGGCAACTTGCAGAACCTTTCCCCCACTCTACAAATTAACAACTTGGCAGTTTTGGATTTaGGATTTGGTTCAGAGGATA +
Preference number: 3 (lower is better)
Translates to: ICTMATCRTFPPLYKLTTWQFWI*DLVQRI
Trigger: TATCCTCTGAACCAAATCCAAAATCCAAAACTGCCA...AGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTGCAAGTTGCCATTGTACAAAT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR TCA 72 bp TTGGATTTTGGATTTGGTTCAGAGGATAAGGTTGGGTaGGAACAGCGACTTCCAAAGAAGTCTTTATTCTTT +
Preference number: 3 (lower is better)
Translates to: LDFGFGSEDKVG*EQRLPKKSLFF
Trigger: AAAGAATAAAGACTTCTTTGGAAGTCGCTGTTCTCACCCAACCTTATCCTCTGAACCAAATCCAAAATCCAA
39% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp GTTGAAAAATTCTCACTCAAAGTGAGTATTTTTGGTGGTCTGGATCAGAGAGGAACTTCGCTCCTTTGTTaGCTTCTTTTACTTAGAAGT +
Preference number: 3 (lower is better)
Translates to: VEKFSLKVSIFGGLDQRGTSLLC*LLLLRS
Trigger: ACTTCTAAGTAAAAGAAGCAAACAAAGGAGCGAAGT...TCCTCTCTGATCCAGACCACCAAAAATACTCACTTTGAGTGAGAATTTTTCAAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp CAGAACCTTTCCCCCACTCTACAAATTAACAACTTGCTCTGTTTAATACTACATATGATCAAAATCAAATaGCCTCTCAGATGTCCCACT +
Preference number: 3 (lower is better)
Translates to: QNLSPTLQINNLLCLILHMIKIK*PLRCPT
Trigger: AGTGGGACATCTGAGAGGCAATTTGATTTTGATCAT...ATGTAGTATTAAACAGAGCAAGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTG
38% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR-3UTR CAA 90 bp ATTTGTACAATGGCAACTTGCAGAACCTTTCCCCCACTCTACAAATTAACAACTTTTTGGATTTTGGATTaGGTTCAGAGGATAAGGTTG +
Preference number: 3 (lower is better)
Translates to: ICTMATCRTFPPLYKLTTFWILD*VQRIRL
Trigger: CAACCTTATCCTCTGAACCAAATCCAAAATCCAAAA...AGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTGCAAGTTGCCATTGTACAAAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR GCA 90 bp CATCAACAGACAACAGCGTGTGGGGGAGGGGTGCAGCAGAAGGTAAGGCAGAGTCCTGACAGAAACCGTTaGGCGGCGGCGGAGGGAGCG +
Preference number: 4 (lower is better)
Translates to: HQQTTACGGGVQQKVRQSPDRNR*AAAEGA
Trigger: CGCTCCCTCCGCCGCCGCGCAACGGTTTCTGTCAGG...ACTCTGCCTTACCTTCTGCTGCACCCCTCCCCCACACGCTGTTGTCTGTTGATG
62% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 2 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
CDS-3UTR GCA 90 bp ATGGACGGCAGAGTGCGGGCGGGCATTCCCACAGACCAAGGTGGGGGAGTCACTTCTGGACTGGTCCAATaGTCTTGTTCCGGCCTCCAG +
Preference number: 4 (lower is better)
Translates to: MDGRVRAGIPTDQGGGVTSGLVQ*SCSGLQ
Trigger: CTGGAGGCCGGAACAAGAGCATTGGACCAGTCCAGA...AGTGACTCCCCCACCTTGGTCTGTGGGAATGCCCGCCCGCACTCTGCCGTCCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CCA 90 bp CATCAACAGACAACAGCGTGTGGGGGAGGGGTGCAGCAGAAGGTAAGGCAGAGTTCCCCCTCCGCTAGGTaGCCGTTCGTCCCGCTCCAT +
Preference number: 4 (lower is better)
Translates to: HQQTTACGGGVQQKVRQSSPSAR*PFVPLH
Trigger: ATGGAGCGGGACGAACGGCCACCTAGCGGAGGGGGA...ACTCTGCCTTACCTTCTGCTGCACCCCTCCCCCACACGCTGTTGTCTGTTGATG
61% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 2 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
3UTR CAA 72 bp TGGAGCCAGGCTGGCAGGCAGCCCTTGGCCGGCCCTTaGGGAACAAGGGCTCAGAGACATCCATTCATTCGA +
Preference number: 4 (lower is better)
Translates to: WSQAGRQPLAGP*GTRAQRHPFIR
Trigger: TCGAATGAATGGATGTCTCTGAGCCCTTGTTCCCAAAGGGCCGGCCAAGGGCTGCCTGCCAGCCTGGCTCCA
61% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp ATGGACGGCAGAGTGCGGGCGGGCATTCCCACAGACCAAGGTGGGGGAGTCACTTCTGCTTCCGGGACATaGCACAGTTCTTGTCACGAC +
Preference number: 4 (lower is better)
Translates to: MDGRVRAGIPTDQGGGVTSASGT*HSSCHD
Trigger: GTCGTGACAAGAACTGTGTCATGTCCCGGAAGCAGA...AGTGACTCCCCCACCTTGGTCTGTGGGAATGCCCGCCCGCACTCTGCCGTCCAT
60% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp ATGGACGGCAGAGTGCGGGCGGGCATTCCCACAGACCAAGGTGGGGGAGTCACTTGGGGGCAAAAGTGGTaGGTGGCCAGAATAGCTAAA +
Preference number: 4 (lower is better)
Translates to: MDGRVRAGIPTDQGGGVTWGQKW*VARIAK
Trigger: TTTAGCTATTCTGGCCACTCACCACTTTTGCCCCCA...AGTGACTCCCCCACCTTGGTCTGTGGGAATGCCCGCCCGCACTCTGCCGTCCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR GCA 90 bp ATGGACGGCAGAGTGCGGGCGGGCATTCCCACAGACCAAGGTGGGGGAGTCACTCGCTGTCACCATGGTTaGTCCAGTGATTGGCTTCTT +
Preference number: 4 (lower is better)
Translates to: MDGRVRAGIPTDQGGGVTRCHHG*SSDWLL
Trigger: AAGAAGCCAATCACTGGAGCAACCATGGTGACAGCG...AGTGACTCCCCCACCTTGGTCTGTGGGAATGCCCGCCCGCACTCTGCCGTCCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR GCA 90 bp ATGGACGGCAGAGTGCGGGCGGGCATTCCCACAGACCAAGGTGGGGGAGTCACTCTTGTCTTGCAGGAGTaGAGCACCACCTTAAAGAGG +
Preference number: 4 (lower is better)
Translates to: MDGRVRAGIPTDQGGGVTLVLQE*STTLKR
Trigger: CCTCTTTAAGGTGGTGCTGCACTCCTGCAAGACAAG...AGTGACTCCCCCACCTTGGTCTGTGGGAATGCCCGCCCGCACTCTGCCGTCCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp GCCTCTTCTAGCGATGGCTTGTCCCTATTTGGGCAGGTGAAAAGGACTCCCCAGAGCCCTCGCAGGAGATaGTCCCATAGTGCAAGCCCG +
Preference number: 4 (lower is better)
Translates to: ASSSDGLSLFGQVKRTPQSPRRR*SHSASP
Trigger: CGGGCTTGCACTATGGGATCATCTCCTGCGAGGGCT...CTGGGGAGTCCTTTTCACCTGCCCAAATAGGGACAAGCCATCGCTAGAAGAGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp ATGGACGGCAGAGTGCGGGCGGGCATTCCCACAGACCAAGGTGGGGGAGTCACTATAATGTGGAGGCACTaGCATCCCCATGTACTGATC +
Preference number: 4 (lower is better)
Translates to: MDGRVRAGIPTDQGGGVTIMWRH*HPHVLI
Trigger: GATCAGTACATGGGGATGTCAGTGCCTCCACATTAT...AGTGACTCCCCCACCTTGGTCTGTGGGAATGCCCGCCCGCACTCTGCCGTCCAT
58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp CATCAACAGACAACAGCGTGTGGGGGAGGGGTGCAGCAGAAGGTAAGGCAGAGTGTGAGTACTTGGCTGTaGCATCAGCCAGCTCCCCAA +
Preference number: 4 (lower is better)
Translates to: HQQTTACGGGVQQKVRQSVSTWL*HQPAPQ
Trigger: TTGGGGAGCTGGCTGATGTCACAGCCAAGTACTCAC...ACTCTGCCTTACCTTCTGCTGCACCCCTCCCCCACACGCTGTTGTCTGTTGATG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR GCA 90 bp CGGGCATTCCCACAGACCAAGGTGGGGGAGTCACTGAGTGCGCTTGCTTTCTTTTCTGGACTGGTCCAATaGTCTTGTTCCGGCCTCCAG +
Preference number: 4 (lower is better)
Translates to: RAFPQTKVGESLSALAFFSGLVQ*SCSGLQ
Trigger: CTGGAGGCCGGAACAAGAGCATTGGACCAGTCCAGA...AAAGAAAGCAAGCGCACTCAGTGACTCCCCCACCTTGGTCTGTGGGAATGCCCG
57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp GGACAGGGAGGTTCCTGCCTGCTTCCCTCTACCCTAGAGACCTGTCTCCTTCACGGCACGTGTAATCCTTaGTTGAGAGCTCGCAGAAGA +
Preference number: 4 (lower is better)
Translates to: GQGGSCLLPSTLETCLLHGTCNP*LRARRR
Trigger: TCTTCTGCGAGCTCTCAATCAAGGATTACACGTGCC...GTGAAGGAGACAGGTCTCTAGGGTAGAGGGAAGCAGGCAGGAACCTCCCTGTCC
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp CGGGCATTCCCACAGACCAAGGTGGGGGAGTCACTGAGTGCGCTTGCTTTCTTTCGTACTCCTCGTTGCTaGCCTTCAGCTGATGGAACT +
Preference number: 4 (lower is better)
Translates to: RAFPQTKVGESLSALAFFRTPRC*PSADGT
Trigger: AGTTCCATCAGCTGAAGGTCAGCAACGAGGAGTACG...AAAGAAAGCAAGCGCACTCAGTGACTCCCCCACCTTGGTCTGTGGGAATGCCCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR GCA 90 bp CATCAACAGACAACAGCGTGTGGGGGAGGGGTGCAGCAGAAGGTAAGGCAGAGTTCACCGTACTTGTCTTaGAGGAGTGCAGCACCACCT +
Preference number: 4 (lower is better)
Translates to: HQQTTACGGGVQQKVRQSSPYLS*RSAAPP
Trigger: AGGTGGTGCTGCACTCCTGCAAGACAAGTACGGTGA...ACTCTGCCTTACCTTCTGCTGCACCCCTCCCCCACACGCTGTTGTCTGTTGATG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CCA 90 bp GCCTCTTCTAGCGATGGCTTGTCCCTATTTGGGCAGGTGAAAAGGACTCCCCAGTTCCCAGGGGAACTGTaGTCGCTGTCACCATGGTTG +
Preference number: 4 (lower is better)
Translates to: ASSSDGLSLFGQVKRTPQFPGEL*SLSPWL
Trigger: CAACCATGGTGACAGCGACCACAGTTCCCCTGGGAA...CTGGGGAGTCCTTTTCACCTGCCCAAATAGGGACAAGCCATCGCTAGAAGAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CCA 90 bp ATGGACGGCAGAGTGCGGGCGGGCATTCCCACAGACCAAGGTGGGGGAGTCACTGATGTATCGGATCTCTaGCAAGCACATCATAAGATC +
Preference number: 4 (lower is better)
Translates to: MDGRVRAGIPTDQGGGVTDVSDL*QAHHKI
Trigger: GATCTTATGATGTGCTTGCCAGAGATCCGATACATC...AGTGACTCCCCCACCTTGGTCTGTGGGAATGCCCGCCCGCACTCTGCCGTCCAT
56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CAA 72 bp TCTTGTGATGGAGGTAGCTGCTCCACAGTCTCCATCTaGGTCTCTGGCTCTTTCCTCTGGAGCCTGTGCTGC +
Preference number: 4 (lower is better)
Translates to: SCDGGSCSTVSI*VSGSFLWSLCC
Trigger: GCAGCACAGGCTCCAGAGGAAAGAGCCAGAGACCAAGATGGAGACTGTGGAGCAGCTACCTCCATCACAAGA
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CAA 72 bp CAGTTCAGTGGCCTGGGGCTGCTCACTCAGAGGAAGTaGTCAGGGTCTGACTCCAAGTCCAGGAAAGATGCT +
Preference number: 4 (lower is better)
Translates to: QFSGLGLLTQRK*SGSDSKSRKDA
Trigger: AGCATCTTTCCTGGACTTGGAGTCAGACCCTGACAACTTCCTCTGAGTGAGCAGCCCCAGGCCACTGAACTG
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp CAATACAGCCACAAGCTCCTATCACAGGCCTGGGATGGCAACACAGACAAAAACAGCCCTCGCAGGAGATaGTCCCATAGTGCAAGCCCG +
Preference number: 4 (lower is better)
Translates to: QYSHKLLSQAWDGNTDKNSPRRR*SHSASP
Trigger: CGGGCTTGCACTATGGGATCATCTCCTGCGAGGGCT...GTTTTTGTCTGTGTTGCCATCCCAGGCCTGTGATAGGAGCTTGTGGCTGTATTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp GGGAGCTACAGTATTCTTTTCCCACAGGACTCCTCAGAGAGGAATCGACCAGGACCATCTGGAGACACTTaGGCAGGCGGCAGTACTGAC +
Preference number: 4 (lower is better)
Translates to: GSYSILFPQDSSERNRPGPSGDT*AGGSTD
Trigger: GTCAGTACTGCCGCCTGCTCAAGTGTCTCCAGATGG...TCCTGGTCGATTCCTCTCTGAGGAGTCCTGTGGGAAAAGAATACTGTAGCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp CATCAACAGACAACAGCGTGTGGGGGAGGGGTGCAGCAGAAGGTAAGGCAGAGTCCATGGTTGCTCCAGTaGTTGGCTTCTTCCTCAAAC +
Preference number: 4 (lower is better)
Translates to: HQQTTACGGGVQQKVRQSPWLLQ*LASSSN
Trigger: GTTTGAGGAAGAAGCCAATCACTGGAGCAACCATGG...ACTCTGCCTTACCTTCTGCTGCACCCCTCCCCCACACGCTGTTGTCTGTTGATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp CGGGCATTCCCACAGACCAAGGTGGGGGAGTCACTGAGTGCGCTTGCTTTCTTTCCATGGTTGCTCCAGTaGTTGGCTTCTTCCTCAAAC +
Preference number: 4 (lower is better)
Translates to: RAFPQTKVGESLSALAFFPWLLQ*LASSSN
Trigger: GTTTGAGGAAGAAGCCAATCACTGGAGCAACCATGG...AAAGAAAGCAAGCGCACTCAGTGACTCCCCCACCTTGGTCTGTGGGAATGCCCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp GGACAGGGAGGTTCCTGCCTGCTTCCCTCTACCCTAGAGACCTGTCTCCTTCACTTCTTCATCAGAGGGTaGGTACTTGGCTGTGACATC +
Preference number: 4 (lower is better)
Translates to: GQGGSCLLPSTLETCLLHFFIRG*VLGCDI
Trigger: GATGTCACAGCCAAGTACTCACCCTCTGATGAAGAA...GTGAAGGAGACAGGTCTCTAGGGTAGAGGGAAGCAGGCAGGAACCTCCCTGTCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR GCA 90 bp CGGGCATTCCCACAGACCAAGGTGGGGGAGTCACTGAGTGCGCTTGCTTTCTTTAGCTCCCCAAAGATCTaGTTGCTGTACACTGTGAGG +
Preference number: 4 (lower is better)
Translates to: RAFPQTKVGESLSALAFFSSPKI*LLYTVR
Trigger: CCTCACAGTGTACAGCAAGCAGATCTTTGGGGAGCT...AAAGAAAGCAAGCGCACTCAGTGACTCCCCCACCTTGGTCTGTGGGAATGCCCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR GCA 90 bp CAAGGAGGTGGGCTCTCCTTCTCCACATGGCTTTGGGGGCTATATGTTTTTATGAAGAGGAGGGGCAGCTaGTCCAGGGGCACATTCACC +
Preference number: 4 (lower is better)
Translates to: QGGGLSFSTWLWGLYVFMKRRGS*SRGTFT
Trigger: GGTGAATGTGCCCCTGGAGCAGCTGCCCCTCCTCTT...CATAAAAACATATAGCCCCCAAAGCCATGTGGAGAAGGAGAGCCCACCTCCTTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR GCA 90 bp CAATACAGCCACAAGCTCCTATCACAGGCCTGGGATGGCAACACAGACAAAAACAAGAGGAGGGGCAGCTaGTCCAGGGGCACATTCACC +
Preference number: 4 (lower is better)
Translates to: QYSHKLLSQAWDGNTDKNKRRGS*SRGTFT
Trigger: GGTGAATGTGCCCCTGGAGCAGCTGCCCCTCCTCTT...GTTTTTGTCTGTGTTGCCATCCCAGGCCTGTGATAGGAGCTTGTGGCTGTATTG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CCA 90 bp CATCAACAGACAACAGCGTGTGGGGGAGGGGTGCAGCAGAAGGTAAGGCAGAGTGTTCCACAGACCTACTaGATGATAGTGTGGAGCCTG +
Preference number: 4 (lower is better)
Translates to: HQQTTACGGGVQQKVRQSVPQTY*MIVWSL
Trigger: CAGGCTCCACACTATCATCCAGTAGGTCTGTGGAAC...ACTCTGCCTTACCTTCTGCTGCACCCCTCCCCCACACGCTGTTGTCTGTTGATG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp CACAACAGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTCGCGGTCCCCACAGATaGGACAGGTTCGTTGTTCAG +
Preference number: 4 (lower is better)
Translates to: HNSPGFHSRQKHVNSTGARGPHR*DRFVVQ
Trigger: CTGAACAACGAACCTGTCTCATCTGTGGGGACCGCG...AGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACTGTTGTG
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp TGGCCTTTAAAGGGAGCCAGAGAACAGGAATTACAAAGCTCTAAGACTCCACACGGGCTGGTTGCTCTCTaGAGCCCTGTTCCCAGGGGA +
Preference number: 4 (lower is better)
Translates to: WPLKGAREQELQSSKTPHGLVAL*SPVPRG
Trigger: TCCCCTGGGAACAGGGCTTCAGAGAGCAACCAGCCC...GTGTGGAGTCTTAGAGCTTTGTAATTCCTGTTCTCTGGCTCCCTTTAAAGGCCA
53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR GCA 90 bp CGGGCATTCCCACAGACCAAGGTGGGGGAGTCACTGAGTGCGCTTGCTTTCTTTGCCTGGATCAAGCTCTaGCAATTCATCCTGACAGAA +
Preference number: 4 (lower is better)
Translates to: RAFPQTKVGESLSALAFFAWIKL*QFILTE
Trigger: TTCTGTCAGGATGAATTGGCAGAGCTTGATCCAGGC...AAAGAAAGCAAGCGCACTCAGTGACTCCCCCACCTTGGTCTGTGGGAATGCCCG
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
CDS-3UTR TCA 90 bp GCAAGGAGGTGGGCTCTCCTTCTCCACATGGCTTTGGGGGCTATATGTTTTTATTCTGCCAATTCATCCTaGCAGAAACCGTTGCGCGGC +
Preference number: 4 (lower is better)
Translates to: ARRWALLLHMALGAICFYSANSS*QKPLRG
Trigger: GCCGCGCAACGGTTTCTGTCAGGATGAATTGGCAGA...ATAAAAACATATAGCCCCCAAAGCCATGTGGAGAAGGAGAGCCCACCTCCTTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
CDS-3UTR TCA 90 bp CAAGGAGGTGGGCTCTCCTTCTCCACATGGCTTTGGGGGCTATATGTTTTTATGTCTGCCAATTCATCCTaGCAGAAACCGTTGCGCGGC +
Preference number: 4 (lower is better)
Translates to: QGGGLSFSTWLWGLYVFMSANSS*QKPLRG
Trigger: GCCGCGCAACGGTTTCTGTCAGGATGAATTGGCAGA...CATAAAAACATATAGCCCCCAAAGCCATGTGGAGAAGGAGAGCCCACCTCCTTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 2 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
CDS-3UTR TCA 90 bp CACAACAGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTAGCAGGCGGCAGTACTaGCATCTGTTCCTCTGCTTC +
Preference number: 4 (lower is better)
Translates to: HNSPGFHSRQKHVNSTGASRRQY*HLFLCF
Trigger: GAAGCAGAGGAACAGATGTCAGTACTGCCGCCTGCT...AGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACTGTTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp AGCTACAGTATTCTTTTCCCACAGGACTCCTCAGAGAGGAATCGACCAGGATGTCCATCTGGAGACACTTaGGCAGGCGGCAGTACTGAC +
Preference number: 4 (lower is better)
Translates to: SYSILFPQDSSERNRPGCPSGDT*AGGSTD
Trigger: GTCAGTACTGCCGCCTGCTCAAGTGTCTCCAGATGG...ACATCCTGGTCGATTCCTCTCTGAGGAGTCCTGTGGGAAAAGAATACTGTAGCT
52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp GCAAGGAGGTGGGCTCTCCTTCTCCACATGGCTTTGGGGGCTATATGTTTTTATGTGAGTACTTGGCTGTaGCATCAGCCAGCTCCCCAA +
Preference number: 4 (lower is better)
Translates to: ARRWALLLHMALGAICFYVSTWL*HQPAPQ
Trigger: TTGGGGAGCTGGCTGATGTCACAGCCAAGTACTCAC...ATAAAAACATATAGCCCCCAAAGCCATGTGGAGAAGGAGAGCCCACCTCCTTGC
52% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CCA 90 bp CACAAACGTGAAAAACATTCTATCTGGAACTTTTTCTCTCTCAAGTGGCTGGGGTCCCCCTCCGCTAGGTaGCCGTTCGTCCCGCTCCAT +
Preference number: 4 (lower is better)
Translates to: HKREKHSIWNFFSLKWLGSPSAR*PFVPLH
Trigger: ATGGAGCGGGACGAACGGCCACCTAGCGGAGGGGGA...CCCCAGCCACTTGAGAGAGAAAAAGTTCCAGATAGAATGTTTTTCACGTTTGTG
52% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 2 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
CDS-3UTR TCA 90 bp CAATACAGCCACAAGCTCCTATCACAGGCCTGGGATGGCAACACAGACAAAAACTCTGCTTCCGGGACATaGCACAGTTCTTGTCACGAC +
Preference number: 4 (lower is better)
Translates to: QYSHKLLSQAWDGNTDKNSASGT*HSSCHD
Trigger: GTCGTGACAAGAACTGTGTCATGTCCCGGAAGCAGA...GTTTTTGTCTGTGTTGCCATCCCAGGCCTGTGATAGGAGCTTGTGGCTGTATTG
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp AGTAGCACATTTTTCTTGGGTTTGGAGCAGGCCTTAGCCTTTCCCACAGCTTCCCGTACTCCTCGTTGCTaGCCTTCAGCTGATGGAACT +
Preference number: 4 (lower is better)
Translates to: SSTFFLGLEQALAFPTASRTPRC*PSADGT
Trigger: AGTTCCATCAGCTGAAGGTCAGCAACGAGGAGTACG...GGAAGCTGTGGGAAAGGCTAAGGCCTGCTCCAAACCCAAGAAAAATGTGCTACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR GCA 90 bp GGGAGCTACAGTATTCTTTTCCCACAGGACTCCTCAGAGAGGAATCGACCAGGAAGCAGGATTAACTCCTaGCACGTAGAGCTCAAGAGG +
Preference number: 4 (lower is better)
Translates to: GSYSILFPQDSSERNRPGSRINS*HVELKR
Trigger: CCTCTTGAGCTCTACGTGGCAGGAGTTAATCCTGCT...TCCTGGTCGATTCCTCTCTGAGGAGTCCTGTGGGAAAAGAATACTGTAGCTCCC
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CCA 90 bp AGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTACAGTATTCCCAGGGGAACTGTaGTCGCTGTCACCATGGTTG +
Preference number: 4 (lower is better)
Translates to: SPGFHSRQKHVNSTGATVFPGEL*SLSPWL
Trigger: CAACCATGGTGACAGCGACCACAGTTCCCCTGGGAA...TACTGTAGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACT
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp ACTAAGGGTGAGACTACCAAACCTTGCAAAGGACAAAAATGGCCTTTAAAGGGAAGCCCTCGCAGGAGATaGTCCCATAGTGCAAGCCCG +
Preference number: 4 (lower is better)
Translates to: TKGETTKPCKGQKWPLKGSPRRR*SHSASP
Trigger: CGGGCTTGCACTATGGGATCATCTCCTGCGAGGGCT...TCCCTTTAAAGGCCATTTTTGTCCTTTGCAAGGTTTGGTAGTCTCACCCTTAGT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp GATTTGTACAATGGCAACTTGCAGAACCTTTCCCCCACTCTACAAATTAACAACGGGCTGGTTGCTCTCTaGAGCCCTGTTCCCAGGGGA +
Preference number: 4 (lower is better)
Translates to: DLYNGNLQNLSPTLQINNGLVAL*SPVPRG
Trigger: TCCCCTGGGAACAGGGCTTCAGAGAGCAACCAGCCC...GTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTGCAAGTTGCCATTGTACAAATC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp CGGGCATTCCCACAGACCAAGGTGGGGGAGTCACTGAGTGCGCTTGCTTTCTTTTATTCAGTGAAATCCTaGCAAATGTACCAATACCGC +
Preference number: 4 (lower is better)
Translates to: RAFPQTKVGESLSALAFFYSVKS*QMYQYR
Trigger: GCGGTATTGGTACATTTGTCAGGATTTCACTGAATA...AAAGAAAGCAAGCGCACTCAGTGACTCCCCCACCTTGGTCTGTGGGAATGCCCG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR GCA 90 bp AATGGGAGAACTTACAACAAAAATTTGCAGCAAAGTTTCTGGTCCTTTCTACTGCCTGACAGAAACCGTTaGGCGGCGGCGGAGGGAGCG +
Preference number: 4 (lower is better)
Translates to: NGRTYNKNLQQSFWSFLLPDRNR*AAAEGA
Trigger: CGCTCCCTCCGCCGCCGCGCAACGGTTTCTGTCAGG...CAGTAGAAAGGACCAGAAACTTTGCTGCAAATTTTTGTTGTAAGTTCTCCCATT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
CDS-3UTR GCA 90 bp CAAGGAGGTGGGCTCTCCTTCTCCACATGGCTTTGGGGGCTATATGTTTTTATGCGCTGTCACCATGGTTaGTCCAGTGATTGGCTTCTT +
Preference number: 4 (lower is better)
Translates to: QGGGLSFSTWLWGLYVFMRCHHG*SSDWLL
Trigger: AAGAAGCCAATCACTGGAGCAACCATGGTGACAGCG...CATAAAAACATATAGCCCCCAAAGCCATGTGGAGAAGGAGAGCCCACCTCCTTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR GCA 90 bp TGGAGGCACTACCTAGGAGGCACAGGATGCTGTTGTCTCCAGGGTAAGTTAATAAGCAGGATTAACTCCTaGCACGTAGAGCTCAAGAGG +
Preference number: 4 (lower is better)
Translates to: WRHYLGGTGCCCLQGKLISRINS*HVELKR
Trigger: CCTCTTGAGCTCTACGTGGCAGGAGTTAATCCTGCT...TATTAACTTACCCTGGAGACAACAGCATCCTGTGCCTCCTAGGTAGTGCCTCCA
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR GCA 90 bp CAATACAGCCACAAGCTCCTATCACAGGCCTGGGATGGCAACACAGACAAAAACAGCTCCCCAAAGATCTaGTTGCTGTACACTGTGAGG +
Preference number: 4 (lower is better)
Translates to: QYSHKLLSQAWDGNTDKNSSPKI*LLYTVR
Trigger: CCTCACAGTGTACAGCAAGCAGATCTTTGGGGAGCT...GTTTTTGTCTGTGTTGCCATCCCAGGCCTGTGATAGGAGCTTGTGGCTGTATTG
50% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR GCA 90 bp AGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTACAGTATCACCGTACTTGTCTTaGAGGAGTGCAGCACCACCT +
Preference number: 4 (lower is better)
Translates to: SPGFHSRQKHVNSTGATVSPYLS*RSAAPP
Trigger: AGGTGGTGCTGCACTCCTGCAAGACAAGTACGGTGA...TACTGTAGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CCA 90 bp TGGCCTTTAAAGGGAGCCAGAGAACAGGAATTACAAAGCTCTAAGACTCCACACTTCCCAGGGGAACTGTaGTCGCTGTCACCATGGTTG +
Preference number: 4 (lower is better)
Translates to: WPLKGAREQELQSSKTPHFPGEL*SLSPWL
Trigger: CAACCATGGTGACAGCGACCACAGTTCCCCTGGGAA...GTGTGGAGTCTTAGAGCTTTGTAATTCCTGTTCTCTGGCTCCCTTTAAAGGCCA
50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CCA 90 bp CACAACAGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTGTTCCACAGACCTACTaGATGATAGTGTGGAGCCTG +
Preference number: 4 (lower is better)
Translates to: HNSPGFHSRQKHVNSTGAVPQTY*MIVWSL
Trigger: CAGGCTCCACACTATCATCCAGTAGGTCTGTGGAAC...AGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACTGTTGTG
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp ACTAAGGGTGAGACTACCAAACCTTGCAAAGGACAAAAATGGCCTTTAAAGGGACGCGGTCCCCACAGATaGGACAGGTTCGTTGTTCAG +
Preference number: 4 (lower is better)
Translates to: TKGETTKPCKGQKWPLKGRGPHR*DRFVVQ
Trigger: CTGAACAACGAACCTGTCTCATCTGTGGGGACCGCG...TCCCTTTAAAGGCCATTTTTGTCCTTTGCAAGGTTTGGTAGTCTCACCCTTAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp AGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTACAGTATGCAAATGCTCCTCTTaGAAAACCCCTTGCAGCCCT +
Preference number: 4 (lower is better)
Translates to: SPGFHSRQKHVNSTGATVCKCSS*KTPCSP
Trigger: AGGGCTGCAAGGGGTTTTTCAAGAGGAGCATTTGCA...TACTGTAGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp ACTAAGGGTGAGACTACCAAACCTTGCAAAGGACAAAAATGGCCTTTAAAGGGACCATCTGGAGACACTTaGGCAGGCGGCAGTACTGAC +
Preference number: 4 (lower is better)
Translates to: TKGETTKPCKGQKWPLKGPSGDT*AGGSTD
Trigger: GTCAGTACTGCCGCCTGCTCAAGTGTCTCCAGATGG...TCCCTTTAAAGGCCATTTTTGTCCTTTGCAAGGTTTGGTAGTCTCACCCTTAGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp AGCTACAGTATTCTTTTCCCACAGGACTCCTCAGAGAGGAATCGACCAGGATGTCCATGGTTGCTCCAGTaGTTGGCTTCTTCCTCAAAC +
Preference number: 4 (lower is better)
Translates to: SYSILFPQDSSERNRPGCPWLLQ*LASSSN
Trigger: GTTTGAGGAAGAAGCCAATCACTGGAGCAACCATGG...ACATCCTGGTCGATTCCTCTCTGAGGAGTCCTGTGGGAAAAGAATACTGTAGCT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp TGGAGGCACTACCTAGGAGGCACAGGATGCTGTTGTCTCCAGGGTAAGTTAATAGACATCCCCATGTACTaGTCCCTGAATGCCATGAAT +
Preference number: 4 (lower is better)
Translates to: WRHYLGGTGCCCLQGKLIDIPMY*SLNAMN
Trigger: ATTCATGGCATTCAGGGATCAGTACATGGGGATGTC...TATTAACTTACCCTGGAGACAACAGCATCCTGTGCCTCCTAGGTAGTGCCTCCA
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp CCTTTAAAGGGAGCCAGAGAACAGGAATTACAAAGCTCTAAGACTCCACACTTCGTGAGTACTTGGCTGTaGCATCAGCCAGCTCCCCAA +
Preference number: 4 (lower is better)
Translates to: PLKGAREQELQSSKTPHFVSTWL*HQPAPQ
Trigger: TTGGGGAGCTGGCTGATGTCACAGCCAAGTACTCAC...GAAGTGTGGAGTCTTAGAGCTTTGTAATTCCTGTTCTCTGGCTCCCTTTAAAGG
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp CAAGGAGGTGGGCTCTCCTTCTCCACATGGCTTTGGGGGCTATATGTTTTTATGTTCTTCATCAGAGGGTaGGTACTTGGCTGTGACATC +
Preference number: 4 (lower is better)
Translates to: QGGGLSFSTWLWGLYVFMFFIRG*VLGCDI
Trigger: GATGTCACAGCCAAGTACTCACCCTCTGATGAAGAA...CATAAAAACATATAGCCCCCAAAGCCATGTGGAGAAGGAGAGCCCACCTCCTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp GCCTCTTCTAGCGATGGCTTGTCCCTATTTGGGCAGGTGAAAAGGACTCCCCAGGGAAAGCGGTTTGGCTaGTGTGTGTATTTATATTCA +
Preference number: 4 (lower is better)
Translates to: ASSSDGLSLFGQVKRTPQGKRFG*CVYLYS
Trigger: TGAATATAAATACACACATCAGCCAAACCGCTTTCC...CTGGGGAGTCCTTTTCACCTGCCCAAATAGGGACAAGCCATCGCTAGAAGAGGC
49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR GCA 90 bp CACAACAGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTTTGATCCAGGCAATCTaGCTAAAGAGCAACTCGTCG +
Preference number: 4 (lower is better)
Translates to: HNSPGFHSRQKHVNSTGALIQAI*LKSNSS
Trigger: CGACGAGTTGCTCTTTAGGCAGATTGCCTGGATCAA...AGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACTGTTGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR GCA 90 bp CAAGGAGGTGGGCTCTCCTTCTCCACATGGCTTTGGGGGCTATATGTTTTTATGTTGATCCAGGCAATCTaGCTAAAGAGCAACTCGTCG +
Preference number: 4 (lower is better)
Translates to: QGGGLSFSTWLWGLYVFMLIQAI*LKSNSS
Trigger: CGACGAGTTGCTCTTTAGGCAGATTGCCTGGATCAA...CATAAAAACATATAGCCCCCAAAGCCATGTGGAGAAGGAGAGCCCACCTCCTTG
49% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CAA 72 bp AAGGGCGCTGGGAGGCAAGTCCTACATACTGGCTTATaGTTAGGACTCTACCTGGATGAAAACTTGACAGCA +
Preference number: 4 (lower is better)
Translates to: KGAGRQVLHTGL*LGLYLDENLTA
Trigger: TGCTGTCAAGTTTTCATCCAGGTAGAGTCCTAACAATAAGCCAGTATGTAGGACTTGCCTCCCAGCGCCCTT
49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CAA 72 bp AGACTAGCTTCCACCAGTAGCACATTTTTCTTGGGTTaGGAGCAGGCCTTAGCCTTTCCCACAGCTTCCATT +
Preference number: 4 (lower is better)
Translates to: RLASTSSTFFLG*EQALAFPTASI
Trigger: AATGGAAGCTGTGGGAAAGGCTAAGGCCTGCTCCAAACCCAAGAAAAATGTGCTACTGGTGGAAGCTAGTCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp AGCTACAGTATTCTTTTCCCACAGGACTCCTCAGAGAGGAATCGACCAGGATGTGACATCCCCATGTACTaGTCCCTGAATGCCATGAAT +
Preference number: 4 (lower is better)
Translates to: SYSILFPQDSSERNRPGCDIPMY*SLNAMN
Trigger: ATTCATGGCATTCAGGGATCAGTACATGGGGATGTC...ACATCCTGGTCGATTCCTCTCTGAGGAGTCCTGTGGGAAAAGAATACTGTAGCT
48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR GCA 90 bp AGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTACAGTAAGTTCTTGTCACGACTaGACCGATACACCCGTTTGT +
Preference number: 4 (lower is better)
Translates to: SPGFHSRQKHVNSTGATVSSCHD*TDTPVC
Trigger: ACAAACGGGTGTATCGGTGCAGTCGTGACAAGAACT...TACTGTAGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACT
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR GCA 90 bp TGGAGGCACTACCTAGGAGGCACAGGATGCTGTTGTCTCCAGGGTAAGTTAATAAATTGCTTTCATGCATaGGTACTCCTCGTTGCTGAC +
Preference number: 4 (lower is better)
Translates to: WRHYLGGTGCCCLQGKLINCFHA*VLLVAD
Trigger: GTCAGCAACGAGGAGTACGCATGCATGAAAGCAATT...TATTAACTTACCCTGGAGACAACAGCATCCTGTGCCTCCTAGGTAGTGCCTCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR GCA 90 bp CAAGGAGGTGGGCTCTCCTTCTCCACATGGCTTTGGGGGCTATATGTTTTTATGAATTGCTTTCATGCATaGGTACTCCTCGTTGCTGAC +
Preference number: 4 (lower is better)
Translates to: QGGGLSFSTWLWGLYVFMNCFHA*VLLVAD
Trigger: GTCAGCAACGAGGAGTACGCATGCATGAAAGCAATT...CATAAAAACATATAGCCCCCAAAGCCATGTGGAGAAGGAGAGCCCACCTCCTTG
48% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR GCA 90 bp GTTGAAAAATTCTCACTCAAAGTGAGTATTTTTGGTGGTCTGGATCAGAGAGGAAAGAGGAGGGGCAGCTaGTCCAGGGGCACATTCACC +
Preference number: 4 (lower is better)
Translates to: VEKFSLKVSIFGGLDQRGKRRGS*SRGTFT
Trigger: GGTGAATGTGCCCCTGGAGCAGCTGCCCCTCCTCTT...TCCTCTCTGATCCAGACCACCAAAAATACTCACTTTGAGTGAGAATTTTTCAAC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CCA 90 bp TGGCCTTTAAAGGGAGCCAGAGAACAGGAATTACAAAGCTCTAAGACTCCACACGTTCCACAGACCTACTaGATGATAGTGTGGAGCCTG +
Preference number: 4 (lower is better)
Translates to: WPLKGAREQELQSSKTPHVPQTY*MIVWSL
Trigger: CAGGCTCCACACTATCATCCAGTAGGTCTGTGGAAC...GTGTGGAGTCTTAGAGCTTTGTAATTCCTGTTCTCTGGCTCCCTTTAAAGGCCA
48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp ACTAAGGGTGAGACTACCAAACCTTGCAAAGGACAAAAATGGCCTTTAAAGGGATCTGCTTCCGGGACATaGCACAGTTCTTGTCACGAC +
Preference number: 4 (lower is better)
Translates to: TKGETTKPCKGQKWPLKGSASGT*HSSCHD
Trigger: GTCGTGACAAGAACTGTGTCATGTCCCGGAAGCAGA...TCCCTTTAAAGGCCATTTTTGTCCTTTGCAAGGTTTGGTAGTCTCACCCTTAGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp ACATATTGTCACTTTGCTGGTACCTGTATCATTTCACTAAAGAGAAAAACTGACGGGCTGGTTGCTCTCTaGAGCCCTGTTCCCAGGGGA +
Preference number: 4 (lower is better)
Translates to: TYCHFAGTCIISLKRKTDGLVAL*SPVPRG
Trigger: TCCCCTGGGAACAGGGCTTCAGAGAGCAACCAGCCC...GTCAGTTTTTCTCTTTAGTGAAATGATACAGGTACCAGCAAAGTGACAATATGT
47% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp CCTTTAAAGGGAGCCAGAGAACAGGAATTACAAAGCTCTAAGACTCCACACTTCGGCACGTGTAATCCTTaGTTGAGAGCTCGCAGAAGA +
Preference number: 4 (lower is better)
Translates to: PLKGAREQELQSSKTPHFGTCNP*LRARRR
Trigger: TCTTCTGCGAGCTCTCAATCAAGGATTACACGTGCC...GAAGTGTGGAGTCTTAGAGCTTTGTAATTCCTGTTCTCTGGCTCCCTTTAAAGG
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp ACTAAGGGTGAGACTACCAAACCTTGCAAAGGACAAAAATGGCCTTTAAAGGGATGCAAATGCTCCTCTTaGAAAACCCCTTGCAGCCCT +
Preference number: 4 (lower is better)
Translates to: TKGETTKPCKGQKWPLKGCKCSS*KTPCSP
Trigger: AGGGCTGCAAGGGGTTTTTCAAGAGGAGCATTTGCA...TCCCTTTAAAGGCCATTTTTGTCCTTTGCAAGGTTTGGTAGTCTCACCCTTAGT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp ATTTGTACAATGGCAACTTGCAGAACCTTTCCCCCACTCTACAAATTAACAACTAGCAGGCGGCAGTACTaGCATCTGTTCCTCTGCTTC +
Preference number: 4 (lower is better)
Translates to: ICTMATCRTFPPLYKLTTSRRQY*HLFLCF
Trigger: GAAGCAGAGGAACAGATGTCAGTACTGCCGCCTGCT...AGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTGCAAGTTGCCATTGTACAAAT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp TCTGTAAACTGCAAGGAAATGCATCTGCTGCATTCACACAAAAGCATGTGCATCTGGGGGCAAAAGTGGTaGGTGGCCAGAATAGCTAAA +
Preference number: 4 (lower is better)
Translates to: SVNCKEMHLLHSHKSMCIWGQKW*VARIAK
Trigger: TTTAGCTATTCTGGCCACTCACCACTTTTGCCCCCA...GATGCACATGCTTTTGTGTGAATGCAGCAGATGCATTTCCTTGCAGTTTACAGA
46% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp CACAAACGTGAAAAACATTCTATCTGGAACTTTTTCTCTCTCAAGTGGCTGGGGTGGGGGCAAAAGTGGTaGGTGGCCAGAATAGCTAAA +
Preference number: 4 (lower is better)
Translates to: HKREKHSIWNFFSLKWLGWGQKW*VARIAK
Trigger: TTTAGCTATTCTGGCCACTCACCACTTTTGCCCCCA...CCCCAGCCACTTGAGAGAGAAAAAGTTCCAGATAGAATGTTTTTCACGTTTGTG
46% GC, longest homopolymer 5 nt, total homopolymer stretches 23 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp AATGGGAGAACTTACAACAAAAATTTGCAGCAAAGTTTCTGGTCCTTTCTACTGCAGTTGTTCCAGCTGTaGGGCACTGGTCAGACCCCT +
Preference number: 4 (lower is better)
Translates to: NGRTYNKNLQQSFWSFLLQLFQL*GTGQTP
Trigger: AGGGGTCTGACCAGTGCCTCACAGCTGGAACAACTG...CAGTAGAAAGGACCAGAAACTTTGCTGCAAATTTTTGTTGTAAGTTCTCCCATT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp AACTTGCAGAACCTTTCCCCCACTCTACAAATTAACAACTTGCTCTGTTTAATACAGTTGTTCCAGCTGTaGGGCACTGGTCAGACCCCT +
Preference number: 4 (lower is better)
Translates to: NLQNLSPTLQINNLLCLIQLFQL*GTGQTP
Trigger: AGGGGTCTGACCAGTGCCTCACAGCTGGAACAACTG...TATTAAACAGAGCAAGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTGCAAGTT
46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR GCA 90 bp TCTGTAAACTGCAAGGAAATGCATCTGCTGCATTCACACAAAAGCATGTGCATCAGCAGGATTAACTCCTaGCACGTAGAGCTCAAGAGG +
Preference number: 4 (lower is better)
Translates to: SVNCKEMHLLHSHKSMCISRINS*HVELKR
Trigger: CCTCTTGAGCTCTACGTGGCAGGAGTTAATCCTGCT...GATGCACATGCTTTTGTGTGAATGCAGCAGATGCATTTCCTTGCAGTTTACAGA
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp ACATATTGTCACTTTGCTGGTACCTGTATCATTTCACTAAAGAGAAAAACTGACCGCGGTCCCCACAGATaGGACAGGTTCGTTGTTCAG +
Preference number: 4 (lower is better)
Translates to: TYCHFAGTCIISLKRKTDRGPHR*DRFVVQ
Trigger: CTGAACAACGAACCTGTCTCATCTGTGGGGACCGCG...GTCAGTTTTTCTCTTTAGTGAAATGATACAGGTACCAGCAAAGTGACAATATGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp GTCCGGACCCAGGTAGAGTGCTTTGAGAGGAGTTGTAGGGAATTTCATCGAACTACTCCTGTCCAGACATaGTTCTTTCAATTTCTTCTT +
Preference number: 4 (lower is better)
Translates to: VRTQVECFERSCREFHRTTPVQT*FFQFLL
Trigger: AAGAAGAAATTGAAAGAATCATGTCTGGACAGGAGT...AGTTCGATGAAATTCCCTACAACTCCTCTCAAAGCACTCTACCTGGGTCCGGAC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp CACAAACGTGAAAAACATTCTATCTGGAACTTTTTCTCTCTCAAGTGGCTGGGGATAATGTGGAGGCACTaGCATCCCCATGTACTGATC +
Preference number: 4 (lower is better)
Translates to: HKREKHSIWNFFSLKWLGIMWRH*HPHVLI
Trigger: GATCAGTACATGGGGATGTCAGTGCCTCCACATTAT...CCCCAGCCACTTGAGAGAGAAAAAGTTCCAGATAGAATGTTTTTCACGTTTGTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp ACATATTGTCACTTTGCTGGTACCTGTATCATTTCACTAAAGAGAAAAACTGACCAGTTGTTCCAGCTGTaGGGCACTGGTCAGACCCCT +
Preference number: 4 (lower is better)
Translates to: TYCHFAGTCIISLKRKTDQLFQL*GTGQTP
Trigger: AGGGGTCTGACCAGTGCCTCACAGCTGGAACAACTG...GTCAGTTTTTCTCTTTAGTGAAATGATACAGGTACCAGCAAAGTGACAATATGT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR GCA 90 bp CAGAACCTTTCCCCCACTCTACAAATTAACAACTTGCTCTGTTTAATACTACATTCTGGACTGGTCCAATaGTCTTGTTCCGGCCTCCAG +
Preference number: 4 (lower is better)
Translates to: QNLSPTLQINNLLCLILHSGLVQ*SCSGLQ
Trigger: CTGGAGGCCGGAACAAGAGCATTGGACCAGTCCAGA...ATGTAGTATTAAACAGAGCAAGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTG
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR GCA 90 bp GATTTGTACAATGGCAACTTGCAGAACCTTTCCCCCACTCTACAAATTAACAACCTTGTCTTGCAGGAGTaGAGCACCACCTTAAAGAGG +
Preference number: 4 (lower is better)
Translates to: DLYNGNLQNLSPTLQINNLVLQE*STTLKR
Trigger: CCTCTTTAAGGTGGTGCTGCACTCCTGCAAGACAAG...GTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTGCAAGTTGCCATTGTACAAATC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp ACATATTGTCACTTTGCTGGTACCTGTATCATTTCACTAAAGAGAAAAACTGACAGCAGGCGGCAGTACTaGCATCTGTTCCTCTGCTTC +
Preference number: 4 (lower is better)
Translates to: TYCHFAGTCIISLKRKTDSRRQY*HLFLCF
Trigger: GAAGCAGAGGAACAGATGTCAGTACTGCCGCCTGCT...GTCAGTTTTTCTCTTTAGTGAAATGATACAGGTACCAGCAAAGTGACAATATGT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp AGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTACAGTATTCAATTTCTTCTTCTaGTATCTGGACTGGTCCAAT +
Preference number: 4 (lower is better)
Translates to: SPGFHSRQKHVNSTGATVFNFFF*YLDWSN
Trigger: ATTGGACCAGTCCAGATATCAGAAGAAGAAATTGAA...TACTGTAGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACT
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp AATGGGAGAACTTACAACAAAAATTTGCAGCAAAGTTTCTGGTCCTTTCTACTGCGTACTCCTCGTTGCTaGCCTTCAGCTGATGGAACT +
Preference number: 4 (lower is better)
Translates to: NGRTYNKNLQQSFWSFLLRTPRC*PSADGT
Trigger: AGTTCCATCAGCTGAAGGTCAGCAACGAGGAGTACG...CAGTAGAAAGGACCAGAAACTTTGCTGCAAATTTTTGTTGTAAGTTCTCCCATT
43% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp TGGCCTTTAAAGGGAGCCAGAGAACAGGAATTACAAAGCTCTAAGACTCCACACGGAAAGCGGTTTGGCTaGTGTGTGTATTTATATTCA +
Preference number: 4 (lower is better)
Translates to: WPLKGAREQELQSSKTPHGKRFG*CVYLYS
Trigger: TGAATATAAATACACACATCAGCCAAACCGCTTTCC...GTGTGGAGTCTTAGAGCTTTGTAATTCCTGTTCTCTGGCTCCCTTTAAAGGCCA
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CCA 90 bp CCTTTAAAGGGAGCCAGAGAACAGGAATTACAAAGCTCTAAGACTCCACACTTCGATGTATCGGATCTCTaGCAAGCACATCATAAGATC +
Preference number: 4 (lower is better)
Translates to: PLKGAREQELQSSKTPHFDVSDL*QAHHKI
Trigger: GATCTTATGATGTGCTTGCCAGAGATCCGATACATC...GAAGTGTGGAGTCTTAGAGCTTTGTAATTCCTGTTCTCTGGCTCCCTTTAAAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp CAGAACCTTTCCCCCACTCTACAAATTAACAACTTGCTCTGTTTAATACTACATTGCAAATGCTCCTCTTaGAAAACCCCTTGCAGCCCT +
Preference number: 4 (lower is better)
Translates to: QNLSPTLQINNLLCLILHCKCSS*KTPCSP
Trigger: AGGGCTGCAAGGGGTTTTTCAAGAGGAGCATTTGCA...ATGTAGTATTAAACAGAGCAAGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTG
42% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp AATGGGAGAACTTACAACAAAAATTTGCAGCAAAGTTTCTGGTCCTTTCTACTGGGCACGTGTAATCCTTaGTTGAGAGCTCGCAGAAGA +
Preference number: 4 (lower is better)
Translates to: NGRTYNKNLQQSFWSFLLGTCNP*LRARRR
Trigger: TCTTCTGCGAGCTCTCAATCAAGGATTACACGTGCC...CAGTAGAAAGGACCAGAAACTTTGCTGCAAATTTTTGTTGTAAGTTCTCCCATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR GCA 90 bp AATGGGAGAACTTACAACAAAAATTTGCAGCAAAGTTTCTGGTCCTTTCTACTGCGCTGTCACCATGGTTaGTCCAGTGATTGGCTTCTT +
Preference number: 4 (lower is better)
Translates to: NGRTYNKNLQQSFWSFLLRCHHG*SSDWLL
Trigger: AAGAAGCCAATCACTGGAGCAACCATGGTGACAGCG...CAGTAGAAAGGACCAGAAACTTTGCTGCAAATTTTTGTTGTAAGTTCTCCCATT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR GCA 90 bp ATTTGTACAATGGCAACTTGCAGAACCTTTCCCCCACTCTACAAATTAACAACTTTGATCCAGGCAATCTaGCTAAAGAGCAACTCGTCG +
Preference number: 4 (lower is better)
Translates to: ICTMATCRTFPPLYKLTTLIQAI*LKSNSS
Trigger: CGACGAGTTGCTCTTTAGGCAGATTGCCTGGATCAA...AGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTGCAAGTTGCCATTGTACAAAT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR GCA 90 bp AACTTGCAGAACCTTTCCCCCACTCTACAAATTAACAACTTGCTCTGTTTAATACTTGTCTTGCAGGAGTaGAGCACCACCTTAAAGAGG +
Preference number: 4 (lower is better)
Translates to: NLQNLSPTLQINNLLCLILVLQE*STTLKR
Trigger: CCTCTTTAAGGTGGTGCTGCACTCCTGCAAGACAAG...TATTAAACAGAGCAAGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTGCAAGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp AATGGGAGAACTTACAACAAAAATTTGCAGCAAAGTTTCTGGTCCTTTCTACTGGACATCCCCATGTACTaGTCCCTGAATGCCATGAAT +
Preference number: 4 (lower is better)
Translates to: NGRTYNKNLQQSFWSFLLDIPMY*SLNAMN
Trigger: ATTCATGGCATTCAGGGATCAGTACATGGGGATGTC...CAGTAGAAAGGACCAGAAACTTTGCTGCAAATTTTTGTTGTAAGTTCTCCCATT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp CACAAACGTGAAAAACATTCTATCTGGAACTTTTTCTCTCTCAAGTGGCTGGGGTATTCAGTGAAATCCTaGCAAATGTACCAATACCGC +
Preference number: 4 (lower is better)
Translates to: HKREKHSIWNFFSLKWLGYSVKS*QMYQYR
Trigger: GCGGTATTGGTACATTTGTCAGGATTTCACTGAATA...CCCCAGCCACTTGAGAGAGAAAAAGTTCCAGATAGAATGTTTTTCACGTTTGTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR GCA 90 bp AACTTGCAGAACCTTTCCCCCACTCTACAAATTAACAACTTGCTCTGTTTAATAGCCTGGATCAAGCTCTaGCAATTCATCCTGACAGAA +
Preference number: 4 (lower is better)
Translates to: NLQNLSPTLQINNLLCLIAWIKL*QFILTE
Trigger: TTCTGTCAGGATGAATTGGCAGAGCTTGATCCAGGC...TATTAAACAGAGCAAGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTGCAAGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
CDS-3UTR GCA 90 bp ACATATTGTCACTTTGCTGGTACCTGTATCATTTCACTAAAGAGAAAAACTGACAGCTCCCCAAAGATCTaGTTGCTGTACACTGTGAGG +
Preference number: 4 (lower is better)
Translates to: TYCHFAGTCIISLKRKTDSSPKI*LLYTVR
Trigger: CCTCACAGTGTACAGCAAGCAGATCTTTGGGGAGCT...GTCAGTTTTTCTCTTTAGTGAAATGATACAGGTACCAGCAAAGTGACAATATGT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CCA 90 bp CAGAACCTTTCCCCCACTCTACAAATTAACAACTTGCTCTGTTTAATACTACATCTCTCCATTAGTGCCTaGATCAAGCTCTGCCAATTC +
Preference number: 4 (lower is better)
Translates to: QNLSPTLQINNLLCLILHLSISA*IKLCQF
Trigger: GAATTGGCAGAGCTTGATCCAGGCACTAATGGAGAG...ATGTAGTATTAAACAGAGCAAGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTG
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
CDS-3UTR CCA 90 bp AACTTGCAGAACCTTTCCCCCACTCTACAAATTAACAACTTGCTCTGTTTAATACTCTCCATTAGTGCCTaGATCAAGCTCTGCCAATTC +
Preference number: 4 (lower is better)
Translates to: NLQNLSPTLQINNLLCLILSISA*IKLCQF
Trigger: GAATTGGCAGAGCTTGATCCAGGCACTAATGGAGAG...TATTAAACAGAGCAAGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTGCAAGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 2 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
CDS-3UTR CCA 90 bp AACTTGCAGAACCTTTCCCCCACTCTACAAATTAACAACTTGCTCTGTTTAATAGGTTGCTCCAGTGATTaGCTTCTTCCTCAAACTCCT +
Preference number: 4 (lower is better)
Translates to: NLQNLSPTLQINNLLCLIGCSSD*LLPQTP
Trigger: AGGAGTTTGAGGAAGAAGCCAATCACTGGAGCAACC...TATTAAACAGAGCAAGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTGCAAGTT
41% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp ACATATTGTCACTTTGCTGGTACCTGTATCATTTCACTAAAGAGAAAAACTGACATAATGTGGAGGCACTaGCATCCCCATGTACTGATC +
Preference number: 4 (lower is better)
Translates to: TYCHFAGTCIISLKRKTDIMWRH*HPHVLI
Trigger: GATCAGTACATGGGGATGTCAGTGCCTCCACATTAT...GTCAGTTTTTCTCTTTAGTGAAATGATACAGGTACCAGCAAAGTGACAATATGT
40% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CAA 72 bp CAGTTTTGGATTTTGGATTTGGTTCAGAGGATAAGGTaGGGTGAGAACAGCGACTTCCAAAGAAGTCTTTAT +
Preference number: 4 (lower is better)
Translates to: QFWILDLVQRIR*GENSDFQRSLY
Trigger: ATAAAGACTTCTTTGGAAGTCGCTGTTCTCACCCAACCTTATCCTCTGAACCAAATCCAAAATCCAAAACTG
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CAA 72 bp GTTTCTGGTCCTTTCTACTGTTTAAAAGTGGCAGTTTaGGATTTTGGATTTGGTTCAGAGGATAAGGTTGGG +
Preference number: 4 (lower is better)
Translates to: VSGPFYCLKVAV*DFGFGSEDKVG
Trigger: CCCAACCTTATCCTCTGAACCAAATCCAAAATCCAAAACTGCCACTTTTAAACAGTAGAAAGGACCAGAAAC
40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR GCA 90 bp ACATATTGTCACTTTGCTGGTACCTGTATCATTTCACTAAAGAGAAAAACTGACAATTGCTTTCATGCATaGGTACTCCTCGTTGCTGAC +
Preference number: 4 (lower is better)
Translates to: TYCHFAGTCIISLKRKTDNCFHA*VLLVAD
Trigger: GTCAGCAACGAGGAGTACGCATGCATGAAAGCAATT...GTCAGTTTTTCTCTTTAGTGAAATGATACAGGTACCAGCAAAGTGACAATATGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CCA 90 bp AACTTGCAGAACCTTTCCCCCACTCTACAAATTAACAACTTGCTCTGTTTAATAGATGTATCGGATCTCTaGCAAGCACATCATAAGATC +
Preference number: 4 (lower is better)
Translates to: NLQNLSPTLQINNLLCLIDVSDL*QAHHKI
Trigger: GATCTTATGATGTGCTTGCCAGAGATCCGATACATC...TATTAAACAGAGCAAGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTGCAAGTT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp ATTTGTACAATGGCAACTTGCAGAACCTTTCCCCCACTCTACAAATTAACAACTACTCCTGTCCAGACATaGTTCTTTCAATTTCTTCTT +
Preference number: 4 (lower is better)
Translates to: ICTMATCRTFPPLYKLTTTPVQT*FFQFLL
Trigger: AAGAAGAAATTGAAAGAATCATGTCTGGACAGGAGT...AGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTGCAAGTTGCCATTGTACAAAT
38% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp GTTGAAAAATTCTCACTCAAAGTGAGTATTTTTGGTGGTCTGGATCAGAGAGGAACTCCTGTCCAGACATaGTTCTTTCAATTTCTTCTT +
Preference number: 4 (lower is better)
Translates to: VEKFSLKVSIFGGLDQRGTPVQT*FFQFLL
Trigger: AAGAAGAAATTGAAAGAATCATGTCTGGACAGGAGT...TCCTCTCTGATCCAGACCACCAAAAATACTCACTTTGAGTGAGAATTTTTCAAC
38% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp ACATATTGTCACTTTGCTGGTACCTGTATCATTTCACTAAAGAGAAAAACTGACTATTCAGTGAAATCCTaGCAAATGTACCAATACCGC +
Preference number: 4 (lower is better)
Translates to: TYCHFAGTCIISLKRKTDYSVKS*QMYQYR
Trigger: GCGGTATTGGTACATTTGTCAGGATTTCACTGAATA...GTCAGTTTTTCTCTTTAGTGAAATGATACAGGTACCAGCAAAGTGACAATATGT
37% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR TCA 90 bp ACATATTGTCACTTTGCTGGTACCTGTATCATTTCACTAAAGAGAAAAACTGACTTCAATTTCTTCTTCTaGTATCTGGACTGGTCCAAT +
Preference number: 4 (lower is better)
Translates to: TYCHFAGTCIISLKRKTDFNFFF*YLDWSN
Trigger: ATTGGACCAGTCCAGATATCAGAAGAAGAAATTGAA...GTCAGTTTTTCTCTTTAGTGAAATGATACAGGTACCAGCAAAGTGACAATATGT
36% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
3UTR CAA 72 bp TTGCAGAACCTTTCCCCCACTCTACAAATTAACAACTaGCTCTGTTTAATACTACATTATTGGAAAGATATG +
Preference number: 4 (lower is better)
Translates to: LQNLSPTLQINN*LCLILHYWKDM
Trigger: CATATCTTTCCAATAATGTAGTATTAAACAGAGCAAGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTGCAA
35% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS TCA 90 bp TCTGGGACGGAAATAGTGCCTGGATCAAGCTCTGCCAATTCATCCTaGCAGAAACCGTTGCGCGGCGGCGGAGGGAGCGCGGCGGGCGGC +
Preference number: 5 (lower is better)
Translates to: SGTEIVPGSSSANSS*QKPLRGGGGSAAGG
Trigger: GCCGCCCGCCGCGCTCCCTCCGCCGCCGCGCAACGGTTTCTGTCAGGATGAATTGGCAGAGCTTGATCCAGGCACTATTTCCGTCCCAGA
64% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142130.2
CDS TCA 90 bp TCAGTCTCTCCATTAGTGCCTGGATCAAGCTCTGCCAATTCATCCTaGCAGAAACCGTTGCGCGGCGGCGGAGGGAGCGCGGCGGGCGGC +
Preference number: 5 (lower is better)
Translates to: SVSPLVPGSSSANSS*QKPLRGGGGSAAGG
Trigger: GCCGCCCGCCGCGCTCCCTCCGCCGCCGCGCAACGGTTTCTGTCAGGATGAATTGGCAGAGCTTGATCCAGGCACTAATGGAGAGACTGA
63% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
CDS-3UTR CAA 90 bp ATGGACGGCAGAGTGCGGGCGGGCATTCCCACAGACCAAGGTGGGGGAGTCACTTCAGAGGGTGAGTACTaGGCTGTGACATCAGCCAGC +
Preference number: 5 (lower is better)
Translates to: MDGRVRAGIPTDQGGGVTSEGEY*AVTSAS
Trigger: GCTGGCTGATGTCACAGCCAAGTACTCACCCTCTGA...AGTGACTCCCCCACCTTGGTCTGTGGGAATGCCCGCCCGCACTCTGCCGTCCAT
61% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS GCA 90 bp CCACAGACCTACTGGATGATAGTGTGGAGCCTGGTGAGGGCTGGTTaGTCTCTGAAGCCCTGTTCCCAGGGGAACTGTGGTCGCTGTCAC +
Preference number: 5 (lower is better)
Translates to: PQTYWMIVWSLVRAG*SLKPCSQGNCGRCH
Trigger: GTGACAGCGACCACAGTTCCCCTGGGAACAGGGCTTCAGAGAGCAACCAGCCCTCACCAGGCTCCACACTATCATCCAGTAGGTCTGTGG
59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000142113.8
ENSMUST00000142130.2
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp ATGGACGGCAGAGTGCGGGCGGGCATTCCCACAGACCAAGGTGGGGGAGTCACTGATGAGACAGGTTCGTaGTTCAGCTCGATCATCTGG +
Preference number: 5 (lower is better)
Translates to: MDGRVRAGIPTDQGGGVTDETGS*FSSIIW
Trigger: CCAGATGATCGAGCTGAACAACGAACCTGTCTCATC...AGTGACTCCCCCACCTTGGTCTGTGGGAATGCCCGCCCGCACTCTGCCGTCCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp ATGGACGGCAGAGTGCGGGCGGGCATTCCCACAGACCAAGGTGGGGGAGTCACTTTGCAAATGCTCCTCTaGAAAAACCCCTTGCAGCCC +
Preference number: 5 (lower is better)
Translates to: MDGRVRAGIPTDQGGGVTLQMLL*KNPLQP
Trigger: GGGCTGCAAGGGGTTTTTCAAGAGGAGCATTTGCAA...AGTGACTCCCCCACCTTGGTCTGTGGGAATGCCCGCCCGCACTCTGCCGTCCAT
59% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS CCA 90 bp AGTTCCACAGACCTACTGGATGATAGTGTGGAGCCTGGTGAGGGCTaGTTGCTCTCTGAAGCCCTGTTCCCAGGGGAACTGTGGTCGCTG +
Preference number: 5 (lower is better)
Translates to: SSTDLLDDSVEPGEG*LLSEALFPGELWSL
Trigger: CAGCGACCACAGTTCCCCTGGGAACAGGGCTTCAGAGAGCAACCAGCCCTCACCAGGCTCCACACTATCATCCAGTAGGTCTGTGGAACT
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000142113.8
ENSMUST00000142130.2
ENSMUST00000168098.8
CDS GCA 90 bp TTCAGCTCGATCATCTGGGACGGAAATAGTGCCTGGATCAAGCTCTaGCAATTCATCCTGACAGAAACCGTTGCGCGGCGGCGGAGGGAG +
Preference number: 5 (lower is better)
Translates to: FSSIIWDGNSAWIKL*QFILTETVARRRRE
Trigger: CTCCCTCCGCCGCCGCGCAACGGTTTCTGTCAGGATGAATTGGCAGAGCTTGATCCAGGCACTATTTCCGTCCCAGATGATCGAGCTGAA
57% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142130.2
CDS-3UTR CAA 90 bp CGGGCATTCCCACAGACCAAGGTGGGGGAGTCACTGAGTGCGCTTGCTTTCTTTTCCCCAAAGATCTGCTaGCTGTACACTGTGAGGGAG +
Preference number: 5 (lower is better)
Translates to: RAFPQTKVGESLSALAFFSPKIC*LYTVRE
Trigger: CTCCCTCACAGTGTACAGCAAGCAGATCTTTGGGGA...AAAGAAAGCAAGCGCACTCAGTGACTCCCCCACCTTGGTCTGTGGGAATGCCCG
56% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp GCCTCTTCTAGCGATGGCTTGTCCCTATTTGGGCAGGTGAAAAGGACTCCCCAGTCAGAGGGTGAGTACTaGGCTGTGACATCAGCCAGC +
Preference number: 5 (lower is better)
Translates to: ASSSDGLSLFGQVKRTPQSEGEY*AVTSAS
Trigger: GCTGGCTGATGTCACAGCCAAGTACTCACCCTCTGA...CTGGGGAGTCCTTTTCACCTGCCCAAATAGGGACAAGCCATCGCTAGAAGAGGC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp CGGGCATTCCCACAGACCAAGGTGGGGGAGTCACTGAGTGCGCTTGCTTTCTTTGATGAGACAGGTTCGTaGTTCAGCTCGATCATCTGG +
Preference number: 5 (lower is better)
Translates to: RAFPQTKVGESLSALAFFDETGS*FSSIIW
Trigger: CCAGATGATCGAGCTGAACAACGAACCTGTCTCATC...AAAGAAAGCAAGCGCACTCAGTGACTCCCCCACCTTGGTCTGTGGGAATGCCCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp CGGGCATTCCCACAGACCAAGGTGGGGGAGTCACTGAGTGCGCTTGCTTTCTTTTTGCAAATGCTCCTCTaGAAAAACCCCTTGCAGCCC +
Preference number: 5 (lower is better)
Translates to: RAFPQTKVGESLSALAFFLQMLL*KNPLQP
Trigger: GGGCTGCAAGGGGTTTTTCAAGAGGAGCATTTGCAA...AAAGAAAGCAAGCGCACTCAGTGACTCCCCCACCTTGGTCTGTGGGAATGCCCG
54% GC, longest homopolymer 5 nt, total homopolymer stretches 19 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp GGGAGCTACAGTATTCTTTTCCCACAGGACTCCTCAGAGAGGAATCGACCAGGAACTGGTCCAATGCTCTaGTTCCGGCCTCCAGGCATG +
Preference number: 5 (lower is better)
Translates to: GSYSILFPQDSSERNRPGTGPML*FRPPGM
Trigger: CATGCCTGGAGGCCGGAACAAGAGCATTGGACCAGT...TCCTGGTCGATTCCTCTCTGAGGAGTCCTGTGGGAAAAGAATACTGTAGCTCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS GCA 90 bp ATTGAGAGCTCGCAGAAGAAAGGCAGCTTCTTGATCCAGGCAATCTaGCTAAAGAGCAACTCGTCGGCCAGGCGGCAAAGCAGAGCAAAC +
Preference number: 5 (lower is better)
Translates to: IESSQKKGSFLIQAI*LKSNSSARRQSRAN
Trigger: GTTTGCTCTGCTTTGCCGCCTGGCCGACGAGTTGCTCTTTAGGCAGATTGCCTGGATCAAGAAGCTGCCTTTCTTCTGCGAGCTCTCAAT
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp AGTAGCACATTTTTCTTGGGTTTGGAGCAGGCCTTAGCCTTTCCCACAGCTTCCACTGGTCCAATGCTCTaGTTCCGGCCTCCAGGCATG +
Preference number: 5 (lower is better)
Translates to: SSTFFLGLEQALAFPTASTGPML*FRPPGM
Trigger: CATGCCTGGAGGCCGGAACAAGAGCATTGGACCAGT...GGAAGCTGTGGGAAAGGCTAAGGCCTGCTCCAAACCCAAGAAAAATGTGCTACT
53% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp GGGAGCTACAGTATTCTTTTCCCACAGGACTCCTCAGAGAGGAATCGACCAGGATCCCCAAAGATCTGCTaGCTGTACACTGTGAGGGAG +
Preference number: 5 (lower is better)
Translates to: GSYSILFPQDSSERNRPGSPKIC*LYTVRE
Trigger: CTCCCTCACAGTGTACAGCAAGCAGATCTTTGGGGA...TCCTGGTCGATTCCTCTCTGAGGAGTCCTGTGGGAAAAGAATACTGTAGCTCCC
52% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp CACAACAGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTTCAGAGGGTGAGTACTaGGCTGTGACATCAGCCAGC +
Preference number: 5 (lower is better)
Translates to: HNSPGFHSRQKHVNSTGASEGEY*AVTSAS
Trigger: GCTGGCTGATGTCACAGCCAAGTACTCACCCTCTGA...AGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACTGTTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp CACAACAGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTTTCACCGTACTTGTCTaGCAGGAGTGCAGCACCACC +
Preference number: 5 (lower is better)
Translates to: HNSPGFHSRQKHVNSTGAFTVLV*QECSTT
Trigger: GGTGGTGCTGCACTCCTGCAAGACAAGTACGGTGAA...AGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACTGTTGTG
52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS TCA 90 bp CTGTTCCCAGGGGAACTGTGGTCGCTGTCACCATGGTTGCTCCAGTaGTTGGCTTCTTCCTCAAACTCCTGTCCAGACATGATTCTTTCA +
Preference number: 5 (lower is better)
Translates to: LFPGELWSLSPWLLQ*LASSSNSCPDMILS
Trigger: TGAAAGAATCATGTCTGGACAGGAGTTTGAGGAAGAAGCCAATCACTGGAGCAACCATGGTGACAGCGACCACAGTTCCCCTGGGAACAG
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000142113.8
ENSMUST00000142130.2
ENSMUST00000168098.8
CDS TCA 90 bp ATCTTCAATCAACATAGGTGTGCCCAATGGCTCCAGGTCTTCGGCTaGCATCAGCTGATGAATCAGACTGTAGGACTGAGGGTCCAGGCT +
Preference number: 5 (lower is better)
Translates to: IFNQHRCAQWLQVFG*HQLMNQTVGLRVQA
Trigger: AGCCTGGACCCTCAGTCCTACAGTCTGATTCATCAGCTGATGTCAGCCGAAGACCTGGAGCCATTGGGCACACCTATGTTGATTGAAGAT
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000142113.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp CCTTTAAAGGGAGCCAGAGAACAGGAATTACAAAGCTCTAAGACTCCACACTTCCCTGGTGAGGGCTGGTaGCTCTCTGAAGCCCTGTTC +
Preference number: 5 (lower is better)
Translates to: PLKGAREQELQSSKTPHFPGEGW*LSEALF
Trigger: GAACAGGGCTTCAGAGAGCAACCAGCCCTCACCAGG...GAAGTGTGGAGTCTTAGAGCTTTGTAATTCCTGTTCTCTGGCTCCCTTTAAAGG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp AGTAGCACATTTTTCTTGGGTTTGGAGCAGGCCTTAGCCTTTCCCACAGCTTCCACTCCTTCACCGTACTaGTCTTGCAGGAGTGCAGCA +
Preference number: 5 (lower is better)
Translates to: SSTFFLGLEQALAFPTASTPSPY*SCRSAA
Trigger: TGCTGCACTCCTGCAAGACAAGTACGGTGAAGGAGT...GGAAGCTGTGGGAAAGGCTAAGGCCTGCTCCAAACCCAAGAAAAATGTGCTACT
51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp GCAAGGAGGTGGGCTCTCCTTCTCCACATGGCTTTGGGGGCTATATGTTTTTATCACCGATACACCCGTTaGTTGCAAATGCTCCTCTTG +
Preference number: 5 (lower is better)
Translates to: ARRWALLLHMALGAICFYHRYTR*LQMLLL
Trigger: CAAGAGGAGCATTTGCAACAAACGGGTGTATCGGTG...ATAAAAACATATAGCCCCCAAAGCCATGTGGAGAAGGAGAGCCCACCTCCTTGC
50% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp AGTAGCACATTTTTCTTGGGTTTGGAGCAGGCCTTAGCCTTTCCCACAGCTTCCGACATGACACAGTTCTaGTCACGACTGCACCGATAC +
Preference number: 5 (lower is better)
Translates to: SSTFFLGLEQALAFPTASDMTQF*SRLHRY
Trigger: GTATCGGTGCAGTCGTGACAAGAACTGTGTCATGTC...GGAAGCTGTGGGAAAGGCTAAGGCCTGCTCCAAACCCAAGAAAAATGTGCTACT
50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp GTCCGGACCCAGGTAGAGTGCTTTGAGAGGAGTTGTAGGGAATTTCATCGAACTGACATGACACAGTTCTaGTCACGACTGCACCGATAC +
Preference number: 5 (lower is better)
Translates to: VRTQVECFERSCREFHRTDMTQF*SRLHRY
Trigger: GTATCGGTGCAGTCGTGACAAGAACTGTGTCATGTC...AGTTCGATGAAATTCCCTACAACTCCTCTCAAAGCACTCTACCTGGGTCCGGAC
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp AGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTACAGTAACTCCTTCACCGTACTaGTCTTGCAGGAGTGCAGCA +
Preference number: 5 (lower is better)
Translates to: SPGFHSRQKHVNSTGATVTPSPY*SCRSAA
Trigger: TGCTGCACTCCTGCAAGACAAGTACGGTGAAGGAGT...TACTGTAGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp AGCTACAGTATTCTTTTCCCACAGGACTCCTCAGAGAGGAATCGACCAGGATGTTTGCAAATGCTCCTCTaGAAAAACCCCTTGCAGCCC +
Preference number: 5 (lower is better)
Translates to: SYSILFPQDSSERNRPGCLQMLL*KNPLQP
Trigger: GGGCTGCAAGGGGTTTTTCAAGAGGAGCATTTGCAA...ACATCCTGGTCGATTCCTCTCTGAGGAGTCCTGTGGGAAAAGAATACTGTAGCT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp AGTCCAGGGTTTCATTCCCGACAGAAACATGTAAACAGCACGGGAGCTACAGTACACCGATACACCCGTTaGTTGCAAATGCTCCTCTTG +
Preference number: 5 (lower is better)
Translates to: SPGFHSRQKHVNSTGATVHRYTR*LQMLLL
Trigger: CAAGAGGAGCATTTGCAACAAACGGGTGTATCGGTG...TACTGTAGCTCCCGTGCTGTTTACATGTTTCTGTCGGGAATGAAACCCTGGACT
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp GATTTGTACAATGGCAACTTGCAGAACCTTTCCCCCACTCTACAAATTAACAACCCTGGTGAGGGCTGGTaGCTCTCTGAAGCCCTGTTC +
Preference number: 5 (lower is better)
Translates to: DLYNGNLQNLSPTLQINNPGEGW*LSEALF
Trigger: GAACAGGGCTTCAGAGAGCAACCAGCCCTCACCAGG...GTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTGCAAGTTGCCATTGTACAAATC
49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp GATTTGTACAATGGCAACTTGCAGAACCTTTCCCCCACTCTACAAATTAACAACACTGGTCCAATGCTCTaGTTCCGGCCTCCAGGCATG +
Preference number: 5 (lower is better)
Translates to: DLYNGNLQNLSPTLQINNTGPML*FRPPGM
Trigger: CATGCCTGGAGGCCGGAACAAGAGCATTGGACCAGT...GTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTGCAAGTTGCCATTGTACAAATC
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp AGTAGCACATTTTTCTTGGGTTTGGAGCAGGCCTTAGCCTTTCCCACAGCTTCCATGTACCAATACCGCTaGTTCAGTTGTTCCAGCTGT +
Preference number: 5 (lower is better)
Translates to: SSTFFLGLEQALAFPTASMYQYR*FSCSSC
Trigger: ACAGCTGGAACAACTGAACAAGCGGTATTGGTACAT...GGAAGCTGTGGGAAAGGCTAAGGCCTGCTCCAAACCCAAGAAAAATGTGCTACT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp GGGAGCTACAGTATTCTTTTCCCACAGGACTCCTCAGAGAGGAATCGACCAGGAGATCAGGAAAGCGGTTaGGCTGATGTGTGTATTTAT +
Preference number: 5 (lower is better)
Translates to: GSYSILFPQDSSERNRPGDQESG*ADVCIY
Trigger: ATAAATACACACATCAGCCAAACCGCTTTCCTGATC...TCCTGGTCGATTCCTCTCTGAGGAGTCCTGTGGGAAAAGAATACTGTAGCTCCC
48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp ACTAAGGGTGAGACTACCAAACCTTGCAAAGGACAAAAATGGCCTTTAAAGGGATTCACCGTACTTGTCTaGCAGGAGTGCAGCACCACC +
Preference number: 5 (lower is better)
Translates to: TKGETTKPCKGQKWPLKGFTVLV*QECSTT
Trigger: GGTGGTGCTGCACTCCTGCAAGACAAGTACGGTGAA...TCCCTTTAAAGGCCATTTTTGTCCTTTGCAAGGTTTGGTAGTCTCACCCTTAGT
48% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp AGCTACAGTATTCTTTTCCCACAGGACTCCTCAGAGAGGAATCGACCAGGATGTCGATACACCCGTTTGTaGCAAATGCTCCTCTTGAAA +
Preference number: 5 (lower is better)
Translates to: SYSILFPQDSSERNRPGCRYTRL*QMLLLK
Trigger: TTTCAAGAGGAGCATTTGCAACAAACGGGTGTATCG...ACATCCTGGTCGATTCCTCTCTGAGGAGTCCTGTGGGAAAAGAATACTGTAGCT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp CAGAACCTTTCCCCCACTCTACAAATTAACAACTTGCTCTGTTTAATACTACATCCTGGTGAGGGCTGGTaGCTCTCTGAAGCCCTGTTC +
Preference number: 5 (lower is better)
Translates to: QNLSPTLQINNLLCLILHPGEGW*LSEALF
Trigger: GAACAGGGCTTCAGAGAGCAACCAGCCCTCACCAGG...ATGTAGTATTAAACAGAGCAAGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp TCTGTAAACTGCAAGGAAATGCATCTGCTGCATTCACACAAAAGCATGTGCATCTCCCCAAAGATCTGCTaGCTGTACACTGTGAGGGAG +
Preference number: 5 (lower is better)
Translates to: SVNCKEMHLLHSHKSMCISPKIC*LYTVRE
Trigger: CTCCCTCACAGTGTACAGCAAGCAGATCTTTGGGGA...GATGCACATGCTTTTGTGTGAATGCAGCAGATGCATTTCCTTGCAGTTTACAGA
47% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp CAAGGAGGTGGGCTCTCCTTCTCCACATGGCTTTGGGGGCTATATGTTTTTATGCAGACCCCTGATATCTaGATTCAGGAAGTTAATTGC +
Preference number: 5 (lower is better)
Translates to: QGGGLSFSTWLWGLYVFMQTPDI*IQEVNC
Trigger: GCAATTAACTTCCTGAATCAAGATATCAGGGGTCTG...CATAAAAACATATAGCCCCCAAAGCCATGTGGAGAAGGAGAGCCCACCTCCTTG
47% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS TCA 90 bp GGTTGCTCCAGTGATTGGCTTCTTCCTCAAACTCCTGTCCAGACATaGTTCTTTCAATTTCTTCTTCTGATATCTGGACTGGTCCAATGC +
Preference number: 5 (lower is better)
Translates to: GCSSDWLLPQTPVQT*FFQFLLLISGLVQC
Trigger: GCATTGGACCAGTCCAGATATCAGAAGAAGAAATTGAAAGAATCATGTCTGGACAGGAGTTTGAGGAAGAAGCCAATCACTGGAGCAACC
44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000142113.8
ENSMUST00000142130.2
ENSMUST00000168098.8
CDS TCA 90 bp ATCCTGACAAATGTACCAATACCGCTTGTTCAGTTGTTCCAGCTGTaGGGCACTGGTCAGACCCCTGATATCTTGATTCAGGAAGTTAAT +
Preference number: 5 (lower is better)
Translates to: ILTNVPIPLVQLFQL*GTGQTPDILIQEVN
Trigger: ATTAACTTCCTGAATCAAGATATCAGGGGTCTGACCAGTGCCTCACAGCTGGAACAACTGAACAAGCGGTATTGGTACATTTGTCAGGAT
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp TGGCCTTTAAAGGGAGCCAGAGAACAGGAATTACAAAGCTCTAAGACTCCACACCAGACCCCTGATATCTaGATTCAGGAAGTTAATTGC +
Preference number: 5 (lower is better)
Translates to: WPLKGAREQELQSSKTPHQTPDI*IQEVNC
Trigger: GCAATTAACTTCCTGAATCAAGATATCAGGGGTCTG...GTGTGGAGTCTTAGAGCTTTGTAATTCCTGTTCTCTGGCTCCCTTTAAAGGCCA
44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp AATGGGAGAACTTACAACAAAAATTTGCAGCAAAGTTTCTGGTCCTTTCTACTGTTCACCGTACTTGTCTaGCAGGAGTGCAGCACCACC +
Preference number: 5 (lower is better)
Translates to: NGRTYNKNLQQSFWSFLLFTVLV*QECSTT
Trigger: GGTGGTGCTGCACTCCTGCAAGACAAGTACGGTGAA...CAGTAGAAAGGACCAGAAACTTTGCTGCAAATTTTTGTTGTAAGTTCTCCCATT
44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp GTTGAAAAATTCTCACTCAAAGTGAGTATTTTTGGTGGTCTGGATCAGAGAGGAACTCCTTCACCGTACTaGTCTTGCAGGAGTGCAGCA +
Preference number: 5 (lower is better)
Translates to: VEKFSLKVSIFGGLDQRGTPSPY*SCRSAA
Trigger: TGCTGCACTCCTGCAAGACAAGTACGGTGAAGGAGT...TCCTCTCTGATCCAGACCACCAAAAATACTCACTTTGAGTGAGAATTTTTCAAC
44% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp TCTGTAAACTGCAAGGAAATGCATCTGCTGCATTCACACAAAAGCATGTGCATCATGTACCAATACCGCTaGTTCAGTTGTTCCAGCTGT +
Preference number: 5 (lower is better)
Translates to: SVNCKEMHLLHSHKSMCIMYQYR*FSCSSC
Trigger: ACAGCTGGAACAACTGAACAAGCGGTATTGGTACAT...GATGCACATGCTTTTGTGTGAATGCAGCAGATGCATTTCCTTGCAGTTTACAGA
43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp CCTTTAAAGGGAGCCAGAGAACAGGAATTACAAAGCTCTAAGACTCCACACTTCGATCAGGAAAGCGGTTaGGCTGATGTGTGTATTTAT +
Preference number: 5 (lower is better)
Translates to: PLKGAREQELQSSKTPHFDQESG*ADVCIY
Trigger: ATAAATACACACATCAGCCAAACCGCTTTCCTGATC...GAAGTGTGGAGTCTTAGAGCTTTGTAATTCCTGTTCTCTGGCTCCCTTTAAAGG
43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp AACTTGCAGAACCTTTCCCCCACTCTACAAATTAACAACTTGCTCTGTTTAATACACCGATACACCCGTTaGTTGCAAATGCTCCTCTTG +
Preference number: 5 (lower is better)
Translates to: NLQNLSPTLQINNLLCLIHRYTR*LQMLLL
Trigger: CAAGAGGAGCATTTGCAACAAACGGGTGTATCGGTG...TATTAAACAGAGCAAGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTGCAAGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp AACTTGCAGAACCTTTCCCCCACTCTACAAATTAACAACTTGCTCTGTTTAATAGACATGACACAGTTCTaGTCACGACTGCACCGATAC +
Preference number: 5 (lower is better)
Translates to: NLQNLSPTLQINNLLCLIDMTQF*SRLHRY
Trigger: GTATCGGTGCAGTCGTGACAAGAACTGTGTCATGTC...TATTAAACAGAGCAAGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTGCAAGTT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp GATTTGTACAATGGCAACTTGCAGAACCTTTCCCCCACTCTACAAATTAACAACATGTACCAATACCGCTaGTTCAGTTGTTCCAGCTGT +
Preference number: 5 (lower is better)
Translates to: DLYNGNLQNLSPTLQINNMYQYR*FSCSSC
Trigger: ACAGCTGGAACAACTGAACAAGCGGTATTGGTACAT...GTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTGCAAGTTGCCATTGTACAAATC
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp ACTAAGGGTGAGACTACCAAACCTTGCAAAGGACAAAAATGGCCTTTAAAGGGAGATCAGGAAAGCGGTTaGGCTGATGTGTGTATTTAT +
Preference number: 5 (lower is better)
Translates to: TKGETTKPCKGQKWPLKGDQESG*ADVCIY
Trigger: ATAAATACACACATCAGCCAAACCGCTTTCCTGATC...TCCCTTTAAAGGCCATTTTTGTCCTTTGCAAGGTTTGGTAGTCTCACCCTTAGT
42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS CCA 90 bp GTATCGGATCTCTGGCAAGCACATCATAAGATCAGGAAAGCGGTTTaGCTGATGTGTGTATTTATATTCAGTGAAATCCTGACAAATGTA +
Preference number: 5 (lower is better)
Translates to: VSDLWQAHHKIRKAV*LMCVFIFSEILTNV
Trigger: TACATTTGTCAGGATTTCACTGAATATAAATACACACATCAGCCAAACCGCTTTCCTGATCTTATGATGTGCTTGCCAGAGATCCGATAC
40% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp CAGAACCTTTCCCCCACTCTACAAATTAACAACTTGCTCTGTTTAATACTACATCGATACACCCGTTTGTaGCAAATGCTCCTCTTGAAA +
Preference number: 5 (lower is better)
Translates to: QNLSPTLQINNLLCLILHRYTRL*QMLLLK
Trigger: TTTCAAGAGGAGCATTTGCAACAAACGGGTGTATCG...ATGTAGTATTAAACAGAGCAAGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTG
40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp ACATATTGTCACTTTGCTGGTACCTGTATCATTTCACTAAAGAGAAAAACTGACCGATACACCCGTTTGTaGCAAATGCTCCTCTTGAAA +
Preference number: 5 (lower is better)
Translates to: TYCHFAGTCIISLKRKTDRYTRL*QMLLLK
Trigger: TTTCAAGAGGAGCATTTGCAACAAACGGGTGTATCG...GTCAGTTTTTCTCTTTAGTGAAATGATACAGGTACCAGCAAAGTGACAATATGT
39% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS-3UTR CAA 90 bp CAGAACCTTTCCCCCACTCTACAAATTAACAACTTGCTCTGTTTAATACTACATCAGACCCCTGATATCTaGATTCAGGAAGTTAATTGC +
Preference number: 5 (lower is better)
Translates to: QNLSPTLQINNLLCLILHQTPDI*IQEVNC
Trigger: GCAATTAACTTCCTGAATCAAGATATCAGGGGTCTG...ATGTAGTATTAAACAGAGCAAGTTGTTAATTTGTAGAGTGGGGGAAAGGTTCTG
39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS GCA 72 bp CAGGAGTGCAGCACCACCTTAAAGAGGAGGGGCAGCTaGTCCAGGGGCACATTCACCATCTTGCCTGCGATG +
Preference number: 6 (lower is better)
Translates to: QECSTTLKRRGS*SRGTFTILPAM
Trigger: CATCGCAGGCAAGATGGTGAATGTGCCCCTGGAGCAGCTGCCCCTCCTCTTTAAGGTGGTGCTGCACTCCTG
60% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS CAA 90 bp TCCACAGACCTACTGGATGATAGTGTGGAGCCTGGTGAGGGCTGGTaGCTCTCTGAAGCCCTGTTCCCAGGGGAACTGTGGTCGCTGTCA +
Preference number: 6 (lower is better)
Translates to: STDLLDDSVEPGEGW*LSEALFPGELWSLS
Trigger: TGACAGCGACCACAGTTCCCCTGGGAACAGGGCTTCAGAGAGCAACCAGCCCTCACCAGGCTCCACACTATCATCCAGTAGGTCTGTGGA
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000142113.8
ENSMUST00000142130.2
ENSMUST00000168098.8
CDS CAA 72 bp GCCCGTAGCGCGGTCCCCACAGATGAGACAGGTTCGTaGTTCAGCTCGATCATCTGGGACGGAAACTTCCCA +
Preference number: 6 (lower is better)
Translates to: ARSAVPTDETGS*FSSIIWDGNFP
Trigger: TGGGAAGTTTCCGTCCCAGATGATCGAGCTGAACAACGAACCTGTCTCATCTGTGGGGACCGCGCTACGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142113.8
ENSMUST00000168098.8
CDS CAA 72 bp GCCCGTAGCGCGGTCCCCACAGATGAGACAGGTTCGTaGTTCAGCTCGATCATCTGGGACGGAAATAGTGCC +
Preference number: 6 (lower is better)
Translates to: ARSAVPTDETGS*FSSIIWDGNSA
Trigger: GGCACTATTTCCGTCCCAGATGATCGAGCTGAACAACGAACCTGTCTCATCTGTGGGGACCGCGCTACGGGC
58% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142130.2
CDS CAA 72 bp GCCCGTAGCGCGGTCCCCACAGATGAGACAGGTTCGTaGTTCAGCTCGATCATCTGGGACGGAAACAGGTAT +
Preference number: 6 (lower is better)
Translates to: ARSAVPTDETGS*FSSIIWDGNRY
Trigger: ATACCTGTTTCCGTCCCAGATGATCGAGCTGAACAACGAACCTGTCTCATCTGTGGGGACCGCGCTACGGGC
57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
CDS TCA 72 bp ATGCCCATCTGGAGACACTTGAGCAGGCGGCAGTACTaGCATCTGTTCCTCTGCTTCCGGGACATGACACAG +
Preference number: 6 (lower is better)
Translates to: MPIWRHLSRRQY*HLFLCFRDMTQ
Trigger: CTGTGTCATGTCCCGGAAGCAGAGGAACAGATGTCAGTACTGCCGCCTGCTCAAGTGTCTCCAGATGGGCAT
56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000142113.8
ENSMUST00000142130.2
ENSMUST00000168098.8
CDS GCA 72 bp GGGCAGCTGCTCCAGGGGCACATTCACCATCTTGCCTaGGATGTATCGGATCTCTGGCAAGCACATCATAAG +
Preference number: 6 (lower is better)
Translates to: GQLLQGHIHHLA*DVSDLWQAHHK
Trigger: CTTATGATGTGCTTGCCAGAGATCCGATACATCGCAGGCAAGATGGTGAATGTGCCCCTGGAGCAGCTGCCC
56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS CAA 90 bp ATAGTGCAAGCCCGTAGCGCGGTCCCCACAGATGAGACAGGTTCGTaGTTCAGCTCGATCATCTGGGACGGAAACAGGTATATGGCCTTG +
Preference number: 6 (lower is better)
Translates to: IVQARSAVPTDETGS*FSSIIWDGNRYMAL
Trigger: CAAGGCCATATACCTGTTTCCGTCCCAGATGATCGAGCTGAACAACGAACCTGTCTCATCTGTGGGGACCGCGCTACGGGCTTGCACTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
CDS CAA 90 bp ATAGTGCAAGCCCGTAGCGCGGTCCCCACAGATGAGACAGGTTCGTaGTTCAGCTCGATCATCTGGGACGGAAACTTCCCATGTCTCCAT +
Preference number: 6 (lower is better)
Translates to: IVQARSAVPTDETGS*FSSIIWDGNFPCLH
Trigger: ATGGAGACATGGGAAGTTTCCGTCCCAGATGATCGAGCTGAACAACGAACCTGTCTCATCTGTGGGGACCGCGCTACGGGCTTGCACTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 2 transcripts:
ENSMUST00000142113.8
ENSMUST00000168098.8
CDS CAA 90 bp ATAGTGCAAGCCCGTAGCGCGGTCCCCACAGATGAGACAGGTTCGTaGTTCAGCTCGATCATCTGGGACGGAAATAGTGCCTGGATCAAG +
Preference number: 6 (lower is better)
Translates to: IVQARSAVPTDETGS*FSSIIWDGNSAWIK
Trigger: CTTGATCCAGGCACTATTTCCGTCCCAGATGATCGAGCTGAACAACGAACCTGTCTCATCTGTGGGGACCGCGCTACGGGCTTGCACTAT
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 1 transcripts:
ENSMUST00000142130.2
CDS TCA 72 bp GGCAGTACTGACATCTGTTCCTCTGCTTCCGGGACATaGCACAGTTCTTGTCACGACTGCACCGATACACCC +
Preference number: 6 (lower is better)
Translates to: GSTDICSSASGT*HSSCHDCTDTP
Trigger: GGGTGTATCGGTGCAGTCGTGACAAGAACTGTGTCATGTCCCGGAAGCAGAGGAACAGATGTCAGTACTGCC
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000142113.8
ENSMUST00000142130.2
ENSMUST00000168098.8
CDS TCA 72 bp GGGGAACTGTGGTCGCTGTCACCATGGTTGCTCCAGTaGTTGGCTTCTTCCTCAAACTCCTGTCCAGACATG +
Preference number: 6 (lower is better)
Translates to: GELWSLSPWLLQ*LASSSNSCPDM
Trigger: CATGTCTGGACAGGAGTTTGAGGAAGAAGCCAATCACTGGAGCAACCATGGTGACAGCGACCACAGTTCCCC
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000142113.8
ENSMUST00000142130.2
ENSMUST00000168098.8
CDS GCA 72 bp ACTGTCAGTCTCTCCATTAGTGCCTGGATCAAGCTCTaGCAATTCATCCTGACAGAAACCGTTGCGCGGCGG +
Preference number: 6 (lower is better)
Translates to: TVSLSISAWIKL*QFILTETVARR
Trigger: CCGCCGCGCAACGGTTTCTGTCAGGATGAATTGGCAGAGCTTGATCCAGGCACTAATGGAGAGACTGACAGT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
CDS GCA 72 bp TGTTCCCAGGGGAACTGTGGTCGCTGTCACCATGGTTaGTCCAGTGATTGGCTTCTTCCTCAAACTCCTGTC +
Preference number: 6 (lower is better)
Translates to: CSQGNCGRCHHG*SSDWLLPQTPV
Trigger: GACAGGAGTTTGAGGAAGAAGCCAATCACTGGAGCAACCATGGTGACAGCGACCACAGTTCCCCTGGGAACA
54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 5 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000142113.8
ENSMUST00000142130.2
ENSMUST00000168098.8
CDS GCA 72 bp ATCATCTGGGACGGAAATAGTGCCTGGATCAAGCTCTaGCAATTCATCCTGACAGAAACCGTTGCGCGGCGG +
Preference number: 6 (lower is better)
Translates to: IIWDGNSAWIKL*QFILTETVARR
Trigger: CCGCCGCGCAACGGTTTCTGTCAGGATGAATTGGCAGAGCTTGATCCAGGCACTATTTCCGTCCCAGATGAT
54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142130.2
CDS TCA 72 bp CAACATAGGTGTGCCCAATGGCTCCAGGTCTTCGGCTaGCATCAGCTGATGAATCAGACTGTAGGACTGAGG +
Preference number: 6 (lower is better)
Translates to: QHRCAQWLQVFG*HQLMNQTVGLR
Trigger: CCTCAGTCCTACAGTCTGATTCATCAGCTGATGTCAGCCGAAGACCTGGAGCCATTGGGCACACCTATGTTG
53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 4 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000142113.8
ENSMUST00000168098.8
CDS TCA 72 bp TGTGGAGTTCTTCATCAGAGGGTGAGTACTTGGCTGTaGCATCAGCCAGCTCCCCAAAGATCTGCTTGCTGT +
Preference number: 6 (lower is better)
Translates to: CGVLHQRVSTWL*HQPAPQRSACC
Trigger: ACAGCAAGCAGATCTTTGGGGAGCTGGCTGATGTCACAGCCAAGTACTCACCCTCTGATGAAGAACTCCACA
51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS CAA 72 bp CATCTGTTCCTCTGCTTCCGGGACATGACACAGTTCTaGTCACGACTGCACCGATACACCCGTTTGTTGCAA +
Preference number: 6 (lower is better)
Translates to: HLFLCFRDMTQF*SRLHRYTRLLQ
Trigger: TTGCAACAAACGGGTGTATCGGTGCAGTCGTGACAAGAACTGTGTCATGTCCCGGAAGCAGAGGAACAGATG
51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000142113.8
ENSMUST00000142130.2
ENSMUST00000168098.8
CDS CCA 72 bp ACAGATGAGACAGGTTCGTTGTTCAGCTCGATCATCTaGGACGGAAATAGTGCCTGGATCAAGCTCTGCCAA +
Preference number: 6 (lower is better)
Translates to: TDETGSLFSSII*DGNSAWIKLCQ
Trigger: TTGGCAGAGCTTGATCCAGGCACTATTTCCGTCCCAGATGATCGAGCTGAACAACGAACCTGTCTCATCTGT
50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 1 transcripts:
ENSMUST00000142130.2
CDS CCA 72 bp GCTCGATCATCTGGGACGGAAACAGGTATATGGCCTTaGCCAAGTGTTAAACTGTCAGTCTCTCCATTAGTG +
Preference number: 6 (lower is better)
Translates to: ARSSGTETGIWP*PSVKLSVSPLV
Trigger: CACTAATGGAGAGACTGACAGTTTAACACTTGGCCAAGGCCATATACCTGTTTCCGTCCCAGATGATCGAGC
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 2 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
CDS CCA 72 bp CACATTCACCATCTTGCCTGCGATGTATCGGATCTCTaGCAAGCACATCATAAGATCAGGAAAGCGGTTTGG +
Preference number: 6 (lower is better)
Translates to: HIHHLACDVSDL*QAHHKIRKAVW
Trigger: CCAAACCGCTTTCCTGATCTTATGATGTGCTTGCCAGAGATCCGATACATCGCAGGCAAGATGGTGAATGTG
49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS CAA 72 bp ACACAGTTCTTGTCACGACTGCACCGATACACCCGTTaGTTGCAAATGCTCCTCTTGAAAAACCCCTTGCAG +
Preference number: 6 (lower is better)
Translates to: TQFLSRLHRYTR*LQMLLLKNPLQ
Trigger: CTGCAAGGGGTTTTTCAAGAGGAGCATTTGCAACAAACGGGTGTATCGGTGCAGTCGTGACAAGAACTGTGT
49% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt.
Matches the following 5 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000142113.8
ENSMUST00000142130.2
ENSMUST00000168098.8
CDS CAA 90 bp ATTCTTTCAATTTCTTCTTCTGATATCTGGACTGGTCCAATGCTCTaGTTCCGGCCTCCAGGCATGCCATCTTCTCTGATAGCCTTCCTG +
Preference number: 6 (lower is better)
Translates to: ILSISSSDIWTGPML*FRPPGMPSSLIAFL
Trigger: CAGGAAGGCTATCAGAGAAGATGGCATGCCTGGAGGCCGGAACAAGAGCATTGGACCAGTCCAGATATCAGAAGAAGAAATTGAAAGAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000142113.8
ENSMUST00000142130.2
ENSMUST00000168098.8
CDS TCA 72 bp AATGTACCAATACCGCTTGTTCAGTTGTTCCAGCTGTaGGGCACTGGTCAGACCCCTGATATCTTGATTCAG +
Preference number: 6 (lower is better)
Translates to: NVPIPLVQLFQL*GTGQTPDILIQ
Trigger: CTGAATCAAGATATCAGGGGTCTGACCAGTGCCTCACAGCTGGAACAACTGAACAAGCGGTATTGGTACATT
47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8
CDS GCA 72 bp TTTCAATTTCTTCTTCTGATATCTGGACTGGTCCAATaGTCTTGTTCCGGCCTCCAGGCATGCCATCTTCTC +
Preference number: 6 (lower is better)
Translates to: FQFLLLISGLVQ*SCSGLQACHLL
Trigger: GAGAAGATGGCATGCCTGGAGGCCGGAACAAGAGCATTGGACCAGTCCAGATATCAGAAGAAGAAATTGAAA
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000142113.8
ENSMUST00000142130.2
ENSMUST00000168098.8
CDS CAA 72 bp ATTTCTTCTTCTGATATCTGGACTGGTCCAATGCTCTaGTTCCGGCCTCCAGGCATGCCATCTTCTCTGATA +
Preference number: 6 (lower is better)
Translates to: ISSSDIWTGPML*FRPPGMPSSLI
Trigger: TATCAGAGAAGATGGCATGCCTGGAGGCCGGAACAAGAGCATTGGACCAGTCCAGATATCAGAAGAAGAAAT
47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt.
Matches the following 5 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000142113.8
ENSMUST00000142130.2
ENSMUST00000168098.8
CDS GCA 72 bp GGTCAGACCCCTGATATCTTGATTCAGGAAGTTAATTaGTTTCATGCATGCGTACTCCTCGTTGCTGACCTT +
Preference number: 6 (lower is better)
Translates to: GQTPDILIQEVN*FHACVLLVADL
Trigger: AAGGTCAGCAACGAGGAGTACGCATGCATGAAAGCAATTAACTTCCTGAATCAAGATATCAGGGGTCTGACC
46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt.
Matches the following 3 transcripts:
ENSMUST00000076275.11
ENSMUST00000112877.8
ENSMUST00000168098.8