Pregenerated sensors for NR2F2 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000030551Ensembl transcript IDs: ENSMUST00000032768.15, ENSMUST00000089565.6, ENSMUST00000208081.2
Found 79 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR CCA 90 bp | TACACTAGTCTACCTTTGAACAAACTGATTGAGGGAGTAAACAAATaGGGCCCCCGCTGGCTCAGCGAGAACTCACAGGGGCTCAGCTCC | + |
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Preference number: 1 (lower is better) Translates to: YTSLPLNKLIEGVNK*GPRWLSENSQGLSS Trigger: GGAGCTGAGCCCCTGTGAGTTCTCGCTGAGCCAGCGGGGGCCCCATTTGTTTACTCCCTCAATCAGTTTGTTCAAAGGTAGACTAGTGTA 53% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR GCA 90 bp | TTTCAGGTCTGCATGTATGAACCAGAACTGAGCATCAAAGTTGAATaGACTTGGCAAACTGATCTCCTTTCTTTCACCTCTGTCACCAGC | + |
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Preference number: 1 (lower is better) Translates to: FQVCMYEPELSIKVE*TWQTDLLSFTSVTS Trigger: GCTGGTGACAGAGGTGAAAGAAAGGAGATCAGTTTGCCAAGTGCATTCAACTTTGATGCTCAGTTCTGGTTCATACATGCAGACCTGAAA 44% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR CCA 90 bp | TCAGCGAGAACTCACAGGGGCTCAGCTCCGTGGAAAGACAGTGAGTaGGGACAGCCAAGCAGATTTCAGATATCAAATAATATTTTAATT | + |
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Preference number: 1 (lower is better) Translates to: SARTHRGSAPWKDSE*GQPSRFQISNNILI Trigger: AATTAAAATATTATTTGATATCTGAAATCTGCTTGGCTGTCCCCACTCACTGTCTTTCCACGGAGCTGAGCCCCTGTGAGTTCTCGCTGA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR TCA 90 bp | CCTAAATCAGGCAGAGTTTTCAGGTCTGCATGTATGAACCAGAACTaGGCATCAAAGTTGAATGCACTTGGCAAACTGATCTCCTTTCTT | + |
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Preference number: 1 (lower is better) Translates to: PKSGRVFRSACMNQN*ASKLNALGKLISFL Trigger: AAGAAAGGAGATCAGTTTGCCAAGTGCATTCAACTTTGATGCTCAGTTCTGGTTCATACATGCAGACCTGAAAACTCTGCCTGATTTAGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR TCA 90 bp | AAGGAAAAACTCATTGCAAACAACTGCCCTCTATTTACAGTTCTGTaGTTAGCTTGCTTGGACAGTCCTCTGCATAACTGTCACAAATGT | + |
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Preference number: 1 (lower is better) Translates to: KEKLIANNCPLFTVL*LACLDSPLHNCHKC Trigger: ACATTTGTGACAGTTATGCAGAGGACTGTCCAAGCAAGCTAATCACAGAACTGTAAATAGAGGGCAGTTGTTTGCAATGAGTTTTTCCTT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR-3UTR CCA 90 bp | TGTGTTTTACTTAGTAGAGAAACTTCACACACTCACATGGGTAGCACTTGCAAGAGGGGCTCAGCTCCGTaGAAAGACAGTGAGTGGGGA | + |
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Preference number: 2 (lower is better) Translates to: CVLLSRETSHTHMGSTCKRGSAP*KDSEWG Trigger: TCCCCACTCACTGTCTTTCCACGGAGCTGAGCCCCT...CTTGCAAGTGCTACCCATGTGAGTGTGTGAAGTTTCTCTACTAAGTAAAACACA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR-3UTR CCA 90 bp | GGAAAAACTCATTGCAAACAACTGCCCTCTATTTACAGTTCTGTGATTAGCTTGAAATGGGGCCCCCGCTaGCTCAGCGAGAACTCACAG | + |
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Preference number: 2 (lower is better) Translates to: GKTHCKQLPSIYSSVISLKWGPR*LSENSQ Trigger: CTGTGAGTTCTCGCTGAGCCAGCGGGGGCCCCATTT...CAAGCTAATCACAGAACTGTAAATAGAGGGCAGTTGTTTGCAATGAGTTTTTCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR-3UTR TCA 90 bp | TGTGTTTTACTTAGTAGAGAAACTTCACACACTCACATGGGTAGCACTTGCAAGGCAAGTTCCCAGCAGTaGGCTCTTCCCAAACCAGGA | + |
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Preference number: 2 (lower is better) Translates to: CVLLSRETSHTHMGSTCKASSQQ*ALPKPG Trigger: TCCTGGTTTGGGAAGAGCTCACTGCTGGGAACTTGC...CTTGCAAGTGCTACCCATGTGAGTGTGTGAAGTTTCTCTACTAAGTAAAACACA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR-3UTR CCA 90 bp | TGTGTTTTACTTAGTAGAGAAACTTCACACACTCACATGGGTAGCACTTGCAAGAAGCTAGGTTTGTCATaGTATGGGGTGGGGGTGGGG | + |
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Preference number: 2 (lower is better) Translates to: CVLLSRETSHTHMGSTCKKLGLS*YGVGVG Trigger: CCCCACCCCCACCCCATACCATGACAAACCTAGCTT...CTTGCAAGTGCTACCCATGTGAGTGTGTGAAGTTTCTCTACTAAGTAAAACACA 47% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR-3UTR TCA 90 bp | ATACTTTTCACAATACCTTCCCTAAGCAGGCACTTAAGTGTGACAAATATAAGGTCCGTGGAAAGACAGTaGGTGGGGACAGCCAAGCAG | + |
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Preference number: 2 (lower is better) Translates to: ILFTIPSLSRHLSVTNIRSVERQ*VGTAKQ Trigger: CTGCTTGGCTGTCCCCACTCACTGTCTTTCCACGGA...CCTTATATTTGTCACACTTAAGTGCCTGCTTAGGGAAGGTATTGTGAAAAGTAT 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR-3UTR GCA 90 bp | CCCGTTTTAAGATTAAACCACAACATGGTAAAAGTATTGTCAGGGAGGGCAGCTCTTGACCTGTGGCCATaGTCTCAACAGACTGAAGAG | + |
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Preference number: 2 (lower is better) Translates to: PVLRLNHNMVKVLSGRAALDLWP*SQQTEE Trigger: CTCTTCAGTCTGTTGAGAGCATGGCCACAGGTCAAG...AGCTGCCCTCCCTGACAATACTTTTACCATGTTGTGGTTTAATCTTAAAACGGG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR-3UTR CCA 90 bp | CCAAAAATGGTTTCTAAGACCAAAGGATCCCAGAGCAGTACAGATTGTTTCTATCCTCAGCTTGTGTCTTaGACACATTCCTTGGCTGCC | + |
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Preference number: 2 (lower is better) Translates to: PKMVSKTKGSQSSTDCFYPQLVS*THSLAA Trigger: GGCAGCCAAGGAATGTGTCCAAGACACAAGCTGAGG...ATAGAAACAATCTGTACTGCTCTGGGATCCTTTGGTCTTAGAAACCATTTTTGG 44% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR-3UTR GCA 90 bp | TGTGTTTTACTTAGTAGAGAAACTTCACACACTCACATGGGTAGCACTTGCAAGGCCACCACTTGTAAGTaGATTTCCACCATCTCTGAG | + |
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Preference number: 2 (lower is better) Translates to: CVLLSRETSHTHMGSTCKATTCK*ISTISE Trigger: CTCAGAGATGGTGGAAATGCACTTACAAGTGGTGGC...CTTGCAAGTGCTACCCATGTGAGTGTGTGAAGTTTCTCTACTAAGTAAAACACA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR-3UTR TCA 90 bp | CCCGTTTTAAGATTAAACCACAACATGGTAAAAGTATTGTCAGGGAGGGCAGCTAAAAGTAGGATTAGGTaGATGGGGGTGGCTTACTAT | + |
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Preference number: 2 (lower is better) Translates to: PVLRLNHNMVKVLSGRAAKSRIR*MGVAYY Trigger: ATAGTAAGCCACCCCCATTCACCTAATCCTACTTTT...AGCTGCCCTCCCTGACAATACTTTTACCATGTTGTGGTTTAATCTTAAAACGGG 42% GC, longest homopolymer 5 nt, total homopolymer stretches 17 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR-3UTR TCA 90 bp | AGGAAAAGGGCCTGTGTTTTACTTAGTAGAGAAACTTCACACACTCACATGGGTACAGAACCAAATAGTTaGCTTCCCAAATCAGCACAC | + |
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Preference number: 2 (lower is better) Translates to: RKRACVLLSRETSHTHMGTEPNS*LPKSAH Trigger: GTGTGCTGATTTGGGAAGTCAACTATTTGGTTCTGT...ACCCATGTGAGTGTGTGAAGTTTCTCTACTAAGTAAAACACAGGCCCTTTTCCT 42% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR-3UTR CCA 90 bp | CCCGTTTTAAGATTAAACCACAACATGGTAAAAGTATTGTCAGGGAGGGCAGCTGTAGGATTAGGTGAATaGGGGTGGCTTACTATATCA | + |
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Preference number: 2 (lower is better) Translates to: PVLRLNHNMVKVLSGRAAVGLGE*GWLTIS Trigger: TGATATAGTAAGCCACCCCCATTCACCTAATCCTAC...AGCTGCCCTCCCTGACAATACTTTTACCATGTTGTGGTTTAATCTTAAAACGGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR-3UTR TCA 90 bp | CCTGTGTTTTACTTAGTAGAGAAACTTCACACACTCACATGGGTAGCACTTGCAAACAGCCACGCTAAATaGGAACCTCAGGATATTTTT | + |
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Preference number: 2 (lower is better) Translates to: PVFYLVEKLHTLTWVALANSHAK*EPQDIF Trigger: AAAAATATCCTGAGGTTCTCATTTAGCGTGGCTGTT...TGCAAGTGCTACCCATGTGAGTGTGTGAAGTTTCTCTACTAAGTAAAACACAGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR-3UTR GCA 90 bp | GGCAAATACACTAGTCTACCTTTGAACAAACTGATTGAGGGAGTAAACAAATGGAGTAGCAGGTTGTTCTaGCCAACACAGGAGTTGTTT | + |
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Preference number: 2 (lower is better) Translates to: GKYTSLPLNKLIEGVNKWSSRLF*PTQELF Trigger: AAACAACTCCTGTGTTGGGCAGAACAACCTGCTACT...CCATTTGTTTACTCCCTCAATCAGTTTGTTCAAAGGTAGACTAGTGTATTTGCC 41% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR-3UTR CCA 90 bp | ATACTTTTCACAATACCTTCCCTAAGCAGGCACTTAAGTGTGACAAATATAAGGTGGAAAGACAGTGAGTaGGGACAGCCAAGCAGATTT | + |
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Preference number: 2 (lower is better) Translates to: ILFTIPSLSRHLSVTNIRWKDSE*GQPSRF Trigger: AAATCTGCTTGGCTGTCCCCACTCACTGTCTTTCCA...CCTTATATTTGTCACACTTAAGTGCCTGCTTAGGGAAGGTATTGTGAAAAGTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR-3UTR CCA 90 bp | CCAAAAATGGTTTCTAAGACCAAAGGATCCCAGAGCAGTACAGATTGTTTCTATTTAGGTGAATGGGGGTaGCTTACTATATCAGTGTGG | + |
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Preference number: 2 (lower is better) Translates to: PKMVSKTKGSQSSTDCFYLGEWG*LTISVW Trigger: CCACACTGATATAGTAAGCCACCCCCATTCACCTAA...ATAGAAACAATCTGTACTGCTCTGGGATCCTTTGGTCTTAGAAACCATTTTTGG 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR-3UTR TCA 90 bp | TGTGTTTTACTTAGTAGAGAAACTTCACACACTCACATGGGTAGCACTTGCAAGTTTGAACAAACTGATTaGGGGAGTAAACAAATGGGG | + |
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Preference number: 2 (lower is better) Translates to: CVLLSRETSHTHMGSTCKFEQTD*GSKQMG Trigger: CCCCATTTGTTTACTCCCTCAATCAGTTTGTTCAAA...CTTGCAAGTGCTACCCATGTGAGTGTGTGAAGTTTCTCTACTAAGTAAAACACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR-3UTR TCA 90 bp | TGTGTTTTACTTAGTAGAGAAACTTCACACACTCACATGGGTAGCACTTGCAAGTGTATGAACCAGAACTaGGCATCAAAGTTGAATGCA | + |
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Preference number: 2 (lower is better) Translates to: CVLLSRETSHTHMGSTCKCMNQN*ASKLNA Trigger: TGCATTCAACTTTGATGCTCAGTTCTGGTTCATACA...CTTGCAAGTGCTACCCATGTGAGTGTGTGAAGTTTCTCTACTAAGTAAAACACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR-3UTR GCA 90 bp | CCCGTTTTAAGATTAAACCACAACATGGTAAAAGTATTGTCAGGGAGGGCAGCTCACGTTACCTATAAGTaGCAACAGTGTTATTTTGTC | + |
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Preference number: 2 (lower is better) Translates to: PVLRLNHNMVKVLSGRAAHVTYK*QQCYFV Trigger: GACAAAATAACACTGTTGGCACTTATAGGTAACGTG...AGCTGCCCTCCCTGACAATACTTTTACCATGTTGTGGTTTAATCTTAAAACGGG 40% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR-3UTR GCA 90 bp | TGTGTTTTACTTAGTAGAGAAACTTCACACACTCACATGGGTAGCACTTGCAAGGAAAGGCAGGGCAACTaGAAGTTATCATGTATATAC | + |
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Preference number: 2 (lower is better) Translates to: CVLLSRETSHTHMGSTCKERQGN*KLSCIY Trigger: GTATATACATGATAACTTGCAGTTGCCCTGCCTTTC...CTTGCAAGTGCTACCCATGTGAGTGTGTGAAGTTTCTCTACTAAGTAAAACACA 40% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR-3UTR CCA 90 bp | GGAAAAACTCATTGCAAACAACTGCCCTCTATTTACAGTTCTGTGATTAGCTTGCTTGGACACATTCCTTaGCTGCCAATAAATTCCACA | + |
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Preference number: 2 (lower is better) Translates to: GKTHCKQLPSIYSSVISLLGHIP*LPINST Trigger: TGTGGAATTTATTGGCAGCCAAGGAATGTGTCCAAG...CAAGCTAATCACAGAACTGTAAATAGAGGGCAGTTGTTTGCAATGAGTTTTTCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR-3UTR CCA 90 bp | AGGAAAAGGGCCTGTGTTTTACTTAGTAGAGAAACTTCACACACTCACATGGGTAACCACAGAATAAACTaGTTTGGAACCAGAAAAGTT | + |
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Preference number: 2 (lower is better) Translates to: RKRACVLLSRETSHTHMGNHRIN*FGTRKV Trigger: AACTTTTCTGGTTCCAAACCAGTTTATTCTGTGGTT...ACCCATGTGAGTGTGTGAAGTTTCTCTACTAAGTAAAACACAGGCCCTTTTCCT 39% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR CCA 72 bp | GCTGGCTCAGCGAGAACTCACAGGGGCTCAGCTCCGTaGAAAGACAGTGAGTGGGGACAGCCAAGCAGATTT | + |
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Preference number: 3 (lower is better) Translates to: AGSARTHRGSAP*KDSEWGQPSRF Trigger: AAATCTGCTTGGCTGTCCCCACTCACTGTCTTTCCACGGAGCTGAGCCCCTGTGAGTTCTCGCTGAGCCAGC 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR CCA 72 bp | CTACCTTTGAACAAACTGATTGAGGGAGTAAACAAATaGGGCCCCCGCTGGCTCAGCGAGAACTCACAGGGG | + |
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Preference number: 3 (lower is better) Translates to: LPLNKLIEGVNK*GPRWLSENSQG Trigger: CCCCTGTGAGTTCTCGCTGAGCCAGCGGGGGCCCCATTTGTTTACTCCCTCAATCAGTTTGTTCAAAGGTAG 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR-3UTR CAA 90 bp | AAACTGATTGAGGGAGTAAACAAATGGGGCCCCCGCTGGCTCAGCGAGAACTCAATGATAAGTAGCAGGTaGTTCTGCCCAACACAGGAG | + |
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Preference number: 3 (lower is better) Translates to: KLIEGVNKWGPRWLSENSMISSR*FCPTQE Trigger: CTCCTGTGTTGGGCAGAACAACCTGCTACTTATCAT...TGAGTTCTCGCTGAGCCAGCGGGGGCCCCATTTGTTTACTCCCTCAATCAGTTT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR TCA 72 bp | GAGAACTCACAGGGGCTCAGCTCCGTGGAAAGACAGTaGGTGGGGACAGCCAAGCAGATTTCAGATATCAAA | + |
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Preference number: 3 (lower is better) Translates to: ENSQGLSSVERQ*VGTAKQISDIK Trigger: TTTGATATCTGAAATCTGCTTGGCTGTCCCCACTCACTGTCTTTCCACGGAGCTGAGCCCCTGTGAGTTCTC 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR-3UTR CAA 90 bp | AAACTGATTGAGGGAGTAAACAAATGGGGCCCCCGCTGGCTCAGCGAGAACTCATTTAAAAAGCTAGGTTaGTCATGGTATGGGGTGGGG | + |
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Preference number: 3 (lower is better) Translates to: KLIEGVNKWGPRWLSENSFKKLG*SWYGVG Trigger: CCCCACCCCATACCATGACAAACCTAGCTTTTTAAA...TGAGTTCTCGCTGAGCCAGCGGGGGCCCCATTTGTTTACTCCCTCAATCAGTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 18 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR CCA 72 bp | GTACATAACTCCAATGGTAAAGATTCCCTTGACCTGTaGCCATGCTCTCAACAGACTGAAGAGGGAGGGGGA | + |
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Preference number: 3 (lower is better) Translates to: VHNSNGKDSLDL*PCSQQTEEGGG Trigger: TCCCCCTCCCTCTTCAGTCTGTTGAGAGCATGGCCACAGGTCAAGGGAATCTTTACCATTGGAGTTATGTAC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR CCA 72 bp | ACTCACAGGGGCTCAGCTCCGTGGAAAGACAGTGAGTaGGGACAGCCAAGCAGATTTCAGATATCAAATAAT | + |
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Preference number: 3 (lower is better) Translates to: THRGSAPWKDSE*GQPSRFQISNN Trigger: ATTATTTGATATCTGAAATCTGCTTGGCTGTCCCCACTCACTGTCTTTCCACGGAGCTGAGCCCCTGTGAGT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR-3UTR CAA 90 bp | TGTGTTTTACTTAGTAGAGAAACTTCACACACTCACATGGGTAGCACTTGCAAGATGGTAAAGATTCCCTaGACCTGTGGCCATGCTCTC | + |
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Preference number: 3 (lower is better) Translates to: CVLLSRETSHTHMGSTCKMVKIP*TCGHAL Trigger: GAGAGCATGGCCACAGGTCAAGGGAATCTTTACCAT...CTTGCAAGTGCTACCCATGTGAGTGTGTGAAGTTTCTCTACTAAGTAAAACACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR-3UTR CAA 90 bp | CCTGTGTTTTACTTAGTAGAGAAACTTCACACACTCACATGGGTAGCACTTGCATCTTGGACACATTCCTaGGCTGCCAATAAATTCCAC | + |
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Preference number: 3 (lower is better) Translates to: PVFYLVEKLHTLTWVALASWTHS*AANKFH Trigger: GTGGAATTTATTGGCAGCCAAGGAATGTGTCCAAGA...TGCAAGTGCTACCCATGTGAGTGTGTGAAGTTTCTCTACTAAGTAAAACACAGG 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR TCA 72 bp | CTCATTGCAAACAACTGCCCTCTATTTACAGTTCTGTaGTTAGCTTGCTTGGACAGTCCTCTGCATAACTGT | + |
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Preference number: 3 (lower is better) Translates to: LIANNCPLFTVL*LACLDSPLHNC Trigger: ACAGTTATGCAGAGGACTGTCCAAGCAAGCTAATCACAGAACTGTAAATAGAGGGCAGTTGTTTGCAATGAG 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR-3UTR CAA 90 bp | GGAAAAACTCATTGCAAACAACTGCCCTCTATTTACAGTTCTGTGATTAGCTTGTGTGATTCCCCCAGCTaGCTAATTAGAGTGCTCAAC | + |
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Preference number: 3 (lower is better) Translates to: GKTHCKQLPSIYSSVISLCDSPS*LIRVLN Trigger: GTTGAGCACTCTAATTAGCAAGCTGGGGGAATCACA...CAAGCTAATCACAGAACTGTAAATAGAGGGCAGTTGTTTGCAATGAGTTTTTCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR-3UTR CAA 90 bp | CCTGTGTTTTACTTAGTAGAGAAACTTCACACACTCACATGGGTAGCACTTGCATACACTAGTCTACCTTaGAACAAACTGATTGAGGGA | + |
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Preference number: 3 (lower is better) Translates to: PVFYLVEKLHTLTWVALAYTSLP*NKLIEG Trigger: TCCCTCAATCAGTTTGTTCAAAGGTAGACTAGTGTA...TGCAAGTGCTACCCATGTGAGTGTGTGAAGTTTCTCTACTAAGTAAAACACAGG 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR-3UTR CAA 90 bp | GGAAAAACTCATTGCAAACAACTGCCCTCTATTTACAGTTCTGTGATTAGCTTGTTCAAAAACCTCAGCTaGTGTCTTGGACACATTCCT | + |
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Preference number: 3 (lower is better) Translates to: GKTHCKQLPSIYSSVISLFKNLS*CLGHIP Trigger: AGGAATGTGTCCAAGACACAAGCTGAGGTTTTTGAA...CAAGCTAATCACAGAACTGTAAATAGAGGGCAGTTGTTTGCAATGAGTTTTTCC 40% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR TCA 72 bp | TCATTTGGCAGTCTCTCTCTTTCTCTCTCTCCTTTTTaGAATTCACAGTCCATTAAATTCTTCCCCTCTCTT | + |
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Preference number: 3 (lower is better) Translates to: SFGSLSLSLSPF*NSQSIKFFPSL Trigger: AAGAGAGGGGAAGAATTTAATGGACTGTGAATTTCAAAAAGGAGAGAGAGAAAGAGAGAGACTGCCAAATGA 39% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 2 transcripts: ENSMUST00000032768.15 ENSMUST00000089565.6 |
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| 3UTR-3UTR CAA 90 bp | GGAAAAACTCATTGCAAACAACTGCCCTCTATTTACAGTTCTGTGATTAGCTTGTCCACCATCTCTGAGTaGCCTTTTAAAGTTTTATGT | + |
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Preference number: 3 (lower is better) Translates to: GKTHCKQLPSIYSSVISLSTISE*PFKVLC Trigger: ACATAAAACTTTAAAAGGCAACTCAGAGATGGTGGA...CAAGCTAATCACAGAACTGTAAATAGAGGGCAGTTGTTTGCAATGAGTTTTTCC 38% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| CDS-3UTR CCA 90 bp | AAACTGATTGAGGGAGTAAACAAATGGGGCCCCCGCTGGCTCAGCGAGAACTCACCGGGCACCTCGTCCTaGGGGTCGCGCCACGTGCTG | + |
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Preference number: 4 (lower is better) Translates to: KLIEGVNKWGPRWLSENSPGTSS*GSRHVL Trigger: CAGCACGTGGCGCGACCCCCAGGACGAGGTGCCCGG...TGAGTTCTCGCTGAGCCAGCGGGGGCCCCATTTGTTTACTCCCTCAATCAGTTT 62% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| CDS-3UTR GCA 90 bp | AAACTGATTGAGGGAGTAAACAAATGGGGCCCCCGCTGGCTCAGCGAGAACTCATGCTGCTGCTGCTGCTaGTTGTCGCTGCCCGGGCCG | + |
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Preference number: 4 (lower is better) Translates to: KLIEGVNKWGPRWLSENSCCCCC*LSLPGP Trigger: CGGCCCGGGCAGCGACAAGCAGCAGCAGCAGCAGCA...TGAGTTCTCGCTGAGCCAGCGGGGGCCCCATTTGTTTACTCCCTCAATCAGTTT 60% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| CDS-3UTR CCA 90 bp | CAAAAACCTCAGCTTGTGTCTTGGACACATTCCTTGGCTGCCAATAAATTCCACTTGGCCCGGCGTCTGTaGCGTGTGCGGGGCGCCAGG | + |
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Preference number: 4 (lower is better) Translates to: QKPQLVSWTHSLAANKFHLARRL*RVRGAR Trigger: CCTGGCGCCCCGCACACGCCACAGACGCCGGGCCAA...GTGGAATTTATTGGCAGCCAAGGAATGTGTCCAAGACACAAGCTGAGGTTTTTG 57% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| CDS-3UTR TCA 90 bp | AAACTGATTGAGGGAGTAAACAAATGGGGCCCCCGCTGGCTCAGCGAGAACTCAACAGGACTATGGCCTTaGGGCAGCTATACTCGGCGG | + |
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Preference number: 4 (lower is better) Translates to: KLIEGVNKWGPRWLSENSTGLWP*GSYTRR Trigger: CCGCCGAGTATAGCTGCCTCAAGGCCATAGTCCTGT...TGAGTTCTCGCTGAGCCAGCGGGGGCCCCATTTGTTTACTCCCTCAATCAGTTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| CDS-3UTR GCA 90 bp | AAACTGATTGAGGGAGTAAACAAATGGGGCCCCCGCTGGCTCAGCGAGAACTCACACTCGATGTGCTGCTaGTGCTGCTGCTTGTCGCTG | + |
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Preference number: 4 (lower is better) Translates to: KLIEGVNKWGPRWLSENSHSMCC*CCCLSL Trigger: CAGCGACAAGCAGCAGCAGCAGCAGCACATCGAGTG...TGAGTTCTCGCTGAGCCAGCGGGGGCCCCATTTGTTTACTCCCTCAATCAGTTT 56% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| CDS-3UTR TCA 90 bp | AAACTGATTGAGGGAGTAAACAAATGGGGCCCCCGCTGGCTCAGCGAGAACTCACGACGTGCAGTGCCTTaGGCTTCTCCACTTGCTCTT | + |
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Preference number: 4 (lower is better) Translates to: KLIEGVNKWGPRWLSENSRRAVP*ASPLAL Trigger: AAGAGCAAGTGGAGAAGCTCAAGGCACTGCACGTCG...TGAGTTCTCGCTGAGCCAGCGGGGGCCCCATTTGTTTACTCCCTCAATCAGTTT 54% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| CDS-3UTR TCA 90 bp | CCTGTGTTTTACTTAGTAGAGAAACTTCACACACTCACATGGGTAGCACTTGCAGGGCCACCTGGTCCGTaGTCTGCAGGTCAGGGAAGA | + |
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Preference number: 4 (lower is better) Translates to: PVFYLVEKLHTLTWVALAGPPGP*SAGQGR Trigger: TCTTCCCTGACCTGCAGATCACGGACCAGGTGGCCC...TGCAAGTGCTACCCATGTGAGTGTGTGAAGTTTCTCTACTAAGTAAAACACAGG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| CDS-3UTR GCA 90 bp | AGGAAAAGGGCCTGTGTTTTACTTAGTAGAGAAACTTCACACACTCACATGGGTTCGATGTGCTGCTGCTaGTGCTGCTTGTCGCTGCCC | + |
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Preference number: 4 (lower is better) Translates to: RKRACVLLSRETSHTHMGSMCCC*CCLSLP Trigger: GGGCAGCGACAAGCAGCAGCAGCAGCAGCACATCGA...ACCCATGTGAGTGTGTGAAGTTTCTCTACTAAGTAAAACACAGGCCCTTTTCCT 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| CDS-3UTR CCA 90 bp | GGCAAATACACTAGTCTACCTTTGAACAAACTGATTGAGGGAGTAAACAAATGGAGGAGCGGGGCGACATaGAGGGGCATGGAGCACTGG | + |
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Preference number: 4 (lower is better) Translates to: GKYTSLPLNKLIEGVNKWRSGAT*RGMEHW Trigger: CCAGTGCTCCATGCCCCTCCATGTCGCCCCGCTCCT...CCATTTGTTTACTCCCTCAATCAGTTTGTTCAAAGGTAGACTAGTGTATTTGCC 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| CDS-3UTR CCA 90 bp | AAACTGATTGAGGGAGTAAACAAATGGGGCCCCCGCTGGCTCAGCGAGAACTCATCTTCCAAAGCACACTaGGACTTTTCCTGCAAGCTT | + |
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Preference number: 4 (lower is better) Translates to: KLIEGVNKWGPRWLSENSSSKAH*DFSCKL Trigger: AAGCTTGCAGGAAAAGTCCCAGTGTGCTTTGGAAGA...TGAGTTCTCGCTGAGCCAGCGGGGGCCCCATTTGTTTACTCCCTCAATCAGTTT 50% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| CDS-3UTR GCA 90 bp | CCAAAAATGGTTTCTAAGACCAAAGGATCCCAGAGCAGTACAGATTGTTTCTATATGTGCTGCTGCTGCTaGTGCTTGTCGCTGCCCGGG | + |
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Preference number: 4 (lower is better) Translates to: PKMVSKTKGSQSSTDCFYMCCCC*CLSLPG Trigger: CCCGGGCAGCGACAAGCAGCAGCAGCAGCAGCACAT...ATAGAAACAATCTGTACTGCTCTGGGATCCTTTGGTCTTAGAAACCATTTTTGG 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| CDS-3UTR GCA 90 bp | AGGAAAAGGGCCTGTGTTTTACTTAGTAGAGAAACTTCACACACTCACATGGGTACCACGCACTCGATGTaGTGCTGCTGCTGCTGCTTG | + |
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Preference number: 4 (lower is better) Translates to: RKRACVLLSRETSHTHMGTTHSM*CCCCCL Trigger: CAAGCAGCAGCAGCAGCAGCACATCGAGTGCGTGGT...ACCCATGTGAGTGTGTGAAGTTTCTCTACTAAGTAAAACACAGGCCCTTTTCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| CDS-3UTR GCA 90 bp | GGCAAATACACTAGTCTACCTTTGAACAAACTGATTGAGGGAGTAAACAAATGGGACATGGGTGAAGCGTaGAGGCCAGCAGCGGCAAGG | + |
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Preference number: 4 (lower is better) Translates to: GKYTSLPLNKLIEGVNKWDMGEA*RPAAAR Trigger: CCTTGCCGCTGCTGGCCTGCACGCTTCACCCATGTC...CCATTTGTTTACTCCCTCAATCAGTTTGTTCAAAGGTAGACTAGTGTATTTGCC 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| CDS-3UTR CCA 90 bp | GGAAAAACTCATTGCAAACAACTGCCCTCTATTTACAGTTCTGTGATTAGCTTGTGCCCGTGGGTAGGCTaGGTAGGAGGCATCCTGCCT | + |
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Preference number: 4 (lower is better) Translates to: GKTHCKQLPSIYSSVISLCPWVG*VGGILP Trigger: AGGCAGGATGCCTCCTACCCAGCCTACCCACGGGCA...CAAGCTAATCACAGAACTGTAAATAGAGGGCAGTTGTTTGCAATGAGTTTTTCC 49% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| CDS-3UTR CCA 90 bp | AGGAAAAGGGCCTGTGTTTTACTTAGTAGAGAAACTTCACACACTCACATGGGTCCGAACCGTGTTGGCTaGTTGGGGTACTGGCTCCTA | + |
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Preference number: 4 (lower is better) Translates to: RKRACVLLSRETSHTHMGPNRVG*LGYWLL Trigger: TAGGAGCCAGTACCCCAACCAGCCAACACGGTTCGG...ACCCATGTGAGTGTGTGAAGTTTCTCTACTAAGTAAAACACAGGCCCTTTTCCT 49% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| CDS-3UTR CCA 90 bp | AAACTGATTGAGGGAGTAAACAAATGGGGCCCCCGCTGGCTCAGCGAGAACTCATTGAATTGCCATATATaGCCAGTTAAAACTGCTGCC | + |
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Preference number: 4 (lower is better) Translates to: KLIEGVNKWGPRWLSENSLNCHI*PVKTAA Trigger: GGCAGCAGTTTTAACTGGCCATATATGGCAATTCAA...TGAGTTCTCGCTGAGCCAGCGGGGGCCCCATTTGTTTACTCCCTCAATCAGTTT 48% GC, longest homopolymer 5 nt, total homopolymer stretches 13 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| CDS-3UTR CCA 90 bp | GGCAAATACACTAGTCTACCTTTGAACAAACTGATTGAGGGAGTAAACAAATGGAGGGGCATGGAGCACTaGGCCGCATTCAACACGAAC | + |
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Preference number: 4 (lower is better) Translates to: GKYTSLPLNKLIEGVNKWRGMEH*AAFNTN Trigger: GTTCGTGTTGAATGCGGCCCAGTGCTCCATGCCCCT...CCATTTGTTTACTCCCTCAATCAGTTTGTTCAAAGGTAGACTAGTGTATTTGCC 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR CAA 72 bp | AGGGAGGGCAGCTTGGAAAGTCTAAATAAGAACAAATaGCAAGTTCCCAGCAGTGAGCTCTTCCCAAACCAG | + |
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Preference number: 4 (lower is better) Translates to: REGSLESLNKNK*QVPSSELFPNQ Trigger: CTGGTTTGGGAAGAGCTCACTGCTGGGAACTTGCAATTTGTTCTTATTTAGACTTTCCAAGCTGCCCTCCCT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| CDS-3UTR TCA 90 bp | CCAAAAATGGTTTCTAAGACCAAAGGATCCCAGAGCAGTACAGATTGTTTCTATCAGACCACAGGCATCTaGGGTGAACAGGACTATGGC | + |
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Preference number: 4 (lower is better) Translates to: PKMVSKTKGSQSSTDCFYQTTGI*GEQDYG Trigger: GCCATAGTCCTGTTCACCTCAGATGCCTGTGGTCTG...ATAGAAACAATCTGTACTGCTCTGGGATCCTTTGGTCTTAGAAACCATTTTTGG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| CDS-3UTR TCA 90 bp | GGCAAATACACTAGTCTACCTTTGAACAAACTGATTGAGGGAGTAAACAAATGGCAATTGCTCTATGACTaGGGAGGAGACCGTGCGGAG | + |
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Preference number: 4 (lower is better) Translates to: GKYTSLPLNKLIEGVNKWQLLYD*GGDRAE Trigger: CTCCGCACGGTCTCCTCCTCAGTCATAGAGCAATTG...CCATTTGTTTACTCCCTCAATCAGTTTGTTCAAAGGTAGACTAGTGTATTTGCC 46% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| CDS-3UTR TCA 90 bp | CAAAAACCTCAGCTTGTGTCTTGGACACATTCCTTGGCTGCCAATAAATTCCACAAAACAATTGCTCTATaGCTGAGGAGGAGACCGTGC | + |
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Preference number: 4 (lower is better) Translates to: QKPQLVSWTHSLAANKFHKTIAL*LRRRPC Trigger: GCACGGTCTCCTCCTCAGTCATAGAGCAATTGTTTT...GTGGAATTTATTGGCAGCCAAGGAATGTGTCCAAGACACAAGCTGAGGTTTTTG 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| CDS-3UTR CCA 90 bp | GGCAAATACACTAGTCTACCTTTGAACAAACTGATTGAGGGAGTAAACAAATGGCTTTCCGAACCGTGTTaGCTGGTTGGGGTACTGGCT | + |
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Preference number: 4 (lower is better) Translates to: GKYTSLPLNKLIEGVNKWLSEPC*LVGVLA Trigger: AGCCAGTACCCCAACCAGCCAACACGGTTCGGAAAG...CCATTTGTTTACTCCCTCAATCAGTTTGTTCAAAGGTAGACTAGTGTATTTGCC 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| CDS-3UTR GCA 90 bp | TGTGTTTTACTTAGTAGAGAAACTTCACACACTCACATGGGTAGCACTTGCAAGCACTGGGACTTTTCCTaGAAGCTTTCCACATGGGCT | + |
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Preference number: 4 (lower is better) Translates to: CVLLSRETSHTHMGSTCKHWDFS*KLSTWA Trigger: AGCCCATGTGGAAAGCTTGCAGGAAAAGTCCCAGTG...CTTGCAAGTGCTACCCATGTGAGTGTGTGAAGTTTCTCTACTAAGTAAAACACA 44% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| CDS-3UTR GCA 90 bp | ATACTTTTCACAATACCTTCCCTAAGCAGGCACTTAAGTGTGACAAATATAAGGGCTGAAGAGCATCCGTaGGGCCAGTTCGCAAATGTT | + |
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Preference number: 4 (lower is better) Translates to: ILFTIPSLSRHLSVTNIRAEEHP*GQFANV Trigger: AACATTTGCGAACTGGCCGCACGGATGCTCTTCAGC...CCTTATATTTGTCACACTTAAGTGCCTGCTTAGGGAAGGTATTGTGAAAAGTAT 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| CDS-3UTR CCA 90 bp | GGAAAAACTCATTGCAAACAACTGCCCTCTATTTACAGTTCTGTGATTAGCTTGTTCTCCACTTGCTCTTaGAAGATCCGTATGTGGTCC | + |
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Preference number: 4 (lower is better) Translates to: GKTHCKQLPSIYSSVISLFSTCS*KIRMWS Trigger: GGACCACATACGGATCTTCCAAGAGCAAGTGGAGAA...CAAGCTAATCACAGAACTGTAAATAGAGGGCAGTTGTTTGCAATGAGTTTTTCC 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| 3UTR CAA 72 bp | CCACAACATGGTAAAAGTATTGTCAGGGAGGGCAGCTaGGAAAGTCTAAATAAGAACAAATTGCAAGTTCCC | + |
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Preference number: 4 (lower is better) Translates to: PQHGKSIVREGS*ESLNKNKLQVP Trigger: GGGAACTTGCAATTTGTTCTTATTTAGACTTTCCAAGCTGCCCTCCCTGACAATACTTTTACCATGTTGTGG 42% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| CDS-3UTR GCA 90 bp | GGAAAAACTCATTGCAAACAACTGCCCTCTATTTACAGTTCTGTGATTAGCTTGCGGACGAAAAACAATTaGTCTATGACTGAGGAGGAG | + |
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Preference number: 4 (lower is better) Translates to: GKTHCKQLPSIYSSVISLRTKNN*SMTEEE Trigger: CTCCTCCTCAGTCATAGAGCAATTGTTTTTCGTCCG...CAAGCTAATCACAGAACTGTAAATAGAGGGCAGTTGTTTGCAATGAGTTTTTCC 41% GC, longest homopolymer 5 nt, total homopolymer stretches 10 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| CDS-3UTR CCA 90 bp | ATACTTTTCACAATACCTTCCCTAAGCAGGCACTTAAGTGTGACAAATATAAGGTGGAAGATCCGTATGTaGTCCATAAAAGCGACCACC | + |
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Preference number: 4 (lower is better) Translates to: ILFTIPSLSRHLSVTNIRWKIRM*SIKATT Trigger: GGTGGTCGCTTTTATGGACCACATACGGATCTTCCA...CCTTATATTTGTCACACTTAAGTGCCTGCTTAGGGAAGGTATTGTGAAAAGTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| CDS-3UTR CCA 90 bp | ATACTTTTCACAATACCTTCCCTAAGCAGGCACTTAAGTGTGACAAATATAAGGTGCAAGCTTTCCACATaGGCTACATCAGACAGACCA | + |
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Preference number: 4 (lower is better) Translates to: ILFTIPSLSRHLSVTNIRCKLST*ATSDRP Trigger: TGGTCTGTCTGATGTAGCCCATGTGGAAAGCTTGCA...CCTTATATTTGTCACACTTAAGTGCCTGCTTAGGGAAGGTATTGTGAAAAGTAT 41% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| CDS CCA 90 bp | TACTCTTCCAAAGCACACTGGGACTTTTCCTGCAAGCTTTCCACATaGGCTACATCAGACAGACCACAGGCATCTGAGGTGAACAGGACT | + |
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Preference number: 5 (lower is better) Translates to: YSSKAHWDFSCKLST*ATSDRPQASEVNRT Trigger: AGTCCTGTTCACCTCAGATGCCTGTGGTCTGTCTGATGTAGCCCATGTGGAAAGCTTGCAGGAAAAGTCCCAGTGTGCTTTGGAAGAGTA 50% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032768.15 ENSMUST00000089565.6 |
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| CDS-3UTR CAA 90 bp | GGAAAAACTCATTGCAAACAACTGCCCTCTATTTACAGTTCTGTGATTAGCTTGTTGAGGGGGTCCCCGTaGGTCAGGGCAAACTGCCCG | + |
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Preference number: 5 (lower is better) Translates to: GKTHCKQLPSIYSSVISLLRGSP*VRANCP Trigger: CGGGCAGTTTGCCCTGACCAACGGGGACCCCCTCAA...CAAGCTAATCACAGAACTGTAAATAGAGGGCAGTTGTTTGCAATGAGTTTTTCC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 14 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| CDS-3UTR CAA 90 bp | CCCGTTTTAAGATTAAACCACAACATGGTAAAAGTATTGTCAGGGAGGGCAGCTAACAGGACTATGGCCTaGAGGCAGCTATACTCGGCG | + |
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Preference number: 5 (lower is better) Translates to: PVLRLNHNMVKVLSGRAANRTMA*RQLYSA Trigger: CGCCGAGTATAGCTGCCTCAAGGCCATAGTCCTGTT...AGCTGCCCTCCCTGACAATACTTTTACCATGTTGTGGTTTAATCTTAAAACGGG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| CDS-3UTR CAA 90 bp | GGAAAAACTCATTGCAAACAACTGCCCTCTATTTACAGTTCTGTGATTAGCTTGGCTTTCCGAACCGTGTaGGCTGGTTGGGGTACTGGC | + |
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Preference number: 5 (lower is better) Translates to: GKTHCKQLPSIYSSVISLAFRTV*AGWGTG Trigger: GCCAGTACCCCAACCAGCCAACACGGTTCGGAAAGC...CAAGCTAATCACAGAACTGTAAATAGAGGGCAGTTGTTTGCAATGAGTTTTTCC 48% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| CDS-3UTR CAA 90 bp | CAAAAACCTCAGCTTGTGTCTTGGACACATTCCTTGGCTGCCAATAAATTCCACCTTCTCCACTTGCTCTaGGAAGATCCGTATGTGGTC | + |
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Preference number: 5 (lower is better) Translates to: QKPQLVSWTHSLAANKFHLLHLL*EDPYVV Trigger: GACCACATACGGATCTTCCAAGAGCAAGTGGAGAAG...GTGGAATTTATTGGCAGCCAAGGAATGTGTCCAAGACACAAGCTGAGGTTTTTG 47% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| CDS GCA 72 bp | CGCACTCGATGTGCTGCTGCTGCTGCTGCTTGTCGCTaGCCGGGCCGCCAGGGCCGCCCTGGCCGCCAGCCG | + |
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Preference number: 6 (lower is better) Translates to: RTRCAAAAAACR*PGRQGRPGRQP Trigger: CGGCTGGCGGCCAGGGCGGCCCTGGCGGCCCGGGCAGCGACAAGCAGCAGCAGCAGCAGCACATCGAGTGCG 76% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000032768.15 |
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| CDS GCA 72 bp | AAAGCGACCACCCGGTCGGCTGACATGGGTGAAGCGTaGAGGCCAGCAGCGGCAAGGAGCGGGGCGACATGG | + |
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Preference number: 6 (lower is better) Translates to: KATTRSADMGEA*RPAAARSGATW Trigger: CCATGTCGCCCCGCTCCTTGCCGCTGCTGGCCTGCACGCTTCACCCATGTCAGCCGACCGGGTGGTCGCTTT 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 3 transcripts: ENSMUST00000032768.15 ENSMUST00000089565.6 ENSMUST00000208081.2 |
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| CDS CCA 72 bp | AAAGCACACTGGGACTTTTCCTGCAAGCTTTCCACATaGGCTACATCAGACAGACCACAGGCATCTGAGGTG | + |
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Preference number: 6 (lower is better) Translates to: KAHWDFSCKLST*ATSDRPQASEV Trigger: CACCTCAGATGCCTGTGGTCTGTCTGATGTAGCCCATGTGGAAAGCTTGCAGGAAAAGTCCCAGTGTGCTTT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032768.15 ENSMUST00000089565.6 |
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| CDS GCA 72 bp | CTAACGTACTCTTCCAAAGCACACTGGGACTTTTCCTaGAAGCTTTCCACATGGGCTACATCAGACAGACCA | + |
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Preference number: 6 (lower is better) Translates to: LTYSSKAHWDFS*KLSTWATSDRP Trigger: TGGTCTGTCTGATGTAGCCCATGTGGAAAGCTTGCAGGAAAAGTCCCAGTGTGCTTTGGAAGAGTACGTTAG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000032768.15 ENSMUST00000089565.6 |
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