Pregenerated sensors for NR2E1 (Mus musculus)
Ensembl gene IDs: ENSMUSG00000019803Ensembl transcript IDs: ENSMUST00000019938.11, ENSMUST00000105498.3
Found 101 sensor candidate(s). Results are sorted by "preference number" (better first), and then by GC (higher first).
| Type | Sensor | Details |
|---|---|---|
| 3UTR TCA 90 bp | GGGATCTTCCAGGTCAGAGGCAGAACCTGGCTCAGCCTGTGCTGGTaGGCCCAGTTCACCCCATCCCAGGGCATGGCGACAGTAACTGTT | + |
|
Preference number: 1 (lower is better) Translates to: GIFQVRGRTWLSLCW*AQFTPSQGMATVTV Trigger: AACAGTTACTGTCGCCATGCCCTGGGATGGGGTGAACTGGGCTCACCAGCACAGGCTGAGCCAGGTTCTGCCTCTGACCTGGAAGATCCC 60% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| 3UTR CCA 90 bp | ACGGGACAGCGACCACCTCACCCAATCACCTGGTTCCACGTCATTTaGTTTTGCTGTCTGGACTCCTCCTCCTTGGACGGAGGTTCTCAG | + |
|
Preference number: 1 (lower is better) Translates to: TGQRPPHPITWFHVI*FCCLDSSSLDGGSQ Trigger: CTGAGAACCTCCGTCCAAGGAGGAGGAGTCCAGACAGCAAAACCAAATGACGTGGAACCAGGTGATTGGGTGAGGTGGTCGCTGTCCCGT 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| 3UTR CCA 90 bp | CCTGGTTCCACGTCATTTGGTTTTGCTGTCTGGACTCCTCCTCCTTaGACGGAGGTTCTCAGTAGAGCTGTTGTGTCTCACCACCGCTGC | + |
|
Preference number: 1 (lower is better) Translates to: PGSTSFGFAVWTPPP*TEVLSRAVVSHHRC Trigger: GCAGCGGTGGTGAGACACAACAGCTCTACTGAGAACCTCCGTCCAAGGAGGAGGAGTCCAGACAGCAAAACCAAATGACGTGGAACCAGG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| 3UTR TCA 90 bp | TTTCTGGCTTGTGTCCCTCCCTGTTCACTGTCTGGTGTGACTCGCTaGCCCTATGGCCTTTGGTTTCAGCACTTTGATGACGGGACAGCG | + |
|
Preference number: 1 (lower is better) Translates to: FLACVPPCSLSGVTR*PYGLWFQHFDDGTA Trigger: CGCTGTCCCGTCATCAAAGTGCTGAAACCAAAGGCCATAGGGTCAGCGAGTCACACCAGACAGTGAACAGGGAGGGACACAAGCCAGAAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| 3UTR CCA 90 bp | CACCTCACCCAATCACCTGGTTCCACGTCATTTGGTTTTGCTGTCTaGACTCCTCCTCCTTGGACGGAGGTTCTCAGTAGAGCTGTTGTG | + |
|
Preference number: 1 (lower is better) Translates to: HLTQSPGSTSFGFAV*TPPPWTEVLSRAVV Trigger: CACAACAGCTCTACTGAGAACCTCCGTCCAAGGAGGAGGAGTCCAGACAGCAAAACCAAATGACGTGGAACCAGGTGATTGGGTGAGGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| 3UTR CCA 90 bp | TTCAGCACTTTGATGACGGGACAGCGACCACCTCACCCAATCACCTaGTTCCACGTCATTTGGTTTTGCTGTCTGGACTCCTCCTCCTTG | + |
|
Preference number: 1 (lower is better) Translates to: FSTLMTGQRPPHPIT*FHVIWFCCLDSSSL Trigger: CAAGGAGGAGGAGTCCAGACAGCAAAACCAAATGACGTGGAACCAGGTGATTGGGTGAGGTGGTCGCTGTCCCGTCATCAAAGTGCTGAA 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| 3UTR-3UTR TCA 90 bp | ACCTGGTTCCACGTCATTTGGTTTTGCTGTCTGGACTCCTCCTCCTTGGACGGACTCAGCCTGTGCTGGTaGGCCCAGTTCACCCCATCC | + |
|
Preference number: 2 (lower is better) Translates to: TWFHVIWFCCLDSSSLDGLSLCW*AQFTPS Trigger: GGATGGGGTGAACTGGGCTCACCAGCACAGGCTGAG...TCCGTCCAAGGAGGAGGAGTCCAGACAGCAAAACCAAATGACGTGGAACCAGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| 3UTR CAA 90 bp | ACAGCGACCACCTCACCCAATCACCTGGTTCCACGTCATTTGGTTTaGCTGTCTGGACTCCTCCTCCTTGGACGGAGGTTCTCAGTAGAG | + |
|
Preference number: 2 (lower is better) Translates to: TATTSPNHLVPRHLV*LSGLLLLGRRFSVE Trigger: CTCTACTGAGAACCTCCGTCCAAGGAGGAGGAGTCCAGACAGCAAAACCAAATGACGTGGAACCAGGTGATTGGGTGAGGTGGTCGCTGT 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| 3UTR-3UTR GCA 90 bp | CACCCAATCACCTGGTTCCACGTCATTTGGTTTTGCTGTCTGGACTCCTCCTCCCTCACCCTGAAGTCTTaGGGAGAAGTGCCATTGTCC | + |
|
Preference number: 2 (lower is better) Translates to: HPITWFHVIWFCCLDSSSLTLKS*GEVPLS Trigger: GGACAATGGCACTTCTCCGCAAGACTTCAGGGTGAG...GGAGGAGGAGTCCAGACAGCAAAACCAAATGACGTGGAACCAGGTGATTGGGTG 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| 3UTR CAA 90 bp | TTCAGGAATCTGTTTAGCACGCATCTCCTTGAAGTTCTTTCTGGCTaGTGTCCCTCCCTGTTCACTGTCTGGTGTGACTCGCTGACCCTA | + |
|
Preference number: 2 (lower is better) Translates to: FRNLFSTHLLEVLSG*CPSLFTVWCDSLTL Trigger: TAGGGTCAGCGAGTCACACCAGACAGTGAACAGGGAGGGACACAAGCCAGAAAGAACTTCAAGGAGATGCGTGCTAAACAGATTCCTGAA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| 3UTR-3UTR CCA 90 bp | CAGAGTTTTCTGAAAGGCATCCAAGAGTCTCAGGCTGTTAGCAATGGAACGTTCACTGTTGTAACCACCTaGCCTTTCCAGCTGTCCTGT | + |
|
Preference number: 2 (lower is better) Translates to: QSFLKGIQESQAVSNGTFTVVTT*PFQLSC Trigger: ACAGGACAGCTGGAAAGGCCAGGTGGTTACAACAGT...GAACGTTCCATTGCTAACAGCCTGAGACTCTTGGATGCCTTTCAGAAAACTCTG 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| 3UTR-3UTR CCA 90 bp | CAGAGTTTTCTGAAAGGCATCCAAGAGTCTCAGGCTGTTAGCAATGGAACGTTCAATACTGCCCCATCTTaGAAAAGTGGGTACTGGAGC | + |
|
Preference number: 2 (lower is better) Translates to: QSFLKGIQESQAVSNGTFNTAPS*KSGYWS Trigger: GCTCCAGTACCCACTTTTCCAAGATGGGGCAGTATT...GAACGTTCCATTGCTAACAGCCTGAGACTCTTGGATGCCTTTCAGAAAACTCTG 47% GC, longest homopolymer 4 nt, total homopolymer stretches 12 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| 3UTR-3UTR TCA 90 bp | TTTGTACAAGAGAAGTTTGACTCATCCTATGCTAAGCCAGTGCTGAATTTCCCCTCTTTCAGCTTTGAATaGTTCAGCGGGATCTTCCAG | + |
|
Preference number: 2 (lower is better) Translates to: FVQEKFDSSYAKPVLNFPSFSFE*FSGIFQ Trigger: CTGGAAGATCCCGCTGAATCATTCAAAGCTGAAAGA...GGGGAAATTCAGCACTGGCTTAGCATAGGATGAGTCAAACTTCTCTTGTACAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| 3UTR-3UTR TCA 90 bp | TTTGTACAAGAGAAGTTTGACTCATCCTATGCTAAGCCAGTGCTGAATTTCCCCCTTGTCTTTCAGCTTTaGATGATTCAGCGGGATCTT | + |
|
Preference number: 2 (lower is better) Translates to: FVQEKFDSSYAKPVLNFPLVFQL*MIQRDL Trigger: AAGATCCCGCTGAATCATTCAAAGCTGAAAGACAAG...GGGGAAATTCAGCACTGGCTTAGCATAGGATGAGTCAAACTTCTCTTGTACAAA 42% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| 3UTR TCA 72 bp | CAGGTCAGAGGCAGAACCTGGCTCAGCCTGTGCTGGTaGGCCCAGTTCACCCCATCCCAGGGCATGGCGACA | + |
|
Preference number: 3 (lower is better) Translates to: QVRGRTWLSLCW*AQFTPSQGMAT Trigger: TGTCGCCATGCCCTGGGATGGGGTGAACTGGGCTCACCAGCACAGGCTGAGCCAGGTTCTGCCTCTGACCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| 3UTR CCA 72 bp | TCCCAGGGCATGGCGACAGTAACTGTTGTAACCACCTaGCCTTTCCAGCTGTCCTGTTTCAGGGGGACAGCA | + |
|
Preference number: 3 (lower is better) Translates to: SQGMATVTVVTT*PFQLSCFRGTA Trigger: TGCTGTCCCCCTGAAACAGGACAGCTGGAAAGGCCAGGTGGTTACAACAGTTACTGTCGCCATGCCCTGGGA 57% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| 3UTR GCA 72 bp | GAGGTTCTCAGTAGAGCTGTTGTGTCTCACCACCGCTaGGCTCACCCTGAAGTCTTGCGGAGAAGTGCCATT | + |
|
Preference number: 3 (lower is better) Translates to: EVLSRAVVSHHR*AHPEVLRRSAI Trigger: AATGGCACTTCTCCGCAAGACTTCAGGGTGAGCGCAGCGGTGGTGAGACACAACAGCTCTACTGAGAACCTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| 3UTR CCA 72 bp | CGACCACCTCACCCAATCACCTGGTTCCACGTCATTTaGTTTTGCTGTCTGGACTCCTCCTCCTTGGACGGA | + |
|
Preference number: 3 (lower is better) Translates to: RPPHPITWFHVI*FCCLDSSSLDG Trigger: TCCGTCCAAGGAGGAGGAGTCCAGACAGCAAAACCAAATGACGTGGAACCAGGTGATTGGGTGAGGTGGTCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| 3UTR TCA 72 bp | TTCTGGCTTGTGTCCCTCCCTGTTCACTGTCTGGTGTaGCTCGCTGACCCTATGGCCTTTGGTTTCAGCACT | + |
|
Preference number: 3 (lower is better) Translates to: FWLVSLPVHCLV*LADPMAFGFST Trigger: AGTGCTGAAACCAAAGGCCATAGGGTCAGCGAGTCACACCAGACAGTGAACAGGGAGGGACACAAGCCAGAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| 3UTR GCA 72 bp | TTGTGTCTCACCACCGCTGCGCTCACCCTGAAGTCTTaGGGAGAAGTGCCATTGTCCTCAGTTCCTTTAACG | + |
|
Preference number: 3 (lower is better) Translates to: LCLTTAALTLKS*GEVPLSSVPLT Trigger: CGTTAAAGGAACTGAGGACAATGGCACTTCTCCGCAAGACTTCAGGGTGAGCGCAGCGGTGGTGAGACACAA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| 3UTR GCA 72 bp | CCTCACCCAATCACCTGGTTCCACGTCATTTGGTTTTaGTGTCTGGACTCCTCCTCCTTGGACGGAGGTTCT | + |
|
Preference number: 3 (lower is better) Translates to: PHPITWFHVIWF*CLDSSSLDGGS Trigger: AGAACCTCCGTCCAAGGAGGAGGAGTCCAGACAGCAAAACCAAATGACGTGGAACCAGGTGATTGGGTGAGG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| 3UTR CCA 72 bp | TTGATGACGGGACAGCGACCACCTCACCCAATCACCTaGTTCCACGTCATTTGGTTTTGCTGTCTGGACTCC | + |
|
Preference number: 3 (lower is better) Translates to: LMTGQRPPHPIT*FHVIWFCCLDS Trigger: GGAGTCCAGACAGCAAAACCAAATGACGTGGAACCAGGTGATTGGGTGAGGTGGTCGCTGTCCCGTCATCAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| 3UTR TCA 72 bp | TGTGTCCCTCCCTGTTCACTGTCTGGTGTGACTCGCTaGCCCTATGGCCTTTGGTTTCAGCACTTTGATGAC | + |
|
Preference number: 3 (lower is better) Translates to: CVPPCSLSGVTR*PYGLWFQHFDD Trigger: GTCATCAAAGTGCTGAAACCAAAGGCCATAGGGTCAGCGAGTCACACCAGACAGTGAACAGGGAGGGACACA 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| 3UTR CCA 72 bp | GTTCTTTCTGGCTTGTGTCCCTCCCTGTTCACTGTCTaGTGTGACTCGCTGACCCTATGGCCTTTGGTTTCA | + |
|
Preference number: 3 (lower is better) Translates to: VLSGLCPSLFTV*CDSLTLWPLVS Trigger: TGAAACCAAAGGCCATAGGGTCAGCGAGTCACACCAGACAGTGAACAGGGAGGGACACAAGCCAGAAAGAAC 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| 3UTR CCA 72 bp | ACGTCATTTGGTTTTGCTGTCTGGACTCCTCCTCCTTaGACGGAGGTTCTCAGTAGAGCTGTTGTGTCTCAC | + |
|
Preference number: 3 (lower is better) Translates to: TSFGFAVWTPPP*TEVLSRAVVSH Trigger: GTGAGACACAACAGCTCTACTGAGAACCTCCGTCCAAGGAGGAGGAGTCCAGACAGCAAAACCAAATGACGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| 3UTR CCA 72 bp | CAATCACCTGGTTCCACGTCATTTGGTTTTGCTGTCTaGACTCCTCCTCCTTGGACGGAGGTTCTCAGTAGA | + |
|
Preference number: 3 (lower is better) Translates to: QSPGSTSFGFAV*TPPPWTEVLSR Trigger: TCTACTGAGAACCTCCGTCCAAGGAGGAGGAGTCCAGACAGCAAAACCAAATGACGTGGAACCAGGTGATTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| 3UTR-3UTR CAA 90 bp | CAGGCTGTTAGCAATGGAACGTTCAGGAATCTGTTTAGCACGCATCTCCTTGAATTCTCAGTAGAGCTGTaGTGTCTCACCACCGCTGCG | + |
|
Preference number: 3 (lower is better) Translates to: QAVSNGTFRNLFSTHLLEFSVEL*CLTTAA Trigger: CGCAGCGGTGGTGAGACACAACAGCTCTACTGAGAA...TTCAAGGAGATGCGTGCTAAACAGATTCCTGAACGTTCCATTGCTAACAGCCTG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| 3UTR-3UTR CAA 90 bp | TTTGTACAAGAGAAGTTTGACTCATCCTATGCTAAGCCAGTGCTGAATTTCCCCGCTCACCCTGAAGTCTaGCGGAGAAGTGCCATTGTC | + |
|
Preference number: 3 (lower is better) Translates to: FVQEKFDSSYAKPVLNFPAHPEV*RRSAIV Trigger: GACAATGGCACTTCTCCGCAAGACTTCAGGGTGAGC...GGGGAAATTCAGCACTGGCTTAGCATAGGATGAGTCAAACTTCTCTTGTACAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| 3UTR-3UTR CAA 90 bp | CAGAGTTTTCTGAAAGGCATCCAAGAGTCTCAGGCTGTTAGCAATGGAACGTTCGCTTGTCTTTCAGCTTaGAATGATTCAGCGGGATCT | + |
|
Preference number: 3 (lower is better) Translates to: QSFLKGIQESQAVSNGTFACLSA*NDSAGS Trigger: AGATCCCGCTGAATCATTCAAAGCTGAAAGACAAGC...GAACGTTCCATTGCTAACAGCCTGAGACTCTTGGATGCCTTTCAGAAAACTCTG 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| 3UTR-3UTR CAA 90 bp | TTTGTACAAGAGAAGTTTGACTCATCCTATGCTAAGCCAGTGCTGAATTTCCCCCTGGTTCCACGTCATTaGGTTTTGCTGTCTGGACTC | + |
|
Preference number: 3 (lower is better) Translates to: FVQEKFDSSYAKPVLNFPLVPRH*VLLSGL Trigger: GAGTCCAGACAGCAAAACCAAATGACGTGGAACCAG...GGGGAAATTCAGCACTGGCTTAGCATAGGATGAGTCAAACTTCTCTTGTACAAA 46% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| 3UTR-3UTR CAA 90 bp | TTTGTACAAGAGAAGTTTGACTCATCCTATGCTAAGCCAGTGCTGAATTTCCCCTTTGGTTTCAGCACTTaGATGACGGGACAGCGACCA | + |
|
Preference number: 3 (lower is better) Translates to: FVQEKFDSSYAKPVLNFPFGFST*MTGQRP Trigger: TGGTCGCTGTCCCGTCATCAAAGTGCTGAAACCAAA...GGGGAAATTCAGCACTGGCTTAGCATAGGATGAGTCAAACTTCTCTTGTACAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| 3UTR TCA 72 bp | ATGATGGTGTCACATAAAAAGCTACTGTTGATCAACTaGCTTTATGTGCTACGAAGGAGAAGAAAGCATGGC | + |
|
Preference number: 3 (lower is better) Translates to: MMVSHKKLLLIN*LYVLRRRRKHG Trigger: GCCATGCTTTCTTCTCCTTCGTAGCACATAAAGTCAGTTGATCAACAGTAGCTTTTTATGTGACACCATCAT 40% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR CCA 90 bp | CAGCACTTTGATGACGGGACAGCGACCACCTCACCCAATCACCTGGTTCCACGTGGGCTGGCAGCGCCGTaGAGGGGAAGTGCGCAGCGG | + |
|
Preference number: 4 (lower is better) Translates to: QHFDDGTATTSPNHLVPRGLAAP*RGSAQR Trigger: CCGCTGCGCACTTCCCCTCCACGGCGCTGCCAGCCC...ACGTGGAACCAGGTGATTGGGTGAGGTGGTCGCTGTCCCGTCATCAAAGTGCTG 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR GCA 90 bp | CAGCACTTTGATGACGGGACAGCGACCACCTCACCCAATCACCTGGTTCCACGTCCGTGCGGCTCCAGCTaGGTGACCGCTGTGAAGAAA | + |
|
Preference number: 4 (lower is better) Translates to: QHFDDGTATTSPNHLVPRPCGSS*VTAVKK Trigger: TTTCTTCACAGCGGTCACGCAGCTGGAGCCGCACGG...ACGTGGAACCAGGTGATTGGGTGAGGTGGTCGCTGTCCCGTCATCAAAGTGCTG 59% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR CCA 90 bp | AGTAACTGTTGTAACCACCTGGCCTTTCCAGCTGTCCTGTTTCAGGGGGACAGCCCTGTTTGCGGATGGTaGACGTCCGAGGACCCCGCT | + |
|
Preference number: 4 (lower is better) Translates to: SNCCNHLAFPAVLFQGDSPVCGW*TSEDPA Trigger: AGCGGGGTCCTCGGACGTCCACCATCCGCAAACAGG...GCTGTCCCCCTGAAACAGGACAGCTGGAAAGGCCAGGTGGTTACAACAGTTACT 58% GC, longest homopolymer 5 nt, total homopolymer stretches 9 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR CCA 90 bp | CACCCAATCACCTGGTTCCACGTCATTTGGTTTTGCTGTCTGGACTCCTCCTCCCCACCTGTTTGCGGATaGTGGACGTCCGAGGACCCC | + |
|
Preference number: 4 (lower is better) Translates to: HPITWFHVIWFCCLDSSSPPVCG*WTSEDP Trigger: GGGGTCCTCGGACGTCCACCATCCGCAAACAGGTGG...GGAGGAGGAGTCCAGACAGCAAAACCAAATGACGTGGAACCAGGTGATTGGGTG 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR CCA 90 bp | ACCTGGTTCCACGTCATTTGGTTTTGCTGTCTGGACTCCTCCTCCTTGGACGGAGGGGATACTTGGGCGTaGGCTGAGCCAGGCTCACGA | + |
|
Preference number: 4 (lower is better) Translates to: TWFHVIWFCCLDSSSLDGGDTWA*AEPGSR Trigger: TCGTGAGCCTGGCTCAGCCCACGCCCAAGTATCCCC...TCCGTCCAAGGAGGAGGAGTCCAGACAGCAAAACCAAATGACGTGGAACCAGGT 58% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| 3UTR CAA 72 bp | CTCCTCCTCCTTGGACGGAGGTTCTCAGTAGAGCTGTaGTGTCTCACCACCGCTGCGCTCACCCTGAAGTCT | + |
|
Preference number: 4 (lower is better) Translates to: LLLLGRRFSVEL*CLTTAALTLKS Trigger: AGACTTCAGGGTGAGCGCAGCGGTGGTGAGACACAACAGCTCTACTGAGAACCTCCGTCCAAGGAGGAGGAG 58% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR TCA 90 bp | TTTGGTTTTGCTGTCTGGACTCCTCCTCCTTGGACGGAGGTTCTCAGTAGAGCTTACTTGGGCGTGGGCTaGGCCAGGCTCACGAGAGTC | + |
|
Preference number: 4 (lower is better) Translates to: FGFAVWTPPPWTEVLSRAYLGVG*ARLTRV Trigger: GACTCTCGTGAGCCTGGCTCAGCCCACGCCCAAGTA...AGCTCTACTGAGAACCTCCGTCCAAGGAGGAGGAGTCCAGACAGCAAAACCAAA 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| 3UTR CAA 72 bp | GCGACCACCTCACCCAATCACCTGGTTCCACGTCATTaGGTTTTGCTGTCTGGACTCCTCCTCCTTGGACGG | + |
|
Preference number: 4 (lower is better) Translates to: ATTSPNHLVPRH*VLLSGLLLLGR Trigger: CCGTCCAAGGAGGAGGAGTCCAGACAGCAAAACCAAATGACGTGGAACCAGGTGATTGGGTGAGGTGGTCGC 57% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR TCA 90 bp | CTCGCTGACCCTATGGCCTTTGGTTTCAGCACTTTGATGACGGGACAGCGACCAGAGAAGCCTGGCAGCTaGTTCACACACGGACTCAGT | + |
|
Preference number: 4 (lower is better) Translates to: LADPMAFGFSTLMTGQRPEKPGS*FTHGLS Trigger: ACTGAGTCCGTGTGTGAATCAGCTGCCAGGCTTCTC...TGGTCGCTGTCCCGTCATCAAAGTGCTGAAACCAAAGGCCATAGGGTCAGCGAG 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR TCA 90 bp | GCGACAGTAACTGTTGTAACCACCTGGCCTTTCCAGCTGTCCTGTTTCAGGGGGCTAATCGGAGCTGTCTaGACCGAGCCACCACCTCTT | + |
|
Preference number: 4 (lower is better) Translates to: ATVTVVTTWPFQLSCFRGLIGAV*TEPPPL Trigger: AAGAGGTGGTGGCTCGGTTCAGACAGCTCCGATTAG...CCCCCTGAAACAGGACAGCTGGAAAGGCCAGGTGGTTACAACAGTTACTGTCGC 56% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR GCA 90 bp | GAAATCACACAGCATAAGCTACGTTTCGCTTACTCGCTTGGTTCTGAAGGCCACGCCAACTCCAGACCGTaGGGCTCCAGCTGCGTGACC | + |
|
Preference number: 4 (lower is better) Translates to: EITQHKLRFAYSLGSEGHANSRP*GSSCVT Trigger: GGTCACGCAGCTGGAGCCGCACGGTCTGGAGTTGGC...GTGGCCTTCAGAACCAAGCGAGTAAGCGAAACGTAGCTTATGCTGTGTGATTTC 56% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR CCA 90 bp | TTTGGTTTTGCTGTCTGGACTCCTCCTCCTTGGACGGAGGTTCTCAGTAGAGCTCTTCATGGGGATACTTaGGCGTGGGCTGAGCCAGGC | + |
|
Preference number: 4 (lower is better) Translates to: FGFAVWTPPPWTEVLSRALHGDT*AWAEPG Trigger: GCCTGGCTCAGCCCACGCCCAAGTATCCCCATGAAG...AGCTCTACTGAGAACCTCCGTCCAAGGAGGAGGAGTCCAGACAGCAAAACCAAA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR GCA 90 bp | TTTGGTTTTGCTGTCTGGACTCCTCCTCCTTGGACGGAGGTTCTCAGTAGAGCTAGAGAGCCACCTGTTTaGGGATGGTGGACGTCCGAG | + |
|
Preference number: 4 (lower is better) Translates to: FGFAVWTPPPWTEVLSRAREPPV*GWWTSE Trigger: CTCGGACGTCCACCATCCGCAAACAGGTGGCTCTCT...AGCTCTACTGAGAACCTCCGTCCAAGGAGGAGGAGTCCAGACAGCAAAACCAAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR GCA 90 bp | CAGGCTGTTAGCAATGGAACGTTCAGGAATCTGTTTAGCACGCATCTCCTTGAAGCCGTGGAGGGGAAGTaGGCAGCGGCCCCATTGTCT | + |
|
Preference number: 4 (lower is better) Translates to: QAVSNGTFRNLFSTHLLEAVEGK*AAAPLS Trigger: AGACAATGGGGCCGCTGCGCACTTCCCCTCCACGGC...TTCAAGGAGATGCGTGCTAAACAGATTCCTGAACGTTCCATTGCTAACAGCCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR CCA 90 bp | CAGCACTTTGATGACGGGACAGCGACCACCTCACCCAATCACCTGGTTCCACGTCGACACGCCCTGCATTaGTTTCTGTGTGTCTTGTCT | + |
|
Preference number: 4 (lower is better) Translates to: QHFDDGTATTSPNHLVPRRHALH*FLCVLS Trigger: AGACAAGACACACAGAAACCAATGCAGGGCGTGTCG...ACGTGGAACCAGGTGATTGGGTGAGGTGGTCGCTGTCCCGTCATCAAAGTGCTG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR CCA 90 bp | CTGAAAGGCATCCAAGAGTCTCAGGCTGTTAGCAATGGAACGTTCAGGAATCTGGAAGAAAGCAGGGGCTaGCAGCGCCGTGGAGGGGAA | + |
|
Preference number: 4 (lower is better) Translates to: LKGIQESQAVSNGTFRNLEESRG*QRRGGE Trigger: TTCCCCTCCACGGCGCTGCCAGCCCCTGCTTTCTTC...CAGATTCCTGAACGTTCCATTGCTAACAGCCTGAGACTCTTGGATGCCTTTCAG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR GCA 90 bp | CAGCACTTTGATGACGGGACAGCGACCACCTCACCCAATCACCTGGTTCCACGTGGCTGGCACACTCTTTaGCCACTTGATGCTCATAAA | + |
|
Preference number: 4 (lower is better) Translates to: QHFDDGTATTSPNHLVPRGWHTL*PLDAHK Trigger: TTTATGAGCATCAAGTGGGCAAAGAGTGTGCCAGCC...ACGTGGAACCAGGTGATTGGGTGAGGTGGTCGCTGTCCCGTCATCAAAGTGCTG 53% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR GCA 90 bp | ACCTGGTTCCACGTCATTTGGTTTTGCTGTCTGGACTCCTCCTCCTTGGACGGATCAGTCGACACGCCCTaGATTGGTTTCTGTGTGTCT | + |
|
Preference number: 4 (lower is better) Translates to: TWFHVIWFCCLDSSSLDGSVDTP*IGFCVS Trigger: AGACACACAGAAACCAATGCAGGGCGTGTCGACTGA...TCCGTCCAAGGAGGAGGAGTCCAGACAGCAAAACCAAATGACGTGGAACCAGGT 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR GCA 90 bp | ACCTGGTTCCACGTCATTTGGTTTTGCTGTCTGGACTCCTCCTCCTTGGACGGAAAGGGATATCTAAAATaGGGCTTGTTGATCCGGCGG | + |
|
Preference number: 4 (lower is better) Translates to: TWFHVIWFCCLDSSSLDGKGYLK*GLLIRR Trigger: CCGCCGGATCAACAAGCCGCATTTTAGATATCCCTT...TCCGTCCAAGGAGGAGGAGTCCAGACAGCAAAACCAAATGACGTGGAACCAGGT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR GCA 90 bp | CAGGCTGTTAGCAATGGAACGTTCAGGAATCTGTTTAGCACGCATCTCCTTGAAAGTGCTTCCCGGAGCTaGGGTCACCACACACTTTGC | + |
|
Preference number: 4 (lower is better) Translates to: QAVSNGTFRNLFSTHLLESASRS*GHHTLC Trigger: GCAAAGTGTGTGGTGACCGCAGCTCCGGGAAGCACT...TTCAAGGAGATGCGTGCTAAACAGATTCCTGAACGTTCCATTGCTAACAGCCTG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR GCA 90 bp | AGTAACTGTTGTAACCACCTGGCCTTTCCAGCTGTCCTGTTTCAGGGGGACAGCCGAGCCACCACCTCTTaGAAAGCCTGTATTTCAGAT | + |
|
Preference number: 4 (lower is better) Translates to: SNCCNHLAFPAVLFQGDSRATTS*KACISD Trigger: ATCTGAAATACAGGCTTTGCAAGAGGTGGTGGCTCG...GCTGTCCCCCTGAAACAGGACAGCTGGAAAGGCCAGGTGGTTACAACAGTTACT 51% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR CCA 90 bp | AGCATGGCTTGTCTTTCAGCTTTGAATGATTCAGCGGGATCTTCCAGGTCAGAGACGGGGCATCCTCCCTaGTTTCCAGACTTGCAGACA | + |
|
Preference number: 4 (lower is better) Translates to: SMACLSALNDSAGSSRSETGHPP*FPDLQT Trigger: TGTCTGCAAGTCTGGAAACCAGGGAGGATGCCCCGT...CTCTGACCTGGAAGATCCCGCTGAATCATTCAAAGCTGAAAGACAAGCCATGCT 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR CCA 90 bp | CTGAAAGGCATCCAAGAGTCTCAGGCTGTTAGCAATGGAACGTTCAGGAATCTGGTCCCATTCACTTCATaGGGATACTTGGGCGTGGGC | + |
|
Preference number: 4 (lower is better) Translates to: LKGIQESQAVSNGTFRNLVPFTS*GYLGVG Trigger: GCCCACGCCCAAGTATCCCCATGAAGTGAATGGGAC...CAGATTCCTGAACGTTCCATTGCTAACAGCCTGAGACTCTTGGATGCCTTTCAG 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR CCA 90 bp | CAGAGTTTTCTGAAAGGCATCCAAGAGTCTCAGGCTGTTAGCAATGGAACGTTCCTTGGAGAGCGGCAATaGCGGCAGCATTCCGGAAAC | + |
|
Preference number: 4 (lower is better) Translates to: QSFLKGIQESQAVSNGTFLGERQ*RQHSGN Trigger: GTTTCCGGAATGCTGCCGCCATTGCCGCTCTCCAAG...GAACGTTCCATTGCTAACAGCCTGAGACTCTTGGATGCCTTTCAGAAAACTCTG 51% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR TCA 90 bp | CTGAAAGGCATCCAAGAGTCTCAGGCTGTTAGCAATGGAACGTTCAGGAATCTGCTGTTGAGAGTTAGCTaGGCCTCATCTTGGAGAGCG | + |
|
Preference number: 4 (lower is better) Translates to: LKGIQESQAVSNGTFRNLLLRVS*ASSWRA Trigger: CGCTCTCCAAGATGAGGCTCAGCTAACTCTCAACAG...CAGATTCCTGAACGTTCCATTGCTAACAGCCTGAGACTCTTGGATGCCTTTCAG 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR GCA 90 bp | GCGACAGTAACTGTTGTAACCACCTGGCCTTTCCAGCTGTCCTGTTTCAGGGGGTGTTGTCAGTATTCATaGCAGATACAGCCAGTAGAG | + |
|
Preference number: 4 (lower is better) Translates to: ATVTVVTTWPFQLSCFRGCCQYS*QIQPVE Trigger: CTCTACTGGCTGTATCTGGCATGAATACTGACAACA...CCCCCTGAAACAGGACAGCTGGAAAGGCCAGGTGGTTACAACAGTTACTGTCGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR CCA 90 bp | GCGACAGTAACTGTTGTAACCACCTGGCCTTTCCAGCTGTCCTGTTTCAGGGGGATCTTGTTCAGCTTCTaGGAGTCTGTGTTGTCAGTA | + |
|
Preference number: 4 (lower is better) Translates to: ATVTVVTTWPFQLSCFRGILFSF*ESVLSV Trigger: TACTGACAACACAGACTCCCAGAAGCTGAACAAGAT...CCCCCTGAAACAGGACAGCTGGAAAGGCCAGGTGGTTACAACAGTTACTGTCGC 50% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR CCA 90 bp | CACCCAATCACCTGGTTCCACGTCATTTGGTTTTGCTGTCTGGACTCCTCCTCCCTTGTAAAGACAAAGTaGAAAAGGCTGGCACACTCT | + |
|
Preference number: 4 (lower is better) Translates to: HPITWFHVIWFCCLDSSSLVKTK*KRLAHS Trigger: AGAGTGTGCCAGCCTTTTCCACTTTGTCTTTACAAG...GGAGGAGGAGTCCAGACAGCAAAACCAAATGACGTGGAACCAGGTGATTGGGTG 49% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR CCA 90 bp | CTGAAAGGCATCCAAGAGTCTCAGGCTGTTAGCAATGGAACGTTCAGGAATCTGATCGGCAGGGTTGGGTaGGGTATCTGGTATGAATGT | + |
|
Preference number: 4 (lower is better) Translates to: LKGIQESQAVSNGTFRNLIGRVG*GIWYEC Trigger: ACATTCATACCAGATACCCCACCCAACCCTGCCGAT...CAGATTCCTGAACGTTCCATTGCTAACAGCCTGAGACTCTTGGATGCCTTTCAG 49% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR TCA 90 bp | CGCATCTCCTTGAAGTTCTTTCTGGCTTGTGTCCCTCCCTGTTCACTGTCTGGTTATGAATGTAGCTGTTaGGAGTTAGCTGAGCCTCAT | + |
|
Preference number: 4 (lower is better) Translates to: RISLKFFLACVPPCSLSGYECSC*ELAEPH Trigger: ATGAGGCTCAGCTAACTCTCAACAGCTACATTCATA...ACCAGACAGTGAACAGGGAGGGACACAAGCCAGAAAGAACTTCAAGGAGATGCG 48% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR GCA 90 bp | AGGAAATCACACAGCATAAGCTACGTTTCGCTTACTCGCTTGGTTCTGAAGGCCCCTGGTTTCCAGACTTaGAGACATAGGTCCTATTCC | + |
|
Preference number: 4 (lower is better) Translates to: RKSHSISYVSLTRLVLKAPGFQT*RHRSYS Trigger: GGAATAGGACCTATGTCTGCAAGTCTGGAAACCAGG...GGCCTTCAGAACCAAGCGAGTAAGCGAAACGTAGCTTATGCTGTGTGATTTCCT 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR CCA 90 bp | TTTGGTTTTGCTGTCTGGACTCCTCCTCCTTGGACGGAGGTTCTCAGTAGAGCTTTCGTAGAGATACATTaGGGTCCCATTCACTTCATG | + |
|
Preference number: 4 (lower is better) Translates to: FGFAVWTPPPWTEVLSRAFVEIH*GPIHFM Trigger: CATGAAGTGAATGGGACCCCAATGTATCTCTACGAA...AGCTCTACTGAGAACCTCCGTCCAAGGAGGAGGAGTCCAGACAGCAAAACCAAA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR CCA 90 bp | GAAATCACACAGCATAAGCTACGTTTCGCTTACTCGCTTGGTTCTGAAGGCCACCAAAGTGGAAAAGGCTaGCACACTCTTTGCCCACTT | + |
|
Preference number: 4 (lower is better) Translates to: EITQHKLRFAYSLGSEGHQSGKG*HTLCPL Trigger: AAGTGGGCAAAGAGTGTGCCAGCCTTTTCCACTTTG...GTGGCCTTCAGAACCAAGCGAGTAAGCGAAACGTAGCTTATGCTGTGTGATTTC 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| 3UTR CAA 72 bp | ATGGAACGTTCAGGAATCTGTTTAGCACGCATCTCCTaGAAGTTCTTTCTGGCTTGTGTCCCTCCCTGTTCA | + |
|
Preference number: 4 (lower is better) Translates to: MERSGICLARIS*KFFLACVPPCS Trigger: TGAACAGGGAGGGACACAAGCCAGAAAGAACTTCAAGGAGATGCGTGCTAAACAGATTCCTGAACGTTCCAT 47% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR CCA 90 bp | TTTGTACAAGAGAAGTTTGACTCATCCTATGCTAAGCCAGTGCTGAATTTCCCCGACAGGCAAATTCAGTaGCGTCTAATCGGAGCTGTC | + |
|
Preference number: 4 (lower is better) Translates to: FVQEKFDSSYAKPVLNFPDRQIQ*RLIGAV Trigger: GACAGCTCCGATTAGACGCCACTGAATTTGCCTGTC...GGGGAAATTCAGCACTGGCTTAGCATAGGATGAGTCAAACTTCTCTTGTACAAA 46% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR TCA 90 bp | CAGGCTGTTAGCAATGGAACGTTCAGGAATCTGTTTAGCACGCATCTCCTTGAACATCTTTGTTCATGTTaGCTTCCAAACACTTCTTCA | + |
|
Preference number: 4 (lower is better) Translates to: QAVSNGTFRNLFSTHLLEHLCSC*LPNTSS Trigger: TGAAGAAGTGTTTGGAAGTCAACATGAACAAAGATG...TTCAAGGAGATGCGTGCTAAACAGATTCCTGAACGTTCCATTGCTAACAGCCTG 42% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS GCA 90 bp | GGAGTGGCAGACACAGCGGCCAACTCCAGACCGTGCGGCTCCAGCTaGGTGACCGCTGTGAAGAAAGCAGGGGCTGGCAGCGCCGTGGAG | + |
|
Preference number: 5 (lower is better) Translates to: GVADTAANSRPCGSS*VTAVKKAGAGSAVE Trigger: CTCCACGGCGCTGCCAGCCCCTGCTTTCTTCACAGCGGTCACGCAGCTGGAGCCGCACGGTCTGGAGTTGGCCGCTGTGTCTGCCACTCC 68% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS CCA 90 bp | TGGGCGTGGGCTGAGCCAGGCTCACGAGAGTCTGCCGTTCAGGAGTaGCAGACACAGCGGCCAACTCCAGACCGTGCGGCTCCAGCTGCG | + |
|
Preference number: 5 (lower is better) Translates to: WAWAEPGSRESAVQE*QTQRPTPDRAAPAA Trigger: CGCAGCTGGAGCCGCACGGTCTGGAGTTGGCCGCTGTGTCTGCCACTCCTGAACGGCAGACTCTCGTGAGCCTGGCTCAGCCCACGCCCA 68% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS GCA 90 bp | CCCCATTGTCTTCCTTGTGTCCACGGAAGTAGAGAGCCACCTGTTTaGGGATGGTGGACGTCCGAGGACCCCGCTCGTGCTGCACGGCAT | + |
|
Preference number: 5 (lower is better) Translates to: PHCLPCVHGSREPPV*GWWTSEDPARAARH Trigger: ATGCCGTGCAGCACGAGCGGGGTCCTCGGACGTCCACCATCCGCAAACAGGTGGCTCTCTACTTCCGTGGACACAAGGAAGACAATGGGG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS CCA 90 bp | CTTCCTTGTGTCCACGGAAGTAGAGAGCCACCTGTTTGCGGATGGTaGACGTCCGAGGACCCCGCTCGTGCTGCACGGCATCTTTGTTCA | + |
|
Preference number: 5 (lower is better) Translates to: LPCVHGSREPPVCGW*TSEDPARAARHLCS Trigger: TGAACAAAGATGCCGTGCAGCACGAGCGGGGTCCTCGGACGTCCACCATCCGCAAACAGGTGGCTCTCTACTTCCGTGGACACAAGGAAG 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS CCA 90 bp | TGTCTTCCTTGTGTCCACGGAAGTAGAGAGCCACCTGTTTGCGGATaGTGGACGTCCGAGGACCCCGCTCGTGCTGCACGGCATCTTTGT | + |
|
Preference number: 5 (lower is better) Translates to: CLPCVHGSREPPVCG*WTSEDPARAARHLC Trigger: ACAAAGATGCCGTGCAGCACGAGCGGGGTCCTCGGACGTCCACCATCCGCAAACAGGTGGCTCTCTACTTCCGTGGACACAAGGAAGACA 59% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS TCA 90 bp | CGAATCGGCAGGGTTGGGTGGGGTATCTGGTATGAATGTAGCTGTTaGGAGTTAGCTGAGCCTCATCTTGGAGAGCGGCAATGGCGGCAG | + |
|
Preference number: 5 (lower is better) Translates to: RIGRVGWGIWYECSC*ELAEPHLGERQWRQ Trigger: CTGCCGCCATTGCCGCTCTCCAAGATGAGGCTCAGCTAACTCTCAACAGCTACATTCATACCAGATACCCCACCCAACCCTGCCGATTCG 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 2 transcripts: ENSMUST00000019938.11 ENSMUST00000105498.3 |
||
| CDS-3UTR CAA 90 bp | CTCGCTGACCCTATGGCCTTTGGTTTCAGCACTTTGATGACGGGACAGCGACCATCGACACGCCCTGCATaGGTTTCTGTGTGTCTTGTC | + |
|
Preference number: 5 (lower is better) Translates to: LADPMAFGFSTLMTGQRPSTRPA*VSVCLV Trigger: GACAAGACACACAGAAACCAATGCAGGGCGTGTCGA...TGGTCGCTGTCCCGTCATCAAAGTGCTGAAACCAAAGGCCATAGGGTCAGCGAG 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR CAA 90 bp | AGGAAATCACACAGCATAAGCTACGTTTCGCTTACTCGCTTGGTTCTGAAGGCCTGCGCAGCGGCCCCATaGTCTTCCTTGTGTCCACGG | + |
|
Preference number: 5 (lower is better) Translates to: RKSHSISYVSLTRLVLKACAAAP*SSLCPR Trigger: CCGTGGACACAAGGAAGACAATGGGGCCGCTGCGCA...GGCCTTCAGAACCAAGCGAGTAAGCGAAACGTAGCTTATGCTGTGTGATTTCCT 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR CAA 90 bp | GCGACAGTAACTGTTGTAACCACCTGGCCTTTCCAGCTGTCCTGTTTCAGGGGGCCGAGCCACCACCTCTaGCAAAGCCTGTATTTCAGA | + |
|
Preference number: 5 (lower is better) Translates to: ATVTVVTTWPFQLSCFRGPSHHL*QSLYFR Trigger: TCTGAAATACAGGCTTTGCAAGAGGTGGTGGCTCGG...CCCCCTGAAACAGGACAGCTGGAAAGGCCAGGTGGTTACAACAGTTACTGTCGC 54% GC, longest homopolymer 5 nt, total homopolymer stretches 5 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR CAA 90 bp | CAGCACTTTGATGACGGGACAGCGACCACCTCACCCAATCACCTGGTTCCACGTTGCTGCACGGCATCTTaGTTCATGTTGACTTCCAAA | + |
|
Preference number: 5 (lower is better) Translates to: QHFDDGTATTSPNHLVPRCCTAS*FMLTSK Trigger: TTTGGAAGTCAACATGAACAAAGATGCCGTGCAGCA...ACGTGGAACCAGGTGATTGGGTGAGGTGGTCGCTGTCCCGTCATCAAAGTGCTG 52% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR CAA 90 bp | CAGCACTTTGATGACGGGACAGCGACCACCTCACCCAATCACCTGGTTCCACGTCTTCGTAGAGATACATaGGGGTCCCATTCACTTCAT | + |
|
Preference number: 5 (lower is better) Translates to: QHFDDGTATTSPNHLVPRLRRDT*GSHSLH Trigger: ATGAAGTGAATGGGACCCCAATGTATCTCTACGAAG...ACGTGGAACCAGGTGATTGGGTGAGGTGGTCGCTGTCCCGTCATCAAAGTGCTG 52% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS GCA 90 bp | TCAGTGGCGTCTAATCGGAGCTGTCTGAACCGAGCCACCACCTCTTaGAAAGCCTGTATTTCAGATATGATCTTGTTCAGCTTCTGGGAG | + |
|
Preference number: 5 (lower is better) Translates to: SVASNRSCLNRATTS*KACISDMILFSFWE Trigger: CTCCCAGAAGCTGAACAAGATCATATCTGAAATACAGGCTTTGCAAGAGGTGGTGGCTCGGTTCAGACAGCTCCGATTAGACGCCACTGA 50% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019938.11 ENSMUST00000105498.3 |
||
| CDS-3UTR CAA 90 bp | CAGAGTTTTCTGAAAGGCATCCAAGAGTCTCAGGCTGTTAGCAATGGAACGTTCTGGTTTCTGTGTGTCTaGTCTACGGGGCATCCTCCC | + |
|
Preference number: 5 (lower is better) Translates to: QSFLKGIQESQAVSNGTFWFLCV*STGHPP Trigger: GGGAGGATGCCCCGTAGACAAGACACACAGAAACCA...GAACGTTCCATTGCTAACAGCCTGAGACTCTTGGATGCCTTTCAGAAAACTCTG 50% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR CAA 90 bp | TTTGGTTTTGCTGTCTGGACTCCTCCTCCTTGGACGGAGGTTCTCAGTAGAGCTATTTCAGATATGATCTaGTTCAGCTTCTGGGAGTCT | + |
|
Preference number: 5 (lower is better) Translates to: FGFAVWTPPPWTEVLSRAISDMI*FSFWES Trigger: AGACTCCCAGAAGCTGAACAAGATCATATCTGAAAT...AGCTCTACTGAGAACCTCCGTCCAAGGAGGAGGAGTCCAGACAGCAAAACCAAA 47% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS-3UTR CAA 90 bp | TTTGTACAAGAGAAGTTTGACTCATCCTATGCTAAGCCAGTGCTGAATTTCCCCACACTCTTTGCCCACTaGATGCTCATAAAGAGAAGC | + |
|
Preference number: 5 (lower is better) Translates to: FVQEKFDSSYAKPVLNFPTLFAH*MLIKRS Trigger: GCTTCTCTTTATGAGCATCAAGTGGGCAAAGAGTGT...GGGGAAATTCAGCACTGGCTTAGCATAGGATGAGTCAAACTTCTCTTGTACAAA 43% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS CCA 72 bp | CTCCAGCTGCGTGACCGCTGTGAAGAAAGCAGGGGCTaGCAGCGCCGTGGAGGGGAAGTGCGCAGCGGCCCC | + |
|
Preference number: 6 (lower is better) Translates to: LQLRDRCEESRG*QRRGGEVRSGP Trigger: GGGGCCGCTGCGCACTTCCCCTCCACGGCGCTGCCAGCCCCTGCTTTCTTCACAGCGGTCACGCAGCTGGAG 71% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS GCA 72 bp | GACACAGCGGCCAACTCCAGACCGTGCGGCTCCAGCTaGGTGACCGCTGTGAAGAAAGCAGGGGCTGGCAGC | + |
|
Preference number: 6 (lower is better) Translates to: DTAANSRPCGSS*VTAVKKAGAGS Trigger: GCTGCCAGCCCCTGCTTTCTTCACAGCGGTCACGCAGCTGGAGCCGCACGGTCTGGAGTTGGCCGCTGTGTC 67% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS CCA 72 bp | GCTGAGCCAGGCTCACGAGAGTCTGCCGTTCAGGAGTaGCAGACACAGCGGCCAACTCCAGACCGTGCGGCT | + |
|
Preference number: 6 (lower is better) Translates to: AEPGSRESAVQE*QTQRPTPDRAA Trigger: AGCCGCACGGTCTGGAGTTGGCCGCTGTGTCTGCCACTCCTGAACGGCAGACTCTCGTGAGCCTGGCTCAGC 65% GC, longest homopolymer 2 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS CCA 72 bp | GTCCACGGAAGTAGAGAGCCACCTGTTTGCGGATGGTaGACGTCCGAGGACCCCGCTCGTGCTGCACGGCAT | + |
|
Preference number: 6 (lower is better) Translates to: VHGSREPPVCGW*TSEDPARAARH Trigger: ATGCCGTGCAGCACGAGCGGGGTCCTCGGACGTCCACCATCCGCAAACAGGTGGCTCTCTACTTCCGTGGAC 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS CCA 72 bp | TGTGTCCACGGAAGTAGAGAGCCACCTGTTTGCGGATaGTGGACGTCCGAGGACCCCGCTCGTGCTGCACGG | + |
|
Preference number: 6 (lower is better) Translates to: CVHGSREPPVCG*WTSEDPARAAR Trigger: CCGTGCAGCACGAGCGGGGTCCTCGGACGTCCACCATCCGCAAACAGGTGGCTCTCTACTTCCGTGGACACA 64% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS GCA 72 bp | CTTCCTTGTGTCCACGGAAGTAGAGAGCCACCTGTTTaGGGATGGTGGACGTCCGAGGACCCCGCTCGTGCT | + |
|
Preference number: 6 (lower is better) Translates to: LPCVHGSREPPV*GWWTSEDPARA Trigger: AGCACGAGCGGGGTCCTCGGACGTCCACCATCCGCAAACAGGTGGCTCTCTACTTCCGTGGACACAAGGAAG 61% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS TCA 72 bp | GACCCCGCTCGTGCTGCACGGCATCTTTGTTCATGTTaGCTTCCAAACACTTCTTCAGTCGACACGCCCTGC | + |
|
Preference number: 6 (lower is better) Translates to: DPARAARHLCSC*LPNTSSVDTPC Trigger: GCAGGGCGTGTCGACTGAAGAAGTGTTTGGAAGTCAACATGAACAAAGATGCCGTGCAGCACGAGCGGGGTC 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS GCA 72 bp | TGTTTGCGGATGGTGGACGTCCGAGGACCCCGCTCGTaGTGCACGGCATCTTTGTTCATGTTGACTTCCAAA | + |
|
Preference number: 6 (lower is better) Translates to: CLRMVDVRGPRS*CTASLFMLTSK Trigger: TTTGGAAGTCAACATGAACAAAGATGCCGTGCAGCACGAGCGGGGTCCTCGGACGTCCACCATCCGCAAACA 56% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS CAA 90 bp | CAGCTGATTCACACACGGACTCAGTGGCCACTTCGTAGAGATACATaGGGGTCCCATTCACTTCATGGGGATACTTGGGCGTGGGCTGAG | + |
|
Preference number: 6 (lower is better) Translates to: QLIHTRTQWPLRRDT*GSHSLHGDTWAWAE Trigger: CTCAGCCCACGCCCAAGTATCCCCATGAAGTGAATGGGACCCCAATGTATCTCTACGAAGTGGCCACTGAGTCCGTGTGTGAATCAGCTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS TCA 72 bp | TGCAGACATAGGTCCTATTCCTTCGAATGCTCCTCTTaGAGAATCCGGAGCAGCCGTCGCAAGCGTAGACCC | + |
|
Preference number: 6 (lower is better) Translates to: CRHRSYSFECSS*RIRSSRRKRRP Trigger: GGGTCTACGCTTGCGACGGCTGCTCCGGATTCTTCAAGAGGAGCATTCGAAGGAATAGGACCTATGTCTGCA 54% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS CAA 72 bp | TTCAGTCGACACGCCCTGCATTGGTTTCTGTGTGTCTaGTCTACGGGGCATCCTCCCTGGTTTCCAGACTTG | + |
|
Preference number: 6 (lower is better) Translates to: FSRHALHWFLCV*STGHPPWFPDL Trigger: CAAGTCTGGAAACCAGGGAGGATGCCCCGTAGACAAGACACACAGAAACCAATGCAGGGCGTGTCGACTGAA 54% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS CAA 72 bp | CACACACGGACTCAGTGGCCACTTCGTAGAGATACATaGGGGTCCCATTCACTTCATGGGGATACTTGGGCG | + |
|
Preference number: 6 (lower is better) Translates to: HTRTQWPLRRDT*GSHSLHGDTWA Trigger: CGCCCAAGTATCCCCATGAAGTGAATGGGACCCCAATGTATCTCTACGAAGTGGCCACTGAGTCCGTGTGTG 54% GC, longest homopolymer 4 nt, total homopolymer stretches 8 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS CCA 72 bp | ACACACGGACTCAGTGGCCACTTCGTAGAGATACATTaGGGTCCCATTCACTTCATGGGGATACTTGGGCGT | + |
|
Preference number: 6 (lower is better) Translates to: THGLSGHFVEIH*GPIHFMGILGR Trigger: ACGCCCAAGTATCCCCATGAAGTGAATGGGACCCCAATGTATCTCTACGAAGTGGCCACTGAGTCCGTGTGT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS CCA 72 bp | AGAGAAGCCTGGCAGCTGATTCACACACGGACTCAGTaGCCACTTCGTAGAGATACATTGGGGTCCCATTCA | + |
|
Preference number: 6 (lower is better) Translates to: REAWQLIHTRTQ*PLRRDTLGSHS Trigger: TGAATGGGACCCCAATGTATCTCTACGAAGTGGCCACTGAGTCCGTGTGTGAATCAGCTGCCAGGCTTCTCT 53% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS TCA 72 bp | GACAGGCAAATTCAGTGGCGTCTAATCGGAGCTGTCTaGACCGAGCCACCACCTCTTGCAAAGCCTGTATTT | + |
|
Preference number: 6 (lower is better) Translates to: DRQIQWRLIGAV*TEPPPLAKPVF Trigger: AAATACAGGCTTTGCAAGAGGTGGTGGCTCGGTTCAGACAGCTCCGATTAGACGCCACTGAATTTGCCTGTC 51% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019938.11 ENSMUST00000105498.3 |
||
| CDS CAA 72 bp | GACAAAGTGGAAAAGGCTGGCACACTCTTTGCCCACTaGATGCTCATAAAGAGAAGCCTGGCAGCTGATTCA | + |
|
Preference number: 6 (lower is better) Translates to: DKVEKAGTLFAH*MLIKRSLAADS Trigger: TGAATCAGCTGCCAGGCTTCTCTTTATGAGCATCAAGTGGGCAAAGAGTGTGCCAGCCTTTTCCACTTTGTC 49% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS CAA 90 bp | TCTTGTAAAGACAAAGTGGAAAAGGCTGGCACACTCTTTGCCCACTaGATGCTCATAAAGAGAAGCCTGGCAGCTGATTCACACACGGAC | + |
|
Preference number: 6 (lower is better) Translates to: SCKDKVEKAGTLFAH*MLIKRSLAADSHTD Trigger: GTCCGTGTGTGAATCAGCTGCCAGGCTTCTCTTTATGAGCATCAAGTGGGCAAAGAGTGTGCCAGCCTTTTCCACTTTGTCTTTACAAGA 48% GC, longest homopolymer 4 nt, total homopolymer stretches 4 nt. Matches the following 1 transcripts: ENSMUST00000019938.11 |
||
| CDS CAA 72 bp | ACCACCTCTTGCAAAGCCTGTATTTCAGATATGATCTaGTTCAGCTTCTGGGAGTCTGTGTTGTCAGTATTC | + |
|
Preference number: 6 (lower is better) Translates to: TTSCKACISDMI*FSFWESVLSVF Trigger: GAATACTGACAACACAGACTCCCAGAAGCTGAACAAGATCATATCTGAAATACAGGCTTTGCAAGAGGTGGT 43% GC, longest homopolymer 3 nt, total homopolymer stretches 0 nt. Matches the following 2 transcripts: ENSMUST00000019938.11 ENSMUST00000105498.3 |
||